Shimizu Yoshihiro 清水義宏

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SHIMIZU Yoshihiro 清水義宏

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Researcher Number	90401231
Other IDs	https://orcid.org/0000-0003-3499-1394
Affiliation (Current)	2024: 国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー
Affiliation (based on the past Project Information) *help	2020 – 2024: 国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー 2018: 国立研究開発法人理化学研究所, 生命機能科学研究センター, ユニットリーダー 2015 – 2017: 国立研究開発法人理化学研究所, 生命システム研究センター, ユニットリーダー 2014: 独立行政法人理化学研究所, 生命システム研究センター, ユニットリーダー 2007 – 2009: The University of Tokyo, 大学院・新領域創成科学研究科, 助教 2008: The University of Tokyo, 大学院新領域創成科学研究科, 助教
Review Section/Research Field	Principal Investigator System genome science / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Biological Sciences / Science and Engineering / Molecular biology Except Principal Investigator Transformative Research Areas, Section (II) / Medium-sized Section 61:Human informatics and related fields / Broad Section J / Basic Section 50020:Tumor diagnostics and therapeutics-related / Bio-related chemistry / Living organism molecular science
Keywords	Principal Investigator リボソーム / 無細胞タンパク質合成 / tRNA / 翻訳 / 無細胞タンパク質合成システム / プロテオーム / オミクス解析 / 質量分析 / プロテオミクス解析 / 脳梗塞 … More / 次世代シーケンス解析 / 蛋白質 / 生体分子 / マイクロ流路 / 次世代シーケンサー / mRNA / Synthetic biology / キロマイシン / SmpB / tmRNA / トランストランスレーション / 生体高分子構造・機能 … More Except Principal Investigator 電子-分子インタフェイス / 大量生産 / 自己複製 / 人工細胞 / オートマター / 質量分析 / 極限環境生命圏 / 初期生命進化 / CO代謝微生物 / 蛇紋岩化反応サイト / CO微生物 / 合成生物学 / オミックス解析 / CO2シープ / 蛇紋岩化反応 / 極限環境 / メタトランスクリプトーム / メタゲノム / 分子ロボティクス / 人工多細胞 / 1細胞質量分析 / 薬理薬効 / 抗体医薬 / ADC / 分子イメージング / 抗体 / ドラッグデリバリー / プロテオミクス / プロテオーム / トリッガーファクター / 翻訳後修飾 / GroEL / フォールデング / 生体外蛋白質合成系 / 膜蛋白質 / 分泌蛋白質 / フォールディング / シャペロン / リボソーム / 無細胞蛋白質合成系 Less

Biology of CO world
- Principal Investigator
  
  鈴木志野
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (II)
- Research Institution
  Institute of Physical and Chemical Research
  Japan Aerospace EXploration Agency
Development of a method for determining celebral infarction sites by serum omics analysisPrincipal Investigator
- Principal Investigator
  
  清水義宏
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Institute of Physical and Chemical Research
AutoMatter: Toward creation and expansion of programmable micro-active matter
- Principal Investigator
  
  野村慎一郎
- Project Period (FY)
  2020 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section J
- Research Institution
  Tohoku University
Creation and development of programmable dynamic microparticles "auto-matter"
- Principal Investigator
  
  野村慎一郎
- Project Period (FY)
  2020
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 61:Human informatics and related fields
- Research Institution
  Tohoku University
Creating a pharmacological evaluation system using a highly sensitive single cell ESI-MS analysis for the development of innovative new drugs.
- Principal Investigator
  
  Yasunaga Masahiro
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 50020:Tumor diagnostics and therapeutics-related
- Research Institution
  National Cancer Center Japan
Elucidation of higher-order structure of central dogma process by specific and extensive analyses of translational template nucleic acidsPrincipal Investigator
- Principal Investigator
  
  清水義宏
- Project Period (FY)
  2017 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Institute of Physical and Chemical Research
Proteome analysis for low abundant ptoteins
- Principal Investigator
  
  Matsumoto Katsuhiko
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Bio-related chemistry
- Research Institution
  Institute of Physical and Chemical Research
State analyses of a cell-free protein synthesis system using ribosome profilingPrincipal Investigator
- Principal Investigator
  
  Shimizu Yoshihiro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  System genome science
- Research Institution
  Institute of Physical and Chemical Research
Development of the self-replicable cell-free protein synthesis systemPrincipal Investigator
- Principal Investigator
  
  Shimizu Yoshihiro
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  System genome science
- Research Institution
  Institute of Physical and Chemical Research
人工細胞モデル構築のための基盤技術としての無細胞タンパク質合成システムの構築Principal Investigator
- Principal Investigator
  
  清水義宏
- Project Period (FY)
  2008 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
Investigation of the ribosome dynamics generated by trans-translation specific SmpB proteinPrincipal Investigator
- Principal Investigator
  
  SHIMIZU Yoshihiro
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Molecular biology
- Research Institution
  The University of Tokyo
Reconstitution of cell-free protein maturation system coupled with translation system.
- Principal Investigator
  
  UEDA Takuya
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Living organism molecular science
- Research Institution
  The University of Tokyo

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All Journal Article Presentation Book

[Book] RNA実験ノート上巻2008
- Author(s)
  清水義宏、上田卓也
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-19770143
[Book] RNA実験ノート上「大腸菌由来酵素・因子群を用いた翻訳」2008
- Author(s)
  清水義宏
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-19770143
[Book] The PURE System:A Minimal Cell-Free Translation System. In Kudlick, W., Katzen, F. and Bennett, R.(eds.), Cell-Free Protein Expression2007
- Author(s)
  Ying, B.W., Shimizu, Y. and Ueda, T.
- Publisher
  (2007).Landes Bioscience,Austin
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Scalable Synthesis of Planar Macroscopic Lipid-Based Multi-Compartment Structures2023
- Author(s)
  Archer Richard J.、Hamada Shogo、Shimizu Ryo、Nomura Shin-Ichiro M.
- Journal Title
  
