Ishiya Koji 石谷孔司

Researcher Number	40826062
Other IDs
Affiliation (Current)	2025: 金沢大学, サピエンス進化医学研究センター, 助教
Affiliation (based on the past Project Information) *help	2023 – 2024: 国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 2020 – 2023: 国立研究開発法人産業技術総合研究所, 生命工学領域, 研究員 2019: 国立研究開発法人産業技術総合研究所, 生命工学領域, 産総研特別研究員
Review Section/Research Field	Principal Investigator Basic Section 45060:Applied anthropology-related / Transformative Research Areas, Section (I) Except Principal Investigator Broad Section A / Medium-sized Section 3:History, archaeology, museology, and related fields / Basic Section 03060:Cultural assets study-related / Transformative Research Areas, Section (I)
Keywords	Principal Investigator メタゲノム / バイオインフォマティクス / AI / 深層学習 / 機械学習 / 古代DNA / パレオゲノミクス / Bioinformatics / NGS / DNA profiling … More / DNA typing / Y染色体 / ミトコンドリアゲノム / SNP / MLST / CNV / 多型 / ゲノム / ゲノミクス / 多型解析 / 性別判定 / 次世代シーケンサー / DNA多型 … More Except Principal Investigator 古代ゲノム / 古人骨 / 遺跡出土骨 / パレオゲノミクス / 葬制 / 社会組織 / 骨考古学 / 縄文人骨 / 半定住狩猟採集民 / 生物標本 / 博物館 / シングルセル解析 / 植物標本 / 絶滅動物 / シングルセル / 寄生虫卵 / 植物病理標本 / 絶滅哺乳類 / 微量サンプリング / 栽培史 / DNAバーコーディング / AmpliconSeq / バイオインフォマティクス / Amplicon seq / 雑穀 / イネ / DNAメタバーコーディング / 古代DNA / 食性 / 歯石 / 新石器時代後期 / 日本 / 中国 / 東アジア / 新石器時代 / 中国考古学 Less

Paleometagenomics methods for reconstructing bioarchaeological recordsPrincipal Investigator
- Principal Investigator
  
  石谷孔司
- Project Period (FY)
  2024 – 2025
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (I)
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Computational approaches for estimating sample attributes from metagenomic dataPrincipal Investigator
- Principal Investigator
  
  石谷孔司
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 45060:Applied anthropology-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Ancient genomics study on histories of crop species utilization in Jananese Archiperago
- Principal Investigator
  
  Kumagai Masahiko
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 03060:Cultural assets study-related
- Research Institution
  National Agriculture and Food Research Organization
"Shin" Paleogenomics Creates New Perspectives on the Utilization of Museum Materials
- Principal Investigator
  
  Gakuhari Takashi
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 3:History, archaeology, museology, and related fields
- Research Institution
  Kanazawa University
Social Organization and Funerary Systems of Semi-Sedentary Hunter-Gatherers: reconstruction of prehistoric societies through advanced bio-archaeology
- Principal Investigator
  
  谷口康浩
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section A
- Research Institution
  Kokugakuin University
パレオゲノミクス解析プラットフォーム開発とその応用
- Principal Investigator
  
  Gakuhari Takashi
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (I)
- Research Institution
  Kanazawa University
Development of a rapid DNA typing systemPrincipal Investigator
- Principal Investigator
  
  Ishiya Koji
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 45060:Applied anthropology-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Recognition of differential culture conditions with dimensional reduction approach2024
- Author(s)
  Ishiya Koji、Taniguchi Takeaki
- Journal Title
  
  Journal of Physics: Conference Series
  
  Volume: 2701 Issue: 1 Pages: 012139-012139
- DOI
  10.1088/1742-6596/2701/1/012139
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K14279
[Journal Article] バイオインフォマティクスによるバイオものづくり ―情報科学が加速するバイオものづくりの新展開2024
- Author(s)
  石谷孔司
- Journal Title
  
  化学と工業
  
  Volume: 77 Pages: 281-283
- Data Source
  KAKENHI-PROJECT-23K14279
[Journal Article] Bioarchaeological study of ancient Teotihuacans based on complete mitochondrial genome sequences and diet isotopes2023
- Author(s)
  Mizuno Fuzuki、Tokanai Fuyuki、Kumagai Masahiko、Ishiya Koji、Sugiyama Saburo、Hayashi Michiko、Kurosaki Kunihiko、Ueda Shintaroh
- Journal Title
  
