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Sakumura Yuichi  作村 諭一

… Alternative Names

SAKUMURA Yuichi  作村 諭一

作村 勇一  サクムラ ユウイチ

SAKUMURA Yuuichi  作村 勇一

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Researcher Number 50324968
Other IDs
  • ORCIDhttps://orcid.org/0000-0003-0065-2239
Affiliation (Current) 2025: 奈良先端科学技術大学院大学, データ駆動型サイエンス創造センター, 教授
Affiliation (based on the past Project Information) *help 2021 – 2024: 奈良先端科学技術大学院大学, データ駆動型サイエンス創造センター, 教授
2022: 奈良先端科学技術大学院大学, 先端科学技術研究科, 准教授
2017 – 2020: 奈良先端科学技術大学院大学, 先端科学技術研究科, 准教授
2016 – 2017: 奈良先端科学技術大学院大学, バイオサイエンス研究科, 准教授
2012 – 2015: 愛知県立大学, 情報科学部, 准教授 … More
2014: 愛知県立大学, 情報科学部 情報科学科, 准教授
2012: 愛知県立大学, 情報科学部
2011: 奈良先端科学技術大学院大学, バイオサイエンス研究科, 特任准教授
2009 – 2010: Nara Institute of Science and Technology, 情報科学研究科, 特任准教授
2007 – 2009: Nara Institute of Science and Technology, 情報科学研究科, 准教授
2006: 奈良先端科学技術大学院大学, 情報科学研究科, 助教授
2005: 奈良先端科学技術大学院大学, 情報科学研究科, 特任助教授
2004: 奈良先端科学技術大学院大学, 情報科学研究科, 研究員(科学技術振興)(常勤形態)
2000: Graduate School of Information Sciences, NARA INSTITUTE OF SCIENCE AND TECHNOLOGY Research Associates, 情報科学研究科, 助手 Less
Review Section/Research Field
Principal Investigator
Life / Health / Medical informatics / Biological Sciences / Bioinformatics/Life informatics / Transformative Research Areas, Section (III) / Basic Section 62010:Life, health and medical informatics-related / Constructive Systems Biology / Biological Sciences
Except Principal Investigator
Biological Sciences / System genome science / Basic Section 48040:Medical biochemistry-related … More / Basic Section 57020:Oral pathobiological science-related / Basic Section 44020:Developmental biology-related / Developmental biology / 情報システム学(含情報図書館学) / Intelligent informatics / Cell biology / Biological Sciences Less
Keywords
Principal Investigator
機械学習 / 統計解析 / システム生物学 / 呼気 / 疾病診断 / がん診断 / 細胞運動 / 数理モデル / シグナル伝達 / 形態形成 … More / 分子生物学 / 定量モデル / 血管新生 / データ前処理 / 呼気内揮発性有機化合物 / 疾患診断 / 呼気揮発性有機化合物 / AI / 特徴選択 / がん / 非侵襲診断 / ガスセンサ / 呼気成分 / 呼気ガス / 確率論 / 生体生命情報学 / 遺伝子発現同調 / 確率的転写 / 細胞間コミュニケーション / 興奮性システム / 周期的遺伝子発現 / 細胞・組織 / 集団検知 / 発現同調 / 体節形成 / 力分布 / 運動極性 / メカノセンシング / Myosin II / 細胞移動 / メカノバイオロジー / 神経発達 / 細胞形態形成 / ベイズ推定 / システム同定 / 変換方程式 / 膜電位 / 軸索誘導 / 生物形態 / 数理生物 / 細胞形態 … More
Except Principal Investigator
体節 / 遺伝子発現 / マウス / Notch / 発生 / 形態形成 / シグナル伝達 / システム生物学 / 体節形成 / 発生・分化 / ロバスト性 / シミュレーション / システム同定 / 奇形 / 体軸骨格 / 心線維化 / 心筋線維化 / ビッグデータ解析 / 歯周病 / 歯周病原細菌 / ジンジパイン / 心房線維化 / 心房細動 / Porphyromonas gingivalis / 歯周炎 / 歯性感染病巣 / 歯周医学 / 神経 / 細胞の社会性 / 細胞の集団行動 / 有毛細胞 / ゼブラフィッシュ / クッペル胞 / 側線器官 / 器官サイズ / 発現制御 / Path Expression / Inference Problem / Type Dependency / Object-Oriented Database / Semi-structured Data / 経路式 / 推論問題 / 型制約 / オブジェクト指向データベース / 半構造データ / 風況予測 / ヘビーテイル / 運転行動モデリング / セミパラメトリックモデル / ノンパラメトリックベイズ法 / ジーンドセージ / 遺伝子 / Notchシグナル / ノックインマウス / Notchシグナリング / アクチン線維 / Shootin1 / 分子クラッチ / 細胞骨格 / 軸索輸送 / 神経科学 / 脳・神経 / 濃度勾配 / FGF / 時間制御 / 転写因子 / 分節化 / 生物時計 / Notch シグナル / 振動 / システム同定法 / 構造可視化 / 超解像 / ベイズ推定 / 統計解析 / 分子生物学 / タンパク質相互作用 / 分子時空間計測 / 細胞運動 / Rhoファミリー低分子量Gタンパク質 / 軸索伸長 / タンパク質ネットワーク / 神経成長 Less
  • Research Projects