  Langmuir
  
  Volume: 39 Issue: 14 Pages: 4863-4871
- DOI
  10.1021/acs.langmuir.2c02859
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K12239, KAKENHI-PLANNED-20H05969, KAKENHI-PLANNED-20H05970, KAKENHI-PUBLICLY-22H05396, KAKENHI-PROJECT-20H05701, KAKENHI-PROJECT-20H00619
[Journal Article] Ebola virus-like particles reprogram cellular metabolism2023
- Author(s)
  Tang Huaqi、Abouleila Yasmine、Saris Anno、Shimizu Yoshihiro、Ottenhoff Tom H. M.、Mashaghi Alireza
- Journal Title
  
  Journal of Molecular Medicine
  
  Volume: 101 Issue: 5 Pages: 557-568
- DOI
  10.1007/s00109-023-02309-4
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K19280, KAKENHI-PROJECT-20H05701
[Journal Article] A large‐scale targeted proteomics of plasma extracellular vesicles shows utility for prognosis prediction subtyping in colorectal cancer2022
- Author(s)
  Kasahara Keiko、Narumi Ryohei、Nagayama Satoshi、Masuda Keiko、Esaki Tsuyoshi、Obama Kazutaka、Tomonaga Takeshi、Sakai Yoshiharu、Shimizu Yoshihiro、Adachi Jun
- Journal Title
  
  Cancer Medicine
  
  Volume: 12 Issue: 6 Pages: 7616-7626
- DOI
  10.1002/cam4.5442
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K19280, KAKENHI-PROJECT-20H05701, KAKENHI-PROJECT-21K20835
[Journal Article] Capillary microsampling-based single-cell metabolomics by mass spectrometry and its applications in medicine and drug discovery2022
- Author(s)
  Abouleila Yasmine、Ali Ahmed、Masuda Keiko、Mashaghi Alireza、Shimizu Yoshihiro
- Journal Title
  
  Cancer Biomarkers
  
  Volume: 33 Issue: 4 Pages: 437-447
- DOI
  10.3233/cbm-210184
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Spontaneous and Driven Growth of Multicellular Lipid Compartments to Millimeter Size from Porous Polymer Structures2022
- Author(s)
  Shin-ichiro M. Nomura, Ryo Shimizu, Richard James Archer, Gen Hayase, Taro Toyota, Richard Mayne, Andrew Adamatzky
- Journal Title
  
  ChemSystemsChem
  
  Volume: 4(5) Issue: 5
- DOI
  10.1002/syst.202200006
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-20H05968, KAKENHI-PLANNED-20H05969, KAKENHI-PLANNED-20H05970, KAKENHI-PROJECT-20H05701, KAKENHI-PROJECT-20H00619
[Journal Article] A red light?responsive photoswitch for deep tissue optogenetics2022
- Author(s)
  Kuwasaki Yuto、Suzuki Kazushi、Yu Gaigai、Yamamoto Shota、Otabe Takahiro、Kakihara Yuki、Nishiwaki Michiru、Miyake Keita、Fushimi Keiji、Bekdash Ramsey、Shimizu Yoshihiro、Narikawa Rei、Nakajima Takahiro、Yazawa Masayuki、Sato Moritoshi
- Journal Title
  
  Nature Biotechnology
  
  Volume: 40 Issue: 11 Pages: 1672-1679
- DOI
  10.1038/s41587-022-01351-w
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K14705, KAKENHI-PROJECT-20H05701
[Journal Article] Transfer RNA Synthesis-Coupled Translation and DNA Replication in a Reconstituted Transcription/Translation System2022
- Author(s)
  Miyachi Ryota、Shimizu Yoshihiro、Ichihashi Norikazu
- Journal Title
  
  ACS Synthetic Biology
  
  Volume: 11 Issue: 8 Pages: 2791-2799
- DOI
  10.1021/acssynbio.2c00163
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Efficient and Precise Protein Synthesis in a Cell-Free System Using a Set of In Vitro Transcribed tRNAs with Nucleotide Modifications2022
- Author(s)
  Amikura Kazuaki、Hibi Keita、Shimizu Yoshihiro
- Journal Title
  
  Methods in Molecular Biology, Cell-Free Gene Expression
  
  Volume: 2433 Pages: 151-168
- DOI
  10.1007/978-1-0716-1998-8_9
- ISBN
  9781071619971, 9781071619988
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] ePURE_JSBML: A Tool for Constructing a Deterministic Model of a Reconstituted Escherichia coli Protein Translation System with a User‐Specified Nucleic Acid Sequence2022
- Author(s)
  Shimizu Yoshihiro、Tanimura Naoki、Matsuura Tomoaki
- Journal Title
  
  Advanced Biology
  
  Volume: 7 Issue: 3 Pages: 2200177-2200177
- DOI
  10.1002/adbi.202200177
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Cell-Free Synthesis of Human Endothelin Receptors and Its Application to Ribosome Display2022
- Author(s)
  Nakai Hiroki、Isshiki Kinuka、Hattori Masato、Maehira Hiromasa、Yamaguchi Tatsumi、Masuda Keiko、Shimizu Yoshihiro、Watanabe Takayoshi、Hohsaka Takahiro、Shihoya Wataru、Nureki Osamu、Kato Yasuhiko、Watanabe Hajime、Matsuura Tomoaki
- Journal Title
  
  Analytical Chemistry
  
  Volume: 94 Issue: 9 Pages: 3831-3839
- DOI
  10.1021/acs.analchem.1c04714
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-19H05423, KAKENHI-PUBLICLY-20H04923, KAKENHI-PROJECT-17H00888, KAKENHI-PROJECT-20H05701, KAKENHI-PROJECT-21K19298, KAKENHI-PROJECT-19KK0178, KAKENHI-PLANNED-21H05228, KAKENHI-PROJECT-21H05037
[Journal Article] Versatile and multiplexed mass spectrometry-based absolute quantification with cell-free-synthesized internal standard peptides2022
- Author(s)
  Masuda Keiko、Kasahara Keiko、Narumi Ryohei、Shimojo Masaru、Shimizu Yoshihiro
- Journal Title
  
