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Ai Muto  武藤 愛

ORCIDConnect your ORCID iD *help
Researcher Number 80730506
Other IDs
Affiliation (based on the past Project Information) *help 2023 – 2024: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 学振特別研究員RPD
2021 – 2022: 国立研究開発法人理化学研究所, 生命機能科学研究センター, 訪問研究員
2017 – 2020: 奈良先端科学技術大学院大学, データ駆動型サイエンス創造センター, 助教
Review Section/Research Field
Principal Investigator
Basic Section 43060:System genome science-related / Biofunction/Bioprocess
Except Principal Investigator
Basic Section 61030:Intelligent informatics-related
Keywords
Principal Investigator
接合伝達 / 大腸菌遺伝子欠失株ライブラリ / bar-seq / 網羅的遺伝子欠失株ライブラリ / 大腸菌 / 薬剤耐性 / バイオテクノロジー / 酵素 / 応用微生物 / 細菌 … More / ゲノム / バイオインフォマティクス / 遺伝子欠失株ライブラリ / システム生物学 / 新規代謝経路 / 代謝パスウェイ / 代謝経路 / 遺伝的相互作用 / 合成致死 … More
Except Principal Investigator
生育結合 / 流束均衡解析 / 増殖連動型生産 / 線形計画問題 / 遺伝子削除問題 / 反応削除問題 / 制約モデル / ゲノムスケールモデル / 遺伝子削除 / 微生物 / GPRルール / 遺伝子削除戦略 / 代謝ネットワーク設計 / ゲノムスケール代謝モデル / 混合整数線形計画法 / アルゴリズム / 増殖連動生産 / 有用物質生産 / 代謝ネットワーク Less
  • Research Projects

    (4 results)
  • Research Products

    (14 results)
  • Co-Researchers

    (3 People)
  •  薬剤持続性を介した大腸菌薬剤耐性獲得進化の定量的観察と耐性化抑制変異の探索Principal Investigator

    • Principal Investigator
      武藤 愛
    • Project Period (FY)
      2024 – 2028
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Institute of Physical and Chemical Research
  •  Screening drug resistance suppression targets through comprehensive construction of E. coli double knockout strainsPrincipal Investigator

    • Principal Investigator
      Muto Ai
    • Project Period (FY)
      2020 – 2023
    • Research Category
      Grant-in-Aid for Early-Career Scientists
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Institute of Physical and Chemical Research
      Nara Institute of Science and Technology
  •  Algorithms for metabolic network design for efficient production of valuable substances

    • Principal Investigator
      田村 武幸
    • Project Period (FY)
      2020 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 61030:Intelligent informatics-related
    • Research Institution
      Kyoto University
  •  Theoretical re-construction of metabolic pathways by comprehensive genetic interaction analysisPrincipal Investigator

    • Principal Investigator
      Ai Muto
    • Project Period (FY)
      2017 – 2022
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Biofunction/Bioprocess
    • Research Institution
      Institute of Physical and Chemical Research
      Nara Institute of Science and Technology

All 2023 2022 2021 2020 2019 2018 2017

All Journal Article Presentation

  • [Journal Article] Gene Deletion Algorithms for Minimum Reaction Network Design by Mixed-Integer Linear Programming for Metabolite Production in Constraint-Based Models: gDel_minRN2023

    • Author(s)
      Tamura Takeyuki、Muto-fujita Ai、Tohsato Yukako、Kosaka Tomoyuki
    • Journal Title

      Journal of Computational Biology

      Volume: 30 Issue: 5 Pages: 553-568

    • DOI

      10.1089/cmb.2022.0352

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23K20386
  • [Journal Article] Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer2020

    • Author(s)
      S Fujiyoshi, A Muto-Fujita, F Maruyama
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 12580-12580

    • DOI

      10.1038/s41598-020-69450-9

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K17885, KAKENHI-PROJECT-20K18903
  • [Presentation] Evolution of Metabolic Networks Explored by Chemical Reaction Modules2022

    • Author(s)
      Ai Muto-Fujita
    • Organizer
      日本微生物生態学会 第35回大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] 『実験自動化 x 遺伝子欠失株ライブラリ』で目指す新規代謝ネットワークの探索2021

    • Author(s)
      武藤 愛
    • Organizer
      2021年日本バイオインフォマティクス学会年会・第10回生命医薬情報学連合大会(IIBMP2021)
    • Invited
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] Gene deletion algorithms for minimum reaction network design by mixed-integer linear programming for metabolite production in constraint-based models: gDel_minRN2021

    • Author(s)
      Takeyuki Tamura, Ai Muto-Fujita, Yukako Tohsato and Tomoyuki Kosaka
    • Organizer
      第10回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-23K20386
  • [Presentation] 大腸菌の網羅的二重欠失株生育実験データに基づく代謝ネットワークモデルの補完2020

    • Author(s)
      武藤 愛
    • Organizer
      2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(iibmp2020)
    • Invited
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] 大腸菌の網羅的二重欠失株生育実験データに基づく代謝ネットワークモデルの補完2020

    • Author(s)
      武藤愛
    • Organizer
      第9回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-23K20386
  • [Presentation] Rewiring diagram of Escherichia coli metabolic network models by Genome-scale genetic interaction analysis2019

    • Author(s)
      Ai Muto-Fujita, Jonathan Monk, Yuichiro Tanaka, Bernhard O Palsson and Hirotada Mori.
    • Organizer
      2019年日本バイオインフォマティクス学会年会・第8回生命医薬情報学連合大会(IIBMP2019)
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] Comprehensive Analysis of Genetic Interactions in E.coli2019

    • Author(s)
      Ai Muto-Fujita
    • Organizer
      Annual Meeting of Systems and Synthetic Bacteriology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] 化学反応モジュールから探る代謝ネットワークの進化2019

    • Author(s)
      武藤愛
    • Organizer
      CBI学会2019年大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] Genome-scale genetic interaction analysis to rewire comprehensive metabolic models of Escherichia coli2019

    • Author(s)
      Ai Muto-Fujita, Jonathan Monk, Yuichiro Tanaka, Bernhard O Palsson and Hirotada Mori.
    • Organizer
      ISMB/ECCB 2019
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] 大腸菌合成致死遺伝子の網羅的検出による未知代替経路の探索2018

    • Author(s)
      武藤愛、田中雄一郎、野﨑麻希、森浩禎
    • Organizer
      第91回日本生化学会大会
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] 分子バーコードを用いた大腸菌遺伝子欠失株混合培養時の集団動態の検出2017

    • Author(s)
      Nurhezreen Md Iqbal, 蓮實 紗弥, 石黒 宗, 山本-エヴァンス 楠, 森 秀人, 武藤愛, 谷内江 望 and 森 浩禎
    • Organizer
      NGS現場の会 第五回研究会
    • Data Source
      KAKENHI-PROJECT-17K17885
  • [Presentation] Towards the discovery of unknown metabolic pathways in E.coli -An application of comprehensive genetic interaction analysis-2017

    • Author(s)
      Ai Muto-Fujita, Yuichiro Tanaka, Jonathan Monk, Bernhard O. Palsson and Hirotada Mori
    • Organizer
      From Genetic Networks to a Cellular Wiring Diagram
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K17885
  • 1.  田村 武幸 (00437261)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 2.  高坂 智之 (70500453)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 3.  遠里 由佳子 (80346171)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results

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