Mori Toshifumi 森俊文

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MORI Toshifumi 森俊文

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Researcher Number	20732043
Other IDs	https://orcid.org/0000-0003-0188-0794
Affiliation (Current)	2023: 九州大学, 先導物質化学研究所, 准教授
Affiliation (based on the past Project Information) *help	2020 – 2022: 九州大学, 先導物質化学研究所, 准教授 2014 – 2019: 分子科学研究所, 理論・計算分子科学研究領域, 助教
Review Section/Research Field	Principal Investigator Physical chemistry / Basic Section 32010:Fundamental physical chemistry-related / Science and Engineering Except Principal Investigator Broad Section E
Keywords	Principal Investigator 自由エネルギー / 分子シミュレーション / 酵素反応 / 構造変化ダイナミクス / Pin1 / フォールディング / 時計タンパク質 / 反応ダイナミクス / 構造揺らぎ / 遷移状態 … More / WWドメイン / タンパク質 / 時計タンパク質KaiC / Ubiquitin / Villin headpiece / 遷移経路 / 構造励起状態 / 反応座標探索 / 交差エントロピー / プロリン異性化酵素 / 構造ダイナミクス … More Except Principal Investigator 動的不斉誘起 / 光学活性体 / 動的キラル分子 / 静的キラル分子 / 外的キラル因子 Less

Theoretical study on the molecular mechanism of conformational transitions and catalysis in enzymesPrincipal Investigator
- Principal Investigator
  
  森俊文
- Project Period (FY)
  2022 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 32010:Fundamental physical chemistry-related
- Research Institution
  Kyushu University
Development of DYASIN: Novel Approach to Enantioenriched Chiral Molecules
- Principal Investigator
  
  友岡克彦
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section E
- Research Institution
  Kyushu University
Theoretical study of enzymatic reaction dynamicsPrincipal Investigator
- Principal Investigator
  
  Mori Toshifumi
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 32010:Fundamental physical chemistry-related
- Research Institution
  Kyushu University
  Institute for Molecular Science
Molecular Study of the interplay between chemical reactions and protein conformational changes in biomolecular systemsPrincipal Investigator
- Principal Investigator
  
  森俊文
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Institute for Molecular Science
Molecular study of the heterogeneous dynamics behind structure and function in proteinsPrincipal Investigator
- Principal Investigator
  
  MORI Toshifumi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Physical chemistry
- Research Institution
  Institute for Molecular Science
天然変性タンパク質の動的構造と機能発現機構の分子論的解明Principal Investigator
- Principal Investigator
  
  森俊文
- Project Period (FY)
  2014
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Physical chemistry
- Research Institution
  Institute for Molecular Science

All 2021 2020 2019 2018 2017 2016 2015 Other

All Journal Article Presentation

[Journal Article] Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide2020
- Author(s)
  Mori Yusuke、Okazaki Kei-ichi、Mori Toshifumi、Kim Kang、Matubayasi Nobuyuki
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 153 Pages: 054115-054115
- DOI
  10.1063/5.0009066
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-20H05221, KAKENHI-PROJECT-18H02415, KAKENHI-PROJECT-19H04206, KAKENHI-PROJECT-18K05049, KAKENHI-PROJECT-18H01188
[Journal Article] Dissecting the Dynamics during Enzyme Catalysis: A Case Study of Pin1 Peptidyl-Prolyl Isomerase2020
- Author(s)
  Mori Toshifumi、Saito Shinji
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 16 Pages: 3396-3407
- DOI
  10.1021/acs.jctc.9b01279
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K05049, KAKENHI-PROJECT-16H02254
[Journal Article] Conformational Excitation and Nonequilibrium Transition Facilitate Enzymatic Reactions: Application to Pin1 Peptidyl-Prolyl Isomerase2019
- Author(s)
  Mori Toshifumi、Saito Shinji
- Journal Title
  
  The Journal of Physical Chemistry Letters
  
  Volume: 10 Pages: 474-480
- DOI
  10.1021/acs.jpclett.8b03607
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K05049, KAKENHI-PROJECT-16H02254
[Journal Article] Theoretical Study of Reaction Dynamics in Gas and Condensed Phases2019
- Author(s)
  Mori Toshifumi
- Journal Title
  
