• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Inoue Jun  井上 潤

ORCIDConnect your ORCID iD *help
Researcher Number 10596779
Other IDs
Affiliation (Current) 2023: 東京大学, 大気海洋研究所, 准教授
Affiliation (based on the past Project Information) *help 2023: 東京大学, 大気海洋研究所, 准教授
2020 – 2022: 東京大学, 大気海洋研究所, 助教
2019: 国立遺伝学研究所, ゲノム・進化研究系, 特任准教授
2017 – 2018: 沖縄科学技術大学院大学, マリンゲノミックスユニット, 研究員
2016: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員 … More
2015: 沖縄科学技術大学院大学, Mathematical Biology, スタッフサイエンティスト
2015: 沖縄科学技術大学院大学, Mathematical Biology, 研究員
2013 – 2014: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員
2012: 東京大学, 大気海洋研究所, 研究員 Less
Review Section/Research Field
Principal Investigator
Biodiversity/Systematics / Evolutionary biology / Basic Section 45030:Biodiversity and systematics-related / Medium-sized Section 63:Environmental analyses and evaluation and related fields
Keywords
Principal Investigator
真骨魚類 / 解析パイプライン / 分子系統解析 / 全ゲノム重複 / 分子系統 / 真骨類 / Web tool / ゲノム比較 / 左右相称動物 / 脊索動物の起源 … More / オーソログ / web tool / 比較ゲノム / シンテニー / ゲノム進化 / 系統解析 / シンテニー解析 / 全タンパク質遺伝子解析パイプライン / トランスクリプトームデータ / 遊泳性尾索動物 / トランスクリプトームデータ。 / 全タンパク質遺伝子解析パイプライン。 / 全タンパク質遺伝子解読 / オタマボヤ / ゲノム系統解析 / 尾索類 / 遺伝子系統樹 / トランスクリプトーム / 脊索動物 / 環境 DNA / トカラ海峡 / 海洋生物分布マップ Less
  • Research Projects

    (4 results)
  • Research Products

    (30 results)
  • Co-Researchers

    (12 People)
  •  A move for sea subtropicalization: development of a marine organism map by environmental DNA analysesPrincipal Investigator

    • Principal Investigator
      井上 潤
    • Project Period (FY)
      2021 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 63:Environmental analyses and evaluation and related fields
    • Research Institution
      The University of Tokyo
  •  核ゲノム解析による進化速度の速い種の系統的位置決定:尾索動物オタマボヤ類を例にPrincipal Investigator

    • Principal Investigator
      井上 潤
    • Project Period (FY)
      2018 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 45030:Biodiversity and systematics-related
    • Research Institution
      The University of Tokyo
      National Institute of Genetics
      Okinawa Institute of Science and Technology Graduate University
  •  Development of an integrated pipeline of ortholog identification for comparative genome analyses of vertebratesPrincipal Investigator

    • Principal Investigator
      Inoue Jun
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Evolutionary biology
    • Research Institution
      Okinawa Institute of Science and Technology Graduate University
  •  Resolving ray-finned fish phylogeny with genomic data: Developing an analysis pipeline for identification of homologous genesPrincipal Investigator

    • Principal Investigator
      Inoue Jun
    • Project Period (FY)
      2012 – 2015
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Biodiversity/Systematics
    • Research Institution
      Okinawa Institute of Science and Technology Graduate University
      The University of Tokyo

All 2021 2020 2019 2018 2017 2015 2014 2013 2012

All Journal Article Presentation Book

  • [Book] 魚類学の百科事典2018

    • Author(s)
      井上 潤
    • Publisher
      丸善出版
    • Data Source
      KAKENHI-PROJECT-15K07172
  • [Journal Article] A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum2021

    • Author(s)
      Satoh Noriyuki、Tominaga Hitoshi、Kiyomoto Masato、Hisata Kanako、Inoue Jun、Nishitsuji Koki
    • Journal Title

      Frontiers in Cell and Developmental Biology

      Volume: 9 Pages: 1-16

    • DOI

      10.3389/fcell.2021.696875

    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Journal Article] Commentary on ORTHOSCOPE: a web tool for genome comparisons.2021

    • Author(s)
      Inoue, J.
    • Journal Title

      Journal of Genetics and Genomes

      Volume: 5 Pages: 1-1

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Journal Article] ORTHOSCOPE*: A Phylogenetic Pipeline to Infer Gene Histories from Genome-Wide Data2021

    • Author(s)
      Inoue Jun
    • Journal Title

      Molecular Biology and Evolution

      Volume: 39 Issue: 1 Pages: 1-10

    • DOI

      10.1093/molbev/msab301

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Journal Article] Novel Mitochondrial DNA Markers for Scleractinian Corals and Generic-Level Environmental DNA Metabarcoding2021

