Uesaka Masahiro 上坂将弘

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Masahiro Uesaka 上坂将弘

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Researcher Number	20756499
Other IDs
Affiliation (Current)	2025: 東北大学, 生命科学研究科, 助教
Affiliation (based on the past Project Information) *help	2025: 東北大学, 生命科学研究科, 助教 2022 – 2023: 東北大学, 生命科学研究科, 助教 2018 – 2022: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 研究員
Review Section/Research Field	Principal Investigator Basic Section 44020:Developmental biology-related / Transformative Research Areas, Section (III) Except Principal Investigator Biological Sciences
Keywords	Principal Investigator バイオインフォマティクス / EvoDevo / エピジェネティクス / 反復説 / 進化発生学 / 遺伝子発現制御 / 発生学 / 比較エピゲノム / 発生 / 進化 … More Except Principal Investigator … More 進化発生学 / 進化可能性 / エピジェネティクス / ゲノム / 比較発生 / 砂時計モデル / 反復説 / EvoDevo / バイオインフォマティクス / 発生 / 安定性 / 発生生物学 / 進化生物学 / 頑健性 / 発生安定性 / ゆらぎ / 発生拘束 / 進化発生生物学 / 進化 Less

深層学習による形態予測から迫る鳥類の翼の進化可能性変動史Principal Investigator
- Principal Investigator
  
  上坂将弘
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (B)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Tohoku University
脊椎動物器官発生における遺伝子制御活性解析による進化と発生の反復傾向の実体解明Principal Investigator
- Principal Investigator
  
  上坂将弘
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 44020:Developmental biology-related
- Research Institution
  Tohoku University
Testing the recapitulation tendency in vertebrate embryogenesis by analyzing developmental patterns of gene regulatory activitiesPrincipal Investigator
- Principal Investigator
  
  Masahiro Uesaka
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 44020:Developmental biology-related
- Research Institution
  Institute of Physical and Chemical Research
Measuring molecular fluctuation of chordate developmental system and its contribution toward evolutionary conservation
- Principal Investigator
  
  Irie Naoki
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo

All 2024 2023 2022 2021 2020 2019 2018 2017

All Journal Article Presentation

[Journal Article] Genomic screening of fish‐specific genes in gnathostomes and their functions in fin development2024
- Author(s)
  Kudoh Hidehiro、Yonei‐Tamura Sayuri、Abe Gembu、Iwakiri Junichi、Uesaka Masahiro、Makino Takashi、Tamura Koji
- Journal Title
  
  Development, Growth & Differentiation
  
  Volume: 66 Issue: 3 Pages: 235-247
- DOI
  10.1111/dgd.12918
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K15133, KAKENHI-PROJECT-22K06232, KAKENHI-PROJECT-21K19202, KAKENHI-PROJECT-22KJ0186, KAKENHI-PUBLICLY-21H05768, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23890, KAKENHI-PROJECT-23K28183
[Journal Article] Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences2024
- Author(s)
  Yu Daqi, Ren Yandong, Uesaka Masahiro, Beavan Alan J. S., Muffato Matthieu, et al.
- Journal Title
  
  Nature Ecology & Evolution
  
  Volume: 8 Issue: 3 Pages: 519-535
- DOI
  10.1038/s41559-023-02299-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15133, KAKENHI-PROJECT-23K05881
[Journal Article] Distinguishing Evolutionary Conservation from Derivedness.2022
- Author(s)
  Jason Cheok Kuan Leong*, Masahiro Uesaka, Naoki Irie*
- Journal Title
  
  Life
  
  Volume: 12(3), 440 Issue: 3 Pages: 440-440
- DOI
  10.3390/life12030440
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-17H06387
[Journal Article] Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms2021
- Author(s)
  Jason Cheok Kuan Leong*, Yongxin Li, Masahiro Uesaka, Yui Uchida, Akihito Omori, Meng Hao, Wenting Wan, Yang Dong, Yandong RenSi Zhang, Tao Zeng, Fayou Wang, Luonan Chen, Gary Wessel, Brian T. Livingston, Cynthia Bradham, Wen Wang, Naoki Irie*
- Journal Title
  
  Front. Cell Dev. Biol.
  
  Volume: 26
- DOI
  10.3389/fcell.2021.749963
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06387
[Journal Article] The developmental hourglass model and recapitulation: An attempt to integrate the two models.2021
- Author(s)
  Uesaka, M., Kuratani, S., and Irie, N.
- Journal Title
  
  J Exp Zool B Mol Dev Evol.
  
  Volume: in press Issue: 1-2 Pages: 1-11
- DOI
  10.1002/jez.b.23027
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06385, KAKENHI-PROJECT-18K14711, KAKENHI-PLANNED-17H06387
[Journal Article] How can recapitulation be reconciled with modern concepts of evolution?2021
- Author(s)
  Kuratani S, Uesaka M, Irie N.
- Journal Title
  
  J Exp Zool B Mol Dev Evol.
  
