Oota Motonori 太田元規

… Alternative Names

Researcher Number	40290895
Other IDs
External Links
Affiliation (Current)	2020: 名古屋大学, 情報学研究科, 教授
Affiliation (based on the past Project Information) *help	2018 – 2020: 名古屋大学, 情報学研究科, 教授 2017: 名古屋大学, 大学院情報科学研究科, 教授 2016: 名古屋大学, 情報科学研究科, 助教 2013: 名古屋大学, 大学院情報科学研究科, 教授 2008 – 2013: Nagoya University, 情報科学研究科, 教授 … More
Review Section/Research Field	Principal Investigator Biological Sciences / Science and Engineering / Bioinformatics/Life informatics / Applied genomics / Basic Section 62010:Life, health and medical informatics-related Except Principal Investigator Biological Sciences / Biophysics / Science and Engineering / Living organism molecular science / Life / Health / Medical informatics / General anatomy (including histology/embryology)
Keywords	Principal Investigator 立体構造 / シミュレーション / modeller / タンパク質 / デザイン / 3D-1D法 / 生体生命情報学 / 生物物理 / ゲノム / 蛋白質 … More Except Principal Investigator 立体構造 / 分子進化 / バイオインフォマティクス / ゲノム情報解析 / タンパク質 / 選択的スプライシング / ドメイン / 局所構造 / ホモロジー検索 / データベース構築 / 立体構造予測 / 偽遺伝子 / 機能予測 / モデリング / タンパク質分類 / DNAコンピューティング / 遺伝的アルゴリズム / 統計物理 / シミュレーション / 試験管ウィルス / アミノアシル化tRNA合成酵素 / 最適化 / ナチュラルコンピューティング / 進化計算 / ウェットGA / モンテカルロ法 / 統計力学 / タンパク工学 / 適応度地形 / 進化 / 生体分子 / ワンポット反応系 / 蛋白質 / 分子設計 / フォールディング / 生理活性 / 立体権造 / 機能 / 構造・機能予測 / タンパク質ダイナミクス / タンパク質立体構造データ / 基質結合→構造変化 / データベース / 線形応答理論 / 二面角形ダイナミクス / タンパク質-タンパク質間相互作用 / タンパク質・タンパク質間相互作用 / 天然変性タンパク質 / Ｘ線小角散乱 / 高速AFM / NMR / 核内タンパク質 / X線小角散乱 / タンパク質のゆらぎ / ダイナミクス / ハブタンパク質 / タンパク質のダイナミクス / 細胞運動 / 細胞骨格 / アクチン・トレッドミリング / 筋収縮の調節 / Ｘ線結晶構造解析 / クライオ電子顕微鏡法 / アクチン / 筋肉細い線維 / ATP加水分解 / 重合・脱重合 / X線結晶構造解析 / 電子顕微鏡単粒子解析 / 蛋白質複合体構造 / 電子顕微鏡 / X線蛋白質結晶学 / アクチン重合体 / アクチン細胞骨格 / 蛋白質複合体 / 構造解析 / 蛋白質相互作用 / 蛋白質構造動態 / 低頻度変異 / タンパク質立体構造 / ホモロジーモデリング / ヒトタンパク質 / レアバリアント / 変異の意味づけ / ゲノム変異 / 蛋白質立体構構造 / 蛋白質立体構造 / ヒトゲノム / 変異 / 細胞・組織 / 軸索ガイダンス / 末梢神経 / 神経変性疾患 / 細胞分化・組織形成 Less

Structural changes of hetero-oligomers in the Protein Data BankPrincipal InvestigatorOngoing
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2018 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagoya University
Construction of analyses basis for understanding rare variants using protein structural information
- Principal Investigator
  
  Kinoshita Kengo
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Tohoku University
Functional analyses of novel genes by incorporating bioinformatics into conventional methods
- Principal Investigator
  
  MASUDA TOMOYUKI
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  General anatomy (including histology/embryology)
- Research Institution
  University of Tsukuba
Protein-protein interactions that make the actin filament functional
- Principal Investigator
  
  Maeda Yuichiro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University
Target recognition and expression mechanism of intrinsically disordered protein
- Principal Investigator
  