    • Author(s)
      Shinzato Chuya、Narisoko Haruhi、Nishitsuji Koki、Nagata Tomofumi、Satoh Noriyuki、Inoue Jun
    • Journal Title

      Frontiers in Marine Science

      Volume: 8 Pages: 1-9

    • DOI

      10.3389/fmars.2021.758207

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21860
  • [Journal Article] An Investigation into the Genetic History of Japanese Populations of Three Starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, Based on Complete Mitochondrial DNA Sequences2020

    • Author(s)
      Inoue Jun、Hisata Kanako、Yasuda Nina、Satoh Noriyuki
    • Journal Title

      G3: Genes|Genomes|Genetics

      Volume: 10 Issue: 7 Pages: 2519-2528

    • DOI

      10.1534/g3.120.401155

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-17H04996
  • [Journal Article] Identification of ancient viruses from metagenomic data of the Jomon people2020

    • Author(s)
      Nishimura Luca、Sugimoto Ryota、Inoue Jun、Nakaoka Hirofumi、Kanzawa-Kiriyama Hideaki、Shinoda Ken-ichi、Inoue Ituro
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Issue: 3 Pages: 287-296

    • DOI

      10.1038/s10038-020-00841-6

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21405, KAKENHI-PLANNED-18H05507
  • [Journal Article] Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer2020

    • Author(s)
      Kun-Lung Li, Keisuke Nakashima, Jun Inoue, and Noriyuki Satoh
    • Journal Title

      Genes

      Volume: 11 Issue: 8 Pages: 937-937

    • DOI

      10.3390/genes11080937

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06142, KAKENHI-PROJECT-18K06396
  • [Journal Article] Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes2020

    • Author(s)
      Shinzato Chuya、Khalturin Konstantin、Inoue Jun、Zayasu Yuna、Kanda Miyuki、Kawamitsu Mayumi、Yoshioka Yuki、Yamashita Hiroshi、Suzuki Go、Satoh Noriyuki
    • Journal Title

      Molecular Biology and Evolution

      Volume: 38 Issue: 1 Pages: 16-30

    • DOI

      10.1093/molbev/msaa216

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21860, KAKENHI-PROJECT-18H02270, KAKENHI-PROJECT-17K07949, KAKENHI-PROJECT-17K15179, KAKENHI-PROJECT-20H03235, KAKENHI-PROJECT-17KT0027
  • [Journal Article] dbCNS: A New Database for Conserved Noncoding Sequences2020

    • Author(s)
      Inoue Jun、Saitou Naruya
    • Journal Title

      Molecular Biology and Evolution

      Volume: 38 Issue: 4 Pages: 1665-1676

    • DOI

      10.1093/molbev/msaa296

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Journal Article] ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes2019

    • Author(s)
      Jun Inoue, Keisuke Nakashima, and Noriyuki Satoh
    • Journal Title

      Genes

      Volume: 10 Issue: 4 Pages: 1-9

    • DOI

      10.3390/genes10040294

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K06142, KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824
  • [Journal Article] Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides2019

    • Author(s)
      Akira Shiraishi, Toshimi Okuda, Natsuko Miyasaka, Tomohiro Osugi, Yasushi Okuno, Jun Inoue, and Honoo Satake
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 116 (16) Issue: 16 Pages: 7847-7856

    • DOI

      10.1073/pnas.1816640116

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K14687, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K07430, KAKENHI-PROJECT-19K06752
  • [Journal Article] Deuterostome genomics: Lineage-specific protein expansions that enabled chordate muscle evolution.2018

    • Author(s)
      Inoue, J., Satoh, N.
    • Journal Title

      Molecular Biology and Evolution.

      Volume: 35 Issue: 4 Pages: 914-924

    • DOI

      10.1093/molbev/msy002

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16H04824
  • [Journal Article] ORTHOSCOPE: An Automatic Web Tool for Phylogenetically Inferring Bilaterian Orthogroups with User-Selected Taxa2018

    • Author(s)
      Inoue Jun、Satoh Noriyuki
    • Journal Title

      Molecular Biology and Evolution

      Volume: 36 Issue: 3 Pages: 621-631

    • DOI

      10.1093/molbev/msy226

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-15K07172
  • [Journal Article] The chordate ancestor possessed a single copy of the Brachyury gene for notochord aquisition2017

    • Author(s)
      Inoue, J., Yasuoka, Y., Takahashi, H. Satoh, N.
    • Journal Title

      Zoological Letters

      Volume: 3 Issue: 1 Pages: 4-4

    • DOI

      10.1186/s40851-017-0064-9

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-26650087, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K21559, KAKENHI-PROJECT-15K07174
  • [Journal Article] Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling2015

    • Author(s)
      Inoue, J., Sato, Y., Sinclair, R., Tsukamoto, T., and Nishida, M.
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 112 Issue: 48 Pages: 14918-14923