  Annals of Human Biology
  
  Volume: 50 Issue: 1 Pages: 390-398
- DOI
  10.1080/03014460.2023.2261844
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K00996, KAKENHI-PROJECT-20H01376
[Journal Article] 微生物生態系の理解に向けて2022
- Author(s)
  石谷孔司、油谷幸代
- Journal Title
  
  KAGAKU TO SEIBUTSU
  
  Volume: 60 Issue: 2 Pages: 52-54
- DOI
  10.1271/kagakutoseibutsu.60.52
- ISSN
  0453-073X, 1883-6852
- Year and Date
  2022-02-01
- Language
  Japanese
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K16246
[Journal Article] Comparative Genome Analysis Reveals Accumulation of Single-Nucleotide Repeats in Pathogenic Escherichia Lineages2022
- Author(s)
  Ishiya Koji、Nakashima Nobutaka
- Journal Title
  
  Current Issues in Molecular Biology
  
  Volume: 44 Issue: 2 Pages: 498-504
- DOI
  10.3390/cimb44020034
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16246
[Journal Article] Multivariate statistical monitoring system for microbial population dynamics2021
- Author(s)
  Ishiya Koji、Aburatani Sachiyo
- Journal Title
  
  Physical Biology
  
  Volume: 19 Issue: 1 Pages: 016003-016003
- DOI
  10.1088/1478-3975/ac3ad6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16246, KAKENHI-PLANNED-21H05230
[Journal Article] A biomolecular anthropological investigation of William Adams, the first SAMURAI from England2020
- Author(s)
  Mizuno Fuzuki、Ishiya Koji、Matsushita Masami、Matsushita Takayuki、Hampson Katherine、Hayashi Michiko、Tokanai Fuyuki、Kurosaki Kunihiko、Ueda Shintaroh
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 21651-21651
- DOI
  10.1038/s41598-020-78723-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246, KAKENHI-PLANNED-19H05737
[Journal Article] Evolutionary History of the Risk of SNPs for Diffuse-Type Gastric Cancer in the Japanese Population2020
- Author(s)
  Iwasaki Risa L.、Ishiya Koji、Kanzawa-Kiriyama Hideaki、Kawai Yosuke、Gojobori Jun、Satta Yoko
- Journal Title
  
  Genes
  
  Volume: 11 Issue: 7 Pages: 775-775
- DOI
  10.3390/genes11070775
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246, KAKENHI-PLANNED-18H05511
[Journal Article] MitoIMP: A Computational Framework for Imputation of Missing Data in Low-Coverage Human Mitochondrial Genome2019
- Author(s)
  Koji Ishiya、Fuzuki Mizuno、Li Wang、Shintaroh Ueda
- Journal Title
  
  Bioinformatics and Biology Insights
  
  Volume: 13 Pages: 1-9
- DOI
  10.1177/1177932219873884
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246, KAKENHI-PROJECT-17H00939, KAKENHI-PROJECT-17H03738, KAKENHI-PROJECT-17K07588, KAKENHI-PROJECT-16H05775, KAKENHI-PLANNED-19H05737
[Journal Article] Novel approach for accurate detection of contaminating human mitochondrial DNA in next-generation sequencing data2019
- Author(s)
  Koji Ishiya、Shintaroh Ueda
- Journal Title
  
  Journal of Physics: Conference Series
  
  Volume: 1391 Issue: 1 Pages: 012045-012045
- DOI
  10.1088/1742-6596/1391/1/012045
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] パレゲノミクス2.0～異分野連携に向けたパレオゲノミクスデータの活用～2023
- Author(s)
  石谷孔司
- Organizer
  金沢大学サピエンス進化医学研究センターキックオフシンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-21H04358
[Presentation] パレゲノミクス2.0～異分野連携に向けたパレオゲノミクスデータの活用～2023
- Author(s)
  石谷孔司
- Organizer
  金沢大学サピエンス進化医学研究センターキックオフシンポジウム
- Invited
- Data Source
  KAKENHI-PLANNED-20H05822
[Presentation] 古代メキシコ、テオティワカン遺跡出土古人骨をもちいた科学分析2023
- Author(s)
  水野文月、門叶冬樹、熊谷真彦、石谷孔司、林美千子、杉山三郎、植田信太郎、黒崎久仁彦
- Organizer
  日本DNA多型学会第32回学術
- Data Source
  KAKENHI-PROJECT-21K00996
[Presentation] 配列特徴量に基づく迅速な性別判定法の開発2022
- Author(s)
  石谷孔司
- Organizer
  日本DNA多型学会
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] 群馬県居家以岩陰遺跡から出土した縄文早期人骨の親族関係2022
- Author(s)
  水野文月・谷口康浩・近藤修・石谷孔司・林美千子・山田孝・植田信太郎・黒崎久仁彦
- Organizer
  日本DNA多型学会第30回学術集会
- Data Source
  KAKENHI-PROJECT-21H04983
[Presentation] 群馬県居家以岩陰遺跡から出土した縄文早期人骨の親族関係2022
- Author(s)
  水野文月、谷口康浩、近藤修、石谷孔司、林美千子、山田孝、植田信太郎・黒崎久仁彦
- Organizer
  日本DNA多型学会第30回学術集会
- Data Source
  KAKENHI-PROJECT-21H04983
[Presentation] Time-series Change Detection Approach for Microbial Population Dynamics2021
- Author(s)
  Koji Ishiya
- Organizer
  11th International Conference on Bioscience, Biochemistry and Bioinformatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] Detection of age-related methylation sites for different cell resources2020
- Author(s)
  Koji Ishiya
- Organizer
  EurasianBioChem2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] Detection of phylogenetically-informative SNPs in human Y-chromosome from next-generation sequencing data2019
- Author(s)
  Koji Ishiya
- Organizer
  The 2019 Congress of the European Society for Evolutionary Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] 居家以岩陰遺跡（縄文早期）及び土井ヶ浜遺跡（弥生中期）出土人骨のエピゲノム解析の試み2019
- Author(s)
  熊谷真彦、水野文月、石谷孔司、五條堀淳、林美千子、松下真実、松下孝幸、谷口康浩、近藤修、黒崎久仁彦、王瀝、植田信太郎
- Organizer
  第73回日本人類学会大会
- Data Source
  KAKENHI-PROJECT-19K16246
[Presentation] 居家以岩陰遺跡（縄文早期）及び土井ヶ浜遺跡（弥生中期）出土人骨の核ゲノム解析（予報）2019
- Author(s)
  石谷孔司、水野文月、熊谷真彦、五條堀淳、林美千子、松下真実、松下孝幸、谷口康浩、近藤修、黒崎久仁彦、王瀝、植田信太郎
- Organizer
  第73回日本人類学会大会
- Data Source
  KAKENHI-PROJECT-19K16246

1. Gakuhari Takashi (70749530)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
2. 中込滋樹 (40625208)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. 和久大介 (60793578)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 植田信太郎 (20143357)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
5. 水野文月 (50735496)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
6. Kumagai Masahiko (80738716)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
7. 澤藤りかい (50814612)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 松前ひろみ (00735681)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 金原正明 (10335466)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 本橋慶一 (10527542)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 岡崎健治 (10632937)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 細川正人 (60722981)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 谷口康浩 (00197526)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
14. 米田穣 (30280712)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 工藤雄一郎 (30456636)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 近藤修 (40244347)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
17. 戸坂明日香 (40894548)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 那須浩郎 (60390704)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 大橋順 (80301141)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Ishiya Koji 石谷 孔司

Research Projects

Research Products

Co-Researchers

Paleometagenomics methods for reconstructing bioarchaeological recordsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Computational approaches for estimating sample attributes from metagenomic dataPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Ancient genomics study on histories of crop species utilization in Jananese Archiperago

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

"Shin" Paleogenomics Creates New Perspectives on the Utilization of Museum Materials

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Social Organization and Funerary Systems of Semi-Sedentary Hunter-Gatherers: reconstruction of prehistoric societies through advanced bio-archaeology

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

パレオゲノミクス解析プラットフォーム開発とその応用

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of a rapid DNA typing systemPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Journal Article] Recognition of differential culture conditions with dimensional reduction approach2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] バイオインフォマティクスによるバイオものづくり ―情報科学が加速するバイオものづくりの新展開2024

Author(s)

Journal Title

Data Source

[Journal Article] Bioarchaeological study of ancient Teotihuacans based on complete mitochondrial genome sequences and diet isotopes2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 微生物生態系の理解に向けて2022

Author(s)

Journal Title

DOI

ISSN

Year and Date

Language

Data Source

[Journal Article] Comparative Genome Analysis Reveals Accumulation of Single-Nucleotide Repeats in Pathogenic Escherichia Lineages2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Multivariate statistical monitoring system for microbial population dynamics2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A biomolecular anthropological investigation of William Adams, the first SAMURAI from England2020

Author(s)

Ishiya Koji 石谷孔司