• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

KAWAJI HIDEYA  川路 英哉

ORCIDConnect your ORCID iD *help
… Alternative Names

Kawaji Hideya  川路 英哉

KAWAJI Hideya  川路 英哉

Less
Researcher Number 20525406
Other IDs
Affiliation (Current) 2025: 公益財団法人東京都医学総合研究所, ゲノム医学研究センター, ゲノム医学研究センター長
2025: 公益財団法人東京都医学総合研究所, その他部局等, 参事研究員
Affiliation (based on the past Project Information) *help 2020 – 2023: 公益財団法人東京都医学総合研究所, その他部局等, 副参事研究員
2019 – 2023: 公益財団法人東京都医学総合研究所, ゲノム医学研究センター, 副センター長
2018: 国立研究開発法人理化学研究所, 生命医科学研究センター, 開発ユニットリーダー
2017: 理化学研究所, 予防医療・診断技術開発プログラム 予防医療・ゲノミクス応用開発ユニット, 開発ユニットリーダー
2016 – 2017: 国立研究開発法人理化学研究所, 情報基盤センター, 開発ユニットリーダー
2011: 独立行政法人理化学研究所, 小分子RNA連携ユニット, ユニットリーダー
2010: 独立行政法人理化学研究所, LSA情報基盤施設, 研究員
Review Section/Research Field
Principal Investigator
Life / Health / Medical informatics / Genome biology
Except Principal Investigator
Basic Section 48040:Medical biochemistry-related / Basic Section 43050:Genome biology-related / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Obstetrics and gynecology
Keywords
Principal Investigator
transcriptome / ゲノミクス / トランスクリプトーム / 転写開始点 / プロモータ / promoter / データーベース / 次世代シーケンサ / エピゲノム / genomics … More / bioinformatics / database / epigenome / genome / データベース / バイオインフォマティクス / enahncer / nucleosome / epigenetics / enhancer / TSS / エピジェネティクス / 転写開始活性 / エンハンサー / プロモーター / 転写制御 / ncRNA / primary miRN / RNA干渉 / RNA silencing / non-coding RNA / primary miRNA / next generation sequencer / small RNA / transcriptional regulation / primary transcript / miRNA … More
Except Principal Investigator
CAGE / enhancer RNA / UGT1A1 / エンハンサーRNA / PXR / 薬剤応答性エンハンサー / レポーターアッセイ / iPS細胞 / CRISPR-Cas9 / ヒトiPS細胞 / DNAリピート / ゲノム解析 / ゲノム編集 / ゲノム医療 / 自己免疫性疾患 / 全ゲノム関連解析 / エンハンサー / 遺伝多型 / 遺伝子発現 / バイオマーカー / 個別化医療 / リンパ浮腫 / トランスクリプトーム / CAGE法 / リンパ節転移 / 子宮体癌 Less
  • Research Projects

    (7 results)
  • Research Products

    (30 results)
  • Co-Researchers

    (18 People)
  •  網羅的 eRNA 発現解析による薬剤応答性エンハンサーの同定と機能解析

    • Principal Investigator
      齊藤 紗希 (後藤紗希)
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 48040:Medical biochemistry-related
    • Research Institution
      Tokyo Metropolitan Institute of Medical Science
  •  Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution

    • Principal Investigator
      Woltjen Knut
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 43050:Genome biology-related
    • Research Institution
      Kyoto University
  •  Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases

    • Principal Investigator
      Terao Chikashi
    • Project Period (FY)
      2020 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
    • Research Institution
      Institute of Physical and Chemical Research
  •  Reverse engineering of transcriptional regulatory regions through data modeling of transcription initiation activitiesPrincipal Investigator

    • Principal Investigator
      KAWAJI Hideya
    • Project Period (FY)
      2016 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Tokyo Metropolitan Institute of Medical Science
      Institute of Physical and Chemical Research
  •  Development of a genomics data sharing platform in AsiaPrincipal Investigator

