Tomii Kentarou 富井健太郎

… Alternative Names

TOMII Kentaro 富井健太郎

富井健太郎トミイケンタロウ

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Researcher Number	40357570
Other IDs	https://orcid.org/0000-0002-4567-4768
Affiliation (Current)	2025: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 研究チーム長
Affiliation (based on the past Project Information) *help	2017 – 2023: 国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 研究チーム長 2016: 国立研究開発法人産業技術総合研究所, その他部局等, 研究員 2014: 独立行政法人産業技術総合研究所, ゲノム情報研究センター, 研究チーム長 2012 – 2013: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究チーム長 2011: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 主任研究員 … More 2011: 独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究員 2007: National Institute of Advanced Industrial Science and Technology, 生命情報工学研究センター, 研究員 2006: 独立行政法人産業技術総合研究所, 生命情報科学研究センター, 研究員 2002: 産業技術総合研究所, 生命情報科学研究センター, 研究員 Less
Review Section/Research Field	Principal Investigator Bioinformatics/Life informatics Except Principal Investigator Basic Section 38030:Applied biochemistry-related / Plant molecular biology/Plant physiology / Evolutionary biology / Bioinformatics/Life informatics / Biological Sciences
Keywords	Principal Investigator データベース / タンパク質 / 低分子化合物 / 低分子医薬品 / 機能部位 / 基質結合部位 / 配列情報解析 / 立体構造予測 / 配列プロファイル Except Principal Investigator 偽プロテアーゼ … More / 分子進化 / フェロプトーシス / 鉄硫黄タンパク質 / Fenton反応 / 二価鉄イオン / c-FLIP / 鉄結合タンパク質 / 擬プロテアーゼ / 細胞死 / シロイヌナズナ / ユビキチンリガーゼ / チロシンキナーゼ / 生化学 / コムギ無細胞タンパク質合成系 / シグナル伝達 / ジベレリン / ユビキチン化 / リン酸化 / 相同性検索 / 立体構造 / SARS-CoV-2 / FFT / ロングリードシーケンサー / 巨大アラインメント / タンパク質立体構造 / ウイルスゲノム / 塩基配列 / タンパク質 / 配列解析 / 計算プログラム / 多重配列アラインメント / タンパク質局在 / mRNA配列解析 / ミトコンドリア / mRNA局在 / 適合性関数 / プロフィール / 立体構造予測 / プロテオーム / 蛋白質 / ゲノム / 生物物理 / 生体生命情報学 Less

Structural analysis of cFLIP as an iron-binding protein and elucidation of a new physiological function
- Principal Investigator
  
  Sakamaki Kazuhiro
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38030:Applied biochemistry-related
- Research Institution
  Kyoto University
Extension of MAFFT multiple sequence alignment program mainly for large data
- Principal Investigator
  
  Katoh Kazutaka
- Project Period (FY)
  2016 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Evolutionary biology
- Research Institution
  Osaka University
Functional analysis of the role of plant tyrosine protien kinase for gibberellin signalling.
- Principal Investigator
  
  Nemoto Keiichiro
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Iwate Biotechnology Research Center
  Ehime University
Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA
- Principal Investigator
  
  HORTON Paul
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Development of ultra-fast comparison method of protein local structures towards the prediction of ligand-binding sitesPrincipal Investigator
- Principal Investigator
  
  TOMII KENTARO
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
配列情報解析と局所構造パターン分類を融合した新たなタンパク質立体構造予測法の開発Principal Investigator
- Principal Investigator
  
  富井健太郎
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  National Institute of Advanced Industrial Science and Technology
タンパク質の立体構造プロフィールと極値分布を用いた構造認識法の開発
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology

All 2022 2018 2017 2016 2015 2013 2012 2011 2008 2007 2006

All Journal Article Presentation

[Journal Article] Parallelization of MAFFT for large-scale multiple sequence alignments2018
- Author(s)
  Nakamura Tsukasa、Yamada Kazunori D、Tomii Kentaro、Katoh Kazutaka
- Journal Title
  
  Bioinformatics
  
  Volume: 印刷中 Issue: 14 Pages: 2490-2492
- DOI
  10.1093/bioinformatics/bty121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07464, KAKENHI-PROJECT-17J06457
[Journal Article] Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation2017
- Author(s)
  Nemoto K., Ramadan A., Arimura G., Imai K., Tomii K., Shinozaki K., Sawasaki T.
- Journal Title
  
