Nishikawa Yohei 西川洋平

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nishikawa yohei 西川洋平

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Researcher Number	90867277
Other IDs	https://orcid.org/0000-0001-5443-7230
Affiliation (Current)	2025: 国立研究開発法人産業技術総合研究所, 生命工学領域, 研究員
Affiliation (based on the past Project Information) *help	2022 – 2025: 国立研究開発法人産業技術総合研究所, 生命工学領域, 研究員 2021 – 2022: 早稲田大学, ナノ・ライフ創新研究機構, 次席研究員(研究院講師) 2020: 国立研究開発法人産業技術総合研究所, 生命工学領域, 産総研特別研究員
Review Section/Research Field	Principal Investigator Basic Section 38020:Applied microbiology-related / Basic Section 27040:Biofunction and bioprocess engineering-related / Basic Section 63040:Environmental impact assessment-related Except Principal Investigator Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Basic Section 22060:Environmental systems for civil engineering-related / Basic Section 27040:Biofunction and bioprocess engineering-related
Keywords	Principal Investigator ゲノミクス / バクテリオファージ / 根圏 / 環境ウイルス / マイクロ流体デバイス / 環境微生物 / 薬剤耐性遺伝子 / 全ゲノム解析 / シングルセル Except Principal Investigator ファージ … More / ゲノム / 遺伝学的解析 / 腸内細菌 / メタゲノム解析 / 下水処理 / 細胞外遺伝子 / 薬剤耐性 / 乱泥流 / 炭素循環 / 微生物群集構造 / 海底下微生物生態系 / 超深海微生物生態系 / マイクロ流体デバイス / シングルセル解析 Less

1粒子ゲノム解析を用いたファージの適応進化におけるゲノム多様化戦略の解明Principal Investigator
- Principal Investigator
  
  西川洋平
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38020:Applied microbiology-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
ヒト腸内におけるダークマター「腸内ファージ」の生態的および生理的意義の解明に挑む
- Principal Investigator
  
  阪中幹祥
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  Kyoto University
Dynamics of antimicrobial resistance genes focusing on their carrier microbes and viruses
- Principal Investigator
  
  本多了
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 22060:Environmental systems for civil engineering-related
- Research Institution
  Kanazawa University
Development of single-virus genomics method from small amounts of soil for functional analysis of rhizosphere viruses.Principal Investigator
- Principal Investigator
  
  西川洋平
- Project Period (FY)
  2023 – 2024
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 27040:Biofunction and bioprocess engineering-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
日本海溝乱泥流物質供給システムと超深海・海底下微生物生態系との広域時空相関の解明
- Principal Investigator
  
  稲垣史生
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  Japan Agency for Marine-Earth Science and Technology
Development of a strategic resource process for uncultured microbes based on single-cell genomic data
- Principal Investigator
  
  Hosokawa Masahito
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 27040:Biofunction and bioprocess engineering-related
- Research Institution
  Waseda University
Analysis of spatio-temporal distribution of drug resistance genes in river water with single-cell genome sequencingPrincipal Investigator
- Principal Investigator
  
  nishikawa yohei
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 63040:Environmental impact assessment-related
- Research Institution
  Waseda University
  National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2020

All Journal Article Presentation Book

[Book] バイオサイエンスとインダストリー Vol.82 No.2（分担執筆）2024
- Author(s)
  安藤正浩, 西川洋平, 竹山春子
- Total Pages
  272
- Publisher
  バイオインダストリー協会
- Data Source
  KAKENHI-PROJECT-23K13612
[Book] シングルセル解析の新たな可能性（新規生理活性物質生産菌のハイスループットスクリーニングプラットフォーム構築の項）2021
- Author(s)
  西川洋平, 堀井俊平, 竹山春子
- Total Pages
  104
- Publisher
  北隆館
- Data Source
  KAKENHI-PROJECT-20K19980
[Journal Article] Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere2024
- Author(s)
  Jitsuno, K., Hoshino, T., Nishikawa, Y., Kogawa, M., Mineta, K., Strasser, M., Ikehara, K., Everest, J., Maeda, L., Inagaki, F., Takeyama, H., IODP Expedition 386 Scientists.
- Journal Title
  
  mSphere
  
  Volume: 9 Issue: 1
- DOI
  10.1128/msphere.00337-23
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H00429, KAKENHI-PROJECT-23K22586, KAKENHI-PROJECT-23K22618
[Journal Article] Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles2024
- Author(s)
  Nishikawa Yohei、Wagatsuma Ryota、Tsukada Yuko、Chia-ling Lin、Chijiiwa Rieka、Hosokawa Masahito、Takeyama Haruko
- Journal Title
  
  bioRxiv
  
  Volume: -
- DOI
  10.1101/2024.04.18.589877
- Open Access
- Data Source
  KAKENHI-PROJECT-21H01733
[Journal Article] Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing2023
- Author(s)
  Kogawa Masato、Nishikawa Yohei、Saeki Tatsuya、Yoda Takuya、Arikawa Koji、Takeyama Haruko、Hosokawa Masahito
- Journal Title
  
