KAWAJI HIDEYA 川路英哉

… Alternative Names

Kawaji Hideya 川路英哉

KAWAJI Hideya 川路英哉

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Researcher Number	20525406
Other IDs
Affiliation (Current)	2025: 公益財団法人東京都医学総合研究所, ゲノム医学研究センター, ゲノム医学研究センター長
Affiliation (based on the past Project Information) *help	2025: 公益財団法人東京都医学総合研究所, ゲノム医学研究センター, ゲノム医学研究センター長 2020 – 2023: 公益財団法人東京都医学総合研究所, その他部局等, 副参事研究員 2019 – 2023: 公益財団法人東京都医学総合研究所, ゲノム医学研究センター, 副センター長 2018: 国立研究開発法人理化学研究所, 生命医科学研究センター, 開発ユニットリーダー 2017: 理化学研究所, 予防医療・診断技術開発プログラム予防医療・ゲノミクス応用開発ユニット, 開発ユニットリーダー … More 2016 – 2017: 国立研究開発法人理化学研究所, 情報基盤センター, 開発ユニットリーダー 2011: 独立行政法人理化学研究所, 小分子RNA連携ユニット, ユニットリーダー 2010: 独立行政法人理化学研究所, LSA情報基盤施設, 研究員 Less
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics / Genome biology Except Principal Investigator Basic Section 45010:Genetics-related / Basic Section 48040:Medical biochemistry-related / Basic Section 43050:Genome biology-related / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Obstetrics and gynecology
Keywords	Principal Investigator transcriptome / ゲノミクス / トランスクリプトーム / 転写開始点 / プロモータ / promoter / データーベース / 次世代シーケンサ / エピゲノム / genomics … More / bioinformatics / database / epigenome / genome / データベース / バイオインフォマティクス / enahncer / nucleosome / epigenetics / enhancer / TSS / エピジェネティクス / 転写開始活性 / エンハンサー / プロモーター / 転写制御 / ncRNA / primary miRN / RNA干渉 / RNA silencing / non-coding RNA / primary miRNA / next generation sequencer / small RNA / transcriptional regulation / primary transcript / miRNA … More Except Principal Investigator CAGE / デグロン / アンチクリスパー / 転写調節ネットワーク / シスエレメント / 迅速CRISPR摂動 / enhancer RNA / UGT1A1 / エンハンサーRNA / PXR / 薬剤応答性エンハンサー / レポーターアッセイ / iPS細胞 / CRISPR-Cas9 / ヒトiPS細胞 / DNAリピート / ゲノム解析 / ゲノム編集 / ゲノム医療 / 自己免疫性疾患 / 全ゲノム関連解析 / エンハンサー / 遺伝多型 / 遺伝子発現 / バイオマーカー / 個別化医療 / リンパ浮腫 / トランスクリプトーム / CAGE法 / リンパ節転移 / 子宮体癌 Less

転写調節シスエレメントが形成する動的ネットワークの解析：迅速CRISPR摂動を用いて
- Principal Investigator
  
  夏目豊彰
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45010:Genetics-related
- Research Institution
  Tokyo Metropolitan Institute of Medical Science
網羅的 eRNA 発現解析による薬剤応答性エンハンサーの同定と機能解析
- Principal Investigator
  
  齊藤紗希 (後藤紗希)
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 48040:Medical biochemistry-related
- Research Institution
  Tokyo Metropolitan Institute of Medical Science
Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution
- Principal Investigator
  
  Woltjen Knut
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Kyoto University
Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases
- Principal Investigator
  
  Terao Chikashi
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Institute of Physical and Chemical Research
Reverse engineering of transcriptional regulatory regions through data modeling of transcription initiation activitiesPrincipal Investigator
- Principal Investigator
  
  KAWAJI Hideya
- Project Period (FY)
  2016 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tokyo Metropolitan Institute of Medical Science
  Institute of Physical and Chemical Research
Development of a genomics data sharing platform in AsiaPrincipal Investigator
- Principal Investigator
  
  Kawaji Hideya
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Institute of Physical and Chemical Research
Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma
- Principal Investigator
  
  TERAO YASUHISA
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Obstetrics and gynecology
- Research Institution
  Juntendo University
Comprehensive analysis of miRNA promotersPrincipal Investigator
- Principal Investigator
  