  Molecular Science
  
  Volume: 13 Issue: 1 Pages: A0106
- DOI
  10.3175/molsci.13.a0106
  10.3175/molsci.13.A0106
- NAID
  130007696973
- ISSN
  1881-8404
- Language
  Japanese
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K05049
[Journal Article] Structure and dynamics of solvent molecules inside Polytheonamide B channel in different environments: A molecular dynamics study2018
- Author(s)
  Kalathingal Mahroof、Sumikama Takashi、Mori Toshifumi、Oiki Shigetoshi、Saito Shinji
- Journal Title
  
  PCCP
  
  Volume: 20 Pages: 3334-3348
- DOI
  10.1039/c7cp06299k
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K17768, KAKENHI-PUBLICLY-16H00759, KAKENHI-PUBLICLY-16H00856, KAKENHI-PROJECT-16H02254, KAKENHI-PROJECT-17H04017, KAKENHI-PROJECT-16K15179, KAKENHI-PROJECT-15K17813
[Journal Article] The critical role of dimer formation in monosaccharides binding to human serum albumin2018
- Author(s)
  Prapasiri Pongprayoon, Toshifumi Mori
- Journal Title
  
  Physical Chemistry Chemical Physics
  
  Volume: 20 Pages: 3249-3257
- DOI
  10.1039/c7cp06324e
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H00856, KAKENHI-PROJECT-15K17813
[Journal Article] Molecular Mechanism Behind the Fast Folding/Unfolding Transitions of Villin Headpiece Subdomain: Hierarchy and Heterogeneity2016
- Author(s)
  Toshifumi Mori, Shinji Saito
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 120 Pages: 11683-11691
- DOI
  10.1021/acs.jpcb.6b08066
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PUBLICLY-16H00856, KAKENHI-PROJECT-16H02254, KAKENHI-PROJECT-15K17813
[Journal Article] 3D-RISM-MP2 Approach to Hydration Structure of Pt(II) and Pd(II) Complexes: Unusu-al H-Ahead Mode vs Usual O-Ahead One2016
- Author(s)
  S. Aono, T. Mori, S. Sakaki
- Journal Title
  
  J. Chem. Theory Comput.
  
  Volume: 12 Pages: 1189-1206
- DOI
  10.1021/acs.jctc.5b01137
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813, KAKENHI-PUBLICLY-15H00940, KAKENHI-PROJECT-15H03770
[Journal Article] Dynamic heterogeneity in the folding/unfolding transitions of FiP352015
- Author(s)
  Toshifumi Mori, Shinji Saito
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 142 Pages: 135101-135101
- DOI
  10.1063/1.4916641
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26888019, KAKENHI-PROJECT-15K17813, KAKENHI-PROJECT-25288011
[Journal Article] Atomic-scale origins of slowness in the cyanobacterial circadian clock.2015
- Author(s)
  Abe, J., Hiyama, T. B., Mukaiyama, A., Son, S., Mori, T., Saito, S., Osako, M., Wolanin, J., Yamashita, E., Kondo, T. and Akiyama S.*
- Journal Title
  
