Inoue Jun 井上潤

Researcher Number	10596779
Other IDs
Affiliation (Current)	2023: 東京大学, 大気海洋研究所, 准教授
Affiliation (based on the past Project Information) *help	2023: 東京大学, 大気海洋研究所, 准教授 2020 – 2022: 東京大学, 大気海洋研究所, 助教 2019: 国立遺伝学研究所, ゲノム・進化研究系, 特任准教授 2017 – 2018: 沖縄科学技術大学院大学, マリンゲノミックスユニット, 研究員 2016: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員 … More 2015: 沖縄科学技術大学院大学, Mathematical Biology, スタッフサイエンティスト 2015: 沖縄科学技術大学院大学, Mathematical Biology, 研究員 2013 – 2014: 沖縄科学技術大学院大学, 数理生物学ユニット, 研究員 2012: 東京大学, 大気海洋研究所, 研究員 Less
Review Section/Research Field	Principal Investigator Biodiversity/Systematics / Evolutionary biology / Basic Section 45030:Biodiversity and systematics-related / Medium-sized Section 63:Environmental analyses and evaluation and related fields
Keywords	Principal Investigator 真骨魚類 / 解析パイプライン / 分子系統解析 / 全ゲノム重複 / 分子系統 / 真骨類 / Web tool / ゲノム比較 / 左右相称動物 / 脊索動物の起源 … More / オーソログ / web tool / 比較ゲノム / シンテニー / ゲノム進化 / 系統解析 / シンテニー解析 / 全タンパク質遺伝子解析パイプライン / トランスクリプトームデータ / 遊泳性尾索動物 / トランスクリプトームデータ。 / 全タンパク質遺伝子解析パイプライン。 / 全タンパク質遺伝子解読 / オタマボヤ / ゲノム系統解析 / 尾索類 / 遺伝子系統樹 / トランスクリプトーム / 脊索動物 / 環境 DNA / トカラ海峡 / 海洋生物分布マップ Less

A move for sea subtropicalization: development of a marine organism map by environmental DNA analysesPrincipal Investigator
- Principal Investigator
  
  井上潤
- Project Period (FY)
  2021 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 63:Environmental analyses and evaluation and related fields
- Research Institution
  The University of Tokyo
核ゲノム解析による進化速度の速い種の系統的位置決定：尾索動物オタマボヤ類を例にPrincipal Investigator
- Principal Investigator
  
  井上潤
- Project Period (FY)
  2018 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  The University of Tokyo
  National Institute of Genetics
  Okinawa Institute of Science and Technology Graduate University
Development of an integrated pipeline of ortholog identification for comparative genome analyses of vertebratesPrincipal Investigator
- Principal Investigator
  
  Inoue Jun
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Evolutionary biology
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
Resolving ray-finned fish phylogeny with genomic data: Developing an analysis pipeline for identification of homologous genesPrincipal Investigator
- Principal Investigator
  
  Inoue Jun
- Project Period (FY)
  2012 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  Okinawa Institute of Science and Technology Graduate University
  The University of Tokyo

All 2021 2020 2019 2018 2017 2015 2014 2013 2012

All Journal Article Presentation Book

[Book] 魚類学の百科事典2018
- Author(s)
  井上潤
- Publisher
  丸善出版
- Data Source
  KAKENHI-PROJECT-15K07172
[Journal Article] A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum2021
- Author(s)
  Satoh Noriyuki、Tominaga Hitoshi、Kiyomoto Masato、Hisata Kanako、Inoue Jun、Nishitsuji Koki
- Journal Title
  
  Frontiers in Cell and Developmental Biology
  
  Volume: 9 Pages: 1-16
- DOI
  10.3389/fcell.2021.696875
- Data Source
  KAKENHI-PROJECT-18K06396
[Journal Article] Commentary on ORTHOSCOPE: a web tool for genome comparisons.2021
- Author(s)
  Inoue, J.
- Journal Title
  
  Journal of Genetics and Genomes
  
  Volume: 5 Pages: 1-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396
[Journal Article] ORTHOSCOPE*: A Phylogenetic Pipeline to Infer Gene Histories from Genome-Wide Data2021
- Author(s)
  Inoue Jun
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 39 Issue: 1 Pages: 1-10
- DOI
  10.1093/molbev/msab301
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396
[Journal Article] Novel Mitochondrial DNA Markers for Scleractinian Corals and Generic-Level Environmental DNA Metabarcoding2021
- Author(s)
  Shinzato Chuya、Narisoko Haruhi、Nishitsuji Koki、Nagata Tomofumi、Satoh Noriyuki、Inoue Jun
- Journal Title
  
  Frontiers in Marine Science
  
  Volume: 8 Pages: 1-9
- DOI
  10.3389/fmars.2021.758207
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21860
[Journal Article] An Investigation into the Genetic History of Japanese Populations of Three Starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, Based on Complete Mitochondrial DNA Sequences2020
- Author(s)
  Inoue Jun、Hisata Kanako、Yasuda Nina、Satoh Noriyuki
- Journal Title
  
