SHINODA KEIKO 篠田恵子

… Alternative Names

篠田恵子シノダケイコ

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Researcher Number	80646951
Other IDs
Affiliation (Current)	2025: 統計数理研究所, 先端データサイエンス研究系, 特任助教
Affiliation (based on the past Project Information) *help	2023 – 2024: 統計数理研究所, ものづくりデータ科学研究センター, 特任助教 2023: 東京大学, 先端科学技術研究センター, 特任助教 2021 – 2022: 東京大学, 大学院農学生命科学研究科(農学部), 特任助教 2020: 東京大学, 生物生産工学研究センター, 特任助教 2019: 東京大学, 先端科学技術研究センター, 特任助教 2015 – 2017: 東京大学, 先端科学技術研究センター, 特任助教 2013 – 2014: 東京大学, 先端科学技術研究センター, 助教
Review Section/Research Field	Except Principal Investigator Complex systems / Basic Section 38020:Applied microbiology-related / Biomolecular chemistry
Keywords	Except Principal Investigator 動的構造解析 / 構造解析 / ハイブリッドアプローチ / シミュレーション / タンパク質-膜間相互作用 / 可視紫外吸収スペクトル帰属 / プロトン化 / 電子状態 / 化学反応解析 / モデリング … More / 量子古典混合計算 / 分子動力学シミュレーション / 脂質膜 / タンパク質 / 構造モデリング / タンパク質ダイナミクス / シリアルフェムト秒結晶構造解析 / 蛋白質結晶構造解析 / X線溶液散乱 / X線結晶構造解析 / 動的構造 / 結晶構造解析 / 温度ジャンプ / 溶液散乱 / 時分割実験 / X線自由電子レーザー / コンピュータシミュレーション / 分子認識 / スプライシング / タンパク質相互作用 / ヒストン / 血管内皮細胞 / オルタナティブスプライシング / パターン認識受容体 / 自然免疫 / 細胞周期 / RNAプロセッシング / ペントラキシン / ヒストン障害 / 敗血症 Less

細菌由来排出膜輸送タンパク質についての評価系開発とカタログ化および高機能化
- Principal Investigator
  
  川崎寿
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 38020:Applied microbiology-related
- Research Institution
  The University of Tokyo
Unraveling Protein Chemical Reaction Dynamics through Molecular Simulations
- Principal Investigator
  
  Miyashita Osamu
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Institute of Physical and Chemical Research
Reaction initiation techniques in time-resolved experiments
- Principal Investigator
  
  Nango Eriko
- Project Period (FY)
  2019 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Tohoku University
  Institute of Physical and Chemical Research
Dynamics of Molecular Pattern Recognition in Protein Interaction
- Principal Investigator
  
  HAMAKUBO TAKAO
- Project Period (FY)
  2013 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  Biomolecular chemistry
- Research Institution
  The University of Tokyo

All 2024 2023 2022 2021 2020 2019

All Journal Article Presentation

[Journal Article] Mutational analysis in Corynebacterium stationis MFS transporters for improving nucleotide bioproduction2024
- Author(s)
  Kinose Keita、Shinoda Keiko、Konishi Tomoyuki、Kawasaki Hisashi
- Journal Title
  
  Applied Microbiology and Biotechnology
  
  Volume: 108:251 Issue: 1 Pages: 1-13
- DOI
  10.1007/s00253-024-13080-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05453
[Journal Article] Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations2024
- Author(s)
  Maeki Masatoshi、Kimura Niko、Okada Yuto、Shimizu Kazuki、Shibata Kana、Miyazaki Yusuke、Ishida Akihiko、Yonezawa Kento、Shimizu Nobutaka、Shinoda Wataru、Tokeshi Manabu
- Journal Title
  
  Nanoscale Advances
  
  Volume: ー Issue: 8 Pages: 2166-2176
- DOI
  10.1039/d3na01073b
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-19H05781, KAKENHI-PUBLICLY-23H04049, KAKENHI-PROJECT-23K21096, KAKENHI-PROJECT-23K28408
[Journal Article] Determining Factor of the Quantum Yield of the Cyclization Reaction via Triplet States for Dye-Attached Diarylethene2021
- Author(s)
  Shinoda Keiko、Yokojima Satoshi、Fukaminato Tuyoshi、Nakamura Shinichiro
- Journal Title
  