  Nature Communications
  
  Volume: 8 Issue: 1 Pages: 1004-1004
- DOI
  10.1038/s41467-017-01005-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07407, KAKENHI-PUBLICLY-16H01471, KAKENHI-PLANNED-16H06579, KAKENHI-PROJECT-16H04729, KAKENHI-PROJECT-16K18570
[Journal Article] Application of the MAFFT sequence alignment program to large data―reexamination of the usefulness of chained guide trees2016
- Author(s)
  Yamada KD, Tomii K, Katoh K
- Journal Title
  
  Bioinformatics
  
  Volume: 32 Issue: 21 Pages: 3246-3251
- DOI
  10.1093/bioinformatics/btw412
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-16K07464
[Journal Article] PoSSuM: ポケット類似性情報に基づく合理的薬剤設計支援に向けて2015
- Author(s)
  池田和由、富井健太郎
- Journal Title
  
  SAR News
  
  Volume: No.28 Pages: 14-20
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23500374
[Journal Article] PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs2015
- Author(s)
  J. Ito, K. Ikeda, K. Yamada, K. Mizuguchi, K. Tomii
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 43 Issue: D1 Pages: D392-D398
- DOI
  10.1093/nar/gku1144
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23500374
[Journal Article] PDB-scale Analysis of Known and Putative Ligand-binding Sites with Structural Sketches2012
- Author(s)
  J. Ito, Y. Tabei, K. Shimizu, K. Tomii and K. Tsuda
- Journal Title
  
  Proteins
  
  Volume: 80 Issue: 3 Pages: 747-763
- DOI
  10.1002/prot.23232
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21680025, KAKENHI-PROJECT-23500374
[Journal Article] PoSSuM: a Database of Similar Protein-Ligand Binding and Putative Pockets2012
- Author(s)
  J. Ito, Y. Tabei, K. Shimizu, K. Tsuda and K. Tomii
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 40 Issue: D1 Pages: D541-D548
- DOI
  10.1093/nar/gkr1130
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21680025, KAKENHI-PROJECT-23500374
[Journal Article] Statistical Features of the Residue Environment in Proteins2007
- Author(s)
  Kentrao Tomii
- Journal Title
  
  RECOMB2007 Poster Abstracts
- Data Source
  KAKENHI-PROJECT-18700297
[Journal Article] Tertiary structure prediction of CASP7 targets using exhaustive modeling and evaluation2006
- Author(s)
  Kentaro Tomii
- Journal Title
  
  Critical Assessment of Techniques for Protein Structure Prediction (venth Meetin)
  