  SATO Mamoru
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
Development and application of a database of intrinsic protein disorderPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2009 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Identification of the relationship between protein structural changes and ligand binding on the basis of 3D protein structures
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
Protein folding simulation on the large scale computer systemPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Nagoya University
  Tokyo Institute of Technology
Studies on protein structure-function relationship by de novo design
- Principal Investigator
  
  ISOGAI Yasuhiro
- Project Period (FY)
  2006 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Living organism molecular science
- Research Institution
  Toyama Prefectural University
  The Institute of Physical and Chemical Research
タンパク-タンパク相互作用面の構造インフォマティクスPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
グリッド計算機によるタンパク質foldingのバイオインフォマティクスPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
De novo design of artificial proteins with structural specificity as if they were native protainsPrincipal Investigator
- Principal Investigator
  
  OTA Motonori
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Applied genomics
- Research Institution
  Tokyo Institute of Technology
ゲノム情報からのタンパク質構造の分類と予測
- Principal Investigator
  
  西川建
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics
タンパク質の立体構造プロフィールと極値分布を用いた構造認識法の開発Principal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Tokyo Institute of Technology
ナチュラルコンピューティングの分子実現とその設計論
- Principal Investigator
  
  山村雅幸
- Project Period (FY)
  2002 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Tokyo Institute of Technology
コンピュータを利用したタンパク質の理論的デノボ・デザインPrincipal Investigator
- Principal Investigator
  
  太田元規
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Genetics

[Book] タンパク質の立体構造入門 (藤博幸編)2010
- Author(s)
  太田元規,廣明秀一, 他
- Total Pages
  182
- Publisher
  講談社
- Data Source
  KAKENHI-PLANNED-21113007
[Book] タンパク質の立体構造入門2010
- Author(s)
  太田元規, 廣明秀一, ら
- Total Pages
  182
- Publisher
  講談社
- Data Source
  KAKENHI-PLANNED-21113007
[Book] タンパク質の分子設計「生物工学ハンドブック(日本生物工学会編)」2005
- Author(s)
  太田元規, 磯貝泰弘
- Publisher
  コロナ社
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] 生物工学ハンドブック(日本生物工学会編)1編3.2.3[3]2005
- Author(s)
  太田元規, 磯貝泰弘
- Publisher
  コロナ社
- Data Source
  KAKENHI-PROJECT-14085203
[Book] 人工タンパク質設計「タンパク質科学・構造・物性・機能(後藤祐児, 谷澤克行, 桑島邦博編)」2005
- Author(s)
  磯貝泰弘, 太田元規
- Publisher
  化学同人
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] 人工タンパク質設計「タンパク質科学-構造・物性・機能」(後藤祐児, 谷澤克行, 桑島邦博編)2005
- Author(s)
  磯貝泰弘, 太田元規
- Publisher
  化学同人
- Data Source
  KAKENHI-PROJECT-15510163
[Book] タンパク質の理論構造生物学「生命情報学(五篠堀孝編)」2003
- Author(s)
  太田元規
- Publisher
  シュプリンガーフェアラーク東京
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Book] タンパク質立体構造のバイオインフォマティクス「バイオインフォマティクスがわかる(菅原秀明編)」2003
- Author(s)
  太田元規
- Publisher
  羊土社
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Using 1HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method2018
- Author(s)
  Okazaki Hiroki、Matsuo Naoki、Tenno Takeshi、Goda Natsuko、Shigemitsu Yoshiki、Ota Motonori、Hiroaki Hidekazu
- Journal Title
  
  Protein Science
  
  Volume: 27 Pages: 1821-1830
- DOI
  10.1002/pro.3485
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H03331
[Journal Article] MICAN-SQ: a sequential protein structure alignment program that is applicable to monomers and all types of oligomers2018
- Author(s)
  Shintaro Minami, Kengo Sawada, Motonori Ota, and George Chikenji
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Pages: 3324-3331
- DOI
  10.1093/bioinformatics/bty369
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07315, KAKENHI-PROJECT-18H03331, KAKENHI-PROJECT-17J02339
[Journal Article] IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels2016
- Author(s)
  Kota Kasahara and Kengo Kinoshita
- Journal Title
  
  PLoS ONE
  
  Volume: 11
- DOI
  10.1371/journal.pone.0167524
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H02773, KAKENHI-PROJECT-16K18526
[Journal Article] Ion Concentration- and Voltage-dependent Push and Pull Mechanisms of Potassium Channel Ion Conduction2016
- Author(s)
  Kasahara K and Kinoshita K
- Journal Title
  
  Plos One
  
  Volume: 15 Pages: 12-12
- DOI
  10.1186/1471-2105-15-12
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22136005, KAKENHI-PROJECT-15H02773
[Journal Article] Comprehensive analysis of motions in molecular dynamics trajectories of the actin capping protein and its inhibitor complexes.2016
- Author(s)
  Koike, R., Takeda, S., Maeda, Y., Ota, M.
- Journal Title
  
  Proteins
  
  Volume: 未定 Pages: 948-956
- DOI
  10.1002/prot.25043
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25650064, KAKENHI-PROJECT-26251017, KAKENHI-PROJECT-16K14708
[Journal Article] Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population2016
- Author(s)
  Matsuyuki Shirota and Kengo Kinoshita
- Journal Title
  
  Database
  
  Volume: 1 Pages: 1-15
- DOI
  10.1093/database/baw124
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H02773
[Journal Article] IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners2014
- Author(s)
  Fukuchi, S., Amemiya, T., Sakamoto, S., Nobe, Y., Hosoda, K., Kado, Y., Murakami, S.D., Koike, R., Hiroaki, H., and Ota, M.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 42
- DOI
  10.1093/nar/gkt1010
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007
[Journal Article] Hierarchical description and extensive classification of protein structural changes by Motion Tree.2014
- Author(s)
  Koike, R., Ota, M., and Kidera, A.
- Journal Title
  
  J. Mol. Biol.
  
  Volume: 426 Pages: 752-762
- DOI
  10.1016/j.jmb.2013.10.034
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007, KAKENHI-PROJECT-23247027
[Journal Article] An assignment of intrinsically disordered regions of proteins based on NMR structures.2013
- Author(s)
  M. Ota et al.
- Journal Title
  
  J. Struct. Biol.
  
  Volume: 181 Pages: 29-36
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] An assignment of intrinsically disordered regions of proteins based on NMR structures2013
- Author(s)
  M.Ota, H.Hiroaki, S.Fukuchi, et al.
- Journal Title
  
  J. Struct. Biol.
  
  Volume: 181巻 Pages: 29-36
- DOI
  10.1016/j.jsb.2012.10.017
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] Accidental interaction between PDZ domains and diclofenac revealed by NMR-assisted virtual screening2013
- Author(s)
  Tenno, T., Goda, N., Umetsu, Y., Ota, M., Kinoshita, K., and Hiroaki, H.
- Journal Title
  
  Molecules
  
  Volume: 18 Pages: 9567-9581
- DOI
  10.3390/molecules18089567
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-21113001, KAKENHI-PLANNED-21113007
[Journal Article] SCPC : A method to structurally compare protein complexes2012
- Author(s)
  R.Koike, M.Ota
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Pages: 324-330
- DOI
  10.1093/bioinformatics/btr654
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] IDEAL-Intrinsically Disordered proteins with Extensive Annotations and Literature2012
- Author(s)
  S.Fukuchi.H.Hiroaki, M.Ota, et al.
- Journal Title
  
  Nucleic Acid Research
  
  Volume: 40巻
- DOI
  10.1093/nar/gkr884
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007, KAKENHI-PROJECT-22570118
[Journal Article] Actin capping protein and its inhibitor CARMIL : how intrinsically disordered regions function2011
- Author(s)
  Takeda Shuichi
- Journal Title
  
  Phys. Biol.
  
  Volume: 8(3) Pages: 35005-35005
- DOI
  10.1088/1478-3975/8/3/035005
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20227008, KAKENHI-PLANNED-21113007
[Journal Article] Amino acid substitutions at protein-protein interfaces that madulate the oligomeric state2010
- Author(s)
  Nishi, H., Ota, M.
- Journal Title
  
  Proteins
  
  Volume: 78 Pages: 1563-1574
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21113007
[Journal Article] An evaluation of minimal cellular functions to sustain a bacterial cell2009
- Author(s)
  Azuma, Y., Ota, M.
- Journal Title
  
  BMC Syst.Biol. 3
  
  Pages: 111-111
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] 遺伝子医学14、次世代創薬テクノロジー2009
- Author(s)
  磯貝泰弘、太田元規
- Journal Title
  
  実践:インシリコ創薬の最前線(メディカルドゥ)
  
  Pages: 66-70
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] 人工タンパク質設計の創薬への展開2009
- Author(s)
  磯貝泰弘, 太田元規
- Journal Title
  
  遺伝子医学-次世代創薬テクノロジー、実践:インシリコ創薬の最前線- 14
  
  Pages: 66-70
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] タンパク質のフォールディング軌道を比較分類する2009
- Author(s)
  太田元規
- Journal Title
  
  分子シミュレーション研究会会誌アンサンブル 11
  
  Pages: 24-27
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories.2008
- Author(s)
  H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
- Journal Title
  
  BMC Bioinformatics 9
  
  Pages: 344-344
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] Experimental Rugged Fitness Landscape in Protein Sequence Space2007
- Author(s)
  Hayashi, S., Aita, T., Toyota, H., Husimi, Y., Urabe, I., Yomo, T.
- Journal Title
  
  PLoS ONE (accepted)
- NAID
  120006385827
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] λ Croフォールドのデノボデザイン2007
- Author(s)
  磯貝泰弘, 太田元規
- Journal Title
  
  生物物理 271
  
  Pages: 185-189
- NAID
  110006273087
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] Enhanced partial order curve comparison over multiple protein folding trajectories.2007
- Author(s)
  H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
- Journal Title
  
  Comput. Syst. Bioinformatics. Conf. 6
  
  Pages: 299-310
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] Unfolding pathways of goatα-lactalbumin as revealed in multiple alignment of molecular dynamics trajectories.2007
- Author(s)
  T. Oroguchi, M. Ikeguchi, M. Ota, K. Kuwajima, A. Kidera
- Journal Title
  
  Mol. Biol. 371
  
  Pages: 1354-64
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] 最小細胞機能セットの探求2007
- Author(s)
  東裕介, 太田元規
- Journal Title
  
  化学と工業 60
  
  Pages: 590-592
- NAID
  10019487696
- Data Source
  KAKENHI-PROJECT-19300101
[Journal Article] λCroフォールドのデノボデザイン2007
- Author(s)
  磯貝泰弘、太田元規
- Journal Title
  
  生物物理第47巻、第3号
  
  Pages: 185-189
- NAID
  110006273087
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310149
[Journal Article] Extracting characteristic properties of fitness landscape from in vitro evolution : A case study on infectivity of fd phage to E. coli2007
- Author(s)
  Aita, T., Hayashi, S., Toyota, H., Husimi, Y., Urabe, I, Yomo, T.
- Journal Title
  
  J. Theor. Biol. (accepted)
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] A Hyperthermophilic Protein Acquires Function at the Cost of Stability2006
- Author(s)
  Mukaiyama, A., Haruki, M., Ota, M., Koga, Y., Takano, K., Kanay, a S.
- Journal Title
  
  Biochemistry 45
  
  Pages: 12673-12679
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] タンパク質フォールディングのバイオインフォマティクス2006
- Author(s)
  太田元規
- Journal Title
  
  パリティ 21
  
  Pages: 63-65
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] Stabilization of E. coli Ribonuclease HI by the ‘stability profile of mutant protein' (SPMP)-inspired random and non-random mutagenesis.2006
- Author(s)
  Haruki, M., Saito, Y., Ota, M., Nishikawa, K., Kanaya, S.
- Journal Title
  
  J.Biotechnol (掲載決定)
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] P-cats : Prediction of catalytic residues in proteins from the tertiary structures2005
- Author(s)
  Kinoshita, Ota
- Journal Title
  
  Bioinformatics 17
  
  Pages: 3570-3571
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] タンパク質のフォールディングシミュレーション2005
- Author(s)
  太田元規
- Journal Title
  
  シミュレーション 24
  
  Pages: 29-34
- Data Source
  KAKENHI-PROJECT-14085203
[Journal Article] タンパク質の安定性と機能部位2004
- Author(s)
  太田元規
- Journal Title
  
  生物物理 255
  
  Pages: 230-231
- NAID
  110001820217
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  Ota, Ikeguchi, Kidera
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure.2004
- Author(s)
  M.Ota et al.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Journal Article] Phylogeny of protein-folding trajectories reveals a unique pathway to native structure2004
- Author(s)
  Ota, Ikeguchi, Kidera
- Journal Title
  
  Proc.Natl.Acad.Sci.USA. 101
  
  Pages: 17658-17663
- Data Source
  KAKENHI-PROJECT-16014208
[Journal Article] タンパク質の安定性と機能部位2004
- Author(s)
  太田元規
- Journal Title
  
  生物物理 255
  
  Pages: 230-231
- NAID
  110001820217
- Data Source
  KAKENHI-PROJECT-16014208
[Journal Article] Phylogeny of protein-folding trajectories a unique pathway to native structure2004
- Author(s)
  M.Ota et al.
- Journal Title
  
  Proc. Natl. Acad. Sci. USA. 101
  
  Pages: 17658-17663
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15510163
[Patent] タンパク質凍結保存用保護剤2014
- Inventor(s)
  廣明秀一,太田元規,福地佐斗志, 他
- Industrial Property Rights Holder
  廣明秀一,太田元規,福地佐斗志, 他
- Industrial Property Rights Type
  特許
- Filing Date
  2014-02-24
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Description of structural changes by Motion Tree2019
- Author(s)
  Ryotaro Koike, Kei Moritsugu, Motonori Ota
- Organizer
  63rd Annual Meeting of the Biophysical Society
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] A database of intrinsically disordered protein: IDEAL (and its application to Protean segments)2018
- Author(s)
  Motonori Ota
- Organizer
  17th European Conference on Computational Biology Pre-meeting "Intrinsically disordered proteins: advances and state-of-the-art of the field"
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] リン酸化部位を含む天然変性領域2018
- Author(s)
  小池亮太郎，天野睦紀，貝淵弘三，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] リン酸化によって誘起されるイベントのRDF記述フォーマット2018
- Author(s)
  嘉戸裕美子，細田和男，坂本盛宇，小池亮太郎，福地佐斗志，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 類縁タンパク質立体構造中の二次構造スワップの解析2018
- Author(s)
  柴田哲郎，南慎太朗，小池亮太郎，太田元規
- Organizer
  第18回日本蛋白質科学会
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] Property of intrinsically disordered "hub" proteins2018
- Author(s)
  Motonori Ota
- Organizer
  4th Symposium on non-globular proteins
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] 天然変性タンパク質データベース：IDEAL2018
- Author(s)
  太田元規，嘉戸裕美子，坂本盛宇，細田和男，小池亮太郎，廣明秀一，福地佐斗志
- Organizer
  トーゴーの日シンポジウム2018
- Data Source
  KAKENHI-PROJECT-18H03331
[Presentation] How the binding of CP (capping protein) to the B-end of actin filaments is regulated2014
- Author(s)
  Takeda S., Koike R., Ota M., Maeda Y.
- Organizer
  43rd European Muscle Conference
- Place of Presentation
  オーストリア
- Year and Date
  2014-09-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26251017
[Presentation] Regulation of capping protein (CP=CapZ) association with the B-end of actin filament2014
- Author(s)
  Takeda S., Koike R., Ota M., Maeda Y
- Organizer
  Gordon Research Conference "Muscle and Molecular Motors"
- Place of Presentation
  USA
- Year and Date
  2014-07-06
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26251017
[Presentation] タンパク質立体構造データ解析私論2013
- Author(s)
  太田元規
- Organizer
  生物物理若手の会，第５３回夏の学校
- Place of Presentation
  伊豆長岡
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質データベースIDEAL の機能拡張 ―PPI ネットワーク2013
- Author(s)
  T.Amemiya, H.Hiroaki, M.Ota & S.Fukuchi, et al.
- Organizer
  第51回日本生物物理学会
- Place of Presentation
  京都
- Year and Date
  2013-10-28
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Structural study on REV7, the adaptor protein coordinating REV1 and REV3 polymerase in ttanslesion DNA synthesis2013
- Author(s)
  Sotaro Kikuchi, Kodai Hara, Toshiyuki Shimizu, Mamoru Sato, Hiroshi Hashimoto
- Organizer
  International Conference on Structural Genomics-Structural Life Science-(ICSG2013-SLS)
- Place of Presentation
  Keio Plaza Hotel Sapporo in Sapporo
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Collection and annotation of intrinsically disordered protein2013
- Author(s)
  M. Ota
- Organizer
  The 2nd ISIDP Symposium
- Place of Presentation
  理研鶴見研究所
- Year and Date
  2013-01-20
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Structural analysis of protean segments (ProSs) in intrinsically disordered proteins (IDPs)2013
- Author(s)
  D.Shaji, T.Amemiya, S.Fukuchi & M.Ota
- Organizer
  第13回日本蛋白質科学会
- Place of Presentation
  鳥取
- Year and Date
  2013-06-12
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Hierarchical description of protein structural change by Motion Tree2013
- Author(s)
  M. Ota
- Organizer
  Satellite Meeting of ICMS2013 in Nagoya
- Place of Presentation
  名古屋
- Invited
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Motion Tree を利用した capping protein の動的構造解析2013
- Author(s)
  M. Ota et al.
- Organizer
  第５１回日本生物物理学会
- Place of Presentation
  京都
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Rho family の可動領域におけるタンパク質間相互作用の解析2013
- Author(s)
  伴知晃，太田元規
- Organizer
  第３６回日本分子生物学会
- Place of Presentation
  神戸
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] MotionTree 法によるホモダイマータンパク質の構造変化の解析2013
- Author(s)
  堀井達哉，太田元規
- Organizer
  第１３回日本蛋白質科学会
- Place of Presentation
  鳥取
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Actin capping protein and its inhibitor CARMIL: how intrinsically disordered regions function2012
- Author(s)
  M. Ota et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] What happens on the histone multimers in the gas phase?2012
- Author(s)
  Kazumi Saikusa, Sotaro Fuchigami, Kyohei Takahashi, Yuuki Asano, Aritaka Nagadoi, Hiroaki Tachiwana, Hitoshi Kurumizaka, Mitsunori Ikeguchi, Yoshifumi Nishimura, Satoko Akashi
- Organizer
  19th International Conference on Mass Spectrometry
- Place of Presentation
  Kyoto International Conference Center, Kyoto
- Year and Date
  2012-09-16
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] The IDEAL database, Intrinsically disordered proteins with extensive annotations and literature2012
- Author(s)
  S.Fukuchi, H.Hiroaki, M.Ota, et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Actin capping protein and its inhibitor CARMIL : how intrinsically disordered regions function2012
- Author(s)
  M.Ota, et al.
- Organizer
  The Gordon Research Conference of Intrinsically Disordered Proteins
- Place of Presentation
  Mount Snow Resort (USA)
- Year and Date
  2012-07-10
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] How intrinsically disordered regions function : Lessons from CARMIL peptide cases2011
- Author(s)
  Ota, M.
- Organizer
  立命館大学国際シンポジウム
- Place of Presentation
  草津
- Year and Date
  2011-01-30
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Database for the research of intrinsically disordered proteins2011
- Author(s)
  Ota, M.
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Assignment of intrinsically disordered regions based on NMR structural data2011
- Author(s)
  Ota, M.
- Organizer
  ISDIP
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 蛋白質複合体のための構造比較法SCPCの開発2011
- Author(s)
  小池亮太郎、太田元規
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  兵庫県立大
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 進化的起源を同じくする酵素群における機能とドメイン構成の多様性について2011
- Author(s)
  丹谷恵子、太田元規
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  ホテル阪急エキスポパーク
- Year and Date
  2011-06-07
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 蛋白質複合体のための構造比較法の開発2011
- Author(s)
  小池亮太郎、太田元規
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  ホテル阪急エキスポパーク
- Year and Date
  2011-06-08
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Database for the research of intrinsically disordered proteins2011
- Author(s)
  太田元規
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(招待講演)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] ミニマム細胞の設計原理:比較ゲノムからのアプローチ2011
- Author(s)
  太田元規
- Organizer
  第49回日本生物物理学会年会
- Place of Presentation
  兵庫県立大(招待講演)
- Year and Date
  2011-09-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質の相互作用部位データベースの開発と解析2010
- Author(s)
  黒木隆博, 太田元規
- Organizer
  第48回生物物理学会
- Place of Presentation
  東北大学
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] NMRモデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回日本蛋白質科学会年会ワークショップ「天然変性タンパク質研究が目指すサイエンス」
- Place of Presentation
  札幌コンベンションセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] 天然変性タンパク質:バイオインフォマティクスによるアプローチ2010
- Author(s)
  太田元規
- Organizer
  岡崎統合バイオサイエンスセンターサマースクール
- Place of Presentation
  岡崎
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] NMR モデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回日本蛋白質科学会年会
- Place of Presentation
  札幌コンベンションセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] RESAT-vector を用いた天然変性タンハク質配列の網羅的検証系の確立2010
- Author(s)
  合田(天野)名都子,太田元規,廣明秀一, 他
- Organizer
  第10回蛋白質科学会
- Place of Presentation
  札幌
- Year and Date
  2010-06-16
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] NMRモデルを利用した天然変性領域のアサインメント2010
- Author(s)
  太田元規
- Organizer
  第10回蛋白質科学会
- Place of Presentation
  札幌
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質:バイオインフォマティクスによるアプローチ2010
- Author(s)
  太田元規
- Organizer
  岡崎統合バイオサイエンスセンター・サマースクール
- Place of Presentation
  岡崎統合バイオサイエンスセンター
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Intrinsically disordered regions in NMR models2010
- Author(s)
  Ota, M.
- Organizer
  Gordon conference
- Place of Presentation
  Davidson, NC, USA
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 天然変性タンパク質のデータベース構築と解析2010
- Author(s)
  太田元規
- Organizer
  文科省「新学術領域研究(天然変性蛋白質)」第1回公開シンポジウム
- Place of Presentation
  理化学研究所横浜研究所
- Year and Date
  2010-01-19
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] Enzymatic function and conformational change2010
- Author(s)
  太田元規
- Organizer
  Fifty Years of Biophysical Research at Nagoya University
- Place of Presentation
  名古屋大学 (愛知県)
- Year and Date
  2010-03-13
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 大きなタンパク質のフォールディングシミュレーション2009
- Author(s)
  太田元規
- Organizer
  2009年度「タンパク質・ゲノム構造」勉強会
- Place of Presentation
  諏訪
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 酵素タンパク質の運動、機能、ドメイン構成2009
- Author(s)
  太田元規
- Organizer
  CBRC2009
- Place of Presentation
  生命情報工学研究センター (東京都)
- Year and Date
  2009-12-04
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 天然変性タンパク質のデータベース構築と解析2009
- Author(s)
  太田元規, 福地佐斗志
- Organizer
  第82回日本生化学会
- Place of Presentation
  神戸ポートアイランド(兵庫県)
- Year and Date
  2009-10-21
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] 大きなタンパク質のフォールディングシミュレーション2009
- Author(s)
  太田元規
- Organizer
  2009年度「タンパク質・ゲノム構造」勉強会
- Place of Presentation
  聴泉閣かめや (長野県)
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] タンパク質間相互作用面での Hotspot におけるアミル酸置換2009
- Author(s)
  西羽美, 太田元規
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本全日空ホテルニュースカイ (熊本県)
- Year and Date
  2009-05-22
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 天然変性タンパク質のデータベース構築と解析2009
- Author(s)
  太田元規、福地佐斗志
- Organizer
  第82回日本生化学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-ORGANIZER-21113001
[Presentation] 天然変性タンパク質のプロテオーム情報解析2009
- Author(s)
  福地佐斗志, 太田元規
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県)
- Year and Date
  2009-12-11
- Data Source
  KAKENHI-PLANNED-21113007
[Presentation] Motion Tree法による蛋白質構造変化の階層的記述2008
- Author(s)
  小池亮太郎, 太田元規, 木寺詔紀
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場、福岡
- Year and Date
  2008-12-04
- Data Source
  KAKENHI-PROJECT-20370063
[Presentation] ヒト・マウスをターゲットとしたデータベース : COXPRESdbとSAHG2008
- Author(s)
  木下賢吾, 太田元規
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Amino acid substitutions on protein-protein interfaces that modulate alternation of oligomeric state2008
- Author(s)
  Hafumi Nishi, Motnori Ota
- Organizer
  International symposium on frontiers of computational science 2008
- Place of Presentation
  Nagoya
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] タンパク質問相互作用面の形成-アミノ酸置換と会合状態変化2008
- Author(s)
  西羽美, 太田元規
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Evolutional insight from a set of minimal cellular functions2007
- Author(s)
  Azuma, Y. and Ota, M
- Organizer
  GIW2008
- Place of Presentation
  Singapore
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] 祖先型と最近接種ミオグロビンの自動酸化反応の温度依存性2007
- Author(s)
  石田学、村上裕太、安田温、山崎伊織、太田元規、磯貝泰弘、今井清博
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18310149
[Presentation] 組換え祖先型ミオグロビン:酸素結合特性に対するpH及び温度の効果2007
- Author(s)
  石田学、山崎伊織、村上裕太、太田元規、磯貝泰弘、今井清博
- Organizer
  日本生物物理学会第45回年会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18310149
[Presentation] Difference of oligomeric states in protein families: amino acid composition and substitutions on protein-protein interfaces2007
- Author(s)
  H. Nishi and M. Ota
- Organizer
  VII European Symposium of the Protein Society
- Place of Presentation
  Stockholm
- Data Source
  KAKENHI-PROJECT-19300101
[Presentation] Annotating protein-folding funnel by landscape profile and network2007
- Author(s)
  M. Ota, M. Ikeguchi, A. Kidera
- Organizer
  VII European Symposium of the Protein Society
- Place of Presentation
  Stockholm
- Data Source
  KAKENHI-PROJECT-19300101