  Journal of Proteomics
  
  Volume: 251 Pages: 104393-104393
- DOI
  10.1016/j.jprot.2021.104393
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] <i>In vitro</i> reconstitution of the <i>Escherichia coli</i> 70S ribosome with a full set of recombinant ribosomal proteins2021
- Author(s)
  Aoyama Ryo、Masuda Keiko、Shimojo Masaru、Kanamori Takashi、Ueda Takuya、Shimizu Yoshihiro
- Journal Title
  
  The Journal of Biochemistry
  
  Volume: 171 Issue: 2 Pages: 227-237
- DOI
  10.1093/jb/mvab121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Direct infusion nano-electrospray ionization mass spectrometry for therapeutic drug monitoring of ciprofloxacin and its metabolites in human saliva2021
- Author(s)
  Demeiry Menna El、Ali Ahmed、Abouleila Yasmine、Zarad Walaa、El-Gendy Heba、Salam Randa Abdel、Hadad Ghada、Shimizu Yoshihiro、Masujima Tsutomu、Emara Samy
- Journal Title
  
  Journal of Pharmaceutical and Biomedical Analysis
  
  Volume: 195 Pages: 113866-113866
- DOI
  10.1016/j.jpba.2020.113866
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Antisense Oligonucleotide Modified with Disulfide Units Induces Efficient Exon Skipping in mdx Myotubes through Enhanced Membrane Permeability and Nucleus Internalization2021
- Author(s)
  Haruka Hiraoka, Zhaoma Shu, Bao Tri Le, Keiko Masuda, Kosuke Nakamoto, Lyu Fangjie, Naoko Abe, Fumitaka Hashiya, Yasuaki Kimura, Yoshihiro Shimizu, Rakesh N Veedu, Hiroshi Abe
- Journal Title
  
  ChemBioChem
  
  Volume: 22(24) Issue: 24 Pages: 3437-3442
- DOI
  10.1002/cbic.202100413
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K22704, KAKENHI-PROJECT-20H05701, KAKENHI-PROJECT-21K14750, KAKENHI-PROJECT-21K14751
[Journal Article] Boundary-Free Ribosome Compartmentalization by Gene Expression on a Surface2021
- Author(s)
  Levy Michael、Falkovich Reuven、Vonshak Ohad、Bracha Dan、Tayar Alexandra M.、Shimizu Yoshihiro、Daube Shirley S.、Bar-Ziv Roy H.
- Journal Title
  
  ACS Synthetic Biology
  
  Volume: 10 Issue: 3 Pages: 609-619
- DOI
  10.1021/acssynbio.0c00613
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H05701
[Journal Article] Single-Cell Screening of Tamoxifen Abundance and Effect Using Mass Spectrometry and Raman-Spectroscopy2019
- Author(s)
  Ali Ahmed、Abouleila Yasmine、Shimizu Yoshihiro、Hiyama Eiso、Watanabe Tomonobu M.、Yanagida Toshio、Germond Arno
- Journal Title
  
  Analytical Chemistry
  
  Volume: 91 Issue: 4 Pages: 2710-2718
- DOI
  10.1021/acs.analchem.8b04393
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PLANNED-18H05409, KAKENHI-PROJECT-19H01056
[Journal Article] High-resolution crystal structure of peptidyl-tRNA hydrolase from Thermus thermophiles2019
- Author(s)
  Matsumoto A., Uehara Y., Shimizu Y., Ueda T., Uchiumi T., Ito K.
- Journal Title
  
  Proteins
  
  Volume: 87 Issue: 3 Pages: 226-235
- DOI
  10.1002/prot.25643
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18K06080, KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-16H04741, KAKENHI-PROJECT-16H02089, KAKENHI-PROJECT-19H03155
[Journal Article] Live single cell mass spectrometry reveals cancer‐specific metabolic profiles of circulating tumor cells2019
- Author(s)
  Abouleila Yasmine、Onidani Kaoru、Ali Ahmed、Shoji Hirokazu、Kawai Takayuki、Lim Chwee Teck、Kumar Vipin、Okaya Shinobu、Kato Ken、Hiyama Eiso、Yanagida Toshio、Masujima Tsutomu、Shimizu Yoshihiro、Honda Kazufumi
- Journal Title
  
  Cancer Science
  
  Volume: 110 Issue: 2 Pages: 697-706
- DOI
  10.1111/cas.13915
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-16K19381, KAKENHI-PROJECT-16H02778, KAKENHI-PROJECT-16H05547, KAKENHI-PROJECT-19H01056
[Journal Article] Phosphorogenic and spontaneous formation of tris(bipyridine)ruthenium in peptide scaffolds2019
- Author(s)
  Karimiavargani Marziyeh、Tada Seiichi、Minagawa Noriko、Shimizu Yoshihiro、Hirose Takuji、Ito Yoshihiro、Uzawa Takanori
- Journal Title
  
  Journal of Peptide Science
  
  Volume: 25 Issue: 4
- DOI
  10.1002/psc.3158
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-17K07232
[Journal Article] Quantitative Characterization of Translational Riboregulators Using an in Vitro Transcription?Translation System2018
- Author(s)
  Senoussi Anis、Lee Tin Wah Jonathan、Shimizu Yoshihiro、Robert J?r?me、Jaramillo Alfonso、Findeiss Sven、Axmann Ilka M.、Estevez-Torres Andr?
- Journal Title
  
  ACS Synthetic Biology
  
  Volume: 7 Issue: 5 Pages: 1269-1278
- DOI
  10.1021/acssynbio.7b00387
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Journal Article] Robustness of a Reconstituted Escherichia coli Protein Translation System Analyzed by Computational Modeling2018
- Author(s)
  Matsuura Tomoaki、Hosoda Kazufumi、Shimizu Yoshihiro
- Journal Title
  