  Frontiers in Microbiology
  
  Volume: 14
- DOI
  10.3389/fmicb.2023.1133917
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H01733
[Journal Article] Tools for microbial single-cell genomics for obtaining uncultured microbial genomes2023
- Author(s)
  Hosokawa Masahito、Nishikawa Yohei
- Journal Title
  
  Biophysical Reviews
  
  Volume: 16 Issue: 1 Pages: 69-77
- DOI
  10.1007/s12551-023-01124-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H01733
[Journal Article] Strain-level profiling of viable microbial community by selective single-cell genome sequencing2022
- Author(s)
  Hosokawa Masahito、Endoh Taruho、Kamata Kazuma、Arikawa Koji、Nishikawa Yohei、Kogawa Masato、Saeki Tatsuya、Yoda Takuya、Takeyama Haruko
- Journal Title
  
  Scientific Reports
  
  Volume: 12 Issue: 1
- DOI
  10.1038/s41598-022-08401-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H01733
[Journal Article] Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing2022
- Author(s)
  Kogawa Masato、Nishikawa Yohei、Saeki Tatsuya、Yoda Takuya、Arikawa Koji、Takeyama Haruko、Hosokawa Masahito
- Journal Title
  
  bioRxiv
  
  Volume: －
- DOI
  10.1101/2022.03.24.485581
- Open Access
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 土壌微生物叢アトラスに基づいた環境制御による循環型協生農業プラットフォーム構築2024
- Author(s)
  西川洋平
- Organizer
  ムーンショット早稲田デー「わが国の破壊的イノベーションを先導するためには何をすべきか？」
- Data Source
  KAKENHI-PROJECT-23K13612
[Presentation] Single-virus genomics of environmental DNA viruses reveals genomic micro-diversities.2024
- Author(s)
  Yohei Nishikawa
- Organizer
  UQ-Waseda University Joint Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K13612
[Presentation] 微生物・ウイルスを対象としたシングルセルゲノム解析2023
- Author(s)
  西川洋平
- Organizer
  BioJapan 2023
- Data Source
  KAKENHI-PROJECT-23K13612
[Presentation] 日本海溝に生息する超深海微生物群の遺伝的機能の解明2023
- Author(s)
  實野佳奈, 西川洋平, 星野辰彦, 稲垣史生, 竹山春子
- Organizer
  第23回日本マリンバイオテクノロジー学会
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 環境中の未知微生物・ウイルスを対象としたシングルセルゲノム解析技術の開発と応用2023
- Author(s)
  西川洋平
- Organizer
  Webセミナー「シングルセルゲノム解析が明らかにする未知の環境微生物」
- Invited
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 日本海溝における底質柱状試料中の微小マイクロプラスチックの存在実態調査2023
- Author(s)
  田中周平, 實野佳奈, 星野辰彦, 西川洋平, 竹山春子, 稲垣史生
- Organizer
  水環境学会シンポジウム
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 環境細菌・ファージの機能解明に向けた1細胞・1粒子ゲノム解析技術の開発と応用2023
- Author(s)
  西川洋平
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PROJECT-23K26229
[Presentation] 日本海溝に生息する深海微生物の多様性及び機能の解明2023
- Author(s)
  實野佳奈, 西川洋平, 星野辰彦, 稲垣史生, 竹山春子
- Organizer
  第75回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 環境細菌・ファージの機能解明に向けた 1細胞・1粒子ゲノム解析技術の開発と応用、2023
- Author(s)
  西川洋平
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 環境中の未知微生物・ウイルスを対象としたシングルセルゲノム解析技術の開発と応用2023
- Author(s)
  西川洋平
- Organizer
  Webセミナー「シングルセルゲノム解析が明らかにする未知の環境微生物」
- Invited
- Data Source
  KAKENHI-PROJECT-23K13612
[Presentation] Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere2023
- Author(s)
  Jitsuno, K., Hoshino, T., Nishikawa, Y., Kogawa, M., Mineta, K., Inagaki, F., Takeyama, H., IODP Expedition 386 Scientists
- Organizer
  13th Asia-Pacific Marine Biotechnology Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 環境細菌・ファージの機能解明に向けた 1細胞・1粒子ゲノム解析技術の開発と応用2023
- Author(s)
  西川洋平
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PROJECT-23K13612
[Presentation] 環境細菌・ウイルスを対象とした 1細胞・1粒子レベルのゲノム解析技術の開発と応用2022
- Author(s)
  西川洋平
- Organizer
  第22回マリンバイオテクノロジー学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 細菌1細胞レベルの微量RNAからのRNA-seq手法の開発2022
- Author(s)
  西村美郁、西川洋平、竹山春子、細川正人
- Organizer
  第74回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] ゲノム情報を用いた日本海溝の海底微生物の多様性と機能の解明2022
- Author(s)
  實野佳奈、西川洋平、星野辰彦、小川雅人、稲垣史生、竹山春子
- Organizer
  日本農芸化学会2022 年度大会
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 細菌・ウイルスのシングルセルゲノム解析技術を用いた河川水中における遺伝子の伝播解析2022
- Author(s)
  西川洋平, 塚田祐子, 我妻竜太, Lin Chia-Ling, 小川雅人, 細川正人, 竹山春子
- Organizer
  第74回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 細菌シングルセルRNA-seq手法の開発2022
- Author(s)
  西村美郁、西川洋平、竹山春子、細川正人
- Organizer
  日本生物工学会東日本支部　第17回学生発表討論会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 日本海溝の海底堆積物における微生物群集の地域多様性2022
- Author(s)
  實野佳奈、西川洋平、星野辰彦、小川雅人、稲垣史生、竹山春子
- Organizer
  第22回マリンバイオテクノロジー学会大会