    • Principal Investigator
      Kawaji Hideya
    • Project Period (FY)
      2016 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Institute of Physical and Chemical Research
  •  Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma

    • Principal Investigator
      TERAO YASUHISA
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Obstetrics and gynecology
    • Research Institution
      Juntendo University
  •  Comprehensive analysis of miRNA promotersPrincipal Investigator

    • Principal Investigator
      KAWAJI Hideya
    • Project Period (FY)
      2010 – 2011
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Genome biology
    • Research Institution
      The Institute of Physical and Chemical Research

All 2023 2022 2020 2019 2018 2017 2016 2011

All Journal Article Presentation Patent

  • [Journal Article] Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning2022

    • Author(s)
      Koido Masaru、Hon Chung-Chau、Koyama Satoshi、Kawaji Hideya、Murakawa Yasuhiro、Ishigaki Kazuyoshi、Ito Kaoru、Sese Jun、Parrish Nicholas F.、Kamatani Yoichiro、Carninci Piero、Terao Chikashi
    • Journal Title

      Nature Biomedical Engineering

      Volume: Online Issue: 6 Pages: 830-844

    • DOI

      10.1038/s41551-022-00961-8

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22KF0209, KAKENHI-PROJECT-20K15773, KAKENHI-PROJECT-21K20647, KAKENHI-PROJECT-20H00462, KAKENHI-PROJECT-23K24373
  • [Journal Article] FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs2020

    • Author(s)
      Abugessaisa Imad et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Issue: D1 Pages: D892-D898

    • DOI

      10.1093/nar/gkaa1054

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K06623, KAKENHI-PROJECT-16H02902
  • [Journal Article] Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites2020

    • Author(s)
      Morioka Masaki Suimye、Kawaji Hideya、Nishiyori-Sueki Hiromi、Murata Mitsuyoshi、Kojima-Ishiyama Miki、Carninci Piero、Itoh Masayoshi
    • Journal Title

      Methods Mol Biol

      Volume: 1 Pages: 277-301

    • DOI

      10.1007/978-1-0716-0327-7_20

    • ISBN
      9781071603260, 9781071603277
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Journal Article] Update of the FANTOM web resource: expansion to provide additional transcriptome atlases2019

    • Author(s)
      Lizio Marina、Abugessaisa Imad、Noguchi Shuhei、Kondo Atsushi、Hasegawa Akira、Hon Chung Chau、de Hoon Michiel、Severin Jessica、Oki Shinya、Hayashizaki Yoshihide、Carninci Piero、Kasukawa Takeya、Kawaji Hideya
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Issue: D1 Pages: D752-D758

    • DOI

      10.1093/nar/gky1099

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-18KT0024
  • [Journal Article] refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites2019

    • Author(s)
      Abugessaisa Imad、Noguchi Shuhei、Hasegawa Akira、Kondo Atsushi、Kawaji Hideya、Carninci Piero、Kasukawa Takeya
    • Journal Title

      Journal of Molecular Biology

      Volume: 431 Issue: 13 Pages: 2407-2422

    • DOI

      10.1016/j.jmb.2019.04.045

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Journal Article] NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements2019

    • Author(s)
      Hirabayashi Shigeki、Bhagat Shruti、Matsuki Yu、Takegami Yujiro、Uehata Takuya、Kanemaru Ai、Itoh Masayoshi、Shirakawa Kotaro、Takaori-Kondo Akifumi、Takeuchi Osamu、Carninci Piero、Katayama Shintaro、Hayashizaki Yoshihide、Kere Juha、Kawaji Hideya、Murakawa Yasuhiro
    • Journal Title

      Nature Genetics

      Volume: 51 Issue: 9 Pages: 1369-1379

    • DOI

      10.1038/s41588-019-0485-9

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H05278, KAKENHI-PROJECT-18H03992, KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-18K15185
  • [Journal Article] dirHub: a trackHub configurator with directory structure projection2018

