Shen Shang 沈尚

Researcher Number	20882426
Other IDs	https://orcid.org/0000-0002-4293-8967
Affiliation (Current)	2025: 立命館大学, 理工学部, 講師
Affiliation (based on the past Project Information) *help	2023 – 2025: 立命館大学, 理工学部, 講師 2021 – 2023: 国立研究開発法人国立環境研究所, 地域環境保全領域, JSPS特別研究員 2020: 京都大学, 工学研究科, 特別研究員(PD) 2020: 京都大学, 工学研究科, 研究員 2019: 京都大学, 工学研究科, 特別研究員(DC2)
Review Section/Research Field	Principal Investigator Medium-sized Section 63:Environmental analyses and evaluation and related fields / Basic Section 63010:Environmental dynamic analysis-related / Basic Section 22060:Environmental systems for civil engineering-related Except Principal Investigator Basic Section 63010:Environmental dynamic analysis-related / Basic Section 22060:Environmental systems for civil engineering-related / Medium-sized Section 22:Civil engineering and related fields
Keywords	Principal Investigator 琵琶湖 / 宿主細菌 / 宿主予測 / 季節変動 / 多様性 / ウイルスメタゲノム / メタゲノム解析 / バクテリオファージ / 流入河川 / 溶存態DNA … More / 薬剤耐性遺伝子 / 流域 / ウイルス / 細菌 … More Except Principal Investigator 琵琶湖 / 下水処理 / 薬剤耐性 / ファージ / ラジカル / 貧酸素化 / 底質 / 物質循環 / メタゲノム解析 / 細胞外遺伝子 / 微生物 / 窒素循環 / D-アミノ酸 / 有機物動態 / 下水疫学 / 国際比較 / 新型コロナウイルス / ウイルス分流 / 湖沼難分解性有機物 / 単離 / バクテリオファージ / 溶菌由来有機物 / 難分解性有機物 / 溶菌 / ウイルス / 細菌 / 湖沼 Less

Radicals produced by hypoxic water masses drive unknown material cycles.
- Principal Investigator
  
  布施泰朗
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Kyoto Institute of Technology
放射性同位体を全く使用しない高感度なウイルス生産速度測定法の開発Principal Investigator
- Principal Investigator
  
  沈尚
- Project Period (FY)
  2025 – 2026
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 63:Environmental analyses and evaluation and related fields
- Research Institution
  Ritsumeikan University
Exploring the potential of bacteria-derived submicron particles to drive biological pumps
- Principal Investigator
  
  山口保彦
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Lake Biwa Environmental Research Institute
Dynamics of antimicrobial resistance genes focusing on their carrier microbes and viruses
- Principal Investigator
  
  本多了
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 22060:Environmental systems for civil engineering-related
- Research Institution
  Kanazawa University
メタゲノム解析で描く薬剤耐性遺伝子の分布図Principal Investigator
- Principal Investigator
  
  沈尚
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 22060:Environmental systems for civil engineering-related
- Research Institution
  Ritsumeikan University
  National Institute for Environmental Studies
Wastewater-based genomic epidemiology on international comparison and transportation of SARS-CoV-2 variants and antimicrobial resistance
- Principal Investigator
  
  本多了
- Project Period (FY)
  2021 – 2024
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 22:Civil engineering and related fields
- Research Institution
  Kanazawa University
Do viruses accelerate the production of refractory dissolved organic matter in freshwater lakes
- Principal Investigator
  
  Shimizu Yoshihisa
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Kyoto University
メタゲノム解析に基づくウイルスと宿主細菌の動態解明Principal Investigator
- Principal Investigator
  
  沈尚
- Project Period (FY)
  2019 – 2020
- Research Category
  
  Grant-in-Aid for JSPS Fellows
- Review Section
  
  Basic Section 63010:Environmental dynamic analysis-related
- Research Institution
  Kyoto University