  ACS Synthetic Biology
  
  Volume: 7 Issue: 8 Pages: 1964-1972
- DOI
  10.1021/acssynbio.8b00228
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-17H00888
[Journal Article] Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics2018
- Author(s)
  Narumi Ryohei、Masuda Keiko、Tomonaga Takeshi、Adachi Jun、Ueda Hiroki R.、Shimizu Yoshihiro
- Journal Title
  
  Synthetic and Systems Biotechnology
  
  Volume: 3 Issue: 2 Pages: 97-104
- DOI
  10.1016/j.synbio.2018.02.004
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-16H04707
[Journal Article] G-Protein Coupled Receptor Protein Synthesis on a Lipid Bilayer Using a Reconstituted Cell-Free Protein Synthesis System2018
- Author(s)
  Gessesse Belay、Nagaike Takashi、Nagata Koji、Shimizu Yoshihiro、Ueda Takuya
- Journal Title
  
  Life
  
  Volume: 8 Issue: 4 Pages: 54-54
- DOI
  10.3390/life8040054
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-16H02089
[Journal Article] A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing2018
- Author(s)
  Murakami Tatsuya C.、Mano Tomoyuki、Saikawa Shu、Horiguchi Shuhei A.、Shigeta Daichi、Baba Kousuke、Sekiya Hiroshi、Shimizu Yoshihiro、Tanaka Kenji F.、Kiyonari Hiroshi、Iino Masamitsu、Mochizuki Hideki、Tainaka Kazuki、Ueda Hiroki R.
- Journal Title
  
  Nat Neurosci
  
  Volume: 21 Issue: 4 Pages: 627-637
- DOI
  10.1038/s41593-018-0109-1
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-16H01621, KAKENHI-PUBLICLY-17H05688, KAKENHI-PUBLICLY-17H05700, KAKENHI-PLANNED-25117002, KAKENHI-PROJECT-25221004, KAKENHI-PROJECT-15H03123, KAKENHI-PROJECT-16K15124, KAKENHI-PROJECT-18K14915, KAKENHI-PUBLICLY-17H05680, KAKENHI-PUBLICLY-17H06062, KAKENHI-PROJECT-16J05041, KAKENHI-PROJECT-25221304
[Journal Article] Reconstitution of 30S ribosomal subunits in vitro using ribosome biogenesis factors2018
- Author(s)
  Tamaru Daichi、Amikura Kazuaki、Shimizu Yoshihiro、Nierhaus Knud H.、Ueda Takuya
- Journal Title
  
  RNA
  
  Volume: 24 Issue: 11 Pages: 1512-1519
- DOI
  10.1261/rna.065615.118
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680, KAKENHI-PROJECT-16H02089
[Journal Article] 人工細胞と無細胞タンパク質合成システム.2017
- Author(s)
  安達仁朗, 清水義宏
- Journal Title
  
  人工細胞の創製とその応用 (シーエムシー出版植田充美監修)
  
  Volume: not applicable Pages: 8-14
- Data Source
  KAKENHI-PROJECT-26710014
[Journal Article] Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling2017
- Author(s)
  Matsuura, T., Tanimura, N., Hosoda, K., Yomo, T., and Shimizu, Y.
- Journal Title
  
  Proc Natl Acad Sci U S A
  
  Volume: 114 Issue: 8
- DOI
  10.1073/pnas.1615351114
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-16H00767, KAKENHI-PROJECT-26710014, KAKENHI-PROJECT-26640134
[Journal Article] Protein Absolute Quantification Using Cell-Free-Synthesized Peptide2017
- Author(s)
  Ryohei Narumi, Yoshihiro Shimizu, Hiroki R. Ueda
- Journal Title
  
  Proteome Letters
  
  Volume: 2 Pages: 75-82
- NAID
  130006743386
- Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Journal Article] 人工細胞と無細胞タンパク質合成システム.2017
- Author(s)
  安達仁朗, 清水義宏
- Journal Title
  
  人工細胞の創製とその応用 (シーエムシー出版植田充美監修)
  
  Volume: not applicable Pages: 8-14
- Data Source
  KAKENHI-PROJECT-26640134
[Journal Article] Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.2016
- Author(s)
  Sunagawa GA, Sumiyama K, Ukai-Tadenuma M, Perrin D, Fujishima H, Ukai H, Nishimura O, Shi S, Ohno R, Narumi R, Shimizu Y, Tone D, Ode KL, Kuraku S, Ueda HR.
- Journal Title
  
  Cell Rep.
  
  Volume: 14 Issue: 3 Pages: 662-677
- DOI
  10.1016/j.celrep.2015.12.052
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26640134, KAKENHI-PLANNED-23115006, KAKENHI-PUBLICLY-26113720, KAKENHI-PROJECT-25221004, KAKENHI-PROJECT-14J06417, KAKENHI-PROJECT-26870858, KAKENHI-PROJECT-26710014
[Journal Article] Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins.2016
- Author(s)
  Narumi R, Shimizu Y, Ukai-Tadenuma M, Ode KL, Kanda GN, Shinohara Y, Sato A, Matsumoto K, Ueda HR.
- Journal Title
  
  Proc. Natl. Acad. Sci. USA
  
  Volume: 133 Issue: 24 Pages: 3461-3467
- DOI
  10.1073/pnas.1603799113
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-25221004, KAKENHI-PROJECT-26710014, KAKENHI-PROJECT-15K13750, KAKENHI-PROJECT-26640134
[Journal Article] Integration of a Reconstituted Cell-free Protein-synthesis System on a Glass Microchip2015
- Author(s)
  Tanaka, Y. and Shimizu, Y.
- Journal Title
  
  Anal. Sci.
  