    • Author(s)
      Hideya Kawaji
    • Journal Title

      bioRxiv

      Volume: May Pages: 4-4

    • DOI

      10.1101/314807

    • Open Access
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Journal Article] Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis.2017

    • Author(s)
      Yoshida E, Terao Y, Hayashi N, Mogushi K, Arakawa A, Tanaka Y, Ito Y, Ohmiya H, Hayashizaki Y, Takeda S, Itoh M, Kawaji H.
    • Journal Title

      Sci Rep

      Volume: 7(1):14160 Issue: 1 Pages: 1-15

    • DOI

      10.1038/s41598-017-14418-5

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16K10552, KAKENHI-PROJECT-15K10732, KAKENHI-PROJECT-16K15334
  • [Journal Article] Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.2017

    • Author(s)
      Lizio M et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: D1 Pages: D737-D743

    • DOI

      10.1093/nar/gkw995

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-16K12529
  • [Patent] 子宮体がんのリンパ節転移能の評価方法2017

    • Inventor(s)
      寺尾泰久、吉田惠美子、竹田省、林崎良英、伊藤昌可、川路英哉
    • Industrial Property Rights Holder
      寺尾泰久、吉田惠美子、竹田省、林崎良英、伊藤昌可、川路英哉
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Overseas
    • Data Source
      KAKENHI-PROJECT-15K10732
  • [Presentation] ヒト肝癌細胞における薬剤誘導性エンハンサーRNAの機能解析2023

    • Author(s)
      齊藤紗希, 和田涼子, 川路英哉
    • Organizer
      第46回 日本分子生物学会
    • Data Source
      KAKENHI-PROJECT-23K06396
  • [Presentation] Genome-wide profiling of enhancer RNA initiation events identified novel drug-responsive enhancers in human hepatocytes2023

    • Author(s)
      Saki Gotoh-Saito, Ryoko Wada, Toyoaki Natsume, Hideya Kawaji
    • Organizer
      第23回シトクロムP450国際会議
    • Data Source
      KAKENHI-PROJECT-23K06396
  • [Presentation] dirHub: a trackHub configurator with directory structure projection2018

    • Author(s)
      Hideya Kawaji
    • Organizer
      Biology of Genome
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Presentation] 転写開始イベントの高精度・高解像度プロファイルが 明らかにするタンパク質非コード領域とその複雑な制御2017

    • Author(s)
      川路英哉
    • Organizer
      京都大学ウイルス・再生医科学研究所第3回生命情報研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017

    • Author(s)
      川路英哉
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Data Source
      KAKENHI-PROJECT-16K12529
  • [Presentation] 転写開始イベントの高精度・高解像度プロファイルが 明らかにするタンパク質非コード領域とその複雑な制御2017

    • Author(s)
      川路英哉
    • Organizer
      京都大学ウイルス・再生医科学研究所第3回生命情報研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16K12529
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017

    • Author(s)
      川路英哉
    • Organizer
      トーゴーの日シンポジウム2017
    • Data Source
      KAKENHI-PROJECT-16K12529
  • [Presentation] Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma2017

    • Author(s)
      Yasuhisa Terao, Emiko Yoshida, Yosuke Ito , Kazunari Fujino, Soshi Kusunoki, Tsuyoshi Ota, Masayoshi Itoh , Hideya Kawaji, Satoru Takeda
    • Organizer
      The 20th ESGO International Meeting, 2017/11/04-07 Vienna Austria
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K10732
  • [Presentation] “dogma (model)” conscious and agnostic data sharing2016

    • Author(s)
      Kawaji H.
    • Organizer
      Biohackathon 2016 Symposium
    • Place of Presentation
      Yamagata, Japan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Presentation] Precise annotation of TSS peaks uncovering complexity in state-dependent activation of transcription initiation2016

