Inoue Jun 井上潤

Researcher Number	10596779
Other IDs
Affiliation (Current)	2020: 東京大学, 大気海洋研究所, 助教
Affiliation (based on the past Project Information) *help	2017 – 2018: 沖縄科学技術大学院大学, マリンゲノミックスユニット, 研究員 2016: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員 2015: 沖縄科学技術大学院大学, Mathematical Biology, スタッフサイエンティスト 2015: 沖縄科学技術大学院大学, Mathematical Biology, 研究員 2013 – 2014: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員 2012: 東京大学, 大気海洋研究所, 研究員
Review Section/Research Field	Principal Investigator Biodiversity/Systematics / Evolutionary biology / Basic Section 45030:Biodiversity and systematics-related
Keywords	Principal Investigator 真骨魚類 / 解析パイプライン / 全ゲノム重複 / 分子系統 / 真骨類 / Web tool / ゲノム比較 / 左右相称動物 / 脊索動物の起源 / オーソログ … More

核ゲノム解析による進化速度の速い種の系統的位置決定：尾索動物オタマボヤ類を例にPrincipal InvestigatorOngoing
- Principal Investigator
  
  井上潤
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
Development of an integrated pipeline of ortholog identification for comparative genome analyses of vertebratesPrincipal Investigator
- Principal Investigator
  
  Inoue Jun
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Evolutionary biology
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
Resolving ray-finned fish phylogeny with genomic data: Developing an analysis pipeline for identification of homologous genesPrincipal Investigator
- Principal Investigator
  
  Inoue Jun
- Project Period (FY)
  2012 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
  The University of Tokyo

All 2019 2018 2017 2015 2014 2013 2012

All Journal Article Presentation Book

[Book] 魚類学の百科事典2018
- Author(s)
  井上潤
- Publisher
  丸善出版
- Data Source
  KAKENHI-PROJECT-15K07172
[Journal Article] ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but not in Other Animal Genomes2019
- Author(s)
  Jun Inoue, Keisuke Nakashima, and Noriyuki Satoh
- Journal Title
  
  Genes
  
  Volume: 10 Pages: 294-294
- DOI
  10.3390/genes10040294
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06142, KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824
[Journal Article] Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides2019
- Author(s)
  Akira Shiraishi, Toshimi Okuda, Natsuko Miyasaka, Tomohiro Osugi, Yasushi Okuno, Jun Inoue, and Honoo Satake
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 116 (16) Pages: 7847-7856
- DOI
  10.1073/pnas.1816640116
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14687, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K07430
[Journal Article] ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa2019
- Author(s)
  Inoue Jun、Satoh Noriyuki
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 36 Pages: 621-631
- DOI
  10.1093/molbev/msy226
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-15K07172
[Journal Article] Deuterostome Genomics: Lineage-specific protein expressions that enabled chordate muscle evolution2018
- Author(s)
  Inoue, J., Satoh, N.
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 35 Pages: 914-924
- DOI
  10.1093/molbev/msy002
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16H04824
[Journal Article] The chordate ancestor possessed a single copy of the Brachyury gene for notochord acquisition2017
- Author(s)
  Inoue, J., Yasuoka, Y., Takahashi, H. Satoh, N.
- Journal Title
  
  Zoological Letters
  
  Volume: 3 Pages: 4-4
- DOI
  10.1186/s40851-017-0064-9
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-26650087, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K21559, KAKENHI-PROJECT-15K07174
[Journal Article] Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling.2015
- Author(s)
  Inoue, J., Sato, Y., Sinclair, R., Tsukamoto, T., and Nishida, M.
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 112 Pages: 14918-14923
- DOI
  10.1073/pnas.1507669112
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-24770070
[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018
- Author(s)
  井上潤，佐藤矩行
- Organizer
  日本動物学会第89 回大会 (代替)
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018
- Author(s)
  井上潤，佐藤矩行．
- Organizer
  日本動物学会第89 回大会 (代替)
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定2015
- Author(s)
  井上潤，佐藤行人，シンクレアロバート，塚本勝巳，西田睦
- Organizer
  日本進化学会年会
- Place of Presentation
  中央大学，東京
- Year and Date
  2015-08-20
- Invited
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定．2015
- Author(s)
  井上潤，佐藤行人，シンクレアロバート，塚本勝巳，西田睦．
- Organizer
  日本進化学会年会
- Place of Presentation
  中央大学，東京．
- Year and Date
  2015-08-20
- Invited
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree2015
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Introduction to the analysis of molecular evolution in the genomic era.
- Place of Presentation
  Fudan University, Shanghai
- Year and Date
  2015-11-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree.2015
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Introduction to the analysis of molecular evolution in the genomic era
- Place of Presentation
  Fudan University, Shanghai
- Year and Date
  2015-11-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] Selecting molecular markers from transcriptome data for fish phylogenetics.2014
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Workshop on Methods for Biodiversity Research,
- Place of Presentation
  Fudan Univ., Shanghai
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] 脊椎動物 3 億年のゲノム進化：ゲノム重複に由来する遺伝子の保持と進化に寄与した自然選択項の検出．2013
- Author(s)
  井上潤，佐藤行人，西田睦．
- Organizer
  日本進化学会
- Place of Presentation
  筑波大学
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] 真骨魚類ゲノムの進化特性: トランスクリプトーム相同遺伝子データベースの構築．2012
- Author(s)
  井上潤
- Organizer
  日本進化学会年会
- Place of Presentation
  首都大学東京
- Data Source
  KAKENHI-PROJECT-24770070

1. NISHIDA Mutsumi (90136896)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
2. TSUKAMOTO Katsumi (10090474)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. SINCLAIR Robert (50423744)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. SATO Yukuto (20566418)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
5. SATOH Noriyuki (30025481)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
6. 西野敦雄 (50343116)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. ROBERT Sinclair

# of Collaborated Projects: 0 results

# of Collaborated Products: 4 results
8. NAKASHIMA Keisuke

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
9. Shiraishi Akira

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
10. Osugi Tomohiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
11. 安岡有理

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
12. 高橋弘樹

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
13. 佐竹炎

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Inoue Jun 井上 潤

Research Projects

Research Products

Co-Researchers

核ゲノム解析による進化速度の速い種の系統的位置決定：尾索動物オタマボヤ類を例にPrincipal InvestigatorOngoing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of an integrated pipeline of ortholog identification for comparative genome analyses of vertebratesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Resolving ray-finned fish phylogeny with genomic data: Developing an analysis pipeline for identification of homologous genesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 魚類学の百科事典2018

Author(s)

Publisher

Data Source

[Journal Article] ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but not in Other Animal Genomes2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Deuterostome Genomics: Lineage-specific protein expressions that enabled chordate muscle evolution2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The chordate ancestor possessed a single copy of the Brachyury gene for notochord acquisition2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling.2015

Author(s)

Journal Title

DOI

Data Source

[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018

Author(s)

Organizer

Data Source

[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018

Author(s)

Organizer

Data Source

[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定2015

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定．2015

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree2015

Author(s)

Organizer

Place of Presentation

Inoue Jun 井上潤