    (23 results)
  • Research Products

    (92 results)
  • Co-Researchers

    (36 People)
  •  Elucidating the mechanism of angiogenesis through a quantitative model of cell movementPrincipal Investigator

    • Principal Investigator
      作村 諭一
    • Project Period (FY)
      2023 – 2024
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (III)
    • Research Institution
      Nara Institute of Science and Technology
  •  The site of action of intra- and extra-embryonic fluctuations that cause malformation and mechanisms of robustness that prevent them

    • Principal Investigator
      別所 康全
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 48040:Medical biochemistry-related
    • Research Institution
      Nara Institute of Science and Technology
  •  Comprehensive study on the effects of periodontal pathogen on the pathophysiology of atrial fibrillation

    • Principal Investigator
      Miyauchi Mutsumi
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 57020:Oral pathobiological science-related
    • Research Institution
      Hiroshima University
  •  AI diagnosis of multiple diseases by exhaled gas components and their biological interpretationPrincipal Investigator

    • Principal Investigator
      Sakumura Yuichi
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      Nara Institute of Science and Technology
  •  The mechanism of organ-size determination via social behavior of their progenitor cells in animal development

    • Principal Investigator
      Bessho Yasumasa
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 44020:Developmental biology-related
    • Research Institution
      Nara Institute of Science and Technology
  •  Mathematical Model for Fast Synchronization of Gene Expression in Somite SegmentationPrincipal Investigator

    • Principal Investigator
      Sakumura Yuichi
    • Project Period (FY)
      2017 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Constructive Systems Biology
    • Research Institution
      Nara Institute of Science and Technology
  •  Development of cancer diagnosis and prediction algorithm using exhaled gasPrincipal Investigator

    • Principal Investigator
      Sakumura Yuichi
    • Project Period (FY)
      2017 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Nara Institute of Science and Technology
  •  The system for fine tuning of signal transduction that maintains the robustness in morphogenesis

    • Principal Investigator
      Bessho Yasumasa
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Developmental biology
    • Research Institution
      Nara Institute of Science and Technology
  •  細胞形態形成のための多元的情報伝達の統合技術開発Principal Investigator

    • Principal Investigator
      作村 諭一
    • Project Period (FY)
      2013 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Aichi Prefectural University
  •  Extension of nonparametric Bayesian methods to semiparametric models and its applications

    • Principal Investigator
      Ikeda Kazushi
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Intelligent informatics
    • Research Institution
      Nara Institute of Science and Technology
  •  Force distribution and morphological change in polarized cell migrationPrincipal Investigator

    • Principal Investigator
      SAKUMURA Yuichi
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Aichi Prefectural University
  •  Alteration of the level of Notch signaling activity in mouse embryo by gene duplication of Notch

    • Principal Investigator
      BESSHO Yasumasa
    • Project Period (FY)
      2012 – 2013
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      System genome science
    • Research Institution
      Nara Institute of Science and Technology
  •  神経配線のロジック解明と多元的階層構造の解析技術の開発Principal Investigator

    • Principal Investigator
      作村 諭一
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Aichi Prefectural University
      Nara Institute of Science and Technology
  •  Slow axonal transport driven by directional actin turnover

    • Principal Investigator
      INAGAKI Naoyuki
    • Project Period (FY)
      2011 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Cell biology
    • Research Institution
      Nara Institute of Science and Technology
  •  Development of system identification methods of mesoscopic neurocircuitry based on multi-dimensional imaging data

    • Principal Investigator
      ISHII Shin
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Kyoto University
  •  The mechanism of the molecular clock that controls developmental dynamics

    • Principal Investigator
      BESSHO Yasumasa
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      System genome science
    • Research Institution
      Nara Institute of Science and Technology
  •  Quantitative Mathematical Model of Neuronal MorphogenesisPrincipal Investigator

    • Principal Investigator
      SAKUMURA Yuichi
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Aichi Prefectural University
      Nara Institute of Science and Technology
  •  細胞形状変化と分子活性の因果関係の解明Principal Investigator

    • Principal Investigator
      作村 諭一
    • Project Period (FY)
      2008 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nara Institute of Science and Technology
  •  Spontaneous Symmetry Breaking Mechanism in Biological MorphologyPrincipal Investigator

    • Principal Investigator
      SAKUMURA Yuichi
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Nara Institute of Science and Technology
  •  細胞の形状変化と分子シグナルとの多次元相互作用に関する研究

    • Principal Investigator
      石井 信
    • Project Period (FY)
      2006 – 2007
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nara Institute of Science and Technology
  •  分子シグナルから細胞運動への統合的システム生物学に関する研究