  Science
  
  Volume: 349 Pages: 312-316
- DOI
  10.1126/science.1261040
- Description
  【掲載確定】
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813, KAKENHI-PUBLICLY-26102544, KAKENHI-PROJECT-25288011, KAKENHI-PROJECT-25291039, KAKENHI-PROJECT-24000016
[Presentation] 生体分子の構造形成と機能発現の動的分子機構2021
- Author(s)
  森　俊文
- Organizer
  第一回生体分子シミュレーション・モデリング研究会
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] Crucial role of conformational excitation and nonequilibrium transition in enzyme catalysis: Application to Pin1 peptidyl-prolyl isomerase2019
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  Joint 12th EBSA and 10th ICBP-IUPAB Biophysics Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] 気相および凝縮系における反応ダイナミクスの理論的解明2019
- Author(s)
  森俊文
- Organizer
  第13回分子科学討論会
- Invited
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] プロリン異性化酵素の動的反応機構と構造励起状態の重要性2019
- Author(s)
  森俊文、斉藤真司
- Organizer
  第22回理論化学討論会
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] 分子シミュレーションから見たタンパク質の構造ダイナミクスと機能発現の分子機構2019
- Author(s)
  森俊文
- Organizer
  ワークショップ「非共有結合系の分子科学：計測技術から探る生体分子科学の新展開」
- Invited
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] Crucial role of conformational excitation in enzyme catalysis of Pin12019
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  第57回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] Hierarchy and heterogeneity in protein folding and enzyme catalysis2018
- Author(s)
  Toshifumi Mori
- Organizer
  2nd workshop on Advances in Theory and Computation of Complex Systems - Biological Systems
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K05049
[Presentation] Crucial role of enzyme dynamics in the catalytic reaction mechanism of Pin12017
- Author(s)
  Toshifumi MORI, Shinji SAITO
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] タンパク質のフォールディングと酵素反応の反応ダイナミクス2017
- Author(s)
  森俊文
- Organizer
  第二回計算分子科学の若手理論研究会
- Place of Presentation
  金沢工業大学, 金沢, 石川
- Year and Date
  2017-03-03
- Invited
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Transition path sampling法による酵素反応の遷移ダイナミクス解析2017
- Author(s)
  森俊文
- Organizer
  「レア・イベントの計算科学」研究会
- Invited
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] タンパク質のフォールディングと酵素反応の反応ダイナミクス2017
- Author(s)
  森俊文
- Organizer
  第2回計算分子科学の若手理論研究会
- Place of Presentation
  金沢工業大学, 金沢, 石川
- Year and Date
  2017-03-03
- Invited
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] Crucial role of enzyme dynamics in the catalytic reaction mechanism of Pin12017
- Author(s)
  Toshifumi MORI, Shinji SAITO
- Organizer
  第55回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Static and Dynamic Roles of Proteins in Proline Isomerization Reactions2017
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  Biophysical Society 61st Annual Meeting
- Place of Presentation
  New Orleans, LA, USA
- Year and Date
  2017-02-11
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] プロリン異性化酵素Pin1における酵素反応の反応ダイナミクス2017
- Author(s)
  森俊文, 斉藤真司
- Organizer
  第20回理論化学討論会
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Deciphering the heterogeneous dynamics of proteins from the analysis of millisecond-long molecular dynamics simulations2017
- Author(s)
  Toshifumi MORI, Shinji SAITO
- Organizer
  第55回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] プロリン異性化酵素Pin1における酵素反応の反応ダイナミクス2017
- Author(s)
  森俊文, 斉藤真司
- Organizer
  第20回理論化学討論会
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] Deciphering the heterogeneous dynamics of proteins from the analysis of millisecond-long molecular dynamics simulations2017
- Author(s)
  Toshifumi MORI, Shinji SAITO
- Organizer
  第55回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Transition path sampling法による酵素反応の遷移ダイナミクス解析2017
- Author(s)
  森俊文
- Organizer
  「レア・イベントの計算科学」研究会
- Invited
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] Static and Dynamic Roles of Proteins in Proline Isomerization Reactions2017
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  Biophysical Society 61st Annual Meeting
- Place of Presentation
  New Orleans, LA, USA
- Year and Date
  2017-02-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Molecular origin of heterogeneity and hierarchy behind protein folding2016
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場, つくば市, 茨城
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Molecular origin of heterogeneity and hierarchy behind protein folding2016
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  第54回日本生物物理学会年会
- Place of Presentation
  つくば国際会議場, つくば市, 茨城
- Year and Date
  2016-11-25
- Data Source
  KAKENHI-PUBLICLY-16H00856
[Presentation] Molecular mechanism of transition dynamics in protein folding2016
- Author(s)
  Toshifumi Mori
- Organizer
  Molecular Machines of Life: Simulation Meets Experiment
- Place of Presentation
  Hong Kong, China
- Year and Date
  2016-05-23
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Dynamic heterogeneity and the role of non-native contacts in the protein folding/unfolding transitions2016
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  60th Annual Meeting of Biophysical Society
- Place of Presentation
  Los Angeles, LA, USA
- Year and Date
  2016-02-27
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] 光化学反応の多状態遷移ダイナミクスと時間分解光電子スペクトル2015
- Author(s)
  森俊文
- Organizer
  研究会「非断熱量子動力学とその周辺」
- Place of Presentation
  東京大学, 目黒区, 東京
- Year and Date
  2015-09-20
- Invited
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Theoretical stuy of the dynamic protein folding/unfolding transition mechanisms2015
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  第53回生物物理学会年会
- Place of Presentation
  金沢大学, 金沢, 石川
- Year and Date
  2015-09-13
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] タンパク質のフォールディング過程の動的多様性の理論的研究2015
- Author(s)
  森俊文, 斉藤真司
- Organizer
  第9回分子科学討論会
- Place of Presentation
  東京工業大学, 目黒区, 東京
- Year and Date
  2015-09-16
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Theoretical study of the dynamic heterogeneity in the protein folding/unfolding transitions2015
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  10th European Biophysics Congress (EBSA 2015)
- Place of Presentation
  Dresden, Germany
- Year and Date
  2015-07-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] タンパク質のフォールディング過程の動的構造解析2015
- Author(s)
  森俊文
- Organizer
  凝縮系の理論化学
- Place of Presentation
  琉球大学（沖縄県中頭郡西原町）
- Year and Date
  2015-03-09
- Invited
- Data Source
  KAKENHI-PROJECT-26888019
[Presentation] Theoretical study of the dynamic heterogeneity in protein conformational dynamics2015
- Author(s)
  Toshifumi Mori, Shinji Saito
- Organizer
  PACIFICHEM 2015
- Place of Presentation
  Honolulu, HI, USA
- Year and Date
  2015-12-15
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K17813
[Presentation] Theoretical study of the protein folding dynamics from a time correlation function approach
- Author(s)
  森俊文、斉藤真司
- Organizer
  Biophysical Society 59th Annual Meeting
- Place of Presentation
  Baltimore Convention Center (Baltimore, MD, USA)
- Year and Date
  2015-02-07 – 2015-02-11
- Data Source
  KAKENHI-PROJECT-26888019

