Nishimura Yuki 西村祐貴

Researcher Number	20783012
Other IDs
Affiliation (Current)	2026: 東京大学, 大学院新領域創成科学研究科, 助教
Affiliation (based on the past Project Information) *help	2022 – 2025: 東京大学, 大学院新領域創成科学研究科, 助教 2020: 東京大学, 大学院理学系研究科(理学部), 特任助教 2018 – 2019: 国立研究開発法人理化学研究所, バイオリソース研究センター, 特別研究員 2016 – 2017: 国立研究開発法人理化学研究所, バイオリソースセンター, 特別研究員
Review Section/Research Field	Principal Investigator Complex systems / Basic Section 45030:Biodiversity and systematics-related / Evolutionary biology Except Principal Investigator Basic Section 27040:Biofunction and bioprocess engineering-related
Keywords	Principal Investigator 有中心粒太陽虫類 / ミトコンドリアゲノム / メタゲノム / 未培養微生物 / 微生物ダークマター / メタゲノム解析 / DPANN / CPR / 有孔虫類 / C-to-U型RNAエディティング … More / PPRタンパク質 / DYWドメイン / RNAエディティング / ネコブカビ類 / DYW型PPRタンパク質 / C-to-U RNAエディティング / 転写後修飾 / 転移性イントロン / eukaryogenesis / スプライソソーム / ミトコンドリア / グループIイントロン / カタブレファリス類 / スプライソソーマルイントロン / グループIIイントロン … More Except Principal Investigator CRISPR/Casシステム / Vibrio natriegens / ファージ防御機構 / スーパーコンピュータ / 空間的オミックス解析 / エピゲノム / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / メタゲノム / バイオインフォマティクス / 空間解析 / シングルセル解析 / オミックス解析 / ゲノム Less

Functional elucidation of a gene cluster exclusively associated with the CRISPR/Cas system
- Principal Investigator
  
  石川聖人
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 27040:Biofunction and bioprocess engineering-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
未培養系統群CPR/DPANNが優占する生態系のポストコッホ解析Principal Investigator
- Principal Investigator
  
  西村祐貴
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
The distribution and evolution of C-to-U RNA editing in mitochondriaPrincipal Investigator
- Principal Investigator
  
  Nishimura Yuki
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  The University of Tokyo
  Institute of Physical and Chemical Research
Study on spliceosomal intron evolution through inspecting mitochondrial intronsPrincipal Investigator
- Principal Investigator
  
  Nishimura Yuki
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Evolutionary biology
- Research Institution
  Institute of Physical and Chemical Research

All 2025 2024 2023 2022 2020 2019 2018 2017 2016 Other

All Journal Article Presentation Book Other

[Book] Pythonで実践　生命科学データの機械学習2023
- Author(s)
  西村祐貴、綿野桂人、岩崎渉
- Total Pages
  445
- Publisher
  羊土社
- ISBN
  9784758122634
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Journal Article] In-depth functional analysis of BRD9 in fetal hematopoiesis reveals context-dependent roles2025
- Author(s)
  Zhang Yifan、Nomura Masaki、Nishimura Koutarou、Zang Weijia、Koike Yui、Xiao Muran、Ito Hiromi、Fukumoto Miki、Tanaka Atsushi、Aoyama Yumi、Saika Wataru、Hasegawa Chihiro、Yamazaki Hiromi、Takaori-Kondo Akifumi、Inoue Daichi
- Journal Title
  
  iScience
  
  Volume: 28 Issue: 3 Pages: 112010-112010
- DOI
  10.1016/j.isci.2025.112010
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-24H00866, KAKENHI-PROJECT-21K08432, KAKENHI-PROJECT-22KJ3215, KAKENHI-PROJECT-23K07824, KAKENHI-PROJECT-24K21298, KAKENHI-PROJECT-24K22138, KAKENHI-PROJECT-24KJ2241
[Journal Article] Selenoprotein-mediated redox regulation shapes the cell fate of HSCs and mature lineages2025
- Author(s)
  Aoyama Yumi、Yamazaki Hiromi、Nishimura Koutarou、Nomura Masaki、Shigehiro Tsukasa、、、、Ikawa Tomokatsu、Takaori-Kondo Akifumi、Inoue Daichi
- Journal Title
  