  Volume: 31 Issue: 2 Pages: 67-71
- DOI
  10.2116/analsci.31.67
- NAID
  130004827457
- ISSN
  0910-6340, 1348-2246
- Language
  English
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26640134, KAKENHI-PROJECT-26710014
[Journal Article] 無細胞タンパク質合成システム2015
- Author(s)
  清水義宏、木賀大介
- Journal Title
  
  生物工学会誌
  
  Volume: 93 Pages: 603-606
- Data Source
  KAKENHI-PROJECT-26640134
[Journal Article] 無細胞タンパク質合成システム2015
- Author(s)
  清水義宏、木賀大介
- Journal Title
  
  生物工学会誌
  
  Volume: 93 Pages: 603-606
- Data Source
  KAKENHI-PROJECT-26710014
[Journal Article] 生命の部分再構成としてのPURE system2014
- Author(s)
  清水義宏
- Journal Title
  
  生体の科学
  
  Volume: 65 Pages: 498-499
- Data Source
  KAKENHI-PROJECT-26640134
[Journal Article] Biochemical aspects of bacterial strategies for handling the incomplete translation processes.2014
- Author(s)
  Shimizu, Y.
- Journal Title
  
  Front. Microbiol.
  
  Volume: 5 Pages: 170-170
- DOI
  10.3389/fmicb.2014.00170
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26640134, KAKENHI-PROJECT-26710014
[Journal Article] 生命の部分再構成としてのPURE system2014
- Author(s)
  清水義宏
- Journal Title
  
  生体の科学
  
  Volume: 65 Pages: 498-499
- Data Source
  KAKENHI-PROJECT-26710014
[Journal Article] Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.2014
- Author(s)
  Etsuo A. Susaki, Kazuki Tainaka, Dimitri Perrin, Fumiaki Kishino, Takehiro Tawara, Tomonobu M. Watanabe, Chihiro Yokoyama, Hirotaka Onoe, Megumi Eguchi, Shun Yamaguchi, Takaya Abe, Hiroshi Kiyonari, Yoshihiro Shimizu, Atsushi Miyawaki, Hideo Yokota, Hiroki R. Ueda
- Journal Title
  
  Cell
  
  Volume: 157 Issue: 3 Pages: 726-739
- DOI
  10.1016/j.cell.2014.03.042
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-23115006, KAKENHI-PROJECT-25221004, KAKENHI-PROJECT-25293254, KAKENHI-PROJECT-25560428, KAKENHI-PUBLICLY-26118517, KAKENHI-PROJECT-26280110, KAKENHI-PROJECT-26640134, KAKENHI-PROJECT-26710014
[Journal Article] Epitope mapping using ribosome display in a reconstituted cell-free protein synthesis system2009
- Author(s)
  Osada, E., Shimizu, Y.., Akbar, B. K., Kanamori, T., Ueda, T.
- Journal Title
  
  J Biochem 145
  
  Pages: 693-700
- NAID
  10025589286
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Real-time monitoring of cell-free translation on a quartz-crystal microbalance2009
- Author(s)
  Takahashi, S., Iida, M., Furusawa, H., Shimizu, Y.., Ueda, T., Okahata, Y.
- Journal Title
  
  Journal of the American Chemical Society 131
  
  Pages: 9326-9332
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Epitope mapping using ribosome display in reconstituted cell-free protein synthesis system2009
- Author(s)
  Eriko Osada, Yoshihiro Shimizu, Bintang K. Akbar, Takashi Kanamori, Takuya Ueda
- Journal Title
  
  J. Biochem 145
  
  Pages: 693-700
- NAID
  10025589286
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] 70S ribosomes bind to Shine-Dalgarno sequences without required dissociations2008
- Author(s)
  Shuntaro Takahashi, Ryoko Akita, Hisao Matsuno, Hiroyuki Furusawa, Yoshihiro Shimizu, Takuya Ueda, Yoshio Okahata
- Journal Title
  
  Chembiochem 9
  
  Pages: 870-873
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] 70 S ribosomes bind to Shine-Dalgarno sequences without required dissociations2008
- Author(s)
  Takahashi, S., Akita, R., Matsuno, H., Furusawa, H., Shimizu, Y.., Ueda, T., Okahata, Y.
- Journal Title
  
  Chembiochem 9
  
  Pages: 870-873
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Single-molecule imaging of full protein synthesis by immobilized ribosomes.2008
- Author(s)
  Uemura, S., Iizuka, R., Ueno, T., Shimizu, Y.., Taguchi, H., Ueda, T., Puglisi, J. D., Funatsu, T.
- Journal Title
  
  Nucleic Acids Res.
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Single-molecule imaging of full protein synthesis by immobilized ribosomes2008
- Author(s)
  Sotaro Uemura, Ryo Iizuka, Taro Ueno, Yoshihiro Shimizu, Hideki Taguchi, Takuya Ueda, Joseph D. Puglisi, Takashi Funatsu
- Journal Title
  
  Nucleic Acids Res 36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] Elongation factor Tu mutants expand amino acid tolerance of protein biosynthesis system2008
- Author(s)
  Yoshio Doi, Takashi Ohtsuki, Yoshihiro Shimizu, Takuya Ueda, Masahiko Sisido
- Journal Title
  
  J. Am. Chem. Soc 9
  
  Pages: 870-873
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] The PURE System : A Minimal Cell-Free Translation System In Kudlick, W., Katzen, F. Bennett, R. (eds.)2007
- Author(s)
  Ying, B.-W., Shimizu, Y., Ueda, T.
- Journal Title
  
  Cell-Free Protein Expression. Landes Bioscience
  
  Pages: 76-83
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Ribosomal Protein SI Is not Essential for the trans-translation Machinery2007
- Author(s)
  Qi, H., Shimizu, Y. and Ueda, T
- Journal Title
  
  J Mol Biol 368
  
  Pages: 845-852
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Ribosomal protein S1 is not essential for the trans-translation machinery2007
- Author(s)
  Hao Qi, Yoshihiro Shimizu, Takuya Ueda
- Journal Title
  
  J. Mol. Biol 368
  
  Pages: 845-852
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] Ribosomal Protein S1 Is not Essential for the trans-translation Machinery.2007
- Author(s)
  Qi, H., Shimizu, Y., Ueda, T.
- Journal Title
  
  J Mol Biol 368
  
  Pages: 845-852
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Efficient protein selection based on ribosome display system with purified components.2007
- Author(s)
  Ohashi, H., Shimizu, Y., Ying, B.W., Ueda, T.
- Journal Title
  
