Terada Tomoki 寺田智樹

… Alternative Names

TERADA Tomoki 寺田智樹

寺田智樹テラダトモキ

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Researcher Number	20420367
Other IDs
Affiliation (Current)	2025: 名古屋大学, 工学研究科, 准教授
Affiliation (based on the past Project Information) *help	2019 – 2024: 名古屋大学, 工学研究科, 准教授 2014: 名古屋大学, 大学院工学研究科, 准教授 2007: Nagoya University, 大学院・工学研究科, 講師 2006: 名古屋大学, 大学院工学研究科, 講師
Review Section/Research Field	Principal Investigator Basic Section 43040:Biophysics-related / Biophysics Except Principal Investigator Biophysics/Chemical physics / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Genetics/Genome dynamics / Science and Engineering
Keywords	Principal Investigator アロステリック転移 / エネルギーランドスケープ理論 / ランドスケープ描像 / 分子動力学計算 / 粗視化モデル / タンパク質の構造転移 / システム生物学 / 概日リズム / 統計力学 / ナノバイオ / 分子モーター / 蛋白質 / 生物物理 … More Except Principal Investigator … More 国際情報交換アメリカ / 遺伝子ネットワーク / クロマチンドメイン / 相分離 / ゲノム立体構造 / トランジェントアッセイ / レポーターアッセイ / 時計遺伝子 / 生物リズム（概日リズム） / 生物時計（概日時計） / 基部植物 / 概日時計 / 概日リズム / リン酸リレー / 遺伝子破壊 / ヒメツリガネゴケ / 進化 / 生物リズム / 生物時計 / ゲノムMD / 遺伝子制御ネットワーク / 非断熱揺らぎ / クロマチン構造 / 遺伝子制御ネットワーク理論 / 遺伝子スイッチの非断熱揺らぎ / ゲノム分子動力学 / 国際情報交流アメリカ / 揺らぎ / ES細胞 / 統計力学 / 分子モーター / ナノバイオ / 蛋白質 / 生物物理 Less

Principles of genome dynamics and DNA functions
- Principal Investigator
  
  笹井理生
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Kyoto University
A stochastic description of protein conformational transition by global landscape calculationPrincipal Investigator
- Principal Investigator
  
  Terada Tomoki
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Nagoya University
Theories of fluctuation and regulation of eukaryotic gene switches
- Principal Investigator
  
  SASAI Masaki
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Biophysics/Chemical physics
- Research Institution
  Nagoya University
Understanding of the mechanism of the plant biological clock based on comparison between molecular networks.
- Principal Investigator
  
  AOKI Setsuyuki
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  Nagoya University
Statistical physics of dynamical transitions in ES cells
- Principal Investigator
  
  SASAI Masaki
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Biophysics/Chemical physics
- Research Institution
  Nagoya University
蛋白質の柔らかいダイナミクスの分子論
- Principal Investigator
  
  SASAI Masaki
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Nagoya University
タンパク質の分子内・分子間コミュニケーションによる構造転移の基礎理論Principal Investigator
- Principal Investigator
  
  寺田智樹
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University

All 2022 2021 2020 2019 2014 2013 2012 2007 Other

All Journal Article Presentation Book

[Book] 生体分子のつくるシステム　｢ゲノム系計算科学（計算科学講座第7巻）｣2013
- Author(s)
  笹井理生、寺田智樹
- Total Pages
  27
- Publisher
  共立出版
- Data Source
  KAKENHI-PROJECT-23654147
[Book] 生体分子のつくるシステム｢ゲノム系計算科学（計算科学講座第7巻）｣2013
- Author(s)
  笹井理生、寺田智樹
- Total Pages
  27
- Publisher
  共立出版
- Data Source
  KAKENHI-PROJECT-24244068
[Journal Article] Landscape-Based View on the Stepping Movement of Myosin VI2022
- Author(s)
  Terada Tomoki P.、Nie Qing-Miao、Sasai Masaki
- Journal Title
  
