UEDA Nobuhisa 上田展久

Researcher Number	80346048
Other IDs
Affiliation (based on the past Project Information) *help	2006: 京大, 化学研究所, 助手 2002 – 2006: 京都大学, 化学研究所, 助手
Review Section/Research Field	Principal Investigator Intelligent informatics / Bioinformatics/Life informatics Except Principal Investigator Bioinformatics/Life informatics / 計算機科学
Keywords	Principal Investigator 糖鎖 / 動的計画法 / ラベル付き順序木 / ラベルつき順序木 / 分類 / 化学構造 / 周辺化グラフカーネル / 確率モデル / EMアルゴリズム / 確率文脈自由文法 / 統計的言語モデル … More Except Principal Investigator … More モチーフ抽出 / 最大共通部分点集合 / サポートベクタマシン / カーネル法 / アルゴリズム / パターンマッチング / subcellular location prediction / chemical structure / support vector machine / kernel method / Euler string / edit distance / triangle inequality / sequence alignment / 糖鎖 / 位置特異的スコア行列 / フランス / 国際情報交換 / サポートベクターマシン / タンパク質細胞内局在部位予測 / グラフカーネル / 生物情報ネットワーク / タンパク質配列 / クラスタリング / 平面的グラフ / 木構造 / 特徴ベクトル / 細胞内局在部位予測 / 化学構造 / オイラー文字列 / 編集距離 / 三角不等式 / 配列アラインメント / Local alignment / Position specific score matrix / Kernel method / Algorithms / Sequence motif / Pattern matching / Bioinformatics / ローカルサーチ / 相対エントロピー / GIBBSサンプリング / 構造アライメント / スポットマッチング / 電気泳動 / 最大クリーク / 近似マッチング / 合同性判定 / 点集合 / ホモロジー検索 / ローカルアライメント / 局所アライメント / 位置依存スコア行列 / 配列モチーフ / バイオインフォマティクス Less

実構造データに対する確率モデルの学習手法の開発Principal Investigator
- Principal Investigator
  
  上田展久
- Project Period (FY)
  2006
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Intelligent informatics
- Research Institution
  Kyoto University
Pattern Matching Methods for Structured Data in Bioinformatics
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University
配列の対を生成する統計的言語モデルの開発と配列解析への適用Principal Investigator
- Principal Investigator
  
  上田展久
- Project Period (FY)
  2003 – 2005
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Kyoto University
Algorithms for Extraction of Common Patterns from Data in Bioinformatics
- Principal Investigator
  
  AKUTSU Tatsuya
- Project Period (FY)
  2001 – 2003
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  計算機科学
- Research Institution
  Kyoto University

All 2005 2004 2003

All Journal Article

[Journal Article] A probabilistic model for mining labeled ordered trees : Capturing patterns in carbohydrate sugar chains2005
- Author(s)
  N.Ueda, K.F.Aoki-Kinoshita, A.Yamaguchi, T.Akutsu, H.Mamitsuka
- Journal Title
  
  IEEE Transactions on Knowledge and Data Engineering 17(8)
  
  Pages: 1051-1064
- Data Source
  KAKENHI-PROJECT-15700244
[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005
- Author(s)
  S. Matsuda, J-P. Vert, H. Saigo, N. Ueda, H. Toh, T. Akutsu
- Journal Title
  
  Protein Science 14
  
  Pages: 2804-2813
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] A probabilistic model for mining labeled ordered trees : Capturing patterns in carbohydrate sugar chains2005
- Author(s)
  N.Ueda, K.F.Aoki, A.Yamaguchi, T.Akutsu, H.Mamitsuka
- Journal Title
  
  IEEE Transactions on Knowledge and Data Engineering (印刷中)
- Data Source
  KAKENHI-PROJECT-15700244
[Journal Article] Graph kernels for molecular structure-activity relationship analysis with support vector machines2005
- Author(s)
  P.Mahe, N.Ueda, T.Akutsu, J.-L.Perret, J.-P.Vert
- Journal Title
  
  Journal of Chemical Information and Modeling 45(4)
  
  Pages: 939-951
- Data Source
  KAKENHI-PROJECT-15700244
[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005
- Author(s)
  S.Matsuda, J-P.Vert, H.Saigo, N.Ueda, H.Toh, T.Akutsu
- Journal Title
  
  Protein Science 14
  
  Pages: 2804-2813
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Graph kernels for molecular structure-activity relationship analysis with support vector machines2005
- Author(s)
  P.Mahe, N.Ueda, T.Akutsu, J-L.Perret J-P.Vert
- Journal Title
  
  Journal of Chemical Information and Modeling 45
  
  Pages: 939-951
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005
- Author(s)
  S., Matsuda, J-P., Vert, H., Saigo, N., Ueda, H., Toh, T.,Akutsu
- Journal Title
  