    • Principal Investigator
      石井 信
    • Project Period (FY)
      2005
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nara Institute of Science and Technology
  •  Gタンパク相互作用によって制御される軸索誘導の動作機構

    • Principal Investigator
      ISHII Shin
    • Project Period (FY)
      2004
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Nara Institute of Science and Technology
  •  Studies on Inferring Type Dependencies for Semi-structured Data

    • Principal Investigator
      ITO Minora
    • Project Period (FY)
      1999 – 2000
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      情報システム学(含情報図書館学)
    • Research Institution
      NARA INSTITUTE OF SCIENCE AND TECHNOLOGY

All 2023 2022 2020 2019 2018 2017 2016 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 Other

All Journal Article Presentation Book

  • [Book] においのセンシング、分析とその可視化、数値化2020

    • Author(s)
      作村諭一, 伊藤敏雄
    • Total Pages
      13
    • Publisher
      技術情報協会
    • ISBN
      9784861048104
    • Data Source
      KAKENHI-PROJECT-20H04283
  • [Book] Quantitative Modeling of Neuronal Polarization2012

    • Author(s)
      Sakumura Y, Inagaki N
    • Publisher
      Quantitative Modeling of Neuronal Polarization, Technological Advancements in Biomedicine for Healthcare Application
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Book] Technological Advancements in Biomedicine for Healthcare Application2012

    • Author(s)
      Yuichi Sakumura
    • Total Pages
      8
    • Publisher
      IGI global
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Book] IGI global Developmental Process Phase 12012

    • Author(s)
      Sakumura Y, Inagaki N
    • Publisher
      Quantitative Modeling of Neuronal Polarization(In press)
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Book] 遺伝(神経細胞が突起の長さを検知する仕組みと神経細胞の対称性の破れ)2011

    • Author(s)
      鳥山道則、作村論一、稲垣直之
    • Total Pages
      7
    • Publisher
      エヌ・ティー・エス
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Book] 細胞工学(細胞形態変化の定量と現象論的モデル)2010

    • Author(s)
      塚田祐基, 作村諭一
    • Total Pages
      5
    • Publisher
      秀潤社
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Journal Article] Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities2023

    • Author(s)
      Katsuyuki Kunida Nobuhiro Takagi Kazuhiro Aoki Kazushi Ikeda Takeshi Nakamura Yuichi Sakumura
    • Journal Title

      Cell Reports

      Volume: 42 Issue: 2 Pages: 1-16

    • DOI

      10.1016/j.celrep.2023.112071

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20H04283, KAKENHI-PROJECT-20K06880, KAKENHI-PROJECT-19K20400, KAKENHI-PROJECT-23K23888, KAKENHI-ORGANIZER-19H05794, KAKENHI-PLANNED-19H05798
  • [Journal Article] Discrimination of volatile organic compounds using a sensor array via a rapid method based on linear discriminant analysis2023

    • Author(s)
      Toshio Itoh, Yutaro Koyama, Yuichi Sakumura, Takafumi Akamatsu, Akihiro Tsuruta, Yoshitake Masuda, Woosuck Shin
    • Journal Title

      Sensors and Actuators B: Chemical

      Volume: 387 Pages: 1-12

    • DOI

      10.1016/j.snb.2023.133803

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20H04283
  • [Journal Article] Bayesian traction force estimation using cell boundary-dependent force priors2023

    • Author(s)
      Fujikawa Ryosuke、Okimura Chika、Kozawa Satoshi、Ikeda Kazushi、Inagaki Naoyuki、Iwadate Yoshiaki、Sakumura Yuichi
    • Journal Title

      Biophysical Journal

      Volume: 122 Issue: 23 Pages: 4542-4554

    • DOI

      10.1016/j.bpj.2023.10.032

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21K15055, KAKENHI-PUBLICLY-23H04707
  • [Journal Article] Diagnosis by Volatile Organic Compounds in Exhaled Breath from Lung Cancer Patients Using Support Vector Machine Algorithm2017

    • Author(s)
      Sakumura Yuichi、Koyama Yutaro、Tokutake Hiroaki、Hida Toyoaki、Sato Kazuo、Itoh Toshio、Akamatsu Takafumi、Shin Woosuck
    • Journal Title

      Sensors

      Volume: 17 Issue: 2 Pages: 287-287

    • DOI

      10.3390/s17020287

    • NAID

      120006537399

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17H01817
  • [Journal Article] Fast-crawling cell types migrate to avoid the direction of periodic substratum stretching2016

    • Author(s)
      Okimura, C., Ueda, K., Sakumura, Y. and Iwadate, Y.
    • Journal Title

      Cell Adhesion & Migration

      Volume: - Issue: 4 Pages: 1-11

    • DOI

      10.1080/19336918.2015.1129482

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PUBLICLY-26103524, KAKENHI-PROJECT-25330341, KAKENHI-PUBLICLY-15H01323, KAKENHI-PROJECT-26650050
  • [Journal Article] Hes7 3’UTR is required for somite segmentation function2014