  Volume: in press Issue: 1-2 Pages: 1-8
- DOI
  10.1002/jez.b.23020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06385, KAKENHI-PROJECT-18K14711, KAKENHI-PLANNED-17H06387
[Journal Article] Genomic insights of body plan transitions from bilateral to pentameric symmetry in Echinoderms2020
- Author(s)
  Yongxin Li, et al. (35名中 35番目 Naoki Irie*)
- Journal Title
  
  Communications Biology
  
  Volume: 3:371 Issue: 1 Pages: 371-371
- DOI
  10.1038/s42003-020-1091-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06387, KAKENHI-PROJECT-18K14711
[Journal Article] Recapitulation-like developmental transitions of chromatin accessibility in vertebrates2019
- Author(s)
  Uesaka Masahiro、Kuratani Shigeru、Takeda Hiroyuki、Irie Naoki
- Journal Title
  
  Zoological Letters
  
  Volume: 5 Issue: 1 Pages: 33-33
- DOI
  10.1186/s40851-019-0148-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14711, KAKENHI-PLANNED-17H06387, KAKENHI-PLANNED-17H06385
[Journal Article] Evolutionary transition in accessible chromatin landscapes during vertebrate embryogenesis2018
- Author(s)
  Uesaka Masahiro、Kuratani Shigeru、Takeda Hiroyuki、Irie Naoki
- Journal Title
  
  bioRxiv
  
  Volume: - Pages: 1-20
- DOI
  10.1101/481309
- Open Access
- Data Source
  KAKENHI-PROJECT-18K14711
[Journal Article] Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos2018
- Author(s)
  Yui Uchida, Masahiro Uesaka, Takayoshi Yamamoto, Hiroyuki Takeda and Naoki Irie
- Journal Title
  
  EvoDevo
  
  Volume: 9:7 Issue: 1 Pages: 1-11
- DOI
  10.1186/s13227-018-0095-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H05603, KAKENHI-PROJECT-15J06414, KAKENHI-PROJECT-17J06225, KAKENHI-PLANNED-17H06387
[Journal Article] Constrained vertebrate evolution by pleiotropic genes.2017
- Author(s)
  Hu H, Uesaka M, Guo S, Shimai K, Lu TM, Li F, Fujimoto S, Ishikawa M, Liu S, Sasagawa Y, Zhang G, Kuratani S, Yu JK, Kusakabe TG, Khaitovich P, Irie N; EXPANDE Consortium.
- Journal Title
  
  Nat Ecol Evol
  
  Volume: 1 Issue: 11 Pages: 1722-1730
- DOI
  10.1038/s41559-017-0318-0
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06385, KAKENHI-PLANNED-17H06387, KAKENHI-PROJECT-15H02416, KAKENHI-PROJECT-16H04724, KAKENHI-PROJECT-15H05603, KAKENHI-PROJECT-15J06414
[Presentation] The developmental hourglass model and the vertebrate body plan conservation: insights from single-cell level transcriptome analysis2023
- Author(s)
  Masahiro Uesaka, Jason Cheok Kuan Leong, Shigeru Kuratani, Naoki Irie
- Organizer
  The 3rd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K15133
[Presentation] 比較オミクス解析から迫る個体発生と進化の関係性2023
- Author(s)
  上坂将弘、倉谷滋、入江直樹
- Organizer
  NGS EXPO 2023
- Invited
- Data Source
  KAKENHI-PROJECT-22K15133
[Presentation] Testing the recapitulative pattern in vertebrate embryogenesis from the perspective of gene regulation2020
- Author(s)
  Masahiro Uesaka
- Organizer
  JSDB Online Trial Meeting 2020
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14711
[Presentation] Testing the recapitulative pattern in vertebrate embryogenesis from the perspective of gene regulation2020
- Author(s)
  Masahiro Uesaka
- Organizer
  The 53rd JSDB/APDBN Meeting
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14711
[Presentation] 脊椎動物の発生過程は進化を反復するのか？2019
- Author(s)
  上坂将弘、倉谷滋、武田洋幸、入江直樹
- Organizer
  日本進化学会第21回大会
- Invited
- Data Source
  KAKENHI-PROJECT-18K14711
[Presentation] 脊椎動物の胚発生における反復説の検証2019
- Author(s)
  上坂将弘、倉谷滋、武田洋幸、入江直樹
- Organizer
  日本動物学会第90回大阪大会
- Invited
- Data Source
  KAKENHI-PROJECT-18K14711
[Presentation] 脊椎動物発生のオープンクロマチン動態に見られた系統進化の反復的パターン2019
- Author(s)
  上坂将弘、倉谷滋、武田洋幸、入江直樹
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18K14711

1. Irie Naoki (10536121)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
2. 倉谷滋

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results

Uesaka Masahiro 上坂 将弘

Masahiro Uesaka 上坂 将弘

Research Projects

Research Products

Co-Researchers

深層学習による形態予測から迫る鳥類の翼の進化可能性変動史Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

脊椎動物器官発生における遺伝子制御活性解析による進化と発生の反復傾向の実体解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Testing the recapitulation tendency in vertebrate embryogenesis by analyzing developmental patterns of gene regulatory activitiesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Measuring molecular fluctuation of chordate developmental system and its contribution toward evolutionary conservation

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Genomic screening of fish‐specific genes in gnathostomes and their functions in fin development2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Distinguishing Evolutionary Conservation from Derivedness.2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The developmental hourglass model and recapitulation: An attempt to integrate the two models.2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] How can recapitulation be reconciled with modern concepts of evolution?2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Genomic insights of body plan transitions from bilateral to pentameric symmetry in Echinoderms2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Recapitulation-like developmental transitions of chromatin accessibility in vertebrates2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Evolutionary transition in accessible chromatin landscapes during vertebrate embryogenesis2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Constrained vertebrate evolution by pleiotropic genes.2017

Uesaka Masahiro 上坂将弘

Masahiro Uesaka 上坂将弘