  Biochem Biophys Res Commun 352
  
  Pages: 270-276
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase2007
- Author(s)
  Kazunori Watanabe, Yukimatsu Toh, Kyoko Suto, Yoshihiro Shimizu, Natsuhisa Oka, Takeshi, Wada, Kozo Tomita
- Journal Title
  
  Nature 449
  
  Pages: 867-871
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19770143
[Journal Article] SmpB triggers GTP hydrolysis of elongation factor Tu on Ribosome's by compensating for the lack of codon-anticodon interaction during trans-translation initiation.2006
- Author(s)
  Shimizu, Y., Ueda, T.
- Journal Title
  
  J Biol Chem 281
  
  Pages: 15987-15996
- Data Source
  KAKENHI-PROJECT-18201040
[Journal Article] Cell-free translation systems for protein engineering.2006
- Author(s)
  Shimizu, Y., Kuruma, Y., Ying, B.W., Umekage, S., Ueda, T.
- Journal Title
  
  Febs J 273
  
  Pages: 4133-4140
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] 無細胞から迫る増える人工細胞2023
- Author(s)
  清水義宏
- Organizer
  第9回Yet Another Artificial-Cells研究会
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] Toward automated production of Multicellular Lipid Compartments2022
- Author(s)
  Ryo Shimizu, Richard Archer James, Gen Hayase, Satoshi Murata, Shinichiro M. Nomura
- Organizer
  第60回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] Toward automated production of Multi-cellular Lipid Compartments2022
- Author(s)
  Ryo Shimizu, Richard Archer James, Gen Hayase, Satoshi Murata, Shinichiro M. Nomura
- Organizer
  第6回分子ロボティクス年次大会
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] Towards full scratch engineering of a protein synthesis system2022
- Author(s)
  清水義宏
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] Automatter prototype: toward creating programmable artificial and autonomous molecular system2021
- Author(s)
  Nomura, S.-i. M., Takinoue, T., Shimizu, Y., Saito, H.
- Organizer
  PacifiChem2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] 遺伝子情報のみから翻訳システムを再構成する試み2020
- Author(s)
  清水義宏
- Organizer
  第93回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20H05701
[Presentation] Functional and structural analysis of cell-free synthesized membrane proteins2019
- Author(s)
  Belay Gessesse, Takuya Ueda, Yoshihiro Shimizu
- Organizer
  63rd Annual Meeting of the Biophysical Society
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 無細胞合成ペプチドを利用した定量プロテオミクスへの展開2018
- Author(s)
  清水義宏
- Organizer
  第5回Ribosome Meeting
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 生体膜上の生物化学における無細胞タンパク質合成システムの利用2018
- Author(s)
  清水義宏
- Organizer
  大阪大学蛋白質研究所セミナー　生体膜上の生物化学2018
- Invited
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] Interaction analysis of mRNA sequence and ribosome during translation initiation using next generation sequencer2018
- Author(s)
  Yoshihiro Shimizu
- Organizer
  International Symposium on "Proteins; from the Cradle to the Grave"
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 新規タンパク質定量法「MS-QBiC」による体内時刻の測定2017
- Author(s)
  清水義宏
- Organizer
  神戸ポートアイランド創薬フォーラム
- Place of Presentation
  神戸ポートアイランド
- Invited
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] 新規タンパク質定量法「MS-QBiC」による体内時刻の測定2017
- Author(s)
  清水義宏
- Organizer
  メディカルジャパン2017大阪
- Place of Presentation
  インテックス大阪
- Invited
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] Elucidation of higher-order stucture in central dogma pathways by large-scale analyses of mRNA sequences2017
- Author(s)
  Yoshihiro Shimizu
- Organizer
  International Symposium on Protein Quality Control
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 特定のtRNAを抜く　～　よりコントローラブルなPURE systemにむけて2017
- Author(s)
  佐藤文, 清水義宏
- Organizer
  第12回無細胞生命科学研究会
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] Synthetic and systems biological application of the PURE system2017
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Workshop on Cell-free synthetic biology of artificial cells
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 鋳型核酸の部位特異的大規模解析によるセントラルドグマが持つ高次性の解析2017
- Author(s)
  清水義宏
- Organizer
  新学術領域研究「新生鎖の生物学」平成29年度第一回班会議
- Data Source
  KAKENHI-PUBLICLY-17H05680
[Presentation] 新規タンパク質定量法「MS-QBiC」による体内時刻の測定2017
- Author(s)
  清水義宏
- Organizer
  メディカルジャパン2017大阪
- Place of Presentation
  インテックス大阪
- Invited
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 新規タンパク質定量法「MS-QBiC」による体内時刻の測定2017
- Author(s)
  清水義宏
- Organizer
  神戸ポートアイランド創薬フォーラム
- Place of Presentation
  神戸ポートアイランド
- Invited
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] タンパク質合成の再構成2016
- Author(s)
  清水義宏
- Organizer
  日本進化学会第18回大会ワークショップ
- Place of Presentation
  東京工業大学
- Invited
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] 再構成型無細胞タンパク質合成システムを利用した新規タンパク質定量法「MS-QBiC」による体内時刻の測定2016
- Author(s)
  清水義宏, 鳴海良平, 上田泰己
- Organizer
  第68回日本生物工学会大会
- Place of Presentation
  富山国際会議場
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] Body time detection by a novel protein quantification method using mass spectrometry and cell-free protein synthesis system.2016
- Author(s)
  Shimizu Y, Narumi R, Ueda HR
- Organizer
  QBiC Symposium 2016
- Place of Presentation
  千里ライフサイエンスセンター
- Year and Date
  2016-09-05
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016
- Author(s)
  清水義宏
- Organizer
  「細胞を創る」研究会9.0
- Place of Presentation
  早稲田大学
- Year and Date
  2016-11-21
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] タンパク質合成の再構成2016
- Author(s)
  清水義宏
- Organizer
  日本進化学会第18回大会ワークショップ
- Place of Presentation
  東京工業大学
- Invited
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016
- Author(s)
  清水義宏
- Organizer
  第11回無細胞生命科学研究会
- Place of Presentation
  岩手雫石　ゆこたんの森
- Year and Date
  2016-10-06
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] Body time detection by a novel protein quantification method using mass spectrometry and cell-free protein synthesis system.2016
- Author(s)
  Shimizu Y, Narumi R, Ueda HR
- Organizer
  QBiC Symposium 2016
- Place of Presentation
  千里ライフサイエンスセンター
- Year and Date
  2016-09-05
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 再構成型無細胞タンパク質合成システムを利用した新規タンパク質定量法「MS-QBiC」による体内時刻の測定2016
- Author(s)
  清水義宏, 鳴海良平, 上田泰己
- Organizer
  第68回日本生物工学会大会
- Place of Presentation
  富山国際会議場
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016
- Author(s)
  清水義宏
- Organizer
  第11回無細胞生命科学研究会
- Place of Presentation
  岩手雫石　ゆこたんの森
- Year and Date
  2016-10-06
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] 次世代シーケンサーを用いたmRNA 配列とリボソームの相互作用解析2016
- Author(s)
  清水義宏
- Organizer
  「細胞を創る」研究会9.0
- Place of Presentation
  早稲田大学
- Year and Date
  2016-11-21
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] Systems biological approaches for the E. coli translation system2015
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Workshop in 13th European Conference on Artificial Life
- Place of Presentation
  York Univ, UK
- Year and Date
  2015-07-21
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] 次世代シーケンサーを用いたmRNA配列とリボソームの相互作用解析2015