  Protein Science 14
  
  Pages: 2804-2813
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] KCaM(KEGG Carbohydrate Matcher):a software tool for analyzing the structures of carbohydrate sugar chains2004
- Author(s)
  K. F. Aoki, A. Yamaguchi, N. Ueda, T. Akutsu, H. Mamitsuka, S. Goto, M. Kanehisa
- Journal Title
  
  Nucleic Acids Research 32
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] KCaM (KEGG Carbohydrate Matcher) : a software tool for analyzing the structures of carbohydrate sugar chains2004
- Author(s)
  K.F.Aoki, A.Yamaguchi, N.Ueda, T.Akutsu, et al.
- Journal Title
  
  Nucleic Acids Research 32
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Extensions of marginalized graph kernels2004
- Author(s)
  P., Mahe, N., Ueda, T., Akutsu,J-L., Perret, J-P., Vert
- Journal Title
  
  Proc. 21st Int. Conf. Machine Learning (ICML 2004)
  
  Pages: 552-559
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Extensions of marginalized graph kernels2004
- Author(s)
  P.Mahe, N.Ueda, T.Akutsu, J-L.Perret, J-P.Vert
- Journal Title
  
  Proc.21st Int.Conf.Machine Learning(ICML 2004)
  
  Pages: 552-559
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Extensions of marginalized graph kernels2004
- Author(s)
  P. Mahe, N. Ueda, T. Akutsu, J-L. Perret, J-P. Vert
- Journal Title
  
  Proc. 21st Int. Conf. Machine Learning(ICML 2004)
  
  Pages: 552-559
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Protein homology detection using string alignment kernels2004
- Author(s)
  H.Saigo, J-P.Vert, N.Ueda, T.Akutsu
- Journal Title
  
  Bioinformatics 20
  
  Pages: 1682-1689
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-13680394
[Journal Article] KCaM (KEGG Carbohydrate Matcher) : a software tool for analyzing the structures of carbohydrate sugar chains2004
- Author(s)
  K.F., Aoki, A., Yamaguchi, N., Ueda, T., Akutsu, H., Mamitsuka, S., Goto, M., Kanehisa
- Journal Title
  
  Nucleic Acids Research 32
  
  Pages: 267-272
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-16300092
[Journal Article] Inferring strengths of protein-protein interactions from experimental data using linear programming2003
- Author(s)
  M.Hayashida, N.Ueda, T.Akutsu
- Journal Title
  
  Bioinformatics 19
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-13680394

1. AKUTSU Tatsuya (90261859)

# of Collaborated Projects: 2 results

# of Collaborated Products: 12 results
2. MIYANO Satoru (50128104)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. MARUYAMA Osamu (20282519)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. HAYASHIDA Morihiro (40402929)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

UEDA Nobuhisa 上田 展久

Research Projects

Research Products

Co-Researchers

実構造データに対する確率モデルの学習手法の開発Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Pattern Matching Methods for Structured Data in Bioinformatics

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

配列の対を生成する統計的言語モデルの開発と配列解析への適用Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Algorithms for Extraction of Common Patterns from Data in Bioinformatics

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] A probabilistic model for mining labeled ordered trees : Capturing patterns in carbohydrate sugar chains2005

Author(s)

Journal Title

Data Source

[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005

Author(s)

Journal Title

Description

Data Source

[Journal Article] A probabilistic model for mining labeled ordered trees : Capturing patterns in carbohydrate sugar chains2005

Author(s)

Journal Title

Data Source

[Journal Article] Graph kernels for molecular structure-activity relationship analysis with support vector machines2005

Author(s)

Journal Title

Data Source

[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005

Author(s)

Journal Title

Data Source

[Journal Article] Graph kernels for molecular structure-activity relationship analysis with support vector machines2005

Author(s)

Journal Title

Data Source

[Journal Article] A novel representation of protein sequences for prediction of subcellular location using support vector machines2005

Author(s)

Journal Title

Description

Data Source

[Journal Article] KCaM(KEGG Carbohydrate Matcher):a software tool for analyzing the structures of carbohydrate sugar chains2004

Author(s)

Journal Title

Description

Data Source

[Journal Article] KCaM (KEGG Carbohydrate Matcher) : a software tool for analyzing the structures of carbohydrate sugar chains2004

Author(s)

Journal Title

Data Source

[Journal Article] Extensions of marginalized graph kernels2004

Author(s)

Journal Title

Description

Data Source

[Journal Article] Extensions of marginalized graph kernels2004

Author(s)

Journal Title

Data Source

[Journal Article] Extensions of marginalized graph kernels2004

Author(s)

Journal Title

Description

UEDA Nobuhisa 上田展久