  Blood
  
  Volume: 145 Issue: 11 Pages: 1149-1163
- DOI
  10.1182/blood.2024025402
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-24H00866, KAKENHI-PROJECT-21K08432, KAKENHI-PROJECT-22K06876, KAKENHI-PROJECT-23K15308, KAKENHI-PROJECT-22KJ1980, KAKENHI-PROJECT-22KJ3215, KAKENHI-PROJECT-23K07824, KAKENHI-PROJECT-24K21298, KAKENHI-PROJECT-24K22138, KAKENHI-PROJECT-24KJ2241
[Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024
- Author(s)
  Nishimura, L., Tanino, A., Ajimoto, M., Katsumura, T., Ogawa, M., Koganebuchi, K., Waku, D., Kumagai, M., Sugimoto, R., Nakaoka, H., Oota, H., & Inoue, I.
- Journal Title
  
  PloS one
  
  Volume: 19(1) Issue: 1 Pages: 0295924-0295924
- DOI
  10.1371/journal.pone.0295924
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K13141, KAKENHI-PROJECT-23KF0206, KAKENHI-PROJECT-21K00996, KAKENHI-PROJECT-22KF0092, KAKENHI-PROJECT-22KJ1416, KAKENHI-PROJECT-21H00605, KAKENHI-PLANNED-19H05737, KAKENHI-PROJECT-22H00020, KAKENHI-PROJECT-23K21990
[Journal Article] Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation2024
- Author(s)
  Yamasaki Takaya、Nishiyama Akira、Kurogi Nagomi、Nishimura Koutarou、Nishida Shion、Kurotaki Daisuke、Ban Tatsuma、Ramilowski Jordan A.、Ozato Keiko、Toyoda Atsushi、Tamura Tomohiko
- Journal Title
  
  Cell Reports
  
  Volume: 43 Issue: 4 Pages: 114107-114107
- DOI
  10.1016/j.celrep.2024.114107
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18129, KAKENHI-PROJECT-21H02954
[Journal Article] Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila2024
- Author(s)
  Kato Shingo、Tahara Yuhei O.、Nishimura Yuki、Uematsu Katsuyuki、Arai Takahiro、Nakane Daisuke、Ihara Ayaka、Nishizaka Takayuki、Iwasaki Wataru、Itoh Takashi、Miyata Makoto、Ohkuma Moriya
- Journal Title
  
  Journal of Bacteriology
  
  Volume: 206 Issue: 2
- DOI
  10.1128/jb.00351-23
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19141, KAKENHI-PROJECT-21K07020, KAKENHI-PLANNED-19H05689, KAKENHI-PUBLICLY-22H04881, KAKENHI-ORGANIZER-22H05065, KAKENHI-PLANNED-22H05066, KAKENHI-PROJECT-23K23853
[Journal Article] Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae2024
- Author(s)
  Tominaga Kento、Ozaki Shogo、Sato Shohei、Katayama Tsutomu、Nishimura Yuki、Omae Kimiho、Iwasaki Wataru
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 121 Issue: 19 Pages: 1-12
- DOI
  10.1073/pnas.2317954121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K19343, KAKENHI-PROJECT-23K27131, KAKENHI-PROJECT-23K05640, KAKENHI-PROJECT-24K18098
[Journal Article] FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters2023
- Author(s)
  Li Mengjiao、Nishimura Tatsunori、Takeuchi Yasuto、Hongu Tsunaki、Wang Yuming、Hirose Haruka、Nomura Seitaro、Suzuki Yutaka、Okamoto Koji、Gotoh Noriko (et al. 22)
- Journal Title
  
