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Oota Satoshi  太田 聡史

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OOTA Satoshi  太田 聡史

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Researcher Number 30391890
Affiliation (Current) 2025: 国立研究開発法人理化学研究所, 光量子工学研究センター, 特別嘱託研究員
Affiliation (based on the past Project Information) *help 2022 – 2023: 国立研究開発法人理化学研究所, 光量子工学研究センター, 特別嘱託研究員
2018 – 2021: 国立研究開発法人理化学研究所, 光量子工学研究センター, 専任研究員
2017: 国立研究開発法人理化学研究所, その他, 研究員
2015 – 2017: 国立研究開発法人理化学研究所, バイオリソースセンター, 専任研究員
2014: 独立行政法人理化学研究所, バイオリソースセンター, 研究員 … More
2013 – 2014: 独立行政法人理化学研究所, バイオリソースセンター, 専任研究員
2007 – 2012: The Institute of Physical and Chemical Research, 情報解析技術室, 専任研究員
2010: 独立行政法人理化学研究所, 情報解析技術室, 專任研究員
2005 – 2006: 独立行政法人理化学研究所, 情報解析技術室, 研究員 Less
Review Section/Research Field
Principal Investigator
Laboratory animal science
Except Principal Investigator
Transformative Research Areas, Section (III) / Complex systems / Life / Health / Medical informatics / Evolutionary biology / 基礎ゲノム科学
Keywords
Principal Investigator
進化 / 筋骨格モデル / セグメンテーション / 突然変異マウス / X線CTスキャン / 生体力学 / マウス / ヒト / 相同性 / 遺伝子発現データ … More / 歩行パターン / 歩行 / シミュレーション / 神経筋骨格モデル / 歩行データ / 骨格モデル / Inverse kinematics / Mutant mouse / Musculoskeletal model / 筋腱構造 / 実験用マウス / 機能解放学的情報 / 写像 / モーションキャプチャ / 進化的相同性 / 運動機能 / 逆運動学 / 骨格 / CTスキャン / 野生由来マウス / Morphometric / 3次元モデル / 実験用近交系マウス / MSM / 筋骨格系モデル / 歩行異常 / 骨格ポリゴンデータ … More
Except Principal Investigator
データベース / ゲノム / ゲノム進化 / 認知発達ロボティクス / 予測符号化 / 注意モデル / 全身筋骨格シミュレーション / Scx-GFP蛍光遺伝子 / 統合情報量 / 全身筋骨格モデルシミュレーション / マウス / 多変量解析 / 筋骨格シミュレーション / 計算神経科学 / 触覚細胞モデル / マウス全身筋骨格モデル / 触覚シミュレーション / 神経系シミュレーション / 全身筋骨格マウスシミュレーション / 構成論的発達科学 / クラスタリング / 細胞マーカー遺伝子 / 細胞系譜 / 単一細胞トランスクリプトーム解析 / 細胞社会モデル / 状態遷移マーカー遺伝子探索 / 炎症モデル構築 / 体細胞変異 / マーカー遺伝子探索 / 細胞系譜再構築 / NGSデータ解析 / 炎症細胞の遷移 / 単一細胞トランスクリプトーム / 3D 発現地図 / 逆運動学解析 / ハンチントン病 / モーションキャプチャー / 随意運動 / 遺伝子発現 / 哺乳類 / 進化 / 突然変異 / 比較ゲノム / ムササビ / カピバラ / ゲノム解析 / ABO式血液型遺伝子 / 遺伝子変換 / 突然変異パターン / チベットモンキー / Rh式血液型遺伝子 / カニクイザル / 反復配列 / CNS / 霊長類 / ゲノム進化・再編 / ゲノム再編成 / BACライブラリー / t-ハプロタイプ / 染色体組換え / 再編 Less
  • Research Projects

    (8 results)
  • Research Products

    (40 results)
  • Co-Researchers

    (13 People)
  •  Holistic approach towards understanding cognitive and motor development based on interaction among brain, body, and environment.

    • Principal Investigator
      Mori Hiroki
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Transformative Research Areas (B)
    • Review Section
      Transformative Research Areas, Section (III)
    • Research Institution
      Waseda University
  •  Study of Information analysis and modelinig

    • Principal Investigator
      IKEO KAZUHO
    • Project Period (FY)
      2017 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      National Institute of Genetics
  •  Integrative study of nucleotide sequence evolution using primate genomes as model

    • Principal Investigator
      SAITOU NARUYA
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Evolutionary biology
    • Research Institution
      National Institute of Genetics
  •  Gene expression analyses in the mouse digital brain for understanding molecular bases of higher motor disfunction