    • Author(s)
      Takeshi Fujimuro, Takaaki Matsui, Yasuhide Nitanda, Tatsuro Matta, Yuichi Sakumura, Michiko Saito, Kenji Kohno, Yasukazu Nakahata and Yasumasa Bessho
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 6462-6462

    • DOI

      10.1038/srep06462

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PUBLICLY-25111718, KAKENHI-PUBLICLY-25127711, KAKENHI-PROJECT-26291050, KAKENHI-PROJECT-24228002
  • [Journal Article] Conversion of a Signal into Forces for Axon Outgrowth through Pak1-mediated Shootin1 Phosphorylation2013

    • Author(s)
      Toriyama M, Kozawa S, Sakumura Y, Inagaki N
    • Journal Title

      Curr. Biol.

      Volume: 23 Pages: 529-534

    • NAID

      120005716834

    • Data Source
      KAKENHI-PROJECT-22500279
  • [Journal Article] Conversion of a Signal into Forces for Axon Outgrowth through Pak1-mediated Shootin1 Phosphorylation2013

    • Author(s)
      Michinori Toriyama
    • Journal Title

      Current Biology

      Volume: 23 Issue: 6 Pages: 529-534

    • DOI

      10.1016/j.cub.2013.02.017

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22500279, KAKENHI-PROJECT-23700448, KAKENHI-PUBLICLY-25127713, KAKENHI-PUBLICLY-23111518
  • [Journal Article] Bayesian Cell Force Estimation Considering Force Directions2013

    • Author(s)
      Satoshi Kozawa, Yuichi Sakumura, Michinori Toriyama, Naoyuki Inagaki, Kazushi Ikeda
    • Journal Title

      Neural Process. Lett.

      Volume: - Issue: 2 Pages: 191-200

    • DOI

      10.1007/s11063-013-9320-y

    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-25102001, KAKENHI-PLANNED-25102010, KAKENHI-PROJECT-25330341
  • [Journal Article] Systems Biology of Symmetry-Breaking during Neuronal Polarity Formation2011

    • Author(s)
      Inagaki N, Toriyama M, Sakumura Y
    • Journal Title

      Dev.Neurobiol.

      Volume: 71 Issue: 6 Pages: 584-593

    • DOI

      10.1002/dneu.20837

    • NAID

      120005830836

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22500279, KAKENHI-PUBLICLY-23111518, KAKENHI-PROJECT-23700448
  • [Journal Article] The period of the somite segmentation clock is sensitive to Notch activity2011

    • Author(s)
      W.Kim, et al
    • Journal Title

      Mol.Biol.Cell

      Volume: 22 Issue: 18 Pages: 3541-3549

    • DOI

      10.1091/mbc.e11-02-0139

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21390066, KAKENHI-PROJECT-22310126, KAKENHI-PLANNED-23111005, KAKENHI-PUBLICLY-23127509
  • [Journal Article] The period of the somite segmentation clock is sensitive to Notch activity2011

    • Author(s)
      W.Kim, T.Matsui, M.Yamao, M.Ishibashi, K.Tamada, T.Takumi, K.Kohno, S.Oba, S.Ishii, Y.Sakumura, Y.Bessho
    • Journal Title

      Molecular Biology of Cell

      Volume: 22(18) Pages: 3541-3549

    • NAID

      120005716660

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22115012
  • [Journal Article] A diffusion-based neurite length-sensing mechanism involved in neuronal symmetry breaking2010

    • Author(s)
      M.Toriyama, Y.Sakumura, T.Shimada, S.Ishii, N.Inagaki
    • Journal Title

      Molecular Systems Biology

      Volume: 6

    • NAID

      120005830837

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22115012
  • [Journal Article] A Diffusion-based neurite length sensing mechanism involved in neuronal symmetry-breaking2010

    • Author(s)
      Toriyama M, Sakumura Y, Shimada T, Ishii S, Inagaki N
    • Journal Title

      Mol.Syst.Biol.

      Volume: 6 Pages: 894-894

    • NAID

      120005830837

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Journal Article] 細胞形態変化の定量と現象論的モデル2010

    • Author(s)
      塚田祐基, 作村諭一
    • Journal Title

      細胞工学(秀潤社)

      Pages: 339-343

    • Data Source
      KAKENHI-PROJECT-19680014
  • [Journal Article] Sprouty4, an FGF inhibitor, displays cyclic gene expression under the control of the notch segmentation clock in the mouse2009

    • Author(s)
      Hayashi S, Shimoda T, Nakajima M, Tsukada Y, Sakumura Y, Dale JK, Maroto M, Kohno K, Matsui T, Bessho Y.
    • Journal Title

      PSM. PToS One 4(5)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Journal Article] Quantification of local morphodynamics and local GTPase activity by edge evolution tracking2008

    • Author(s)
      Tsukada Y, Aoki K, Nakamura T, Sakumura Y, Matsuda M, Ishii S.
    • Journal Title