  KAWAJI Hideya
- Project Period (FY)
  2010 – 2011
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Genome biology
- Research Institution
  The Institute of Physical and Chemical Research

All 2023 2022 2020 2019 2018 2017 2016 2011

All Journal Article Presentation Patent

[Journal Article] Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning2022
- Author(s)
  Koido Masaru、Hon Chung-Chau、Koyama Satoshi、Kawaji Hideya、Murakawa Yasuhiro、Ishigaki Kazuyoshi、Ito Kaoru、Sese Jun、Parrish Nicholas F.、Kamatani Yoichiro、Carninci Piero、Terao Chikashi
- Journal Title
  
  Nature Biomedical Engineering
  
  Volume: Online Issue: 6 Pages: 830-844
- DOI
  10.1038/s41551-022-00961-8
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KF0209, KAKENHI-PROJECT-20K15773, KAKENHI-PROJECT-21K20647, KAKENHI-PROJECT-20H00462, KAKENHI-PROJECT-23K24373
[Journal Article] FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs2020
- Author(s)
  Abugessaisa Imad et al.
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 49 Issue: D1 Pages: D892-D898
- DOI
  10.1093/nar/gkaa1054
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06623, KAKENHI-PROJECT-16H02902
[Journal Article] Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites2020
- Author(s)
  Morioka Masaki Suimye、Kawaji Hideya、Nishiyori-Sueki Hiromi、Murata Mitsuyoshi、Kojima-Ishiyama Miki、Carninci Piero、Itoh Masayoshi
- Journal Title
  
  Methods Mol Biol
  
  Volume: 1 Pages: 277-301
- DOI
  10.1007/978-1-0716-0327-7_20
- ISBN
  9781071603260, 9781071603277
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H02902
[Journal Article] Update of the FANTOM web resource: expansion to provide additional transcriptome atlases2019
- Author(s)
  Lizio Marina、Abugessaisa Imad、Noguchi Shuhei、Kondo Atsushi、Hasegawa Akira、Hon Chung Chau、de Hoon Michiel、Severin Jessica、Oki Shinya、Hayashizaki Yoshihide、Carninci Piero、Kasukawa Takeya、Kawaji Hideya
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 47 Issue: D1 Pages: D752-D758
- DOI
  10.1093/nar/gky1099
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-18KT0024
[Journal Article] refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites2019
- Author(s)
  Abugessaisa Imad、Noguchi Shuhei、Hasegawa Akira、Kondo Atsushi、Kawaji Hideya、Carninci Piero、Kasukawa Takeya
- Journal Title
  
  Journal of Molecular Biology
  
  Volume: 431 Issue: 13 Pages: 2407-2422
- DOI
  10.1016/j.jmb.2019.04.045
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902
[Journal Article] NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements2019
- Author(s)
  Hirabayashi Shigeki、Bhagat Shruti、Matsuki Yu、Takegami Yujiro、Uehata Takuya、Kanemaru Ai、Itoh Masayoshi、Shirakawa Kotaro、Takaori-Kondo Akifumi、Takeuchi Osamu、Carninci Piero、Katayama Shintaro、Hayashizaki Yoshihide、Kere Juha、Kawaji Hideya、Murakawa Yasuhiro
- Journal Title
  
  Nature Genetics
  
  Volume: 51 Issue: 9 Pages: 1369-1379
- DOI
  10.1038/s41588-019-0485-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H05278, KAKENHI-PROJECT-18H03992, KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-18K15185
[Journal Article] dirHub: a trackHub configurator with directory structure projection2018
- Author(s)
  Hideya Kawaji
- Journal Title
  
  bioRxiv
  
  Volume: May Pages: 4-4
- DOI
  10.1101/314807
- Open Access
- Data Source
  KAKENHI-PROJECT-16H02902
[Journal Article] Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis.2017
- Author(s)
  Yoshida E, Terao Y, Hayashi N, Mogushi K, Arakawa A, Tanaka Y, Ito Y, Ohmiya H, Hayashizaki Y, Takeda S, Itoh M, Kawaji H.
- Journal Title
  