  G3&#58; Genes|Genomes|Genetics
  
  Volume: 10 Issue: 7 Pages: 2519-2528
- DOI
  10.1534/g3.120.401155
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-17H04996
[Journal Article] Identification of ancient viruses from metagenomic data of the Jomon people2020
- Author(s)
  Nishimura Luca、Sugimoto Ryota、Inoue Jun、Nakaoka Hirofumi、Kanzawa-Kiriyama Hideaki、Shinoda Ken-ichi、Inoue Ituro
- Journal Title
  
  Journal of Human Genetics
  
  Volume: 66 Issue: 3 Pages: 287-296
- DOI
  10.1038/s10038-020-00841-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21405, KAKENHI-PLANNED-18H05507
[Journal Article] Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer2020
- Author(s)
  Kun-Lung Li, Keisuke Nakashima, Jun Inoue, and Noriyuki Satoh
- Journal Title
  
  Genes
  
  Volume: 11 Issue: 8 Pages: 937-937
- DOI
  10.3390/genes11080937
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06142, KAKENHI-PROJECT-18K06396
[Journal Article] Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes2020
- Author(s)
  Shinzato Chuya、Khalturin Konstantin、Inoue Jun、Zayasu Yuna、Kanda Miyuki、Kawamitsu Mayumi、Yoshioka Yuki、Yamashita Hiroshi、Suzuki Go、Satoh Noriyuki
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 38 Issue: 1 Pages: 16-30
- DOI
  10.1093/molbev/msaa216
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-20K21860, KAKENHI-PROJECT-18H02270, KAKENHI-PROJECT-17K07949, KAKENHI-PROJECT-17K15179, KAKENHI-PROJECT-20H03235, KAKENHI-PROJECT-17KT0027
[Journal Article] dbCNS: A New Database for Conserved Noncoding Sequences2020
- Author(s)
  Inoue Jun、Saitou Naruya
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 38 Issue: 4 Pages: 1665-1676
- DOI
  10.1093/molbev/msaa296
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396
[Journal Article] ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes2019
- Author(s)
  Jun Inoue, Keisuke Nakashima, and Noriyuki Satoh
- Journal Title
  
  Genes
  
  Volume: 10 Issue: 4 Pages: 1-9
- DOI
  10.3390/genes10040294
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06142, KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824
[Journal Article] Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides2019
- Author(s)
  Akira Shiraishi, Toshimi Okuda, Natsuko Miyasaka, Tomohiro Osugi, Yasushi Okuno, Jun Inoue, and Honoo Satake
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 116 (16) Issue: 16 Pages: 7847-7856
- DOI
  10.1073/pnas.1816640116
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14687, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K07430, KAKENHI-PROJECT-19K06752
[Journal Article] Deuterostome genomics: Lineage-specific protein expansions that enabled chordate muscle evolution.2018
- Author(s)
  Inoue, J., Satoh, N.
- Journal Title
  
  Molecular Biology and Evolution.
  
  Volume: 35 Issue: 4 Pages: 914-924
- DOI
  10.1093/molbev/msy002
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16H04824
[Journal Article] ORTHOSCOPE: An Automatic Web Tool for Phylogenetically Inferring Bilaterian Orthogroups with User-Selected Taxa2018
- Author(s)
  Inoue Jun、Satoh Noriyuki
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: 36 Issue: 3 Pages: 621-631
- DOI
  10.1093/molbev/msy226
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06396, KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-15K07172
[Journal Article] The chordate ancestor possessed a single copy of the Brachyury gene for notochord aquisition2017
- Author(s)
  Inoue, J., Yasuoka, Y., Takahashi, H. Satoh, N.
- Journal Title
  