All 2024 2023 2022 2021 2020

All Journal Article Presentation

[Journal Article] Virus?prokaryote infection pairs associated with prokaryotic production in a freshwater lake2024
- Author(s)
  Shen Shang、Tominaga Kento、Tsuchiya Kenji、Matsuda Tomonari、Yoshida Takashi、Shimizu Yoshihisa
- Journal Title
  
  mSystems
  
  Volume: 9 Issue: 2
- DOI
  10.1128/msystems.00906-23
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K14351, KAKENHI-PROJECT-22KJ3109, KAKENHI-PROJECT-23K11412, KAKENHI-PROJECT-21H05057
[Journal Article] Identification of key virus?prokaryote infection pairs that contribute to viral shunt in a freshwater lake2023
- Author(s)
  Shen Shang、Tominaga Kento、Tsuchiya Kenji、Matsuda Tomonari、Yoshida Takashi、Shimizu Yoshihisa
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2023.02.05.527221
- Open Access
- Data Source
  KAKENHI-PROJECT-22K14351, KAKENHI-PROJECT-21H05057, KAKENHI-PROJECT-22KJ3109
[Journal Article] Complete Genome Sequence of a Phage Infecting Sphingomonadaceae2022
- Author(s)
  Shen Shang、Anazawa Tetsunobu、Matsuda Tomonari、Shimizu Yoshihisa
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 11 Issue: 7
- DOI
  10.1128/mra.00366-22
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Journal Article] Cyanobacteria And Their Phages Revealed Through Metagenomic Analysis In A Freshwater Lake2022
- Author(s)
  Shen Shang、Tominaga Kento、Tsuchiya Kenji、Matsuda Tomonari、Yoshida Takashi、Shimizu Yoshihisa
- Journal Title
  
  Proceedings of the 6th International Conference of Recent Trends in Environmental Science and Engineering
  
  Volume: -
- DOI
  10.11159/rtese22.120
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Journal Article] Draft Genome Sequences of Sphingomonadaceae Strains Isolated from a Freshwater Lake2022
- Author(s)
  Shen Shang、Anazawa Tetsunobu、Matsuda Tomonari、Shimizu Yoshihisa
- Journal Title
  
  Microbiology Resource Announcements
  
  Volume: 11 Issue: 5
- DOI
  10.1128/mra.00070-22
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Journal Article] Seasonal Variation in Viral Infection Rates and Cell Sizes of Infected Prokaryotes in a Large and Deep Freshwater Lake (Lake Biwa, Japan)2021
- Author(s)
  Shang Shen, Yoshihisa Shimizu
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 12:624980
- DOI
  10.3389/fmicb.2021.624980
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H04323
[Journal Article] Contribution of large bacteria to bacterial biomass in a deep freshwater lake (Lake Biwa, Japan)2020
- Author(s)
  Shen S、Shimizu Y
- Journal Title
  
  Aquatic Microbial Ecology
  
  Volume: 85 Pages: 131-139
- DOI
  10.3354/ame01949
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19J14985
[Journal Article] 琵琶湖に棲息する細菌とウイルスの生態2020
- Author(s)
  沈尚
- Journal Title
  