    • DOI

      10.1073/pnas.1507669112

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-24770070
  • [Presentation] dbCNS: a new database for conserved non-coding sequencess2021

    • Author(s)
      Inoue, J.
    • Organizer
      Genome Concept Centennial Symposium
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] Using dbCNS, a database of conserved noncoding sequences2021

    • Author(s)
      井上 潤
    • Organizer
      遺伝研共同研究会「日本列島人の起源と成立をゲノム情報から探る」
    • Invited
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] dbCNS: 進化的に保存された非コード配列の新たなデータベース2021

    • Author(s)
      井上 潤、斎藤成也
    • Organizer
      日本動物学会オンライン米子大会
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] 脊椎動物の頭部筋肉に特異的なミオシン重鎖遺伝子MYH16 の起源と進化2020

    • Author(s)
      西野純子、井上 潤、神田真司、西野敦雄
    • Organizer
      日本動物学会・東北支部大会
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] 縄文人由来 DNA を用いた古代微生物の配列解析2020

    • Author(s)
      西村瑠佳、杉本竜太、井上 潤、中岡博史、神澤秀明、篠田謙一、井ノ上逸郎
    • Organizer
      日本進化学会
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発.2018

    • Author(s)
      井上 潤,佐藤 矩行
    • Organizer
      日本動物学会 第89 回大会 (代替)
    • Data Source
      KAKENHI-PROJECT-15K07172
  • [Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発.2018

    • Author(s)
      井上 潤,佐藤 矩行.
    • Organizer
      日本動物学会 第89 回大会 (代替)
    • Data Source
      KAKENHI-PROJECT-18K06396
  • [Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定.2015

    • Author(s)
      井上 潤,佐藤 行人,シンクレア ロバート,塚本 勝巳,西田 睦.
    • Organizer
      日本進化学会年会
    • Place of Presentation
      中央大学,東京.
    • Year and Date
      2015-08-20
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K07172
  • [Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定2015

    • Author(s)
      井上 潤,佐藤 行人,シンクレア ロバート,塚本 勝巳,西田 睦
    • Organizer
      日本進化学会年会
    • Place of Presentation
      中央大学,東京
    • Year and Date
      2015-08-20
    • Invited
    • Data Source
      KAKENHI-PROJECT-24770070
  • [Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree2015

    • Author(s)
      Inoue J., Sato, Y., Sinclair, R., Nishida, M.
    • Organizer
      Introduction to the analysis of molecular evolution in the genomic era.
    • Place of Presentation
      Fudan University, Shanghai
    • Year and Date
      2015-11-06
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-24770070
  • [Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree.2015

    • Author(s)
      Inoue J., Sato, Y., Sinclair, R., Nishida, M.
    • Organizer
      Introduction to the analysis of molecular evolution in the genomic era
    • Place of Presentation
      Fudan University, Shanghai
    • Year and Date
      2015-11-06
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K07172
  • [Presentation] Selecting molecular markers from transcriptome data for fish phylogenetics.2014

    • Author(s)
      Inoue J., Sato, Y., Sinclair, R., Nishida, M.
    • Organizer
      Workshop on Methods for Biodiversity Research,
    • Place of Presentation
      Fudan Univ., Shanghai
    • Data Source
      KAKENHI-PROJECT-24770070
  • [Presentation] 脊椎動物 3 億年のゲノム進化:ゲノム重複に由来する遺伝子の保持と進化に寄与した自然選択項の検出.2013

    • Author(s)
      井上 潤,佐藤 行人,西田 睦.
    • Organizer
      日本進化学会
    • Place of Presentation
      筑波大学
    • Data Source
      KAKENHI-PROJECT-24770070
  • [Presentation] 真骨魚類ゲノムの進化特性: トランスクリプトーム相同遺伝子データベースの構築.2012

    • Author(s)
      井上 潤
    • Organizer
      日本進化学会年会
    • Place of Presentation
      首都大学東京
    • Data Source
      KAKENHI-PROJECT-24770070
  • 1.  NISHIDA Mutsumi (90136896)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 2.  TSUKAMOTO Katsumi (10090474)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 3.  SINCLAIR Robert (50423744)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  SATO Yukuto (20566418)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 5.  SATOH Noriyuki (30025481)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 6 results
  • 6.  西野 敦雄 (50343116)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 7.  兵藤 晋 (40222244)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  新里 宙也 (70524726)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  伊藤 幸彦 (80345058)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  NAKASHIMA Keisuke
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 11.  ROBERT Sinclair
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 3 results
  • 12.  白石 慧
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

URL: 

Are you sure that you want to link your ORCID iD to your KAKEN Researcher profile?
* This action can be performed only by the researcher himself/herself who is listed on the KAKEN Researcher’s page. Are you sure that this KAKEN Researcher’s page is your page?

この研究者とORCID iDの連携を行いますか?
※ この処理は、研究者本人だけが実行できます。

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi