SUGAWARA Takeshi 菅原武志

Researcher Number	60713005
Other IDs
Affiliation (Current)	2025: 高知大学, データサイエンスセンター, 特任講師
Affiliation (based on the past Project Information) *help	2025: 高知大学, データサイエンスセンター, 特任講師 2023: 高知大学, データサイエンスセンター, 特任講師 2021 – 2022: 東京大学, 大学院理学系研究科(理学部), 特任研究員 2018 – 2020: 東京大学, 大学院医学系研究科(医学部), 特任助教 2017: 広島大学, 理学研究科, 研究員 2017: 広島大学, 大学院理学研究科, 特任助教 2016 – 2017: 広島大学, 理学研究科, 特任助教
Review Section/Research Field	Principal Investigator Basic Section 43040:Biophysics-related / System genome science Except Principal Investigator Thin film/Surface and interfacial physical properties / System genome science
Keywords	Principal Investigator クロマチン走化性 / 酵素走化性 / 分子ケモフォレシス / モデル化とシミュレーション / 理論生物物理学 / 細胞周期・細胞分化 / データ駆動型数理モデリング / 核内染色体構造 / 3Dゲノム地形 / 準安定構造 … More / モデリング / 染色体構造 / クロマチン動態 / シミュレーション / 数理モデリング / ゲノム構造 / データ駆動 / 数理モデル / ゲノム構造変化 … More Except Principal Investigator コーティング / アクチュエータ / 交流電解研磨 / 真空コンダクタンス / 回転振動機構 / ナノ粒子 / 触媒 / 走査プローブ顕微鏡 / イオン選別 / 細胞工学 / 走査型プローブ顕微鏡 / ナノピペット / 温度イメージング / 染色体構造 / 蛍光寿命イメージング / フラクタル次元 / クロマチン構造 Less

ケモフォレシス：生体高分子走化性の理論構築と生命現象への応用Principal Investigator
- Principal Investigator
  
  菅原武志
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Kochi University
Elucidating the 3D Genome LandscapePrincipal Investigator
- Principal Investigator
  
  Sugawara Takeshi
- Project Period (FY)
  2017 – 2023
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  Kochi University
  The University of Tokyo
  Hiroshima University
Simultaneous imaging of chromatin fractal dimensions and temperature in living cell nucleus
- Principal Investigator
  
  Shinkai Soya
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  System genome science
- Research Institution
  Institute of Physical and Chemical Research
  Hiroshima University
Development of component technology for scanning microinjection microscope
- Principal Investigator
  
  Takami Tomohide
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Thin film/Surface and interfacial physical properties
- Research Institution
  Kogakuin University

All 2024 2023 2022 2021 2020 2019 2017 2016 2015

All Journal Article Presentation

[Journal Article] Chemophoresis engine: A general mechanism of ATPase-driven cargo transport2022
- Author(s)
  Takeshi Sugawara, Kunihiko Kaneko
- Journal Title
  
  PLoS Computational Biology
  
  Volume: 18 Issue: 7 Pages: e1010324-e1010324
- DOI
  10.1371/journal.pcbi.1010324
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K15050, KAKENHI-PROJECT-20H00123
[Journal Article] Chemophoresis Engine: Universal Principle of ATPase-driven Cargo Transport2021
- Author(s)
  Sugawara Takeshi、Kaneko Kunihiko
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2021.10.15.463834
- Open Access
- Data Source
  KAKENHI-PROJECT-17K15050
[Journal Article] PHi-C: deciphering Hi-C data into polymer dynamics2020
- Author(s)
  Shinkai Soya、Nakagawa Masaki、Sugawara Takeshi、Togashi Yuichi、Ochiai Hiroshi、Nakato Ryuichiro、Taniguchi Yuichi、Onami Shuichi
- Journal Title
  
  NAR Genomics and Bioinformatics
  
  Volume: 2 Issue: 2
- DOI
  10.1093/nargab/lqaa020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K06612, KAKENHI-PROJECT-17K15050, KAKENHI-PLANNED-17H06331, KAKENHI-PUBLICLY-18H04720, KAKENHI-PLANNED-18H05412, KAKENHI-PROJECT-20K20458, KAKENHI-PLANNED-18H05531, KAKENHI-PROJECT-19H02567
[Journal Article] Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization2020
- Author(s)
  Soya Shinkai, Takeshi Sugawara, Hisashi Miura, Ichiro Hiratani, Shuichi Onami
- Journal Title
  
  Biophysical Journal
  
  Volume: 118 Issue: 9 Pages: 2220-2228
- DOI
  10.1016/j.bpj.2020.02.020
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-18H04720, KAKENHI-PLANNED-18H05412, KAKENHI-PLANNED-18H05530, KAKENHI-PROJECT-20K08698
[Journal Article] Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast2019
- Author(s)
  Ito H, Sugawara T, Shinkai S, Mizukawa S, Kondo A, Senda H, Sawai K, Ito K, Suzuki S, Takaine M, Yoshida S, Imamura H, Kitamura K, Namba T, Tate SI, Ueno M
- Journal Title
  
  Biochem Biophys Res Commun
  
  Volume: 511 Issue: 4 Pages: 820-825
- DOI
  10.1016/j.bbrc.2019.02.128
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K07502, KAKENHI-PROJECT-18K19301, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-18H04720, KAKENHI-PROJECT-17H03654, KAKENHI-PROJECT-16H04781
[Journal Article] Physical properties of the chromosomes and implications for development2017
- Author(s)
  Sugawara Takeshi、Kimura Akatsuki
- Journal Title
  
  Development, Growth & Differentiation
  
  Volume: 59 Issue: 5 Pages: 405-414
- DOI
  10.1111/dgd.12363
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15KT0083, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-16H00816, KAKENHI-PROJECT-15H04372
[Journal Article] Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans2017
- Author(s)
  Arai Ritsuko、Sugawara Takeshi、Sato Yuko、Minakuchi Yohei、Toyoda Atsushi、Nabeshima Kentaro、Kimura Hiroshi、Kimura Akatsuki
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 3631-3631
- DOI
  10.1038/s41598-017-03483-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0083, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-16H00816, KAKENHI-PLANNED-25116005, KAKENHI-PROJECT-15H04372, KAKENHI-PROJECT-16H06280
[Presentation] 液滴-遺伝子相互作用の現象論モデル2024
- Author(s)
  菅原武志
- Organizer
  日本物理学会2024年春季大会
- Data Source
  KAKENHI-PROJECT-17K15050
[Presentation] 生成モデルを用いた3Dゲノム動態予測2024
- Author(s)
  菅原武志
- Organizer
  日本物理学会2024年春季大会
- Data Source
  KAKENHI-PROJECT-17K15050
[Presentation] べん毛モーター時系列テ゛ータ解析とエントロピー生成率(EPR)推定2023
- Author(s)
  菅原武志
- Organizer
  新学術領域研究「情報物理学でひもとく生命の秩序と設計原理」第７回領域会議
- Data Source
  KAKENHI-PROJECT-17K15050
[Presentation] 液滴誘導型細胞内走化性の理論2023
- Author(s)
  菅原武志
- Organizer
  第61日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-17K15050
[Presentation] Chemophoresis engine: Theory of cargo transports using ATP hydrolysis2017
- Author(s)
  Takeshi Sugawara, Kunihiko Kaneko
- Organizer
  ON Workshop: Sensors, Motors and Behaviors at the Origin of Life
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15050
[Presentation] Vacuum Conductance of Rare Gas through Glass Nanopipette2016
- Author(s)
  Tomohide Takami, Kiwamu Nishimoto, Tadahiko Goto, Shuichi Ogawa, Futoshi Iwata, Takeshi Sugawara, and Yuji Takakuwa
- Organizer
  The 20th International Vacuum Congress (IVC-20)
- Place of Presentation
  BEXCO, Busan
- Year and Date
  2016-08-21
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K04678
[Presentation] 細胞へのインジェクションに用いるナノピペットの非破壊評価法の開発2016
- Author(s)
  高見知秀,菅原武志
- Organizer
  生命動態システム科学四拠点合同シンポジウム
- Place of Presentation
  シェラトンホテル広島
- Year and Date
  2016-03-25
- Data Source
  KAKENHI-PROJECT-15K04678
[Presentation] ナノピペットにおける希ガスの真空コンダクタンスの理論計算2015
- Author(s)
  菅原武志, ○高見知秀，高桑雄二
- Organizer
  第76回応用物理学会秋季学術講演会
- Place of Presentation
  名古屋国際会議場
- Year and Date
  2015-09-13
- Data Source
  KAKENHI-PROJECT-15K04678

1. Shinkai Soya (60547058)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. OKABE Kohki (20455398)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. OCHIAI Hiroshi (60640753)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
4. Takami Tomohide (40272455)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
5. IWATA Futoshi (30262794)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. TAKAKUWA Yuji (20154768)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
7. TATE Shin-ichi (20216998)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. SAITO Mikako (20291346)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. MATSUOKA Hideaki (10143653)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. TAKEDA Shunsuke

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. KIMURA Akatsuki

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
12. 上野勝

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

SUGAWARA Takeshi 菅原 武志

Research Projects

Research Products

Co-Researchers

ケモフォレシス：生体高分子走化性の理論構築と生命現象への応用Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidating the 3D Genome LandscapePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Simultaneous imaging of chromatin fractal dimensions and temperature in living cell nucleus

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of component technology for scanning microinjection microscope

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Chemophoresis engine: A general mechanism of ATPase-driven cargo transport2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chemophoresis Engine: Universal Principle of ATPase-driven Cargo Transport2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] PHi-C: deciphering Hi-C data into polymer dynamics2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Physical properties of the chromosomes and implications for development2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans2017

Author(s)

Journal Title

DOI

Data Source

[Presentation] 液滴-遺伝子相互作用の現象論モデル2024

Author(s)

Organizer

Data Source

[Presentation] 生成モデルを用いた3Dゲノム動態予測2024

Author(s)

Organizer

Data Source

[Presentation] べん毛モーター時系列テ゛ータ解析とエントロピー生成率(EPR)推定2023

Author(s)

Organizer

Data Source

[Presentation] 液滴誘導型細胞内走化性の理論2023

Author(s)

Organizer

Data Source

[Presentation] Chemophoresis engine: Theory of cargo transports using ATP hydrolysis2017

SUGAWARA Takeshi 菅原武志