  The Journal of Physical Chemistry A
  
  Volume: 125 Issue: 27 Pages: 5895-5902
- DOI
  10.1021/acs.jpca.1c02912
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20H05453, KAKENHI-PROJECT-19H02692
[Journal Article] Engineered MATE multidrug transporters reveal two functionally distinct ion-coupling pathways in NorM from Vibrio cholerae2021
- Author(s)
  Raturi Sagar、Nair Asha V.、Shinoda Keiko、Singh Himansha、Bai Boyan、Murakami Satoshi、Fujitani Hideaki、van Veen Hendrik W.
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 1-17
- DOI
  10.1038/s42003-021-02081-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05453, KAKENHI-PROJECT-18K05396, KAKENHI-PROJECT-21H02412
[Journal Article] A New Lipid Force Field (FUJI)2020
- Author(s)
  Kamiya Nozomu、Kayanuma Megumi、Fujitani Hideaki、Shinoda Keiko
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: - Issue: 6 Pages: 3664-3676
- DOI
  10.1021/acs.jctc.9b01195
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-19H05781, KAKENHI-PLANNED-20H05453
[Presentation] 膜タンパク質の分子動力学シミュレーション：膜のタンパク質へ与える影響2024
- Author(s)
  篠田恵子
- Organizer
  生命システム原材料研究会
- Invited
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] Corynebacterium stationisの変異型MFSトランスポーターによるIMPの分泌型発酵生産2023
- Author(s)
  黄瀬啓太、小西智之、篠田恵子、川崎寿
- Organizer
  日本農芸化学会2023年度大会
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] MFSトランスポーターの高活性変異と基質排出機構2023
- Author(s)
  篠田恵子
- Organizer
  高速分子動画シンホシウム2023
- Invited
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] 大腸菌膜に埋め込まれた多剤排出トランスポーターAcrA-AcrB-AcrZ-TolC 複合体のMDシミュレーション2022
- Author(s)
  篠田恵子
- Organizer
  「富岳」成果創出加速プログラム　シンポジウム・研究交流会「富岳百景」
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] Molecular dynamics study of multidrug efflux transporter complex embedded in lipid bilayer: Role of membrane lipids in the transporter2022
- Author(s)
  Keiko Shinoda and Hisashi Kawasaki
- Organizer
  第60回日本生物物理学会
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] 分子シミュレーションを利用した膜蛋白質デザイン2022
- Author(s)
  川崎寿、篠田恵子、濱本晋
- Organizer
  バイオインダストリー協会「発酵と代謝研究会」講演会
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] 細胞膜脂肪酸組成が大腸菌の Na+/H+ アンチポーター活性に与える影響2022
- Author(s)
  堀一将，篠田恵子，浜本晋，氏原哲朗，川崎寿，富田武郎，西山真
- Organizer
  日本農芸化学会2022年度大会
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] 多剤排出トランスポーターMATEの分子動力学シミュレーション：イオンカップリング経路におけるカルボキシレートの役割2021
- Author(s)
  篠田恵子、川崎　寿
- Organizer
  第94回日本生化学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] MATEトランスポーターの分子動力学シミュレーション2021
- Author(s)
  篠田恵子
- Organizer
  第47回生体分子科学討論会
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] Involvement of conserved amino acids in ion transport pathways of multidrug and toxic compound extrusion (MATE) transporter2021
- Author(s)
  K. Shinoda, H. Kawasaki, S. Murakami, S. Raturi, A. V. Nair, H. Singh, B. Bai, H. W. van Veen
- Organizer
  第59回日本生物物理学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-20H05453
[Presentation] Molecular Dynamics Study of Multidrug Efflux Transporter AcrA-AcrB-AcrA-TolC Complex Embedded in Lipid Bilayer2020
- Author(s)
  Keiko Shinoda
- Organizer
  64th Annual Meeting of the Biophysical Society
- Data Source
  KAKENHI-PLANNED-19H05781
[Presentation] 多剤排出トランスポーターAcrABZ-TolCの分子動力学シミュレーション：膜-膜タンパク質間相互作用の評価2019
- Author(s)
  篠田恵子
- Organizer
  第33回分子シミュレーション討論会
- Data Source
  KAKENHI-PLANNED-19H05781
[Presentation] 多剤排出トランスポーター複合体AcrA-AcrB-AcrZ-TolCのMDシミュレーション2019
- Author(s)
  篠田恵子
- Organizer
  第14回トランスポーター研究会年会（2019）
- Data Source
  KAKENHI-PLANNED-19H05781

1. Miyashita Osamu (10620528)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. 庄司光男 (00593550)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
3. HAMAKUBO TAKAO (90198797)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. Fujitani Hideaki (50417151)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. Nagatoishi Satoru (30550248)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. Yamashita Takefumi (50615622)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. Nango Eriko (90376947)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 堀内恵子 (00456203)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 太期健二 (20466866)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 川村猛 (70306835)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 津本浩平 (90271866)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 岩成宏子 (20176556)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 清水伸隆 (20450934)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
14. 大和田成起 (90725962)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 川崎寿 (90349788)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

SHINODA KEIKO 篠田 恵子

篠田 恵子 シノダ ケイコ

Research Projects

Research Products

Co-Researchers

細菌由来排出膜輸送タンパク質についての評価系開発とカタログ化および高機能化

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Unraveling Protein Chemical Reaction Dynamics through Molecular Simulations

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Reaction initiation techniques in time-resolved experiments

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Dynamics of Molecular Pattern Recognition in Protein Interaction

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Mutational analysis in Corynebacterium stationis MFS transporters for improving nucleotide bioproduction2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Determining Factor of the Quantum Yield of the Cyclization Reaction via Triplet States for Dye-Attached Diarylethene2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Engineered MATE multidrug transporters reveal two functionally distinct ion-coupling pathways in NorM from Vibrio cholerae2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A New Lipid Force Field (FUJI)2020

Author(s)

Journal Title

DOI

Data Source

[Presentation] 膜タンパク質の分子動力学シミュレーション：膜のタンパク質へ与える影響2024

Author(s)

Organizer

Data Source

[Presentation] Corynebacterium stationisの変異型MFSトランスポーターによるIMPの分泌型発酵生産2023

Author(s)

Organizer

Data Source

[Presentation] MFSトランスポーターの高活性変異と基質排出機構2023

Author(s)

Organizer

Data Source

[Presentation] 大腸菌膜に埋め込まれた多剤排出トランスポーターAcrA-AcrB-AcrZ-TolC 複合体のMDシミュレーション2022

Author(s)

Organizer

Data Source

[Presentation] Molecular dynamics study of multidrug efflux transporter complex embedded in lipid bilayer: Role of membrane lipids in the transporter2022

Author(s)

Organizer

Data Source

[Presentation] 分子シミュレーションを利用した膜蛋白質デザイン2022

Author(s)

Organizer

Data Source

[Presentation] 細胞膜脂肪酸組成が大腸菌の Na+/H+ アンチポーター活性に与える影響2022

Author(s)

SHINODA KEIKO 篠田恵子

篠田恵子シノダケイコ