  環境衛生工学研究
  
  Volume: 34 Pages: 46-51
- NAID
  40022432818
- Data Source
  KAKENHI-PROJECT-19J14985
[Presentation] 薬剤耐性遺伝子を保有する細菌およびウイルスの琵琶湖・流入河川中における分布2024
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、末吉正尚、松田知成、清水芳久
- Organizer
  第58回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-22K14351
[Presentation] 薬剤耐性遺伝子を保有する細菌およびウイルスの琵琶湖・流入河川中における分布2023
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、末吉正尚、松田知成、清水芳久
- Organizer
  第58回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-21KK0073
[Presentation] 太陽光利用オンサイト処理に向けた光触媒層/セラミック平膜処理によるウイルスへの除去効果2023
- Author(s)
  丹後元秀、本間亮介、沈尚、竹内悠、鮫島正一、西村文武、新井喜明
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 水環境中のウイルス・溶存態DNAの濃縮・分離法の検討2023
- Author(s)
  和田浩幸、沈尚、井原賢、西村文武
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-22K14351
[Presentation] 細菌およびウイルスが保有する薬剤耐性遺伝子の存在実態琵琶湖流域を対象として2023
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、松田知成、清水芳久
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-22K14351
[Presentation] 細菌およびウイルスが保有する薬剤耐性遺伝子の存在実態 -琵琶湖流域を対象として-2023
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、松田知成、清水芳久
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-21KK0073
[Presentation] 水環境中のウイルス・溶存態DNAの濃縮・分離法の検討2023
- Author(s)
  和田浩幸、沈尚、井原賢、西村文武
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 細菌およびウイルスが保有する薬剤耐性遺伝子の存在実態〜琵琶湖流域を対象として〜2023
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、松田知成、清水芳久
- Organizer
  第57回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 薬剤耐性遺伝子を保有する細菌およびウイルスの琵琶湖・流入河川中における分布2023
- Author(s)
  沈尚、茂田空、杉江由規、霜鳥孝一、末吉正尚、松田知成、清水芳久
- Organizer
  第58回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-23K26229
[Presentation] メタゲノム解析で明らかにする下水ウイルスの存在実態2022
- Author(s)
  茂田空, 沈尚, 松田知成, 清水芳久
- Organizer
  第56回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] メタゲノム解析で明らかにする下水ウイルスの存在実態2022
- Author(s)
  茂田空, 沈尚, 松田知成, 清水芳久
- Organizer
  第56回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-21KK0073
[Presentation] メタゲノム解析で明らかにする下水中のウイルスの多様性2022
- Author(s)
  茂田空, 丹後元秀, 沈尚, 松田知成, 清水芳久
- Organizer
  第44回京都大学環境衛生工学研究会シンポジウム
- Data Source
  KAKENHI-PROJECT-21KK0073
[Presentation] Cyanobacteria and their phages revealed through metagenomic analysis in a freshwater lake2022
- Author(s)
  Shang Shen, Kento Tominaga, Kenji Tsuchiya, Tomonari Matsuda, Takashi Yoshida, Yoshihisa Shimizu
- Organizer
  The 6th International Conference of Recent Trends in Environmental Science and Engineering (RTESE'22)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K14351
[Presentation] メタゲノム解析を用いたアクティブな細菌-ウイルス感染関係の推定2022
- Author(s)
  沈尚, 富永賢人, 土屋健司, 松田知成, 吉田天士, 清水芳久
- Organizer
  第56回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] メタゲノム解析で明らかにする下水中のウイルスの多様性2022
- Author(s)
  茂田空, 丹後元秀, 沈尚, 松田知成, 清水芳久
- Organizer
  第44回京都大学環境衛生工学研究会シンポジウム
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] メタゲノム解析で明らかにする下水中のウイルスの多様性2022
- Author(s)
  茂田空, 丹後元秀, 沈尚, 松田知成, 清水芳久
- Organizer
  第44回京都大学環境衛生工学研究会シンポジウム
- Data Source
  KAKENHI-PROJECT-22K14351
[Presentation] メタゲノム解析を用いたアクティブな細菌－ウイルス感染関係の推定2022
- Author(s)
  沈尚, 富永賢人, 土屋健司, 松田知成, 吉田天士, 清水芳久
- Organizer
  第56回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] Cyanobacteria and their phages revealed through metagenomic analysis in a freshwater lake2022
- Author(s)
  Shang Shen, Kento Tominaga, Kenji Tsuchiya, Tomonari Matsuda, Takashi Yoshida, Yoshihisa Shimizu
- Organizer
  The 6th International Conference of Recent Trends in Environmental Science and Engineering (RTESE'22)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 疑似太陽光照射下における光触媒ケーキ層/セラミック膜処理システムによる下水処理中ウイルス粒子の消失と不活化に関する基礎検討2021
- Author(s)
  丹後元秀, 本間亮介, 竹内悠, 沈尚, 朴耿洙, 中田典秀, 田中宏明, 鮫島正一
- Organizer
  第43回京都大学環境衛生工学研究会シンポジウム
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] Do viruses accelerate the production of refractory dissolved organic matter in Lake Biwa, Japan?2021
- Author(s)
  Shang Shen
- Organizer
  35th Congress of the International Society of Limnology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 疑似太陽光照射下における可視光応答光触媒ケーキ層/膜処理システムによる大腸菌ファージ MS2 の不活化効果の評価2021
- Author(s)
  丹後元秀, 本間亮介, 竹内悠, 沈尚, 朴耿洙, 中田典秀, 田中宏明, 鮫島正一
- Organizer
  第55回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 琵琶湖水中における細菌感染性ウイルスの動態2021
- Author(s)
  沈尚, 富永賢人, 土屋健司, 松田知成, 吉田天士, 清水芳久
- Organizer
  日本腐食物質学会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] Viral losses by sunlight exposure in euphotic and aphotic layers of a freshwater lake2021
- Author(s)
  Shang Shen, Ryosuke Homma, Yusuke Okazaki, Kento Tominaga, Takashi Yoshida and Yoshihisa Shimizu
- Organizer
  10th Aquatic Virus Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04323
[Presentation] 琵琶湖ウイルスの多様性と季節変動2020
- Author(s)
  沈尚, 富永賢人, 松田知成, 吉田天士, 清水芳久
- Organizer
  日本地球化学会第67回オンライン年会
- Data Source
  KAKENHI-PROJECT-19J14985
[Presentation] メタゲノム解析で明らかにする琵琶湖ウイルスの多様性2020
- Author(s)
  沈尚、富永賢人、松田知成、吉田天士、清水芳久
- Organizer
  第54回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-19J14985