  Journal of Clinical Investigation
  
  Volume: 133 Issue: 22 Pages: 1-19
- DOI
  10.1172/jci166666
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18237, KAKENHI-PROJECT-21K15501, KAKENHI-PROJECT-22K07037, KAKENHI-PROJECT-23K06610, KAKENHI-PROJECT-23K06630, KAKENHI-PROJECT-22K20818, KAKENHI-PROJECT-21H05045, KAKENHI-PROJECT-21H02761, KAKENHI-PROJECT-21H03081, KAKENHI-PROJECT-22H00471
[Journal Article] BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state2023
- Author(s)
  Xiao Muran、、、、Yokoyama Akihiko、、、、、Inoue Daichi
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 1-22
- DOI
  10.1038/s41467-023-44081-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KK0119, KAKENHI-PROJECT-21K08385, KAKENHI-PROJECT-20H03717, KAKENHI-PROJECT-22H00455, KAKENHI-PROJECT-23K24368
[Journal Article] Squalomix: shark and ray genome analysis consortium and its data sharing platform2022
- Author(s)
  Nishimura Osamu、Sakamoto Tatsuya、Semba Yasuko、Yamauchi Shinya、Yamada Kazuyuki、Nishida Kiyonori、Kiyatake Itsuki、Sato Keiichi、Hyodo Susumu、Kadota Mitsutaka、Uno Yoshinobu、Kuraku Shigehiro
- Journal Title
  
  F1000Research
  
  Volume: 11 Pages: 1077-1077
- DOI
  10.12688/f1000research.123591.1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K19312, KAKENHI-PROJECT-20H03269, KAKENHI-PROJECT-20J22659, KAKENHI-PROJECT-22KJ2901, KAKENHI-PROJECT-22K15088, KAKENHI-PUBLICLY-21H00428, KAKENHI-PROJECT-23K21320
[Journal Article] Repeated translocation of a supergene underlying rapid sex chromosome turnover in <i>Takifugu</i> pufferfish2022
- Author(s)
  Kabir Ahammad、Ieda Risa、Hosoya Sho、Fujikawa Daigaku、Atsumi Kazufumi、Tajima Shota、Nozawa Aoi、Koyama Takashi、Hirase Shotaro、Nakamura Osamu、Kadota Mitsutaka、Nishimura Osamu、Kuraku Shigehiro、Nakamura Yasukazu、Kobayashi Hisato、Toyoda Atsushi、Tasumi Satoshi、Kikuchi Kiyoshi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 23 Pages: 1901-1909
- DOI
  10.1073/pnas.2121469119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05833, KAKENHI-PROJECT-23K21282, KAKENHI-PROJECT-22H00377
[Journal Article] Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes2022
- Author(s)
  Yazaki Euki、Yabuki Akinori、Nishimura Yuki、Shiratori Takashi、Hashimoto Tetsuo、Inagaki Yuji
- Journal Title
  
  Frontiers in Ecology and Evolution
  
  Volume: 10 Pages: 1030570-1030570
- DOI
  10.3389/fevo.2022.1030570
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06792, KAKENHI-PROJECT-18KK0203, KAKENHI-PUBLICLY-22H04881
[Journal Article] Division of functional roles for termite gut protists revealed by single-cell transcriptomes2020
- Author(s)
  Nishimura Yuki、Otagiri Masato、Yuki Masahiro、Shimizu Michiru、Inoue Jun-ichi、Moriya Shigeharu、Ohkuma Moriya
- Journal Title
  