- Author(s)
  清水義宏
- Organizer
  第10回無細胞生命科学研究会
- Place of Presentation
  理化学研究所横浜キャンパス（神奈川県横浜市）
- Year and Date
  2015-10-13
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 次世代シーケンサーを用いたmRNA配列とリボソームの相互作用解析2015
- Author(s)
  清水義宏
- Organizer
  第10回無細胞生命科学研究会
- Place of Presentation
  理化学研究所横浜キャンパス
- Year and Date
  2015-10-13
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] Systems biological approaches for the E. coli translation system2015
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Workshop in 13th European Conference on Artificial Life
- Place of Presentation
  York (UK)
- Year and Date
  2015-07-21
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 全成分タンパク質合成反応モデルの構築とこれを用いた反応ダイナミクス解析2015
- Author(s)
  松浦友亮、清水義宏、細田一史、谷村直樹、四方哲也
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学（石川県金沢市）
- Year and Date
  2015-09-14
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 全成分タンパク質合成反応モデルの構築とこれを用いた反応ダイナミクス解析2015
- Author(s)
  松浦友亮、清水義宏、細田一史、谷村直樹、四方哲也
- Organizer
  第53回日本生物物理学会年会
- Place of Presentation
  金沢大学
- Year and Date
  2015-09-14
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] PURE systemによるペプチド合成を利用したマウス時計タンパク質の絶対定量2014
- Author(s)
  鳴海良平, 清水義宏, 上田泰己
- Organizer
  第9回無細胞生命科学研究会
- Place of Presentation
  大阪大学
- Year and Date
  2014-10-09
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] Reconstitution of a translation system from molecular parts.2014
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Development and future of artificial cells: Computation, fluctuation, and evolution.
- Place of Presentation
  京都大学
- Year and Date
  2014-06-10
- Invited
- Data Source
  KAKENHI-PROJECT-26710014
[Presentation] PURE systemによるペプチド合成を利用したマウス時計タンパク質の絶対定量2014
- Author(s)
  鳴海良平, 清水義宏, 上田泰己
- Organizer
  第9回無細胞生命科学研究会
- Place of Presentation
  大阪大学
- Year and Date
  2014-10-09
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] Reconstitution of a translation system from molecular parts.2014
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Development an future of artificial cells: Comutation, fluctuation, and evolution.
- Place of Presentation
  京都大学
- Year and Date
  2014-06-10
- Invited
- Data Source
  KAKENHI-PROJECT-26640134
[Presentation] 無細胞蛋白質合成系における30Sリボソームサブユニットの再構成2009
- Author(s)
  田丸大知, 清水義宏, 上田卓也
- Organizer
  第3回無細胞生命科学研究会弘前大学創立50周年
- Place of Presentation
  記念会館みちのくホール
- Year and Date
  2009-03-16
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] Reconstitution of tRNA in a cell-free protein synthesis system2008
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Synthetic Biology 4.0
- Place of Presentation
  Hong Kong, China
- Year and Date
  2008-10-10
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] Reconstitution of tRNA in a cell-free protein synthesis system2008
- Author(s)
  清水義宏
- Organizer
  第17回理研CDBミーティング
- Place of Presentation
  神戸
- Year and Date
  2008-10-14
- Data Source
  KAKENHI-PROJECT-20034009
[Presentation] Reconstitution of tRNA in a cell-free protein synthesis system2008
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Synthetic Biology4.0
- Place of Presentation
  香港
- Year and Date
  2008-10-10
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] Reconstitution of tRNA in a cell-free protein synthesis system2008
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Synthetic Biology 4.0
- Place of Presentation
  Hong Kong, China
- Year and Date
  2008-10-10
- Data Source
  KAKENHI-PROJECT-20034009
[Presentation] 無細胞蛋白質合成系における3OSリボソームサブユニットの再構成2008
- Author(s)
  田丸大知, 清水義宏, 上田卓也
- Organizer
  「細胞を創る」研究会1.0
- Place of Presentation
  大阪大学吹田キャンパス銀杏会館
- Year and Date
  2008-10-16
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] 無細胞蛋白質合成系における30Sリボソームサブユニットの再構成2008
- Author(s)
  田丸大知, 清水義宏, 上田卓也
- Organizer
  第5回21世紀大腸菌研究会
- Place of Presentation
  静岡国民年金健康センター「藤枝エミナース」
- Year and Date
  2008-07-28
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] 無細胞蛋白質合成系における30Sリボソームサブユニットの再構成無細胞蛋白質合成系における30Sリボソームサブユニットの再構成2008
- Author(s)
  田丸大知, 清水義宏, 上田卓也
- Organizer
  第10回日本RNA学会年会
- Place of Presentation
  札幌市・札幌コンベンションセンター
- Year and Date
  2008-07-23
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] 無細胞タンパク質合成系におけるtRNAの再構成2008
- Author(s)
  清水義宏
- Organizer
  第10回RNAミーティング
- Place of Presentation
  札幌
- Year and Date
  2008-07-23
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] 無細胞タンパク質合成系におけるtRNAの再構成2008
- Author(s)
  清水義宏
- Organizer
  第10回RNAミーティング
- Place of Presentation
  札幌
- Year and Date
  2008-07-23
- Data Source
  KAKENHI-PROJECT-20034009
[Presentation] 再構築型無細胞蛋白質合成システムの開発とその応用2008
- Author(s)
  清水義宏
- Organizer
  大阪大学蛋白質研究所セミナー
- Place of Presentation
  大阪
- Year and Date
  2008-09-25
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] Reconstitution of tRNA in a cell-free protein synthesis system2008
- Author(s)
  清水義宏
- Organizer
  第17回理研CDBミーティング
- Place of Presentation
  神戸
- Year and Date
  2008-10-14
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] 再構築型無細胞蛋白質合成システムの開発とその応用2008
- Author(s)
  清水義宏
- Organizer
  大阪大学蛋白質研究所セミナー
- Place of Presentation
  大阪
- Year and Date
  2008-09-25
- Data Source
  KAKENHI-PROJECT-20034009
[Presentation] Reconstruction of functional E. coli 30S ribosomal subunits in a cell-free system2008
- Author(s)
  Daichi Tamaru, Yoshihiro Shimizu, Takuya Ueda
- Organizer
  The Fourth International Meeting on Synthetic Biology
- Place of Presentation
  Hong Kong University of Science and Technology
- Year and Date
  2008-10-10
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] 大腸菌trans-translationにおけるSmpBの機能解析2007
- Author(s)
  清水義宏
- Organizer
  第2回無細胞生命科学研究会
- Place of Presentation
  東京大学柏キャンパス
- Year and Date
  2007-10-19
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] 大腸菌trans-translationにおけるSmpBの機能解析2007
- Author(s)
  清水義宏
- Organizer
  第2回無細胞生命科学研究会
- Place of Presentation
  柏
- Year and Date
  2007-10-19
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] Application of PURE system, the reconstituted cell-free protein synthesis system.2007
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Synthetic Biology 3.0
- Place of Presentation
  ETH Zurich, Switzerland
- Year and Date
  2007-06-25
- Data Source
  KAKENHI-PROJECT-19770143
[Presentation] PURE system による膜タンパク質の合成2007
- Author(s)
  阿部真人, 金森崇, 車命徹, 西山賢一, 清水義宏, 上田卓也
- Organizer
  日本分子生物学会
- Place of Presentation
  横浜
- Year and Date
  2007-12-14
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] PURE system におけるtRNA成分の再構成2007
- Author(s)
  福島伸也, 清水義宏, 大野敏, 横川隆志, 西川一八, 上田卓也
- Organizer
  日本分子生物学会
- Place of Presentation
  横浜
- Year and Date
  2007-12-14
- Data Source
  KAKENHI-PROJECT-18201040
[Presentation] Application of PURE system, the reconstituted cell-free protein synthesis system2007
- Author(s)
  Yoshihiro Shimizu
- Organizer
  Synthetic Biology 3.0
- Place of Presentation
  Zurich
- Year and Date
  2007-06-25
- Data Source
  KAKENHI-PROJECT-19770143