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] Biogeographical distribution and diversity of hadal microbial communities along a ~500 km-transect of the Japan Trench (IODP Expedition 386)2022
- Author(s)
  Jitsuno, K., Hoshino, T., Nishikawa, Y., Kogawa, M., Inagaki, F., Takeyama, H., Strasser, M., Ikehara, K., Everest, J., Maeda, L., IODP Expedition 386 Scientists
- Organizer
  International Society for Microbial Ecology (ISME) 18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 日本海溝の海底微生物の地域多様性と代謝機構の解析2022
- Author(s)
  實野佳奈、西川洋平、星野辰彦、小川雅人、稲垣史生、竹山春子
- Organizer
  第20回産総研・産技連LS-BT合同研究発表会
- Data Source
  KAKENHI-PROJECT-22H00429
[Presentation] 環境細菌・ウイルスを対象とした 1細胞・1粒子レベルのゲノム解析技術の開発と応用2022
- Author(s)
  西川洋平
- Organizer
  第4回ファーマラボ EXPO
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] Microfluidic droplet-based single-cell genome sequencing reveals biological diversities of environmental microbiome in the surrounding area of the Red Sea2021
- Author(s)
  Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Kai Takahashi, Keigo Ide, Kei Yura, Hayedeh Behzad, Takashi Gojobori, Haruko Takeyama
- Organizer
  The 2020 International Chemical Congress of Pacific Basin Societies (Pacifichem 2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] 水圏環境の細菌・ファージの動態解明に向けたシングルゲノム解析2021
- Author(s)
  西川洋平
- Organizer
  第21回マリンバイオテクノロジー学会大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] Microfluidic droplet-based single-cell genomics in aquatic and marine environments for revealing microbial and phage diversity.2021
- Author(s)
  Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Keigo Ide, Ryota Wagatsuma, Yuko Tsukada, Haruko Takeyama
- Organizer
  2021 AFOB virtual conference
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] 河川水中の細菌・ウイルスを対象とした1細胞・1粒子レベルでのゲノム解析2021
- Author(s)
  西川洋平, 我妻竜太, 塚田祐子, 井手圭吾, 小川雅人, 細川正人, 竹山春子
- Organizer
  日本水処理生物学会第57回（神奈川）大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 水圏環境の細菌・ファージの動態解明に向けたシングルゲノム解析2021
- Author(s)
  西川洋平
- Organizer
  第21回マリンバイオテクノロジー学会大会
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] ファージ-細菌間の相互作用解析に向けたシングルゲノム解析技術の開発2021
- Author(s)
  我妻竜太, 西川洋平, 塚田祐子, 井手圭吾, 千々岩樹佳, 竹山春子
- Organizer
  第9回日本生物工学会東日本支部コロキウム
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] Microfluidic droplet-based single-cell genome sequencing reveals biological diversities of environmental microbiome in the surrounding area of the Red Sea2021
- Author(s)
  Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Katsuhiko Mineta, Kai Takahashi, Keigo Ide, Kei Yura, Hayedeh Behzad, Takashi Gojobori, Haruko Takeyama
- Organizer
  The 2020 International Chemical Congress of Pacific Basin Societies (Pacifichem 2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 未培養腸内細菌の１細胞ロングリードシーケンスによる完全長ゲノムの獲得2021
- Author(s)
  細川正人, 小川雅人, 西川洋平, 佐伯達也, 依田卓也, 有川浩司, 竹山春子
- Organizer
  第73回日本生物工学会大会
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 多摩川に存在する薬剤耐性菌のゲノム情報をシングルセルレベルで解析する2021
- Author(s)
  西川洋平, 小川雅人, 塚田祐子, 井手圭吾, 細川正人, 竹山春子
- Organizer
  第55回日本水環境学会年会
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] 1細胞・1粒子レベルのゲノム情報から読み解く、環境細菌とファージの相互作用2021
- Author(s)
  西川洋平
- Organizer
  バイオインフォマティクス相談部会第五回講演会
- Invited
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] Microfluidic droplet-based single-cell genomics in aquatic and marine environments for revealing microbial and phage diversity2021
- Author(s)
  Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Keigo Ide, Ryota Wagatsuma, Yuko Tsukada, Haruko Takeyama
- Organizer
  2021 AFOB virtual conference
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 河川水中の細菌・ウイルスを対象とした1細胞・1粒子レベルでのゲノム解析2021
- Author(s)
  西川洋平, 我妻竜太, 塚田祐子, 井手圭吾, 小川雅人, 細川正人, 竹山春子
- Organizer
  日本水処理生物学会第57回（神奈川）大会
- Data Source
  KAKENHI-PROJECT-20K19980
[Presentation] Single-cell Genomics of River Water Microbiomes for Revealing the Distribution of Mobile Genetic Elements2021
- Author(s)
  Yohei Nishikawa, Yuko Tsukada, Ryota Wagatsuma, Keigo Ide, Masato Kogawa, Masahito Hosokawa, Haruko Takeyama
- Organizer
  World Microbe Forum 2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21H01733
[Presentation] 紅海周辺の多様な環境微生物を対象とした大規模かつ高精度なシングルセルゲノム解析2020
- Author(s)
  西川洋平, 小川雅人, 細川正人, 峯田克彦, 高橋海, 坂梨千佳子, 由良敬, 井手圭吾, ベザドハイジ, 五條堀孝, 竹山春子
- Organizer
  第43回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-20K19980