1. 友岡克彦 (70207629)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 青木百合子 (10211690)

# of Collaborated Projects: 1 results

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3. 入江亮 (70243889)

# of Collaborated Projects: 1 results

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4. 浅野周作 (30827522)

# of Collaborated Projects: 1 results

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5. KIM Kang

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6. 齊藤真司

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# of Collaborated Products: 6 results
7. 炭竈享司

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8. 老木成稔

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9. 岡崎圭一

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10. 松林伸幸

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11. 秋山修志

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12. 近藤孝男

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13. 榊茂好

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14. 青野信治

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Mori Toshifumi 森 俊文

MORI Toshifumi 森 俊文

Research Projects

Research Products

Co-Researchers

Theoretical study on the molecular mechanism of conformational transitions and catalysis in enzymesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of DYASIN: Novel Approach to Enantioenriched Chiral Molecules

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Theoretical study of enzymatic reaction dynamicsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Molecular Study of the interplay between chemical reactions and protein conformational changes in biomolecular systemsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Molecular study of the heterogeneous dynamics behind structure and function in proteinsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

天然変性タンパク質の動的構造と機能発現機構の分子論的解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Dissecting the Dynamics during Enzyme Catalysis: A Case Study of Pin1 Peptidyl-Prolyl Isomerase2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Conformational Excitation and Nonequilibrium Transition Facilitate Enzymatic Reactions: Application to Pin1 Peptidyl-Prolyl Isomerase2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Theoretical Study of Reaction Dynamics in Gas and Condensed Phases2019

Author(s)

Journal Title

DOI

NAID

ISSN

Language

Data Source

[Journal Article] Structure and dynamics of solvent molecules inside Polytheonamide B channel in different environments: A molecular dynamics study2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The critical role of dimer formation in monosaccharides binding to human serum albumin2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Molecular Mechanism Behind the Fast Folding/Unfolding Transitions of Villin Headpiece Subdomain: Hierarchy and Heterogeneity2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 3D-RISM-MP2 Approach to Hydration Structure of Pt(II) and Pd(II) Complexes: Unusu-al H-Ahead Mode vs Usual O-Ahead One2016

Mori Toshifumi 森俊文

MORI Toshifumi 森俊文