  The ISME Journal
  
  Volume: 14 Issue: 10 Pages: 2449-2460
- DOI
  10.1038/s41396-020-0698-z
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-19H05689, KAKENHI-PROJECT-17H01447, KAKENHI-PROJECT-18K14783
[Journal Article] Mitochondrial Genomes of Hemiarma marina and Leucocryptos marina Revised the Evolution of Cytochrome c Maturation in Cryptista2020
- Author(s)
  Nishimura Yuki、Kume Keitaro、Sonehara Keito、Tanifuji Goro、Shiratori Takashi、Ishida Ken-ichiro、Hashimoto Tetsuo、Inagaki Yuji、Ohkuma Moriya
- Journal Title
  
  Frontiers in Ecology and Evolution
  
  Volume: 8 Pages: 140-140
- DOI
  10.3389/fevo.2020.00140
- NAID
  120007132656
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KK0203, KAKENHI-PLANNED-19H05689, KAKENHI-PROJECT-18K14783
[Journal Article] Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.2019
- Author(s)
  Yuki Nishimura, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Moriya Ohkuma, Yuji Inagaki
- Journal Title
  
  Scientific Reports
  
  Volume: 9 Issue: 1 Pages: 4850-4850
- DOI
  10.1038/s41598-019-41238-6
- NAID
  120007128095
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14783, KAKENHI-PROJECT-18KK0203, KAKENHI-PROJECT-16H04826, KAKENHI-PROJECT-17H01447
[Journal Article] Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus2018
- Author(s)
  Yuki Masahiro、Sakamoto Mitsuo、Nishimura Yuki、Ohkuma Moriya
- Journal Title
  
