Oota Satoshi 太田聡史

… Alternative Names

OOTA Satoshi 太田聡史

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Researcher Number	30391890
Affiliation (Current)	2023: 国立研究開発法人理化学研究所, 光量子工学研究センター, 特別嘱託研究員
Affiliation (based on the past Project Information) *help	2022: 国立研究開発法人理化学研究所, 光量子工学研究センター, 特別嘱託研究員 2018 – 2021: 国立研究開発法人理化学研究所, 光量子工学研究センター, 専任研究員 2017: 国立研究開発法人理化学研究所, その他, 研究員 2015 – 2017: 国立研究開発法人理化学研究所, バイオリソースセンター, 専任研究員 2014: 独立行政法人理化学研究所, バイオリソースセンター, 研究員 … More 2013 – 2014: 独立行政法人理化学研究所, バイオリソースセンター, 専任研究員 2007 – 2012: The Institute of Physical and Chemical Research, 情報解析技術室, 専任研究員 2010: 独立行政法人理化学研究所, 情報解析技術室, 專任研究員 2005 – 2006: 独立行政法人理化学研究所, 情報解析技術室, 研究員 Less
Review Section/Research Field	Principal Investigator Laboratory animal science Except Principal Investigator 基礎ゲノム科学 / Evolutionary biology / Life / Health / Medical informatics / Complex systems / Transformative Research Areas, Section (III)
Keywords	Principal Investigator X線CTスキャン / 突然変異マウス / セグメンテーション / 筋骨格モデル / 進化 / 骨格ポリゴンデータ / 歩行異常 / 筋骨格系モデル / MSM / 実験用近交系マウス … More / 3次元モデル / Morphometric / 野生由来マウス / CTスキャン / 骨格 / 逆運動学 / 運動機能 / 進化的相同性 / モーションキャプチャ / 写像 / 機能解放学的情報 / 実験用マウス / 筋腱構造 / Musculoskeletal model / Mutant mouse / Inverse kinematics / 骨格モデル / 歩行データ / 神経筋骨格モデル / シミュレーション / 歩行 / 歩行パターン / 遺伝子発現データ / 相同性 / ヒト / マウス / 生体力学 … More Except Principal Investigator ゲノム進化 / ゲノム / データベース / 再編 / 染色体組換え / t-ハプロタイプ / BACライブラリー / ゲノム再編成 / ゲノム進化・再編 / 霊長類 / CNS / 反復配列 / カニクイザル / Rh式血液型遺伝子 / チベットモンキー / 突然変異パターン / 遺伝子変換 / ABO式血液型遺伝子 / ゲノム解析 / カピバラ / ムササビ / 比較ゲノム / 突然変異 / 進化 / 哺乳類 / 遺伝子発現 / 随意運動 / モーションキャプチャー / ハンチントン病 / 逆運動学解析 / ３D 発現地図 / 単一細胞トランスクリプトーム / 炎症細胞の遷移 / NGSデータ解析 / 細胞系譜再構築 / マーカー遺伝子探索 / 体細胞変異 / 炎症モデル構築 / 状態遷移マーカー遺伝子探索 / 細胞社会モデル / 単一細胞トランスクリプトーム解析 / 細胞系譜 / 細胞マーカー遺伝子 / クラスタリング / 筋骨格シミュレーション / 構成論的発達科学 / 認知発達ロボティクス / 神経系シミュレーション Less

Holistic approach towards understanding cognitive and motor development based on interaction among brain, body, and environment.
- Principal Investigator
  
  森裕紀
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (B)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Waseda University
Study of Information analysis and modelinig
- Principal Investigator
  
  IKEO KAZUHO
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  National Institute of Genetics
Integrative study of nucleotide sequence evolution using primate genomes as model
- Principal Investigator
  
  SAITOU NARUYA
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Evolutionary biology
- Research Institution
  National Institute of Genetics
Gene expression analyses in the mouse digital brain for understanding molecular bases of higher motor disfunction
- Principal Investigator
  
  Okamura-Oho Yuko
- Project Period (FY)
  2014 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Institute of Physical and Chemical Research
Mutual mapping of biomechanics models for comparative analysis of neuro-motor functions between human and mousePrincipal Investigator
- Principal Investigator
  
  OOTA Satoshi
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Laboratory animal science
- Research Institution
  The Institute of Physical and Chemical Research
Structural analysis of genomic regions where genetic recombination was suppressed for over million years
- Principal Investigator
  
  ABE Kuniya
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  The Institute of Physical and Chemical Research
Development of a musculoskeletal computer model for laboratory micePrincipal Investigator
- Principal Investigator
  
  OOTA SATOSHI
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Laboratory animal science
- Research Institution
  The Institute of Physical and Chemical Research
3次元仮想ラボラトリー・マウスの作成Principal Investigator
- Principal Investigator
  
  太田聡史
- Project Period (FY)
  2005 – 2007
- Research Category
  
  Grant-in-Aid for Exploratory Research
- Research Field
  
  Laboratory animal science
- Research Institution
  The Institute of Physical and Chemical Research