1. Hosokawa Masahito (60722981)

# of Collaborated Projects: 1 results

# of Collaborated Products: 13 results
2. 稲垣史生 (50360748)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
3. 竹山春子 (60262234)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
4. 星野辰彦 (30386619)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
5. 田中周平 (00378811)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. 本多了 (40422456)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 松浦哲久 (90771585)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 沈尚 (20882426)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 阪中幹祥 (60801892)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Nishikawa Yohei 西川 洋平

nishikawa yohei 西川 洋平

Research Projects

Research Products

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1粒子ゲノム解析を用いたファージの適応進化におけるゲノム多様化戦略の解明Principal Investigator

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ヒト腸内におけるダークマター「腸内ファージ」の生態的および生理的意義の解明に挑む

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Dynamics of antimicrobial resistance genes focusing on their carrier microbes and viruses

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Development of single-virus genomics method from small amounts of soil for functional analysis of rhizosphere viruses.Principal Investigator

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日本海溝乱泥流物質供給システムと超深海・海底下微生物生態系との広域時空相関の解明

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Development of a strategic resource process for uncultured microbes based on single-cell genomic data

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Analysis of spatio-temporal distribution of drug resistance genes in river water with single-cell genome sequencingPrincipal Investigator

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[Book] バイオサイエンスとインダストリー Vol.82 No.2（分担執筆）2024

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[Book] シングルセル解析の新たな可能性（新規生理活性物質生産菌のハイスループットスクリーニングプラットフォーム構築の項）2021

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[Journal Article] Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere2024

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[Journal Article] Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles2024

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[Journal Article] Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing2023

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[Journal Article] Tools for microbial single-cell genomics for obtaining uncultured microbial genomes2023

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[Journal Article] Strain-level profiling of viable microbial community by selective single-cell genome sequencing2022

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Nishikawa Yohei 西川洋平

nishikawa yohei 西川洋平

[Presentation] 細菌・ウイルスのシングルセルゲノム解析技術を用いた河川水中における遺伝子の伝播解析2022