  International Journal of Systematic and Evolutionary Microbiology
  
  Volume: 68 Issue: 2 Pages: 596-601
- DOI
  10.1099/ijsem.0.002549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17H01447, KAKENHI-PROJECT-16H07451
[Journal Article] Mitochondrial genome of Palpitomonas bilix: derived genome structure and ancestral system for cytochrome c maturation2016
- Author(s)
  Nishimura Y, Tanifuji G, Kamikawa R, Yabuki A, Hashimoto T, Inagaki Y
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 8 Issue: 10 Pages: 3090-3098
- DOI
  10.1093/gbe/evw217
- NAID
  120007129285
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H05231, KAKENHI-WRAPUP-16H01703, KAKENHI-PROJECT-15H05606, KAKENHI-PROJECT-16H07451, KAKENHI-PROJECT-26840123, KAKENHI-PROJECT-15K14591, KAKENHI-PROJECT-16H04826
[Presentation] 進化時間と祖先状態推定に基づき共進化・対偶遺伝子ペアを検出する新規系統プロファイリング法の開発2024
- Author(s)
  西村祐貴、大前公保、富永賢人、岩崎渉
- Organizer
  第18回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] CRISPR-Cas systemを持たない微生物に集積されている機能未知ドメインの解析2023
- Author(s)
  西村祐貴、石川聖人、大前公保、富永賢人、安田梨乃、岩崎渉
- Organizer
  第17回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] ハイブリッドメタゲノム解析によるCPR/DPANNの宿主推定2023
- Author(s)
  西村祐貴
- Organizer
  第35回日本Archaea研究会講演会
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] Seasonal abundance variation of groundwater microbiome dominated by phylum Patescibacteria2023
- Author(s)
  Yuki Nishimura, Kimiho Omae, Kento Tominaga, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Wataru Iwasaki
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] Estimation of CPR hosts based on horizontal gene transfers identified by high-quality genomes / 高品質ゲノムから検出された遺伝子水平伝播に基づくCPRの宿主推定2023
- Author(s)
  Yuna Nakagawa, Yuki Nishimura, Kimiho Omae, Kento Tominaga, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Wataru Iwasaki
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] 網羅的な遺伝子水平伝播の検出によるCPR/DPANN宿主予測の試み2022
- Author(s)
  西村祐貴、大前公保、富永賢人、増田幸子、柴田ありさ、白須賢、岩崎渉
- Organizer
  日本微生物生態学会第35回大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] ファージ防衛機構を欠く細菌の代替戦略を対偶遺伝学で探る2022
- Author(s)
  西村祐貴
- Organizer
  2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会（IIBMP2022）
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] ヤマトシロアリ腸内に共生する原生生物の多様性と機能の解析2019
- Author(s)
  西村祐貴、佐藤渚、大熊盛也
- Organizer
  日本微生物生態学会第33回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 難培養性原生生物におけるシングルセルトランスクリプトーム:シロアリ共生原生生物をモデルとして2019
- Author(s)
  西村祐貴、小田切正人、雪真弘、守屋繁春、大熊盛也
- Organizer
  第13回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 日本進化学会第21回大会2019
- Author(s)
  西村祐貴、佐藤渚、石谷佳之、白鳥峻志、石田健一郎、橋本哲男、稲垣祐司, 大熊盛也
- Organizer
  Distribution of plant-type mitochondrial C-to-U RNA editing in diverse eukaryotes
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの比較解析2019
- Author(s)
  西村祐貴,　佐藤渚, 白鳥峻志, 石田健一郎, 橋本哲男, 稲垣祐司, 大熊盛也
- Organizer
  日本微生物資源学会第26回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Re-exploration of the protein performing plant-type C-to-U RNA editing in diverse2019
- Author(s)
  Yuki Nishimura, Nagisa Sato, Yoshiyuki Ishitani, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki, Moriya Ohkuma
- Organizer
  The 14th International Colloquim in Endocytobiology and Symbiosis
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Single cell transcriptome analyses of the symbiotic protists in termite gut2018
- Author(s)
  Yuki Nishimura, Masato Otagiri, Masahiro Yuki, Michiru Shimizu, Nagisa Sato, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  日本微生物生態学会第32回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] シロアリ腸内から分離された新規乳酸菌、Lactococcus reticulitermitis2018
- Author(s)
  雪真弘、坂本光央、西村祐貴、大熊盛也
- Organizer
  日本微生物資源学会第25回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの解析2018
- Author(s)
  西村祐貴、白鳥峻志、石田健一郎、橋本哲男、稲垣祐司
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Single cell transcriptome analyses of the symbiotic protists in wood-feeding termites2018
- Author(s)
  Yuki Nishimura, Masato Otagiri, Masahiro Yuki, Michiru Shimizu, Nagisa Sato, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  17th International Symposium on Microbial Ecology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] シングルセルゲノム・トランスクリプトームによるシロアリ共生微生物の機能解析2018
- Author(s)
  西村祐貴
- Organizer
  つくば藻類・プロティストフォーラム
- Invited
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Orphan protistology, accelerating in JAPAN2018
- Author(s)
  Takashi Shiratori, Akinori Yabuki, Euki Yazaki, Yuki Nishimura, Moriya Ohkuma, Katsunori Fujikura, Tetsuo Hashimoto, Yuji Inagaki, Ken-ichiro Ishida
- Organizer
  Joint Meeting of the Japan Society of Protistology and the Korean Society of Protozoologists
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] ゲノムデータに基づくTrichosporonales目の系統解析2017
- Author(s)
  高島昌子、Sira Sriswasdi、西村祐貴、眞鍋理一郎、杉田隆、遠藤力也、岩崎渉、大熊盛也
- Organizer
  第11回日本ゲノム微生物学会年会
- Place of Presentation
  慶応大学
- Year and Date
  2017-03-02
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Molecular tinkering in the evolution of the membrane attachment mechanisms of the Rheg GTPase2017
- Author(s)
  Kristina Zahonova, Romana Petrzelkova , Euki Yazaki, Yuki Nishimura, Matus Valach, Stepanka Hrda, Vladimir Klimes, Yuji Inagaki, Gertraud Burger, Vladimir Hampl, Vyacheslav Yurchenko, Marek Elias
- Organizer
  15 th International Congress of Protistology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームによりシロアリ腸内原生生物の一種がキチン分解を通して効率的な窒素の利用に資することが示された2017
- Author(s)
  西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
- Organizer
  第50回日本原生生物学会大会&第1回日本共生生物学会大会合同大会
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] ハイブリッドゲノムも包含する真菌のゲノム分類: 多様な表現型を有するTrichosporonales目の特性解析2017
- Author(s)
  高島昌子、Sira Sriwasdi、杉田隆、西村祐貴、遠藤力也、大熊盛也、岩崎渉、眞鍋理一郎
- Organizer
  環境微生物系合同大会2017
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Single cell transcriptomes of the symbiotic protists in the wood-feeding termites gut suggest that chitin degradation is assigned to a symbiotic species2017
- Author(s)
  Yuki Nishimura, Masato Otagiri, Yuki Masahiro, Jun-ichi Inoue, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  15 th International Congress of Protistology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2017
- Author(s)
  西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
- Organizer
  環境生物系合同大会2017
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] 真核生物における光合成生物の多様性とオルガネラ進化2016
- Author(s)
  西村祐貴
- Organizer
  第12回新産業酵母研究会講演会
- Place of Presentation
  産業技術研究所臨海副都心センター
- Invited
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2016
- Author(s)
  西村祐貴、小田切正人、雪真弘、守屋繁春、大熊盛也
- Organizer
  日本微生物生態学会第31回横須賀大会
- Place of Presentation
  横須賀市文化会館
- Year and Date
  2016-10-23
- Data Source
  KAKENHI-PROJECT-16H07451
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]