  Sci Rep
  
  Volume: 7(1):14160 Issue: 1 Pages: 1-15
- DOI
  10.1038/s41598-017-14418-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K10552, KAKENHI-PROJECT-15K10732, KAKENHI-PROJECT-16K15334
[Journal Article] Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.2017
- Author(s)
  Lizio M et al.
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 45 Issue: D1 Pages: D737-D743
- DOI
  10.1093/nar/gkw995
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902, KAKENHI-PROJECT-16K12529
[Patent] 子宮体がんのリンパ節転移能の評価方法2017
- Inventor(s)
  寺尾泰久、吉田惠美子、竹田省、林崎良英、伊藤昌可、川路英哉
- Industrial Property Rights Holder
  寺尾泰久、吉田惠美子、竹田省、林崎良英、伊藤昌可、川路英哉
- Industrial Property Rights Type
  特許
- Filing Date
  2017
- Overseas
- Data Source
  KAKENHI-PROJECT-15K10732
[Presentation] ヒト肝癌細胞における薬剤誘導性エンハンサーRNAの機能解析2023
- Author(s)
  齊藤紗希, 和田涼子, 川路英哉
- Organizer
  第46回日本分子生物学会
- Data Source
  KAKENHI-PROJECT-23K06396
[Presentation] Genome-wide profiling of enhancer RNA initiation events identified novel drug-responsive enhancers in human hepatocytes2023
- Author(s)
  Saki Gotoh-Saito, Ryoko Wada, Toyoaki Natsume, Hideya Kawaji
- Organizer
  第23回シトクロムP450国際会議
- Data Source
  KAKENHI-PROJECT-23K06396
[Presentation] dirHub: a trackHub configurator with directory structure projection2018
- Author(s)
  Hideya Kawaji
- Organizer
  Biology of Genome
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902
[Presentation] 転写開始イベントの高精度・高解像度プロファイルが明らかにするタンパク質非コード領域とその複雑な制御2017
- Author(s)
  川路英哉
- Organizer
  京都大学ウイルス・再生医科学研究所第3回生命情報研究会
- Invited
- Data Source
  KAKENHI-PROJECT-16H02902
[Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017
- Author(s)
  川路英哉
- Organizer
  2017年度生命科学系学会合同年次大会
- Data Source
  KAKENHI-PROJECT-16K12529
[Presentation] 転写開始イベントの高精度・高解像度プロファイルが明らかにするタンパク質非コード領域とその複雑な制御2017
- Author(s)
  川路英哉
- Organizer
  京都大学ウイルス・再生医科学研究所第3回生命情報研究会
- Invited
- Data Source
  KAKENHI-PROJECT-16K12529
[Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2017
- Author(s)
  川路英哉
- Organizer
  トーゴーの日シンポジウム2017
- Data Source
  KAKENHI-PROJECT-16K12529
[Presentation] Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma2017
- Author(s)
  Yasuhisa Terao, Emiko Yoshida, Yosuke Ito , Kazunari Fujino, Soshi Kusunoki, Tsuyoshi Ota, Masayoshi Itoh , Hideya Kawaji, Satoru Takeda
- Organizer
  The 20th ESGO International Meeting, 2017/11/04-07 Vienna Austria
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K10732
[Presentation] “dogma (model)” conscious and agnostic data sharing2016
- Author(s)
  Kawaji H.
- Organizer
  Biohackathon 2016 Symposium
- Place of Presentation
  Yamagata, Japan
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902
[Presentation] Precise annotation of TSS peaks uncovering complexity in state-dependent activation of transcription initiation2016
- Author(s)
  Kawaji H.
- Organizer
  Study Sessions on Bioinformatics and Related Topics (at IFReC, Osaka Univ.)
- Place of Presentation
  Osaka, Japan
- Invited
- Data Source
  KAKENHI-PROJECT-16H02902
[Presentation] Precise annotation of TSS peaks uncovering complexity in state-dependent activation of transcription initiation2016
- Author(s)
  Kawaji H.
- Organizer
  Genome Informatics
- Place of Presentation
  Cambridge, UK
- Year and Date
  2016-09-19
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H02902
[Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016
- Author(s)
  川路英哉
- Organizer
  トーゴーの日2016
- Place of Presentation
  東京大学弥生講堂 (東京)
- Year and Date
  2016-10-05
- Data Source
  KAKENHI-PROJECT-16K12529
[Presentation] 国際的ゲノミクスデータ統合のアジア拠点: The Asian Mirror of the UCSC Genome Browser Database2016
- Author(s)
  川路英哉
- Organizer
  第39回分子生物学会年会
- Place of Presentation
  パシフィコ横浜 (横浜)
- Data Source
  KAKENHI-PROJECT-16K12529
[Presentation] Alternative structures of primary microRNAs revealed with high-throughput sequencing2011
- Author(s)
  Kawaji H
- Organizer
  RNA2011
- Place of Presentation
  京都府京都市
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] Alternative structures of primary miRNAs2011
- Author(s)
  川路英哉
- Organizer
  NGS現場の会
- Place of Presentation
  静岡県熱海市
- Year and Date
  2011-05-29
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] Alternative structures of primary microRNAs revealed with high-throug hput sequencing2011
- Author(s)
  川路英哉
- Organizer
  中央大学理工学部物理学科セミナー
- Place of Presentation
  東京都文京区(招待講演)
- Year and Date
  2011-09-07
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] 網羅的なRNAの同定、定量、ネットワーク解析における計算機解析2011
- Author(s)
  川路英哉
- Organizer
  第14回情報論的学習理論ワークショップ
- Place of Presentation
  奈良県奈良市
- Year and Date
  2011-11-10
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] Alternative structures of primary microRNAs revealed with high-throug hput sequencing2011
- Author(s)
  川路英哉
- Organizer
  RNA2011
- Place of Presentation
  京都府京都市
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] 網羅的なRNAの同定、定量、ネットワーク解析における計算機解析2011
- Author(s)
  川路英哉
- Organizer
  第14回情報論的学習理論ワークショップ(IBIS2011)
- Place of Presentation
  奈良県奈良市(招待講演)
- Year and Date
  2011-11-10
- Data Source
  KAKENHI-PROJECT-22710189
[Presentation] Alternative structures of primary microRNAs revealed with high-throughput sequencing2011
- Author(s)
  川路英哉
- Organizer
  中央大学理工学部物理学科セミナー
- Place of Presentation
  東京都文京区
- Year and Date
  2011-09-07
- Data Source
  KAKENHI-PROJECT-22710189