      PToS Comput. Biol. 4(11)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Journal Article] Stochastic Control of Spontaneous Signal Generation for Gradient Sensing in Chemotaxis2008

    • Author(s)
      Honda N, Sakumura Y, Ishii S.
    • Journal Title

      J. Theor. 255

      Pages: 259-266

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Journal Article] Stochastic resonance with a differential code in a cortical model2006

    • Author(s)
      Sakumura, Y.
    • Journal Title

      Neural Networks 19

      Pages: 469-476

    • Data Source
      KAKENHI-PROJECT-18016021
  • [Journal Article] A Molecular Model for Axon Guidance Based on Crosstalk between Rho GTPases2005

    • Author(s)
      Y.Sakumura
    • Journal Title

      Biophysical Journal 89

      Pages: 812-812

    • Data Source
      KAKENHI-PROJECT-17017028
  • [Journal Article] A Diffusion-based neurite length sensing mechanism involved in neuronal symmetry-breaking

    • Author(s)
      Toriyama M, *Sakumura Y, Shimada T, Ishii S, *Inagaki N
    • Journal Title

      Molecular Systems Biology (in press)

    • NAID

      120005830837

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Journal Article] Stochastic Resonance with Differential Code in Feedforward Network with Intra-layer Random Connections.

    • Author(s)
      Y.Sakumura
    • Journal Title

      Neural Networks (In press)

    • NAID

      10017601168

    • Data Source
      KAKENHI-PROJECT-17017028
  • [Presentation] Decoding cellular deformation from pseudo simultaneously observed Rho GTPase activities2022

    • Author(s)
      Katsuyuki Kunida & Yuichi Sakumura
    • Organizer
      International Conference on Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H04283
  • [Presentation] Quantitative conversion from Rho GTPase signals to cellular deformation by pseudo-simultaneous measurements2022

    • Author(s)
      Yuichi Sakumura
    • Organizer
      The 2nd International Conference on Genomics, Nanotech, and Bioengineering
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H04283
  • [Presentation] Machine learning diagnosis of multiple liver-related diseases by exhaled breath gas components2019

    • Author(s)
      Shingo Shirone, Mutsumi Miyauchi, Kazuhisa Ouhara, Hidemi Kurihara, Takashi Takata, Hideyuki Hyogo, Toshio Ito, Wosuck Shin, Akiko Tanaka, Kazuo Sato, Kazushi Ikeda and Yuichi Sakumura
    • Organizer
      The 20th International Conference on Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17H01817
  • [Presentation] 確率的遺伝子発現をする未分節中胚葉の発現同調モデル2019

    • Author(s)
      櫻井達也、山田達也、野添光、池田和司、別所康全、作村諭一
    • Organizer
      第42回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-17KT0112
  • [Presentation] 確率的遺伝子発現をする未分節中胚葉の発現同調モデル2019

    • Author(s)
      櫻井達也, 山田達也, 野添光, 池田和司, 別所康全, 作村諭一
    • Organizer
      日本分子生物学会
    • Data Source
      KAKENHI-PROJECT-18H02451
  • [Presentation] Stochasticity Promotes Synchronized Gene Expression between Cells in Somite Segmentation2018

    • Author(s)
      Hikaru Nozoe,Tatsuya Yamada,Yuichi Sakumura,Yasumasa Bessho,Kazushi Ikeda
    • Organizer
      Biophysical Society 62nd Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17KT0112
  • [Presentation] Feature Selection using Distance from Classification Boundary and Monte Carlo Simulation2018

    • Author(s)
      Koyama Y, Ikeda K, Sakumura Y
    • Organizer
      The 25th International Conference on Neural Information Processing
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17H01817
  • [Presentation] A negative feedback loop of Nrarp provides robustness to the somite segmentation clock2014

    • Author(s)
      Nitanda Y, Kim W, Matsui T, Nakahata Y, Sakumura Y, Bessho Y
    • Organizer
      The 62nd NIBB Conference Force in Development
    • Place of Presentation
      Okazaki, Japan
    • Year and Date
      2014-11-17
    • Data Source
      KAKENHI-PROJECT-26291050
  • [Presentation] Axonal transport toward growth cones driven by directional actin turnover2014

    • Author(s)
      勝野弘子, 鳥山道則, 作村諭一,池田和司,水野健作,稲垣直之
    • Organizer
      生命分子システムにおける動的秩序形成と高次機能発現第2回公開シンポジウム
    • Place of Presentation
      京都市
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Axonal transport toward growth cones driven by directional actin turnover2014

    • Author(s)
      勝野弘子,鳥山道則,作村諭一,池田和司,水野健作,稲垣直之
    • Organizer
      生命分子システムにおける動的秩序形成と高次機能発現 第2回公開シンポジウム
    • Place of Presentation
      キャンパスプラザ京都(京都府京都市)
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Spontaneous Symmetry Breaking in Neural Morphology2014