  Zoological Letters
  
  Volume: 3 Issue: 1 Pages: 4-4
- DOI
  10.1186/s40851-017-0064-9
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04824, KAKENHI-PROJECT-26650087, KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-16K21559, KAKENHI-PROJECT-15K07174
[Journal Article] Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling2015
- Author(s)
  Inoue, J., Sato, Y., Sinclair, R., Tsukamoto, T., and Nishida, M.
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 112 Issue: 48 Pages: 14918-14923
- DOI
  10.1073/pnas.1507669112
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K07172, KAKENHI-PROJECT-24770070
[Presentation] dbCNS: a new database for conserved non-coding sequencess2021
- Author(s)
  Inoue, J.
- Organizer
  Genome Concept Centennial Symposium
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] Using dbCNS, a database of conserved noncoding sequences2021
- Author(s)
  井上潤
- Organizer
  遺伝研共同研究会「日本列島人の起源と成立をゲノム情報から探る」
- Invited
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] dbCNS: 進化的に保存された非コード配列の新たなデータベース2021
- Author(s)
  井上潤、斎藤成也
- Organizer
  日本動物学会オンライン米子大会
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] 脊椎動物の頭部筋肉に特異的なミオシン重鎖遺伝子MYH16 の起源と進化2020
- Author(s)
  西野純子、井上潤、神田真司、西野敦雄
- Organizer
  日本動物学会・東北支部大会
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] 縄文人由来 DNA を用いた古代微生物の配列解析2020
- Author(s)
  西村瑠佳、杉本竜太、井上潤、中岡博史、神澤秀明、篠田謙一、井ノ上逸郎
- Organizer
  日本進化学会
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018
- Author(s)
  井上潤，佐藤矩行
- Organizer
  日本動物学会第89 回大会 (代替)
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] 種の系統樹に基づいて左右相称動物のオーソログを判定するウェブツールの開発．2018
- Author(s)
  井上潤，佐藤矩行．
- Organizer
  日本動物学会第89 回大会 (代替)
- Data Source
  KAKENHI-PROJECT-18K06396
[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定．2015
- Author(s)
  井上潤，佐藤行人，シンクレアロバート，塚本勝巳，西田睦．
- Organizer
  日本進化学会年会
- Place of Presentation
  中央大学，東京．
- Year and Date
  2015-08-20
- Invited
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] 全ゲノム重複と種の系統樹を考慮した系統解析マーカ遺伝子の選定2015
- Author(s)
  井上潤，佐藤行人，シンクレアロバート，塚本勝巳，西田睦
- Organizer
  日本進化学会年会
- Place of Presentation
  中央大学，東京
- Year and Date
  2015-08-20
- Invited
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree2015
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Introduction to the analysis of molecular evolution in the genomic era.
- Place of Presentation
  Fudan University, Shanghai
- Year and Date
  2015-11-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] Identification of phylogenetic marker gene considering whole genome duplication and species tree.2015
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Introduction to the analysis of molecular evolution in the genomic era
- Place of Presentation
  Fudan University, Shanghai
- Year and Date
  2015-11-06
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K07172
[Presentation] Selecting molecular markers from transcriptome data for fish phylogenetics.2014
- Author(s)
  Inoue J., Sato, Y., Sinclair, R., Nishida, M.
- Organizer
  Workshop on Methods for Biodiversity Research,
- Place of Presentation
  Fudan Univ., Shanghai
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] 脊椎動物 3 億年のゲノム進化：ゲノム重複に由来する遺伝子の保持と進化に寄与した自然選択項の検出．2013
- Author(s)
  井上潤，佐藤行人，西田睦．
- Organizer
  日本進化学会
- Place of Presentation
  筑波大学
- Data Source
  KAKENHI-PROJECT-24770070
[Presentation] 真骨魚類ゲノムの進化特性: トランスクリプトーム相同遺伝子データベースの構築．2012
- Author(s)
  井上潤
- Organizer
  日本進化学会年会
- Place of Presentation
  首都大学東京
- Data Source
  KAKENHI-PROJECT-24770070

1. NISHIDA Mutsumi (90136896)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
2. TSUKAMOTO Katsumi (10090474)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
3. SINCLAIR Robert (50423744)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. SATO Yukuto (20566418)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
5. SATOH Noriyuki (30025481)

# of Collaborated Projects: 1 results

# of Collaborated Products: 6 results
6. 西野敦雄 (50343116)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. 兵藤晋 (40222244)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 新里宙也 (70524726)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 伊藤幸彦 (80345058)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. NAKASHIMA Keisuke

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
11. ROBERT Sinclair

# of Collaborated Projects: 0 results

# of Collaborated Products: 3 results
12. 白石慧

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Inoue Jun 井上 潤

Research Projects

Research Products

Co-Researchers

A move for sea subtropicalization: development of a marine organism map by environmental DNA analysesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

核ゲノム解析による進化速度の速い種の系統的位置決定：尾索動物オタマボヤ類を例にPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of an integrated pipeline of ortholog identification for comparative genome analyses of vertebratesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Resolving ray-finned fish phylogeny with genomic data: Developing an analysis pipeline for identification of homologous genesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] 魚類学の百科事典2018

Author(s)

Publisher

Data Source

[Journal Article] A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Commentary on ORTHOSCOPE: a web tool for genome comparisons.2021

Author(s)

Journal Title

Data Source

[Journal Article] ORTHOSCOPE*: A Phylogenetic Pipeline to Infer Gene Histories from Genome-Wide Data2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Novel Mitochondrial DNA Markers for Scleractinian Corals and Generic-Level Environmental DNA Metabarcoding2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] An Investigation into the Genetic History of Japanese Populations of Three Starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, Based on Complete Mitochondrial DNA Sequences2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Identification of ancient viruses from metagenomic data of the Jomon people2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] dbCNS: A New Database for Conserved Noncoding Sequences2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but Not in Other Animal Genomes2019

Author(s)

Journal Title

DOI

Inoue Jun 井上潤