1. TERAO YASUHISA (00348997)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. ITO Masayoshi (90344027)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
3. Terao Chikashi (60610459)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. Woltjen Knut (50589489)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 向後泰司 (20462682)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 河合純 (30391923)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 鎌谷洋一郎 (00720880)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 小井土大 (40787561)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 村川泰裕 (50765469)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
10. 依馬正次 (60359578)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 井上詞貴 (60525369)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 齊藤紗希 (60756609)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 夏目豊彰 (10435513)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. TAKEDA Satoru

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
15. HAYASHIZAKI Yoshihide

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. MOGUSHI Kaoru

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
17. 竹内理

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. 植畑拓也

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# of Collaborated Products: 1 results
19. 後藤紗希

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

KAWAJI HIDEYA 川路 英哉

Kawaji Hideya 川路 英哉

KAWAJI Hideya 川路 英哉

Research Projects

Research Products

Co-Researchers

転写調節シスエレメントが形成する動的ネットワークの解析：迅速CRISPR摂動を用いて

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

網羅的 eRNA 発現解析による薬剤応答性エンハンサーの同定と機能解析

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Evaluating the role of cis-regulatory tandem DNA repeats in human disease and evolution

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Reverse engineering of transcriptional regulatory regions through data modeling of transcription initiation activitiesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of a genomics data sharing platform in AsiaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Identification of biomarkers to diagnose lymph node metastasis based on gene expression patterns in primary lesion of endometrial carcinoma

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Comprehensive analysis of miRNA promotersPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites2020

Author(s)

Journal Title

DOI

ISBN

Data Source

[Journal Article] Update of the FANTOM web resource: expansion to provide additional transcriptome atlases2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites2019

Author(s)

Journal Title

DOI

Data Source

KAWAJI HIDEYA 川路英哉

Kawaji Hideya 川路英哉

KAWAJI Hideya 川路英哉

[Presentation] 転写開始イベントの高精度・高解像度プロファイルが明らかにするタンパク質非コード領域とその複雑な制御2017

[Presentation] 転写開始イベントの高精度・高解像度プロファイルが明らかにするタンパク質非コード領域とその複雑な制御2017