  Pages: 14-15
- Data Source
  KAKENHI-PROJECT-18700297
[Presentation] A functional analysis of a pseudoenzyme protein, cFLIP2022
- Author(s)
  Rhea Sarah DSouza, Yusuke Nakasone, Naoyuki Iwabe, Jin Sakamoto, Kentaro Tomii, Kazuhiro Sakamaki
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-21K05380
[Presentation] Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation2017
- Author(s)
  Nemoto, K., Ramadan, A., Arimura, GI., Imai, K., Tomii, K., Shinozaki, K., Sawasaki, T.
- Organizer
  第59回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16K18570
[Presentation] Discovery of novel ABA agonists by a wheat cell-free based high-throughput screening system2016
- Author(s)
  Nemoto, K., Kagawa, M., Hayashi, M., Tomii, K., Imai, K., Shinozaki, K., Sawasaki, T.
- Organizer
  Gordon Research Conference: Salt & Water Stress in Plants
- Place of Presentation
  Les Diablerets Conference Center (スイス)
- Year and Date
  2016-05-29
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K18570
[Presentation] PoSSuM updates and Integration with ChEMBL for application of drug reuse2013
- Author(s)
  K. Ikeda, J. Ito, K. Mizuguchi, K. Tomii
- Organizer
  Chem-Bio Informatics Society(CBI) Annual Meeting 2013
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] ChEMBLdbを利用したタンパク質の低分子医薬品結合部位の類似性比較2013
- Author(s)
  富井健太郎
- Organizer
  バイオインフォマティクスとゲノム医療
- Place of Presentation
  産業技術総合研究所臨海副都心センター(東京都)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] FORTE, PoSSuM and beyond2013
- Author(s)
  富井健太郎
- Organizer
  「タンパク質立体構造予測の最前線」ワークショップ
- Place of Presentation
  お茶の水女子大学
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] PoSSuM: a database for predicting protein-ligand Interactions2012
- Author(s)
  K. Tomii, J. Ito, Y. Tabei, K. Shimizu, K. Tsuda
- Organizer
  生命医薬情報学連合大会(2012年日本バイオインフォマティクス学会年会情報計算化学生物学会（CBI学会）年次大会オミックス医療研究会年会)
- Place of Presentation
  タワーホール船堀(東京都)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] PoSSuM: a database for searching similar pairs of known and potential ligand-binding sites in proteins2012
- Author(s)
  J. Ito, Y. Tabei, K. Shimizu, K. Tsuda, K. Tomii
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋大学
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] PoSSuM: a database of known and potential ligand-binding sites in proteins2012
- Author(s)
  J. Ito, Y. Tabei, K. Shimizu, K. Tsuda, K. Tomii
- Organizer
  Bioinformatics 2012, SocBiN
- Place of Presentation
  Stockholm, Sweden
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] 機能解析のためのタンパク質基質結合可能部位の網羅的比較解析2012
- Author(s)
  富井健太郎
- Organizer
  BiWO2012
- Place of Presentation
  産業技術総合研究所臨海副都心センター(東京都)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA2011
- Author(s)
  崎山則征, 今井賢一郎, 富井健太郎
- Organizer
  第34回日本分子生物学会 2011年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-15
- Data Source
  KAKENHI-PROJECT-23300112
[Presentation] Pdb-wide discovery of similar ligand binding sites Using structural sketches2011
- Author(s)
  J. Ito, Y. Tabei, K. Shimizu, K.Tomii, K. Tsuda
- Organizer
  3DSIG 2011: The 7th Structural Bioinformatics and Computational Biophysics
- Place of Presentation
  Austria Center Vienna (Austria)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] Structural Sketchを用いたタンパク質リガンド類似結合部位の高速列挙とそのデータベース構築2011
- Author(s)
  伊東純一、田部井靖生、清水佳奈、富井健太郎、津田宏治
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  ホテル阪急エキスポパーク (大阪府)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] A novel ultra-fast comparison method for known and potential ligand-binding sites of proteins2011
- Author(s)
  K.Tomii, J. Ito, Y. Tabei, K. Shimizu, K. Tsuda
- Organizer
  19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology
- Place of Presentation
  Austria Center Vienna (Austria)
- Data Source
  KAKENHI-PROJECT-23500374
[Presentation] Correlation between amino acid preferences and patterns of residue packing in globular proteins2008
- Author(s)
  Kentaro Tomii
- Organizer
  The 22nd Annual Symposiiun of The Protein Society
- Place of Presentation
  San Diego, U.S.A.
- Year and Date
  2008-07-20
- Data Source
  KAKENHI-PROJECT-18700297
[Presentation] 水溶性球状タンパク質中の残基環境の統計解析2007
- Author(s)
  富井健太郎
- Organizer
  第7回日本蛋白質科学会年会
- Place of Presentation
  仙台
- Year and Date
  2007-05-26
- Data Source
  KAKENHI-PROJECT-18700297

1. IMAI Kenichiro (80442573)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
2. HORTON Paul (00371071)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. MITSUYAMA Toutai (20415673)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. FRITH Martin (40462832)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. TSUDA Koji (90357517)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
6. SHIMIZU Kana (60367050)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
7. Katoh Kazutaka (70378868)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
8. Nemoto Keiichiro (60566727)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
9. SAWASAKI Tatsuya (50314969)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
10. ARIMURA Genichiro (60505329)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
11. Sakamaki Kazuhiro (20271017)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
12. 太田元規 (40290895)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 山田和範 (20756217)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
14. ITO Junichi

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results

Tomii Kentarou 富井 健太郎

TOMII Kentaro 富井 健太郎

富井 健太郎 トミイ ケンタロウ

Research Projects

Research Products

Co-Researchers

Structural analysis of cFLIP as an iron-binding protein and elucidation of a new physiological function

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Extension of MAFFT multiple sequence alignment program mainly for large data

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Functional analysis of the role of plant tyrosine protien kinase for gibberellin signalling.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Mitochondrial targeting signal is major determinant of mitochondrial localizing mRNA

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of ultra-fast comparison method of protein local structures towards the prediction of ligand-binding sitesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

配列情報解析と局所構造パターン分類を融合した新たなタンパク質立体構造予測法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

タンパク質の立体構造プロフィールと極値分布を用いた構造認識法の開発

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Parallelization of MAFFT for large-scale multiple sequence alignments2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Application of the MAFFT sequence alignment program to large data―reexamination of the usefulness of chained guide trees2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] PoSSuM: ポケット類似性情報に基づく合理的薬剤設計支援に向けて2015

Author(s)

Journal Title

Data Source

[Journal Article] PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] PDB-scale Analysis of Known and Putative Ligand-binding Sites with Structural Sketches2012

Author(s)

Journal Title

DOI

Data Source

[Journal Article] PoSSuM: a Database of Similar Protein-Ligand Binding and Putative Pockets2012

Author(s)

Journal Title

Tomii Kentarou 富井健太郎

TOMII Kentaro 富井健太郎

富井健太郎トミイケンタロウ