    • Principal Investigator
      Okamura-Oho Yuko
    • Project Period (FY)
      2014 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Institute of Physical and Chemical Research
  •  Mutual mapping of biomechanics models for comparative analysis of neuro-motor functions between human and mousePrincipal Investigator

    • Principal Investigator
      OOTA Satoshi
    • Project Period (FY)
      2011 – 2014
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Laboratory animal science
    • Research Institution
      The Institute of Physical and Chemical Research
  •  Structural analysis of genomic regions where genetic recombination was suppressed for over million years

    • Principal Investigator
      ABE Kuniya
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      基礎ゲノム科学
    • Research Institution
      The Institute of Physical and Chemical Research
  •  Development of a musculoskeletal computer model for laboratory micePrincipal Investigator

    • Principal Investigator
      OOTA SATOSHI
    • Project Period (FY)
      2008 – 2010
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Laboratory animal science
    • Research Institution
      The Institute of Physical and Chemical Research
  •  3次元仮想ラボラトリー・マウスの作成Principal Investigator

    • Principal Investigator
      太田 聡史
    • Project Period (FY)
      2005 – 2007
    • Research Category
      Grant-in-Aid for Exploratory Research
    • Research Field
      Laboratory animal science
    • Research Institution
      The Institute of Physical and Chemical Research

All 2024 2022 2015 2014 2013 2012 2011 2010 2009 2008 Other

All Journal Article Presentation Book

  • [Book] ビッグデータ時代のゲノミクス情報処理2014

    • Author(s)
      北上始, 斉藤成也, 太田聡史
    • Total Pages
      226
    • Publisher
      コロナ社
    • Data Source
      KAKENHI-PROJECT-26280110
  • [Book] ビッグデータ時代のゲノミクス情報処理2014

    • Author(s)
      北上始・斎藤成也・太田聡史
    • Total Pages
      226
    • Publisher
      コロナ社
    • Data Source
      KAKENHI-PROJECT-26251040
  • [Book] ビッグデータ時代のゲノミクス情報処理2014

    • Author(s)
      北上 始 (著), 太田 聡史 (著), 斎藤 成也 (著)
    • Total Pages
      226
    • Publisher
      コロナ社
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Book] 生命科学研究の戦略:疾患モデルマウスと表現型解析(表現型解析の潮流・表現型の数値化と定量解析)

    • Author(s)
      太田聡史、阿部訓也、沼田興治
    • Publisher
      中山書店(印刷中)
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Journal Article] Real-Time Course: Reconstruction of cellular diversity and lineage trajectory based on somatic mutational patterns detected from low-pass single-cell transcriptome data2022

    • Author(s)
      1.Satoshi Oota*, Kuniya Abe, Hideo Yokota, Kazuho Ikeo.
    • Journal Title

      Research Square

      Volume: なし Pages: 1-22

    • DOI

      10.21203/rs.3.rs-1558242/v1

    • Open Access
    • Data Source
      KAKENHI-PLANNED-17H06399
  • [Journal Article] The Asian DNA Repository Consortium. Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data2015

    • Author(s)
      5.Shigeki Nakagome, Takehiro Sato, Hajime Ishida, Tsunehiko Hanihara, Tetsutaro Yamaguchi, Ryosuke Kimura, Shuhei, Mano, Hiroki Oota
    • Journal Title

      Mol. Biol. Evol

      Volume: 印刷中

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-26251040
  • [Journal Article] CT Image Segmentation Using FEM with Optimized Boundary Condition2012

    • Author(s)
      Hishida, Hiroyuki Suzuki, Hiromasa Michikawa, Takashi Ohtake, Yutaka and Oota, Satoshi
    • Journal Title

      PLoS ONE

      Volume: 7

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Journal Article] 表現型解析の潮流・表現型の数値化と定量解析2011

    • Author(s)
      太田聡史、阿部訓也、沼田興治
    • Journal Title

      生命科学研究の戦略:疾患モデルマウスと表現型解析

      Volume: (In press)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Journal Article] Development of a coarse-grained skeletal model of laboratory mouse and its biomechanical applications2010

    • Author(s)
      Oota, S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
    • Journal Title

      Proceeding in 1st International Conference on Applied Bionics and Biomechanics (ICABB-2010)

      Volume: (Electric proceeding)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model2010

    • Author(s)
      Oota, S., et al.
    • Journal Title

      Genome Biol Evol.

      Volume: 2 Pages: 558-571

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rato model2010

    • Author(s)
      Oota, S., K.Kawamura, Y.Kawai, N.Saitou
    • Journal Title

      Genome Biol Evol

      Volume: 2 Pages: 558-571

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model.2010

    • Author(s)
      Oota S., Kawamura K., Kawai Y., Saitou N.
    • Journal Title

      Genome Biol Evol 2

      Pages: 558-571

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Journal Article] Development of a coarse-grained skeletal model of laboratory mouse and its biomechanical applications. Reviewed electric materials.2010

    • Author(s)
      Oota S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
    • Journal Title

      1st International Conference on Applied Bionics and Biomechanics (ICABB-2010)(VENICE, ITALY.)

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model.2010

    • Author(s)
      Oota S., K.Kawamura, Y.Kawai, N.Saitou
    • Journal Title

      Genome Biol Evol 2

      Pages: 558-571

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] CT image segmentation using structural analysis.2010

    • Author(s)
      Hishida H., T.Michikawa, Y.Ohtake, H.Suzuki, S.Oota
    • Journal Title

      Proceedings of the 6th international conference on Advances in visual computing.(Springer-Verlag, Las Vegas, NV, USA.)

      Pages: 39-48

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] CT image segmentation using structural analysis2010

    • Author(s)
      Hishida, H., T.Michikawa, Y.Ohtake, H.Suzuki, S.Oota
    • Journal Title

      Proceedings of the 6th international conference on Advances in visual computing

      Volume: 3 Pages: 39-48

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] Unique inbred strain MSM/Ms established from the Japanese wild mouse.2009

    • Author(s)
      Moriwaki K., N.Miyashita, A.Mita, H.Gotoh, K.Tsuchiya, H.Kato, K.Mekada, CNoro, S. Oota, A.Yoshiki, Y.Obata, H.Yonekawa, T.Shiroishi
    • Journal Title

      Exp Anim 58

      Pages: 123-134

    • NAID

      10024838237

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009

    • Author(s)
      Oota S., K.Mekada, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, R.T., Y.A.
    • Journal Title

      EMBS '09. 31st Annual International Conference of the IEEE.

      Pages: 5227-5230

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Journal Article] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009

    • Author(s)
      Oota S, Mekada K, Fujita Y, Humphries J, Fukami-Kobayashi K, Obata Y, Rowe T, Yoshiki A.
    • Journal Title

      Conf Proc IEEE Eng Med Biol Soc. 1

      Pages: 5227-5230

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] 新しい生体力学的アプローチによる実験用マウスの運動解析2024

    • Author(s)
      太田聡史, 山本怜哉, 森裕紀, 横田秀夫, 理一郎
    • Organizer
      Neuro2024
    • Data Source
      KAKENHI-PLANNED-21H05138
  • [Presentation] Developmental Biomechanics: A New Approach to Studying Rodent Development through Machine Learning-Based Fine-Grained Motion Analysis2024

    • Author(s)
      Satoshi Oota, Hiroki Mori, Yuko Okamura-Oho, Sakiko Nakamura, Hideo Yokota
    • Organizer
      The IEEE International Conference on Development and Learning 2024
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-21H05138
  • [Presentation] 遺伝子発現パターンを用いた実験用マウス筋骨格モデルの開発2022

    • Author(s)
      太田聡史、吉木淳、森裕紀、平理一郎、姫野龍太郎、横田秀夫
    • Organizer
      第76回日本人類学会大会・第38回日本霊長類学会大会連合大会
    • Data Source
      KAKENHI-PLANNED-21H05138
  • [Presentation] Neuromuscular Modeling by Bridging Mouse and Human2015

    • Author(s)
      Satoshi Oota
    • Organizer
      Japan-EU Workshop on Neurorobotics
    • Place of Presentation
      Ichijyo Hall, Yayoi Auditorium, The University of Tokyo,Tokyo
    • Year and Date
      2015-04-18
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280110
  • [Presentation] Towards a fine-grained mouse neuro-musculoskeletal model2015

    • Author(s)
      Satoshi Oota
    • Organizer
      理研シンポジウム・3次元内部構造顕微鏡による3次元計測の生物・材料分野への挑戦と展開
    • Place of Presentation
      埼玉県和光市広沢2-1理化学研究所
    • Year and Date
      2015-02-06
    • Invited
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Presentation] The homology mapping: interspecies functional morphing2015

    • Author(s)
      Satoshi Oota, Yosuke Ikegami, Koh Ayusawa, Nobunori Kakusho, Atsushi Yoshiki,, Hideo Yokota, Yuko Okamura-Oho, Yoshihiko Nakamura
    • Organizer
      AINI (Advances in Neuroinformatics) 2015
    • Place of Presentation
      東京大学先端科学技術研究センター エネオスホール、東京 駒場
    • Year and Date
      2015-11-26
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26280110
  • [Presentation] Neuromuscular Modeling by Bridging Mouse and Human2015

    • Author(s)
      Satoshi Oota
    • Organizer
      Japan-EU Workshop on Neurorobotics
    • Place of Presentation
      東京都文京区弥生1-1-1 東京大学農学部内
    • Year and Date
      2015-04-18
    • Invited
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Presentation] Development of a musculoskeletal model of laboratory mouse2014

    • Author(s)
      Satoshi Oota
    • Organizer
      Joint Workshop on Bio-inspired Engineering and Bio-supercomputing
    • Place of Presentation
      千葉
    • Invited
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Presentation] モーションキャプチャ技術を用いた Hugger ミュー タントマウスの歩行解析2013

    • Author(s)
      太田 聡史
    • Organizer
      第 60 回日本実験動物学会総会
    • Place of Presentation
      つくば
    • Data Source
      KAKENHI-PROJECT-23650246
  • [Presentation] Of Mice and Men : Biomechanical Modeling as a Tool to Translate Bone Biology Research into Clinical Practice2010

    • Author(s)
      Oota, S.
    • Organizer
      6th World Congress of Biomechanics (WCB 2010)
    • Place of Presentation
      Singapore
    • Year and Date
      2010-08-05
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] アイソコアの進化:新しい枠組み2010

    • Author(s)
      太田聡史
    • Organizer
      遺伝学会第82回大会
    • Place of Presentation
      札幌
    • Year and Date
      2010-09-21
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Presentation] アイソコアの進化:新しい枠組み2010

    • Author(s)
      太田聡史
    • Organizer
      第82回日本遺伝学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2010-09-21
    • Data Source
      KAKENHI-PROJECT-20310118
  • [Presentation] Analysis on mutant specific gait patterns of mutant mice with inverse dynamics.2010

    • Author(s)
      Oota S., Y.Nakamura, Y.Obata, A.Yoshiki
    • Organizer
      Neuro 2010
    • Place of Presentation
      Nagoya
    • Year and Date
      2010-09-04
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] Development of a coarse-grained skeletal model of laboratory mouse and its applications2010

    • Author(s)
      Oota, S.
    • Organizer
      1st International Conference on Applied Bionics and Biomechanics
    • Place of Presentation
      Venice
    • Year and Date
      2010-10-15
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] Development of a coarse-grained skeletal model of laboratory mouse and its applications.2010

    • Author(s)
      Oota S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
    • Organizer
      1st International Conference on Applied Bionics and Biomechanics
    • Place of Presentation
      Venice, Italy
    • Year and Date
      2010-10-15
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] CT Image Segmentation using Structural Analysis.2010

    • Author(s)
      HISHIDA H., T.MICHIKAWA, Y.OHTAKE, H.SUZUKI, S.OOTA
    • Organizer
      6th International Symposium on Visual Computing (ISVC06)
    • Place of Presentation
      Las Vegas, Nevada, USA
    • Year and Date
      2010-11-30
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] Analysis on mutant specific gait patterns of mutant mice with inverse dynamics2010

    • Author(s)
      Oota, S.
    • Organizer
      Neuro 2010
    • Place of Presentation
      Nagoya
    • Year and Date
      2010-09-04
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation]2010

    • Author(s)
      Oota S., A.Yoshiki, H.Yokota, Y.Obata, Y.Nakamura, R.Himeno
    • Organizer
      Of Mice and Men : Biomechanical Modeling as a Tool to Translate Bone Biology Research into Clinical Practice 6th World Congress of Biomechanics (WCB 2010)
    • Place of Presentation
      Singapore
    • Year and Date
      2010-08-05
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009

    • Author(s)
      Oota S
    • Organizer
      31^<st> Annual International Conference of the IEEE Engineering in Medicine and Biology Sciety
    • Place of Presentation
      Hilton Minneapolis, Minnesota, USA
    • Year and Date
      2009-09-05
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] A new approach to analyze mutant specific gait patterns of mutant mice2009

    • Author(s)
      Oota S
    • Organizer
      第32回日本神経科学大会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2009-09-18
    • Data Source
      KAKENHI-PROJECT-20500384
  • [Presentation] 定量的な歩行パターン解析のための突然変異マウス筋骨格系モデルの構築2008

    • Author(s)
      太田聡史
    • Organizer
      第31回日本神経科学大会
    • Place of Presentation
      東京国際フォーラム
    • Year and Date
      2008-07-09
    • Data Source
      KAKENHI-PROJECT-20500384
  • 1.  ATSUSHI Yoshiki (40212310)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 7 results
  • 2.  IKEO KAZUHO (20249949)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 3.  ABE Kuniya (40240915)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 4.  KAZUHIRO Kawamura (40204771)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 5.  SAITOU NARUYA (30192587)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 6.  Okamura-Oho Yuko (60381571)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 7.  Mori Hiroki (80610849)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 8.  長田 直樹 (70416270)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  古賀 章彦 (80192574)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  北野 誉 (90400564)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  横田 秀夫 (00261206)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 12.  渡邉 日出海 (30322754)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  小倉 淳 (60465929)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results

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