    • Author(s)
      Sakumura Y, Inagaki N
    • Organizer
      Society for Industrial and Applied Mathematics annual meeting 2014
    • Place of Presentation
      Chicago
    • Invited
    • Data Source
      KAKENHI-PROJECT-25330341
  • [Presentation] 神経細胞の形態形成モデル2014

    • Author(s)
      作村諭一
    • Organizer
      立命館大学視覚科学統合研究センターシンポジウム
    • Place of Presentation
      立命館大学
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] アクチンのトレッドミルによって引き起こされる遅い軸索輸送2013

    • Author(s)
      勝野弘子,鳥山道則,作村諭一,池田和司,水野健作,稲垣直之
    • Organizer
      Neuro2013
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一,前野貴則,稲垣直之
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      ウインクあいち(愛知県名古屋市)
    • Invited
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] アクチンのトレッドミルによって引き起こされる遅い軸索輸送2013

    • Author(s)
      勝野弘子, 鳥山道則, 作村諭一, 池田和司, 水野健作, 稲垣直之
    • Organizer
      Neuro2013
    • Place of Presentation
      京都市
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Rho ファミリーG タンパク質による細胞形態形成の定量数理モデル2013

    • Author(s)
      Yuichi Sakumura
    • Organizer
      Neuro2013
    • Place of Presentation
      京都国際会館
    • Year and Date
      2013-06-21
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Irregularity in molecular transport polarizes neuronal morphology2013

    • Author(s)
      Sakumura Y, Maeno T, Inagaki N
    • Organizer
      第65回日本細胞生物学会
    • Place of Presentation
      ウインクあいち
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一, 前野貴則, 稲垣直之
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      愛知県名古屋市
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一
    • Organizer
      第65回日本細胞生物基質に埋まるビーズ(黒点) の変移データからの力推定 (白矢印) 。白線領域は成長 円錐のエッジを表す。 学会大会(招待講演)
    • Place of Presentation
      愛知県産業労働センター
    • Year and Date
      2013-06-20
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] 分子輸送の不規則性が神経形態を極性化する2013

    • Author(s)
      作村諭一
    • Organizer
      第65回日本細胞生物学会大会
    • Place of Presentation
      愛知県産業労働センター
    • Invited
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] RhoファミリーGタンパク質による細胞形態形成の定量数理モデル2013

    • Author(s)
      Yuichi Sakumura
    • Organizer
      Neuro2013
    • Place of Presentation
      京都国際会館
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] 機械学習を用いた細胞内の分子システム同定2013

    • Author(s)
      作村諭一、山田達也
    • Organizer
      平成25年 電気学会 電子・情報・システム部門大会
    • Place of Presentation
      北見工業大学
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] Quantitative modeling of cell morphogenesis by Rho family small GTPases2013

    • Author(s)
      Sakumura Y
    • Organizer
      第36回日本神経科学大会
    • Place of Presentation
      京都国際会館
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] 細胞形態の定量化のためのShape Contextの応用2012

    • Author(s)
      中平悠太, 作村諭一, 中村岳史, 池田和司
    • Organizer
      電子情報通信学会総合大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2012-03-20
    • Data Source
      KAKENHI-PUBLICLY-23127509
  • [Presentation] Cell clustering required for proper organogenesis2012

    • Author(s)
      Matta T, TaharaN, Kakinuma H, Hirate Y, Okamoto H, Bessho Y, Sakumura Y, and Matsui T
    • Organizer
      第18回小型魚類研究会
    • Place of Presentation
      京都市
    • Year and Date
      2012-09-22
    • Data Source
      KAKENHI-PROJECT-22310126
  • [Presentation] Quantitative modeling of cell morphogenesis by Rho family small GTPases2012

    • Author(s)
      Sakumura Y
    • Organizer
      US-Japan Brain Research Cooperative Program
    • Place of Presentation
      New Orleans
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Rho GTPasesによる細胞形態制御の数理モデル2012

    • Author(s)
      作村諭一
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学
    • Invited
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] 力学過程を介した細胞形態制御の定量数理モデル2012

    • Author(s)
      田中大河, 中村岳史, 池田和司, 作村諭一
    • Organizer
      電子情報通信学会総合大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2012-03-20
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Slow axonal transport driven by directional actin treadmilling2012

    • Author(s)
      勝野弘子, 鳥山道則, 作村諭一, 池田和司, 水野健作, 稲垣直之
    • Organizer
      2012 Annual Meeting of the American Society for Cell Biology
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2012-12-18
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] 細胞運動のための力と生化学の相互作用2012

    • Author(s)
      作村諭一
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-09-22
    • Data Source
      KAKENHI-PUBLICLY-23127509
  • [Presentation] Rho GTPases による細胞形態制御の数理モデル2012

    • Author(s)
      作村諭一, 田中大河, 池田和司, 中村岳史
    • Organizer
      日本植物学会第76回大会シンポジウム
    • Place of Presentation
      兵庫県立大学
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Sparse feature extraction to find key kinase for neurite growth2012

    • Author(s)
      Maruno Y, Miyamoto A, Sakumura Y, Ikeda K
    • Organizer
      電子情報通信学会総合大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2012-03-20
    • Data Source
      KAKENHI-PUBLICLY-23127509
  • [Presentation] An Estimation of Cell Forces with Hierarchical Bayes Approach Considering Cell Morphology2012

    • Author(s)
      Kozawa S, Sakumura Y, Toriyama M, Inagaki N, Ikeda K
    • Organizer
      19th International Conference on Neural Information Processing (ICONIP 2012)
    • Place of Presentation
      Doha
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Slow axonal transport driven by directional actin treadmilling of anchored actin filaments2012

    • Author(s)
      勝野弘子, 鳥山道則, 作村諭一, 池田和司, 水野健作, 稲垣直之
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2012-09-19
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Identification of a molecular system that regulates growth cone membrane potential during growth cone guidance2011

    • Author(s)
      Yamada T, Jimbo HC, Ishii S, Nishiyama M, Hong K, Sakumura Y
    • Organizer
      Computational Neuroscience Society 2011 (CNS*2011)
    • Place of Presentation
      スウェーデン・ストックホルム
    • Year and Date
      2011-07-26
    • Data Source
      KAKENHI-PUBLICLY-23127509
  • [Presentation] Identification of Axon Growth Factor by Compressed Sensing2011

    • Author(s)
      Maruno Y, Miyamoto A, Al-Ali H, Lemmon V, Sakumura Y, Ikeda K
    • Organizer
      第14回情報論的学習理論ワークショップ(IBIS2011)
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2011-11-10
    • Data Source
      KAKENHI-PUBLICLY-23127509
  • [Presentation] Simulation Analysis of the Network of the Stochastic Spike Generation Model Imitating the Hodgkin-Huxley Neuron2011

    • Author(s)
      Sakumura Y.
    • Organizer
      International Conference on Modeling and Simulation Technology (JSST2011)
    • Place of Presentation
      東海大学
    • Year and Date
      2011-10-23
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Neural polarization by an economizing system in neurite elongation2011

    • Author(s)
      Sakumura Y, Inagaki N
    • Organizer
      EMBO Conference Series on Systems Dynamics of Intracellular Communication (SPATIAL 2011)
    • Place of Presentation
      スイス・エンゲルベルク
    • Year and Date
      2011-05-16
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] Cell clustering mechanism for organogenesis in zebrafish2011

    • Author(s)
      Matsuta T, Tahara M, Sumino E,Kakinuma H, Hirate Y, Okamoto H,Bessho Y, Sakumura Y, Matsui T
    • Organizer
      第17回小型魚類研究会
    • Place of Presentation
      三島市
    • Year and Date
      2011-09-08
    • Data Source
      KAKENHI-PROJECT-22310126
  • [Presentation] 独立成分分析を用いた初期視覚野の二重反対色同心円型受容野の形成2010

    • Author(s)
      青木孝剛, 五十嵐康伸, 木村塁, 今基織, 作村諭一, 石井信
    • Place of Presentation
      玉川大学
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Multimodal feedback control for neuronal morphological polarization2010

    • Author(s)
      Sakumura Y, Toriyama M, Inagaki N
    • Organizer
      The 33rd Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      神戸
    • Year and Date
      2010-09-04
    • Data Source
      KAKENHI-PROJECT-22500279
  • [Presentation] A quantitative modeling of neural morphological polarization2009

    • Author(s)
      Sakumura Y
    • Organizer
      Asia Simulation Conference
    • Place of Presentation
      立命館大学
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative modeling of neural morphological polarization2009

    • Author(s)
      Sakumura Y
    • Organizer
      Asia Simulation Conference
    • Place of Presentation
      立命館大学
    • Data Source
      KAKENHI-PROJECT-20016018
  • [Presentation] 統計的手法を用いた神経軸索の形態予測2009

    • Author(s)
      内海将人, 作村諭一, 福西昭子, 山本亘彦, 石井信
    • Organizer
      電子情報通信学会技術研究報告
    • Place of Presentation
      玉川大学
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative modeling of neural morphological polarization2009

    • Author(s)
      Sakumura Y
    • Organizer
      Asia Simulation Conference(JSST2009)
    • Place of Presentation
      同志社大学
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] 脊椎動物の発達過程における分節時計の分子システム2009

    • Author(s)
      伊坂弥花子, 山尾将隆, 作村諭一, 金雄, 松井貴輝, 別所康全, 石井信
    • Place of Presentation
      京都市
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative description of polarization in neural morphology2008

    • Author(s)
      Sakumura Y.
    • Organizer
      バイオスーパーコンピューティング・シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2008-12-26
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative mathematical description of neural polarity2008

    • Author(s)
      Sakumura Y.
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative mathematical description of neural polarity2008

    • Author(s)
      Sakumura Y
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Data Source
      KAKENHI-PROJECT-20016018
  • [Presentation] On the synchrony of morphological and molecular signaling events in cell migration2008