1. 本多了 (40422456)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 松浦哲久 (90771585)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 山口保彦 (50726221)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 早川和秀 (80291178)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. 布施泰朗 (90303932)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. 初雪 (50983889)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
7. Shimizu Yoshihisa (20226260)

# of Collaborated Projects: 1 results

# of Collaborated Products: 12 results
8. 松田知成 (50273488)

# of Collaborated Projects: 1 results

# of Collaborated Products: 10 results
9. 阿部貴志 (30390628)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 岡崎友輔 (40823745)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 木庭啓介 (90311745)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 西川洋平 (90867277)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 前田耕治 (00229303)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 三宅祐輔 (20728050)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 藤嶽暢英 (50243332)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 中野伸一 (50270723)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 木田森丸 (70903730)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 近藤美由紀 (30467211)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Shen Shang 沈 尚

Research Projects

Research Products

Co-Researchers

Radicals produced by hypoxic water masses drive unknown material cycles.

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

放射性同位体を全く使用しない高感度なウイルス生産速度測定法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Exploring the potential of bacteria-derived submicron particles to drive biological pumps

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Dynamics of antimicrobial resistance genes focusing on their carrier microbes and viruses

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

メタゲノム解析で描く薬剤耐性遺伝子の分布図Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Wastewater-based genomic epidemiology on international comparison and transportation of SARS-CoV-2 variants and antimicrobial resistance

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Do viruses accelerate the production of refractory dissolved organic matter in freshwater lakes

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

メタゲノム解析に基づくウイルスと宿主細菌の動態解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Virus?prokaryote infection pairs associated with prokaryotic production in a freshwater lake2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Identification of key virus?prokaryote infection pairs that contribute to viral shunt in a freshwater lake2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Complete Genome Sequence of a Phage Infecting Sphingomonadaceae2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cyanobacteria And Their Phages Revealed Through Metagenomic Analysis In A Freshwater Lake2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Draft Genome Sequences of Sphingomonadaceae Strains Isolated from a Freshwater Lake2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Seasonal Variation in Viral Infection Rates and Cell Sizes of Infected Prokaryotes in a Large and Deep Freshwater Lake (Lake Biwa, Japan)2021

Author(s)

Journal Title

Shen Shang 沈尚

[Presentation] 細菌およびウイルスが保有する薬剤耐性遺伝子の存在実態琵琶湖流域を対象として2023

[Presentation] 細菌およびウイルスが保有する薬剤耐性遺伝子の存在実態〜琵琶湖流域を対象として〜2023