1. 黒川顕 (20343246)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. 川嶋実苗 (00396706)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. 豊田敦 (10267495)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. 鈴木穣 (40323646)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. 中村保一 (60370920)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 野口英樹 (50333349)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 森宙史 (40610837)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. Frith Martin (40462832)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 森下真一 (90292854)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 浅井潔 (30356357)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 笠原雅弘 (60376605)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 波江野洋 (70706754)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 伊藤武彦 (90501106)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 山田拓司 (10437262)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 高橋弘喜 (60548460)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 浜田道昭 (00596538)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 瀬々潤 (40361539)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 平川英樹 (80372746)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 島村徹平 (00623943)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 熊谷雄太郎 (00528408)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 三井純 (70579862)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 中谷明弘 (60301149)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 林哲也 (10173014)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 岩崎渉 (50545019)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. 石川聖人 (70750602)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. OHKUMA MORIYA

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
27. KATO Shingo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
28. INAGAKI Yuji

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
29. YOSHIDA Hitoshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
30. 小金渕佳江

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
31. 井上大地

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
32. ラミロフスキージョーダン

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
33. 田村智彦

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
34. 西山晃

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
35. 坂本竜哉

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
36. 坂本浩隆

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
37. 大前公保

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
38. 後藤典子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
39. 小山喬

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
40. 橋本哲男

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
41. 矢吹彬憲

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
42. 白鳥峻志

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Nishimura Yuki 西村 祐貴

Research Projects

Research Products

Co-Researchers

Functional elucidation of a gene cluster exclusively associated with the CRISPR/Cas system

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

未培養系統群CPR/DPANNが優占する生態系のポストコッホ解析Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Platform for Advanced Genome Science

Principal Investigator

Project Period (FY)

Research Category

Research Institution

The distribution and evolution of C-to-U RNA editing in mitochondriaPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Study on spliceosomal intron evolution through inspecting mitochondrial intronsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Pythonで実践 生命科学データの機械学習2023

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] In-depth functional analysis of BRD9 in fetal hematopoiesis reveals context-dependent roles2025

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Selenoprotein-mediated redox regulation shapes the cell fate of HSCs and mature lineages2025

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Squalomix: shark and ray genome analysis consortium and its data sharing platform2022

Nishimura Yuki 西村祐貴

[Book] Pythonで実践　生命科学データの機械学習2023