    • Author(s)
      Dauwels, J., Tsukada, Y., Sakumura, Y., Ishii, S., Aoki, K., Nakamura, T., Matsuda, M., Vialatte, F., Cichocki, A.
    • Organizer
      International Conference on Neural Information Processing (ICONIP2008)
    • Place of Presentation
      オークランドニュージーランド
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Quantitative Morphodynamic Analysis of FRET time-lapse imaging2008

    • Author(s)
      Tsukada, Y., Aoki, K., Sakumura, Y., Nakamura, T., Matsuda, M., Ishii, S.
    • Organizer
      International Conference on Systems Biology (ICSB 2008)
    • Place of Presentation
      ヨーテボリスウェーデン
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative mathematical description of neural polarity2008

    • Author(s)
      Sakumura Y
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸市(シンポジウム)
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Rho/Rho-kinaseによるミオシンの動的リン酸化制御システム2008

    • Author(s)
      河野(金兒)貴子, 本田直樹, 塚田祐基, 山尾将隆, 作村諭一, 石井信
    • Organizer
      第31回日本分子生物学会年会
    • Place of Presentation
      神戸市
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] A quantitative description of polarization in neural morphology2008

    • Author(s)
      Sakumura Y
    • Organizer
      バイオスーパーコンピゴーティング・シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2008-12-25
    • Data Source
      KAKENHI-PROJECT-20016018
  • [Presentation] A quantitative description of polarization in neural morphology2008

    • Author(s)
      Sakumura Y, Toriyama M, Inagaki N, Ishii S
    • Organizer
      バイオスーパーコンピューティング・シンポジゥム(BSCS)
    • Place of Presentation
      東京丸の内
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Quantitative Morphodynamic Analysis of Time-Lapse Imaging by Edge Evolution Tracking2007

    • Author(s)
      Tsukada, Y., Sakumura, Y., Ishii, S.
    • Organizer
      International Conference on Neural Information Processing (ICONIP 2007)
    • Place of Presentation
      北九州
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Spontaneous signal generation induced by reaction noise for gradient sensing in chemotaxi s2007

    • Author(s)
      Naoki, H., Sakumura, Y., Ishii, S.
    • Organizer
      International Conference of Systems Biology (ICSB 2007)
    • Place of Presentation
      米国カリフォルニア州
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] シグナル伝達の拡散と局所性を利用したシナプス可塑性2007

    • Author(s)
      作村諭一
    • Organizer
      2007年度シナプス研究会
    • Place of Presentation
      生理学研究所
    • Data Source
      KAKENHI-PROJECT-19680014
  • [Presentation] Mechanobiology for membrane potential-dependent neuronal axon guidance

    • Author(s)
      Yuichi Sakumura
    • Organizer
      MBI-Japan Joint Symposium, Mechanobiology of Development and Multicellular Dynamics
    • Place of Presentation
      National University of Singapore, Singapore
    • Year and Date
      2014-12-02 – 2014-12-04
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] Slow axonal transport driven by directional actin treadmilling of anchored actin filaments

    • Author(s)
      Katsuno, H., Toriyama, M., Sakumura, Y., Ikeda, K. Mizuno, K., and Inagaki, N.
    • Organizer
      第35回 日本神経科学大会
    • Place of Presentation
      愛知県名古屋市
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Slow axonal transport driven by directional actin treadmilling

    • Author(s)
      Katsuno, H., Toriyama, M., Sakumura, Y., Ikeda, K. Mizuno, K., and Inagaki, N.
    • Organizer
      2012 Annual Meeting of the American Society for Cell Biology
    • Place of Presentation
      San Francisco, USA
    • Data Source
      KAKENHI-PROJECT-23370088
  • [Presentation] Bayesian estimation of traction force generated by neuronal growth cone

    • Author(s)
      Satoshi Kozawa, Yuichi Sakumura, Michinori Toriyama, Naoyuki Inagaki, Kazushi Ikeda
    • Organizer
      Society for Neuroscience Annual Meeting
    • Place of Presentation
      Washington DC convention center, USA
    • Year and Date
      2014-11-15 – 2014-11-19
    • Data Source
      KAKENHI-PROJECT-25330341
  • [Presentation] Spontaneous Symmetry Breaking in Neural Morphology

    • Author(s)
      Yuichi Sakumura
    • Organizer
      Society for Industrial and Applied Mathematics annual meeting 2014
    • Place of Presentation
      The Palmer House, Chicago, USA
    • Year and Date
      2014-07-07 – 2014-07-11
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25127713
  • [Presentation] Computational model of directional migration of crawling cell on anisotropic substratum

    • Author(s)
      Sakumura Y, Okimura C, Iwadate Y
    • Organizer
      International Symposium on Mechanobiology 2014
    • Place of Presentation
      岡山大学
    • Year and Date
      2014-05-20 – 2014-05-23
    • Invited
    • Data Source
      KAKENHI-PROJECT-25330341
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