    • Author(s)
      Kawaji H.
    • Organizer
      Study Sessions on Bioinformatics and Related Topics (at IFReC, Osaka Univ.)
    • Place of Presentation
      Osaka, Japan
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Presentation] Precise annotation of TSS peaks uncovering complexity in state-dependent activation of transcription initiation2016

    • Author(s)
      Kawaji H.
    • Organizer
      Genome Informatics
    • Place of Presentation
      Cambridge, UK
    • Year and Date
      2016-09-19
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H02902
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016

    • Author(s)
      川路英哉
    • Organizer
      トーゴーの日2016
    • Place of Presentation
      東京大学弥生講堂 (東京)
    • Year and Date
      2016-10-05
    • Data Source
      KAKENHI-PROJECT-16K12529
  • [Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016

    • Author(s)
      川路英哉
    • Organizer
      第39回分子生物学会年会
    • Place of Presentation
      パシフィコ横浜 (横浜)
    • Data Source
      KAKENHI-PROJECT-16K12529
  • [Presentation] Alternative structures of primary microRNAs revealed with high-throughput sequencing2011

    • Author(s)
      Kawaji H
    • Organizer
      RNA2011
    • Place of Presentation
      京都府京都市
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] Alternative structures of primary miRNAs2011

    • Author(s)
      川路英哉
    • Organizer
      NGS現場の会
    • Place of Presentation
      静岡県熱海市
    • Year and Date
      2011-05-29
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] Alternative structures of primary microRNAs revealed with high-throug hput sequencing2011

    • Author(s)
      川路英哉
    • Organizer
      中央大学理工学部物理学科セミナー
    • Place of Presentation
      東京都文京区(招待講演)
    • Year and Date
      2011-09-07
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] 網羅的なRNAの同定、定量、ネットワーク解析における計算機解析2011

    • Author(s)
      川路英哉
    • Organizer
      第14回情報論的学習理論ワークショップ
    • Place of Presentation
      奈良県奈良市
    • Year and Date
      2011-11-10
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] Alternative structures of primary microRNAs revealed with high-throug hput sequencing2011

    • Author(s)
      川路英哉
    • Organizer
      RNA2011
    • Place of Presentation
      京都府京都市
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] 網羅的なRNAの同定、定量、ネットワーク解析における計算機解析2011

    • Author(s)
      川路英哉
    • Organizer
      第14回情報論的学習理論ワークショップ(IBIS2011)
    • Place of Presentation
      奈良県奈良市(招待講演)
    • Year and Date
      2011-11-10
    • Data Source
      KAKENHI-PROJECT-22710189
  • [Presentation] Alternative structures of primary microRNAs revealed with high-throughput sequencing2011

    • Author(s)
      川路英哉
    • Organizer
      中央大学理工学部物理学科セミナー
    • Place of Presentation
      東京都文京区
    • Year and Date
      2011-09-07
    • Data Source
      KAKENHI-PROJECT-22710189
  • 1.  TERAO YASUHISA (00348997)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 2.  ITO Masayoshi (90344027)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 3.  Terao Chikashi (60610459)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  Woltjen Knut (50589489)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  向後 泰司 (20462682)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  河合 純 (30391923)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  鎌谷 洋一郎 (00720880)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  小井土 大 (40787561)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  村川 泰裕 (50765469)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 10.  依馬 正次 (60359578)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  井上 詞貴 (60525369)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  齊藤 紗希 (60756609)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  TAKEDA Satoru
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 14.  HAYASHIZAKI Yoshihide
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 15.  MOGUSHI Kaoru
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 16.  竹内 理
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 17.  植畑 拓也
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 18.  後藤 紗希
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results

URL: 

Are you sure that you want to link your ORCID iD to your KAKEN Researcher profile?
* This action can be performed only by the researcher himself/herself who is listed on the KAKEN Researcher’s page. Are you sure that this KAKEN Researcher’s page is your page?

この研究者とORCID iDの連携を行いますか?
※ この処理は、研究者本人だけが実行できます。

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi