Koido Masaru 小井土大

Researcher Number	40787561
Other IDs
Affiliation (Current)	2025: 東京大学, 大学院新領域創成科学研究科, 助教
Affiliation (based on the past Project Information) *help	2022 – 2023: 東京大学, 大学院新領域創成科学研究科, 助教 2020 – 2021: 東京大学, 医科学研究所, 特任助教
Review Section/Research Field	Principal Investigator Basic Section 43050:Genome biology-related Except Principal Investigator Medium-sized Section 48:Biomedical structure and function and related fields / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
Keywords	Principal Investigator 機械学習 / ゲノム解析 / エピスタシス / 遺伝子発現制御 / ディープラーニング / リバース・エンジニアリング / 遺伝子発現 / 非翻訳RNA Except Principal Investigator 核－細胞質間物質輸送 / 不妊症 … More / Importin / 配偶子形成 / クロマチン / インポーティン / 核輸送 / 卵 / 女性不妊症 / 精子細胞形成 / ゲノム医療 / 自己免疫性疾患 / 全ゲノム関連解析 / エンハンサー / 遺伝多型 / 遺伝子発現 Less

DNA配列機械学習モデルの予測根拠に基づく非翻訳RNAの発現特異性の解明Principal Investigator
- Principal Investigator
  
  小井土大
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  The University of Tokyo
Exploring a novel function of nuclear transport molecules in male and female gametogenesis and elucidation of the infertility mechanism
- Principal Investigator
  
  宮本洋一
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))
- Review Section
  
  Medium-sized Section 48:Biomedical structure and function and related fields
- Research Institution
  National Institutes of Biomedical Innovation, Health and Nutrition
Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases
- Principal Investigator
  
  Terao Chikashi
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Institute of Physical and Chemical Research
Deep learning on genome sequence to identify epistatic effects in complex diseasesPrincipal Investigator
- Principal Investigator
  
  Koido Masaru
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  The University of Tokyo

All 2024 2023 2022 2021 2020

All Journal Article Presentation

[Journal Article] Decoding triancestral origins, archaic introgression, and natural selection in the Japanese population by whole-genome sequencing.2024
- Author(s)
  1.Xiaoxi Liu, Satoshi Koyama, Kohei Tomizuka, Sadaaki Takata Yuki Ishikawa, Shuji Ito, Shunichi Kosugi, Kunihiko Suzuki, Keiko Hikino, Masaru Koido, Yoshinao Koike, Momoko Horikoshi, Takashi Gakuhari, Shiro Ikegawa, Kochi Matsuda, Yukihide Momozawa, Kaoru Ito, Yoichiro Kamatani, and Chikashi Terao
- Journal Title
  
  Science Advances
  
  Volume: 10 Issue: 16
- DOI
  10.1126/sciadv.adi8419
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06130, KAKENHI-PROJECT-20H00462
[Journal Article] MENTR：DNA配列から非翻訳RNAの発現を予測する機械学習法2023
- Author(s)
  小井土大 , 寺尾知可史
- Volume
  41
- Pages
  971
- DOI
  10.18958/7223-00005-0000413-00
- Language
  Japanese
- Data Source
  KAKENHI-PROJECT-20K15773
[Journal Article] A novel CCDC91 isoform associated with ossification of the posterior longitudinal ligament of the spine works as a non-coding RNA to regulate osteogenic genes2023
- Author(s)
  Nakajima Masahiro、Koido Masaru、Guo Long、Terao Chikashi、Ikegawa Shiro
- Journal Title
  
  The American Journal of Human Genetics
  
  Volume: 110 Issue: 4 Pages: 638-647
- DOI
  10.1016/j.ajhg.2023.03.004
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H03811, KAKENHI-PROJECT-20K15773, KAKENHI-PROJECT-20H00462, KAKENHI-PROJECT-23K24466
[Journal Article] Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning2022
- Author(s)
  Koido Masaru、Hon Chung-Chau、Koyama Satoshi、Kawaji Hideya、Murakawa Yasuhiro、Ishigaki Kazuyoshi、Ito Kaoru、Sese Jun、Parrish Nicholas F.、Kamatani Yoichiro、Carninci Piero、Terao Chikashi
- Journal Title
  
  Nature Biomedical Engineering
  
  Volume: Online Issue: 6 Pages: 830-844
- DOI
  10.1038/s41551-022-00961-8
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KF0209, KAKENHI-PROJECT-20K15773, KAKENHI-PROJECT-21K20647, KAKENHI-PROJECT-20H00462, KAKENHI-PROJECT-23K24373
[Journal Article] Stroke genetics informs drug discovery and risk prediction across ancestries2022
- Author(s)
  Debette Stephanie、Mishra Aniket、Malik Rainer、Hachiya Tsuyoshi、Jurgenson Tuuli、Namba Shinichi、Koido Masaru、et al.
- Journal Title
  
  Research Square
  
  Volume: -
- DOI
  10.21203/rs.3.rs-1175817/v1
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15773
[Journal Article] Stroke genetics informs drug discovery and risk prediction across ancestries2022
- Author(s)
  Mishra Aniket、Malik Rainer、Hachiya Tsuyoshi、Jurgenson Tuuli、Namba Shinichi、Posner Daniel C.、Kamanu Frederick K.、Koido Masaru、et al.
- Journal Title
  
  Nature
  
  Volume: 611 Issue: 7934 Pages: 115-123
- DOI
  10.1038/s41586-022-05165-3
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15773, KAKENHI-PROJECT-23K21506
[Journal Article] Susceptibility loci and polygenic architecture highlight population specific and common genetic features in inguinal hernias2021
- Author(s)
  Hikino Keiko、Koido Masaru、Tomizuka Kohei、Liu Xiaoxi、Momozawa Yukihide、Morisaki Takayuki、Murakami Yoshinori、The Biobank Japan Project、Mushiroda Taisei、Terao Chikashi
- Journal Title
  
  EBioMedicine
  
  Volume: 70 Pages: 103532-103532
- DOI
  10.1016/j.ebiom.2021.103532
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K15773
[Journal Article] Eight novel susceptibility loci and putative causal variants in atopic dermatitis2021
- Author(s)
  Tanaka Nao、Koido Masaru、Suzuki Akari、Otomo Nao、Suetsugu Hiroyuki、Kochi Yuta、Tomizuka Kouhei、Momozawa Yukihide、Kamatani Yoichiro、Ikegawa Shiro、Yamamoto Kazuhiko、Terao Chikashi
- Journal Title
  
  Journal of Allergy and Clinical Immunology
  
  Volume: 148 Issue: 5 Pages: 1293-1306
- DOI
  10.1016/j.jaci.2021.04.019
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20K15773
[Journal Article] Predicting cell-type-specific non-coding RNA transcription from genome sequence2020
- Author(s)
  Koido Masaru、Hon Chung-Chau、Koyama Satoshi、Kawaji Hideya、Murakawa Yasuhiro、Ishigaki Kazuyoshi、Ito Kaoru、Sese Jun、Kamatani Yoichiro、Carninci Piero、Terao Chikashi
- Journal Title
  
  bioRxiv
  
  Volume: 2020.03.29.011205
- DOI
  10.1101/2020.03.29.011205
- Open Access
- Data Source
  KAKENHI-PROJECT-20K15773
[Presentation] 遺伝的リスクを生物学的に解釈するゲノム・オミックス・ヒト細胞モデルの統合解析2022
- Author(s)
  小井土大
- Organizer
  第49回日本毒性学会学術年会
- Invited
- Data Source
  KAKENHI-PROJECT-20K15773
[Presentation] 元WET研究者によるオミクス統合解析手法の開発2022
- Author(s)
  小井土大
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20K15773
[Presentation] Learn genomics from AI for interpreting the roles of non-coding RNAs in complex traits2020
- Author(s)
  Masaru Koido
- Organizer
  2nd ASHBi Mathematical Biology Workshop
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15773
[Presentation] Challenges and opportunities in utilizing machine learning for genomics research2020
- Author(s)
  Masaru Koido
- Organizer
  The 7th RIKEN-Karolinska Institutet/SciLifeLab Joint Symposium: Biomedical Data for Artificial Intelligence - The role of AI in the future direction of Life Science research -
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K15773

1. Terao Chikashi (60610459)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 鎌谷洋一郎 (00720880)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 川路英哉 (20525406)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 村川泰裕 (50765469)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
5. 宮本洋一 (10379084)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 岡田由紀 (60546430)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 原聡史 (80739582)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. KOSUGI Shunichi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. NAKAJIMA Masahiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Koido Masaru 小井土 大

Research Projects

Research Products

Co-Researchers

DNA配列機械学習モデルの予測根拠に基づく非翻訳RNAの発現特異性の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Exploring a novel function of nuclear transport molecules in male and female gametogenesis and elucidation of the infertility mechanism

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation for genetic regulation of enhancer expression and interpretation of genetic architecture in autoimmune diseases

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Deep learning on genome sequence to identify epistatic effects in complex diseasesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Decoding triancestral origins, archaic introgression, and natural selection in the Japanese population by whole-genome sequencing.2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] MENTR：DNA配列から非翻訳RNAの発現を予測する機械学習法2023

Author(s)

Volume

Pages

DOI

Language

Data Source

[Journal Article] A novel CCDC91 isoform associated with ossification of the posterior longitudinal ligament of the spine works as a non-coding RNA to regulate osteogenic genes2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learning2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Stroke genetics informs drug discovery and risk prediction across ancestries2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Stroke genetics informs drug discovery and risk prediction across ancestries2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Susceptibility loci and polygenic architecture highlight population specific and common genetic features in inguinal hernias2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Eight novel susceptibility loci and putative causal variants in atopic dermatitis2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Predicting cell-type-specific non-coding RNA transcription from genome sequence2020

Author(s)

Journal Title

DOI

Data Source

[Presentation] 遺伝的リスクを生物学的に解釈するゲノム・オミックス・ヒト細胞モデルの統合解析2022

Author(s)

Organizer

Data Source

[Presentation] 元WET研究者によるオミクス統合解析手法の開発2022

Koido Masaru 小井土大