1. 野村慎一郎 (50372446)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
2. 瀧ノ上正浩 (20511249)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
3. 大野博久 (90612391)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. UEDA Takuya (80184927)

# of Collaborated Projects: 1 results

# of Collaborated Products: 18 results
5. Matsumoto Katsuhiko (60632859)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. UEDA Hiroki (20373277)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
7. NARUMI Ryohei (60582202)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. Yasunaga Masahiro (80450576)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 柳田敏雄 (30089883)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 齊藤博英 (20423014)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 鈴木志野 (10557002)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 石井俊一 (10556913)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 加藤創一郎 (30597787)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 網蔵和晃 (60735918)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 福山宥斗 (70880813)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 砂川玄志郎 (70710250)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. TOYOTA Tarou

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. HAMADA Shogo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
19. 山本翔太

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
20. 伊東孝祐

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
21. 松浦友亮

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
22. 平岡陽花

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
23. 大出晃士

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
24. 田中謙二

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
25. 加藤泰彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Shimizu Yoshihiro 清水 義宏

SHIMIZU Yoshihiro 清水 義宏

Research Projects

Research Products

Co-Researchers

Biology of CO world

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Development of a method for determining celebral infarction sites by serum omics analysisPrincipal Investigator

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AutoMatter: Toward creation and expansion of programmable micro-active matter

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Creation and development of programmable dynamic microparticles "auto-matter"

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Creating a pharmacological evaluation system using a highly sensitive single cell ESI-MS analysis for the development of innovative new drugs.

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Elucidation of higher-order structure of central dogma process by specific and extensive analyses of translational template nucleic acidsPrincipal Investigator

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Proteome analysis for low abundant ptoteins

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State analyses of a cell-free protein synthesis system using ribosome profilingPrincipal Investigator

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Development of the self-replicable cell-free protein synthesis systemPrincipal Investigator

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人工細胞モデル構築のための基盤技術としての無細胞タンパク質合成システムの構築Principal Investigator

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Investigation of the ribosome dynamics generated by trans-translation specific SmpB proteinPrincipal Investigator

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Reconstitution of cell-free protein maturation system coupled with translation system.

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[Book] RNA実験ノート上巻2008

Author(s)

Publisher

Shimizu Yoshihiro 清水義宏

SHIMIZU Yoshihiro 清水義宏

[Book] RNA実験ノート上「大腸菌由来酵素・因子群を用いた翻訳」2008