  The Journal of Physical Chemistry B
  
  Volume: 126 Issue: 38 Pages: 7262-7270
- DOI
  10.1021/acs.jpcb.2c03694
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-21H00248, KAKENHI-PROJECT-22H00406
[Journal Article] Folding pathway of a multidomain protein depends on its topology of domain connectivity2014
- Author(s)
  Takashi Inanami, Tomoki P. Terada, and Masaki Sasai
- Journal Title
  
  Proc. Natl. Acad. Sci. USA
  
  Volume: 111 Issue: 45 Pages: 15969-15974
- DOI
  10.1073/pnas.1406244111
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068, KAKENHI-PUBLICLY-26102520
[Journal Article] Conformational flexibility of loops of myosin enhances global bias in the actin-myosin interaction landscape2014
- Author(s)
  Qing-Miao Nie, Masaki Sasai, and Tomoki P. Terada
- Journal Title
  
  Phys. Chem. Chem. Phys.
  
  Volume: 16 Issue: 14 Pages: 6441-6447
- DOI
  10.1039/c3cp54464h
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24244068
[Journal Article] Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin2014
- Author(s)
  Nie, QM., Togashi, A., Sasaki, TN., Takano, M., Sasai, M., Terada, TP
- Journal Title
  
  PLoS Comput Biol
  
  Volume: 10 Issue: 4 Pages: e1003552-e1003552
- DOI
  10.1371/journal.pcbi.1003552
- NAID
  120005476003
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-21113006, KAKENHI-PUBLICLY-23118716, KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068, KAKENHI-PUBLICLY-26102520
[Journal Article] Time scales in epigenetic dynamics and phenotypic heterogeneity of embryonic stem cells2013
- Author(s)
  Masaki Sasai, Yudai Kawabata, Koh Makishi, Kazuhito Itoh, and Tomoki P. Terada
- Journal Title
  
  PLoS Comp. Biol.
  
  Volume: 9 Issue: 12 Pages: e1003380-e1003380
- DOI
  10.1371/journal.pcbi.1003380
- NAID
  120005476001
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23654147, KAKENHI-PROJECT-24244068
[Journal Article] Entropic mechanism of allosteric communication in conformational transitions of dihydrofolate reductase2013
- Author(s)
  Tomoki P. Terada, Toru Kimura, and Masaki Sasai
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 117 Issue: 42 Pages: 12864-12877
- DOI
  10.1021/jp402071m
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24244068
[Journal Article] Dynamical modeling of 3D genome organization in interphase budding yeast2012
- Author(s)
  N. Tokuda, T. P. Terada, and M. Sasai
- Journal Title
  
  Biophys. J.
  
