TOYODA Tetsuro 豊田哲郎

Researcher Number	20342818
Affiliation (based on the past Project Information) *help	2010 – 2011: 独立行政法人理化学研究所, 生命情報基盤研究部門, 部門長 2008: 独立行政法人理化学研究所, 生命情報基盤研究部門, 部門長
Review Section/Research Field	Except Principal Investigator Plant molecular biology/Plant physiology / Laboratory animal science / Bioinformatics/Life informatics
Keywords	Except Principal Investigator シロイヌナズナ / 非翻訳性RNA / タイリングアレイ解析 / small RNA / 環境ストレス応答 / RNA制御 / RNA-dependent RNA polymerase / アンチセンスRNA / 非翻訳型RNA / 発現制御 … More / ストレス / ゲノム / 植物 / SOP / 国際標準化 / 生殖工学技術 / マウスクリニック / マウス / 動物飼育管理 / 実験手順 / プロトコル / データベース / 標準化 / 表現型解析 / 変異体スクリーニング / 形態形質 / in silico / トライコーム / 3次元形状計測 / μX線CT / bioluminescence / Luciferase reporter / digital in situ hybridization / time-lapse images / 標準形状モデル / スクリーニング / 変異体 / バイオインフォマティクス Less

Analysis of stress-responsive non-coding antisense RNAs that are co-expressed with sense RNAs
- Principal Investigator
  
  SEKI Motoaki
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  The Institute of Physical and Chemical Research
Development of database for international sharing of fundamental information on mouse phenotypic analyses
- Principal Investigator
  
  WAKANA Shigeharu
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Laboratory animal science
- Research Institution
  The Institute of Physical and Chemical Research
Constructing morphological template models of Arabidopsis thaliana for computational mutant screening
- Principal Investigator
  
  KAMINUMA Eli
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The Institute of Physical and Chemical Research

All 2012 2011 2010 2009 2008

All Journal Article Presentation Book

[Book] Arabidopsis tiling array analysis to identify the stress-responsive genes. In "Methods in Molecular Biology-Plant Stress Tolerance(Edited by Dr. Ramanjulu Sunkar)"2010
- Author(s)
  Matsui, A., Ishida, J., Morosawa, T., Okamoto, M., Kim, J. M., Kurihara, Y., Kawashima, M., Tanaka, M., To, T., Nakaminami, K., Kaminuma, E., Endo, T., Mochizuki, Y., Kawaguchi, S., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M.
- Publisher
  Humana Press
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012
- Author(s)
  Kawaguchi, S., Iida, K., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Shinozaki, K., Seki, M. and Toyoda, T.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Pages: 929-937
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] Surveillance of 3' non-coding transcripts requires FIERY1 and XRN3 in Arabidopsis2012
- Author(s)
  Kurihara, Y., Schmitz, R. J., Nery, J. R., Schultz, M. D., Okubo-Kurihara, E., Morosawa, T., Tanaka, M., Toyoda, T., Seki, M. and Ecker, J. R.
- Volume
  G3 2
- Pages
  487-498
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] ARTADE2DB : Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression(DSDE) Analyses2011
- Author(s)
  Iida, K., Kawaguchi, S., Kobayashi, N., Yoshida, Y., Ishii, M., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Seki, M. and Toyoda, T.
- Journal Title
  
  Plant Cell Physiol
  
  Volume: 52 Pages: 254-264
- NAID
  10029708540
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570056
[Journal Article] The RIKEN integrated database of mammals2010
- Author(s)
  Masuya H., Wakana S., Toyoda T
- Journal Title
  
  Nucleic Acids Research 38(20)
  
  Pages: 1-10
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20300148
[Journal Article] Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography2008
- Author(s)
  Kaminuma E, Yoshizumi T, Wada T, Matsui M, Toyoda T.
- Journal Title
  