1. ISOGAI Yasuhiro (00201921)

# of Collaborated Projects: 3 results

# of Collaborated Products: 8 results
2. IKEGUCHI Mitsunori (60261955)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
3. KIDERA Akinori (00186280)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. SATO Mamoru (60170784)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
5. SHIBATA Takehiko (70087550)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. AKASHI Satoko (10280728)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. ISHONO Yoshizumi (30346837)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. HIGO Jyunichi (80265719)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. NISHIMURA Yoshifumi (70107390)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
10. FUJII Yoshiaki (00098146)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. ISHIKAWA Fuyuki (30184493)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. NAKAMURA Haruki (80134485)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. MORIKAWA Kousuke (80012665)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. FUKUCHI Satoshi (70360336)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
15. HIROAKI Hidekazu (10336589)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
16. Maeda Yuichiro (10321811)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
17. Shuichi Takeda (50509081)

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18. Tomoharu Matsumoto (30392880)

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19. Mahito Kikumoto (20462880)

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20. Kayo Maeda (00321810)

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21. Ryotaro Koike (20381577)

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22. Kinoshita Kengo (60332293)

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23. SHIRAI TSUYOSHI (00262890)

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24. MASUDA TOMOYUKI (70372828)

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25. 西川建 (10093288)

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26. 小林薫(深海薫) (20225494)

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27. 輪湖博 (60158607)

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28. 梅山秀明 (20050619)

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29. 富井健太郎 (40357570)

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30. 山村雅幸 (00220442)

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31. 樺島祥介 (80260652)

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32. 木賀大介 (30376587)

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33. 伏見譲 (80011641)

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34. 春木満 (30273593)

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35. 染谷博司 (00333518)

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36. 新田克巳 (60293073)

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37. 喜多一 (20195241)

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38. 井上真郷 (70376953)

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39. 坂本健作 (50240685)

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40. 成田哲博 (30360613)

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41. 笠原浩太

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42. 木寺詔記

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43. 千見寺浄慈

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Oota Motonori 太田 元規

Motonori Ota 太田 元規

OTA Motonori 太田 元規

太田 元規 オオタ モトノリ

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Structural changes of hetero-oligomers in the Protein Data BankPrincipal InvestigatorOngoing

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Development and application of a database of intrinsic protein disorderPrincipal Investigator

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Protein folding simulation on the large scale computer systemPrincipal Investigator

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タンパク-タンパク相互作用面の構造インフォマティクスPrincipal Investigator

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グリッド計算機によるタンパク質foldingのバイオインフォマティクスPrincipal Investigator

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De novo design of artificial proteins with structural specificity as if they were native protainsPrincipal Investigator

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タンパク質の立体構造プロフィールと極値分布を用いた構造認識法の開発Principal Investigator

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Oota Motonori 太田元規

Motonori Ota 太田元規

OTA Motonori 太田元規

太田元規オオタモトノリ

[Book] 人工タンパク質設計「タンパク質科学・構造・物性・機能(後藤祐児, 谷澤克行, 桑島邦博編)」2005

[Book] 人工タンパク質設計「タンパク質科学-構造・物性・機能」(後藤祐児, 谷澤克行, 桑島邦博編)2005