  Volume: Vol.102, No.2 Issue: 2 Pages: 296-304
- DOI
  10.1016/j.bpj.2011.12.005
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20244068, KAKENHI-PROJECT-23654147
[Presentation] Free energy landscape analysis of conformational transition of NtrC by chameleon model2021
- Author(s)
  永田大晴, 笹井理生, 寺田智樹
- Organizer
  第59回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K06597
[Presentation] カメレオンモデルによるアデニル酸キナーゼの構造転移の研究2021
- Author(s)
  吉田樹生, 笹井理生, 寺田智樹
- Organizer
  第59回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K06597
[Presentation] Conformational transition of NtrC elucidated by the improvement of dihedral angle potential in chameleon model2020
- Author(s)
  Taisei Nagata, Masaki Sasai, Tomoki P. Terada
- Organizer
  第５８回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K06597
[Presentation] Conformational transition of adenylate kinase studied with the improved chameleon model2019
- Author(s)
  Ryota Mori, Masaki Sasai, Tomoki P. Terada
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-19K06597
[Presentation] A chameleon Go model study of the allosteric communication in adenylate kinase2007
- Author(s)
  山下貴弘, 笹井理生, 寺田智樹
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  パシフィコ横浜
- Data Source
  KAKENHI-PROJECT-18031017
[Presentation] ミオシン滑り運動とカメレオンGoモデル2007
- Author(s)
  寺田智樹
- Organizer
  次世代生命体統合・分子スケール秋のミニ集会
- Place of Presentation
  旅荘茶谷(京都市左京区大原)
- Year and Date
  2007-11-27
- Data Source
  KAKENHI-PROJECT-18770128
[Presentation] アクチンフィラメント上のミオシン頭部のバイアス運動への疎水および静電相互作用の寄与2007
- Author(s)
  寺田智樹, 笹井理生
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  パシフィコ横浜
- Data Source
  KAKENHI-PROJECT-18031017
[Presentation] ミオシン滑り運動とカメレオンGoモデル2007
- Author(s)
  寺田智樹
- Organizer
  次世代生命体統合, 分子スケール秋のミニ集会
- Place of Presentation
  京都市左京区大原
- Year and Date
  2007-11-27
- Data Source
  KAKENHI-PROJECT-18031017
[Presentation] アデニル酸キナーゼにおけるアロステリックコミュニケーションのカメレオンGoモデルによる研究2007
- Author(s)
  山下貴弘, 笹井理生, 寺田智樹
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  パシフィコ横浜(横浜市西区みなとみらい)
- Year and Date
  2007-12-23
- Data Source
  KAKENHI-PROJECT-18770128
[Presentation] Dynamical energy landscape view of actomyosin motors
- Author(s)
  Masaki Sasai, Qing-Miao Nie, and Tomoki P. Terada
- Organizer
  The 7th Korea-Japan Seminars on Biomolecular Sciences
- Place of Presentation
  Seoul
- Year and Date
  2014-11-26 – 2014-11-28
- Invited
- Data Source
  KAKENHI-PROJECT-24244068
[Presentation] Dynamical energy landscape view of actomyosin motors
- Author(s)
  Masaki Sasai, Qing-Miao Nie, and Tomoki P. Terada
- Organizer
  The 7th Korea-Japan Seminars on Biomolecular Sciences
- Place of Presentation
  Seoul
- Year and Date
  2014-11-26 – 2014-11-28
- Invited
- Data Source
  KAKENHI-PROJECT-23654147

1. SASAI Masaki (30178628)

# of Collaborated Projects: 4 results

# of Collaborated Products: 12 results
2. CHIKENJI George (10420366)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
3. WANG Jin

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. AOKI Setsuyuki (30283469)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. YAMASHINO Takashi (00314005)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. KITAYAMA Yoko (20444367)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 高野光則

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Terada Tomoki 寺田 智樹

TERADA Tomoki 寺田 智樹

寺田 智樹 テラダ トモキ

Research Projects

Research Products

Co-Researchers

Principles of genome dynamics and DNA functions

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

A stochastic description of protein conformational transition by global landscape calculationPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Theories of fluctuation and regulation of eukaryotic gene switches

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Understanding of the mechanism of the plant biological clock based on comparison between molecular networks.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Statistical physics of dynamical transitions in ES cells

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

蛋白質の柔らかいダイナミクスの分子論

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

タンパク質の分子内・分子間コミュニケーションによる構造転移の基礎理論Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 生体分子のつくるシステム ｢ゲノム系計算科学（計算科学講座第7巻）｣2013

Author(s)

Total Pages

Publisher

Data Source

[Book] 生体分子のつくるシステム ｢ゲノム系計算科学（計算科学講座第7巻）｣2013

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] Landscape-Based View on the Stepping Movement of Myosin VI2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Folding pathway of a multidomain protein depends on its topology of domain connectivity2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Conformational flexibility of loops of myosin enhances global bias in the actin-myosin interaction landscape2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin2014

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Time scales in epigenetic dynamics and phenotypic heterogeneity of embryonic stem cells2013

Terada Tomoki 寺田智樹

TERADA Tomoki 寺田智樹

寺田智樹テラダトモキ

[Book] 生体分子のつくるシステム　｢ゲノム系計算科学（計算科学講座第7巻）｣2013

[Book] 生体分子のつくるシステム｢ゲノム系計算科学（計算科学講座第7巻）｣2013