  The Plant Journal 56
  
  Pages: 470-482
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] A survey and analysis of regulated alternative splicing events in Arabidopsis thaliana using genome tiling array and mRNA-seq2011
- Author(s)
  Iida, K., Kawaguchi, S., Harada, E., Matsui, A., Seki, M. and Toyoda, T.
- Organizer
  International Plant RNA Workshop 2011
- Place of Presentation
  Yokohama
- Year and Date
  2011-06-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA and chromatin regulation in plant abiotic stress responses2011
- Author(s)
  Matsui, A., Kim, J. M., To, K. T., Nakaminami, K., Ishida, J., Morosawa, T., Tanaka, M., Kobayashi, S., Nishioka, T., Ushifusa, C., Shinozaki, K., Toyoda, T. and Seki, M.
- Organizer
  Abiotic Stress Workshop, Plant & Animal Genome XIX. The International Conference on the Status of Plant & Animal Genome Research
- Place of Presentation
  San Diego, USA
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Biogenesis mechanism and function of stress-inducible non-coding antisense RNAs2011
- Author(s)
  Matsui, A., Ishida, J., Morosawa, T., Tanaka, M., Endo, T. A., Iida, K., Toyoda, T., Shinozaki, K. and Seki, M.
- Organizer
  International Plant RNA Workshop 2011
- Place of Presentation
  Yokohama
- Year and Date
  2011-06-20
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Genome-wide analysis of RNA regulation in plant abiotic stress responses2010
- Author(s)
  Seki, M., Matsui A., Ishida J., Morosawa T., Iida K., Endo T., Okamoto M., Tanaka M., Kawaguchi S., Shinozaki K. and Toyoda T.
- Organizer
  Society for Experimental Biology Annual Main Meeting 2010
- Place of Presentation
  Prague Czech Republic
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodeling-mediated regulatory mechanisms in plant abiotic stress responses2010
- Author(s)
  Matsui A., Kim J-M., To K. T., Nakaminami K., Ishida J., Morosawa T., Tanaka M., Endo T., Kawaguchi S., Iida K., Shinozaki K., Toyoda T. and Seki, M.
- Organizer
  The 2010 Cold Spring Harbor Asia Conference on From Plant Biology to Crop Biotechnology
- Place of Presentation
  Suzhou, China
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] ARTADE2.0 : a mathematical integration of tiling array, CAGE and sequeince data to elucidate the transcriptional systems dynamics of Arabidopsis thaliana2009
- Author(s)
  Kawaguchi S., Hanada K., Iida K., Mochizuki Y., Matsui A., Okamoto M., Seki M., Shinozaki K. and Toyoda T.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  Edinburgh, Scotlant UK
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodeling-mediated regulatory mechanisms in plant abiotic stress resonses2009
- Author(s)
  Matsui A., Kim J-M., Ishida J., Morosawa T., Endo T., Okamoto M., Kurihara K., Nakaminami K., Tanaka M., To T., Nambara E., Hanada K., Mochizuki Y., Kawaguchi S., Toyoda T., Shinozak K. and Seki M.
- Organizer
  9th IPMB Congress
- Place of Presentation
  St. Louis, Missouri, USA
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Novel RNA-and chromatin remodelingmediated regulatory mechanisms in plant abiotic stress resonses2009
- Author(s)
  Matsui A., Kim J-M., Ishida J., Morosawa T., Okamoto M., Kim T., Nambara E., Mochizuki Y., Kawaguchi S., Toyoda T., Shinozak K. and Seki M.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  Edinburgh, Scotlant UK
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] Multiple alternative splicing events in individual transcripts ; analyses using full-length cDNAs and tiling arrays2009
- Author(s)
  Iida K., Kawaguchi S., Nanada K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K. and Toyoda T.
- Organizer
  20th International Conference on Arabidopsis Research
- Place of Presentation
  Edinburgh, Scotlant UK
- Data Source
  KAKENHI-PROJECT-21570056
[Presentation] シロイヌナズナのオミックス総合データベース2009
- Author(s)
  豊田哲郎, 神沼英里
- Organizer
  第50回日本植物生理学会年会シンポジウム
- Place of Presentation
  名古屋
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] シロイヌナズナLucTagラインを用いた遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  人工知能学会第36回分子生物情報研究会(SIG-MBI)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] シロイヌナズナLucTagラインを用いた遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 豊田哲郎, 松井南
- Organizer
  人工知能学会第36回分子生物情報研究会(SIG-MBI)
- Place of Presentation
  理化学研究所横浜研究所中央研究棟2階
- Year and Date
  2008-01-11
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] 植物形状Template modelを用いたLucTagラインの時空間遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  第72回日本植物学会大会シンポジウム「バイオイメージングと画像情報処理が拓くもの」
- Place of Presentation
  高知
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] デジタルwhole mount in situ hybridizationに向けたシロイヌナズナLucTagラインの遺伝子発現時系列画像の定量化2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 豊田哲郎, 松井南
- Organizer
  植物生理学会第49回年会
- Place of Presentation
  札幌コンベンションセンター
- Year and Date
  2008-03-22
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] デジタルwhole mount in situ hybridizationに向けたシロイヌナズナLucTagラインの遺伝子発現時系列画像の定量化2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎
- Organizer
  第49回日本植物生理学会年会
- Place of Presentation
  札幌
- Data Source
  KAKENHI-PROJECT-18700296
[Presentation] 植物形状Template Model を用いたLucTag Lineの時空間遺伝子発現定量解析2008
- Author(s)
  神沼英里, 吉積毅, 栗山朋子, 越智子, 武藤周, 松井南, 豊田哲郎,
- Organizer
  植物学会第72回大会シンポジウム
- Place of Presentation
  高知大学
- Year and Date
  2008-09-26
- Data Source
  KAKENHI-PROJECT-18700296

1. KAMINUMA Eli (90314559)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
2. MATSUI Minami (80190396)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
3. YOSHIZUMI Takeshi (80342872)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
4. WAKANA Shigeharu (90192434)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
5. MASUYA Hiroshi (40321814)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. OGURA Atsuo (20194524)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. MIYAKAWA Tsuyoshi (10301780)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. NAKAGATA Naomi (30159058)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. FURUSE Tamio (60392106)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. KANEDA Hideki (00214479)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. KOIDE Tsuyoshi (20221955)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. SEKI Motoaki (80281624)

# of Collaborated Projects: 1 results

# of Collaborated Products: 13 results
13. MATSUI Akihiro (90443027)

# of Collaborated Projects: 1 results

# of Collaborated Products: 11 results
14. 山本英里

# of Collaborated Projects: 0 results

# of Collaborated Products: 8 results

TOYODA Tetsuro 豊田 哲郎

Research Projects

Research Products

Co-Researchers

Analysis of stress-responsive non-coding antisense RNAs that are co-expressed with sense RNAs

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of database for international sharing of fundamental information on mouse phenotypic analyses

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Constructing morphological template models of Arabidopsis thaliana for computational mutant screening

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Arabidopsis tiling array analysis to identify the stress-responsive genes. In "Methods in Molecular Biology-Plant Stress Tolerance(Edited by Dr. Ramanjulu Sunkar)"2010

Author(s)

Publisher

Data Source

[Journal Article] Positional correlation analysis improves reconstruction of full-length transcript and alternative isoform from noisy array signals or short reads2012

Author(s)

Journal Title

Data Source

[Journal Article] Surveillance of 3' non-coding transcripts requires FIERY1 and XRN3 in Arabidopsis2012

Author(s)

Volume

Pages

Data Source

[Journal Article] ARTADE2DB : Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic-Structure-Based Dynamic Expression(DSDE) Analyses2011

Author(s)

Journal Title

NAID

Data Source

[Journal Article] The RIKEN integrated database of mammals2010

Author(s)

Journal Title

Data Source

[Journal Article] Quantitative analysis of heterogeneous spatial distribution of Arabidopsis leaf trichomes using micro X-ray computed tomography2008

Author(s)

Journal Title

Data Source

[Presentation] A survey and analysis of regulated alternative splicing events in Arabidopsis thaliana using genome tiling array and mRNA-seq2011

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] Novel RNA and chromatin regulation in plant abiotic stress responses2011

Author(s)

Organizer

Place of Presentation

Data Source

[Presentation] Biogenesis mechanism and function of stress-inducible non-coding antisense RNAs2011

Author(s)

Organizer

Place of Presentation

Year and Date

Data Source

[Presentation] Genome-wide analysis of RNA regulation in plant abiotic stress responses2010

Author(s)

Organizer

Place of Presentation

Data Source

[Presentation] Novel RNA-and chromatin remodeling-mediated regulatory mechanisms in plant abiotic stress responses2010

Author(s)

Organizer

Place of Presentation

Data Source

[Presentation] ARTADE2.0 : a mathematical integration of tiling array, CAGE and sequeince data to elucidate the transcriptional systems dynamics of Arabidopsis thaliana2009

Author(s)

Organizer

Place of Presentation

Data Source

TOYODA Tetsuro 豊田哲郎