All 2022 2015 2014 2013 2012 2011 2010 2009 2008 Other

All Journal Article Presentation Book

[Book] ビッグデータ時代のゲノミクス情報処理2014
- Author(s)
  北上始, 斉藤成也, 太田聡史
- Total Pages
  226
- Publisher
  コロナ社
- Data Source
  KAKENHI-PROJECT-26280110
[Book] ビッグデータ時代のゲノミクス情報処理2014
- Author(s)
  北上始・斎藤成也・太田聡史
- Total Pages
  226
- Publisher
  コロナ社
- Data Source
  KAKENHI-PROJECT-26251040
[Book] ビッグデータ時代のゲノミクス情報処理2014
- Author(s)
  北上始 (著), 太田聡史 (著), 斎藤成也 (著)
- Total Pages
  226
- Publisher
  コロナ社
- Data Source
  KAKENHI-PROJECT-23650246
[Book] 生命科学研究の戦略:疾患モデルマウスと表現型解析(表現型解析の潮流・表現型の数値化と定量解析)
- Author(s)
  太田聡史、阿部訓也、沼田興治
- Publisher
  中山書店(印刷中)
- Data Source
  KAKENHI-PROJECT-20310118
[Journal Article] Real-Time Course: Reconstruction of cellular diversity and lineage trajectory based on somatic mutational patterns detected from low-pass single-cell transcriptome data2022
- Author(s)
  1.Satoshi Oota*, Kuniya Abe, Hideo Yokota, Kazuho Ikeo.
- Journal Title
  
  Research Square
  
  Volume: なし Pages: 1-22
- DOI
  10.21203/rs.3.rs-1558242/v1
- Open Access
- Data Source
  KAKENHI-PLANNED-17H06399
[Journal Article] The Asian DNA Repository Consortium. Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data2015
- Author(s)
  5.Shigeki Nakagome, Takehiro Sato, Hajime Ishida, Tsunehiko Hanihara, Tetsutaro Yamaguchi, Ryosuke Kimura, Shuhei, Mano, Hiroki Oota
- Journal Title
  
  Mol. Biol. Evol
  
  Volume: 印刷中
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26251040
[Journal Article] CT Image Segmentation Using FEM with Optimized Boundary Condition2012
- Author(s)
  Hishida, Hiroyuki Suzuki, Hiromasa Michikawa, Takashi Ohtake, Yutaka and Oota, Satoshi
- Journal Title
  
  PLoS ONE
  
  Volume: 7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650246
[Journal Article] 表現型解析の潮流・表現型の数値化と定量解析2011
- Author(s)
  太田聡史、阿部訓也、沼田興治
- Journal Title
  
  生命科学研究の戦略:疾患モデルマウスと表現型解析
  
  Volume: (In press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310118
[Journal Article] Development of a coarse-grained skeletal model of laboratory mouse and its biomechanical applications2010
- Author(s)
  Oota, S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
- Journal Title
  
  Proceeding in 1st International Conference on Applied Bionics and Biomechanics (ICABB-2010)
  
  Volume: (Electric proceeding)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model2010
- Author(s)
  Oota, S., et al.
- Journal Title
  
  Genome Biol Evol.
  
  Volume: 2 Pages: 558-571
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310118
[Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rato model2010
- Author(s)
  Oota, S., K.Kawamura, Y.Kawai, N.Saitou
- Journal Title
  
  Genome Biol Evol
  
  Volume: 2 Pages: 558-571
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model.2010
- Author(s)
  Oota S., Kawamura K., Kawai Y., Saitou N.
- Journal Title
  
  Genome Biol Evol 2
  
  Pages: 558-571
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310118
[Journal Article] Development of a coarse-grained skeletal model of laboratory mouse and its biomechanical applications. Reviewed electric materials.2010
- Author(s)
  Oota S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
- Journal Title
  
  1st International Conference on Applied Bionics and Biomechanics (ICABB-2010)(VENICE, ITALY.)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] A new framework for studying the isochore evolution : estimation of the equilibrium GC content based on the temporal mutation rate model.2010
- Author(s)
  Oota S., K.Kawamura, Y.Kawai, N.Saitou
- Journal Title
  
  Genome Biol Evol 2
  
  Pages: 558-571
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] CT image segmentation using structural analysis.2010
- Author(s)
  Hishida H., T.Michikawa, Y.Ohtake, H.Suzuki, S.Oota
- Journal Title
  
  Proceedings of the 6th international conference on Advances in visual computing.(Springer-Verlag, Las Vegas, NV, USA.)
  
  Pages: 39-48
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] CT image segmentation using structural analysis2010
- Author(s)
  Hishida, H., T.Michikawa, Y.Ohtake, H.Suzuki, S.Oota
- Journal Title
  
  Proceedings of the 6th international conference on Advances in visual computing
  
  Volume: 3 Pages: 39-48
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] Unique inbred strain MSM/Ms established from the Japanese wild mouse.2009
- Author(s)
  Moriwaki K., N.Miyashita, A.Mita, H.Gotoh, K.Tsuchiya, H.Kato, K.Mekada, CNoro, S. Oota, A.Yoshiki, Y.Obata, H.Yonekawa, T.Shiroishi
- Journal Title
  
  Exp Anim 58
  
  Pages: 123-134
- NAID
  10024838237
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009
- Author(s)
  Oota S., K.Mekada, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, R.T., Y.A.
- Journal Title
  
  EMBS '09. 31st Annual International Conference of the IEEE.
  
  Pages: 5227-5230
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Journal Article] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009
- Author(s)
  Oota S, Mekada K, Fujita Y, Humphries J, Fukami-Kobayashi K, Obata Y, Rowe T, Yoshiki A.
- Journal Title
  
  Conf Proc IEEE Eng Med Biol Soc. 1
  
  Pages: 5227-5230
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] Neuromuscular Modeling by Bridging Mouse and Human2015
- Author(s)
  Satoshi Oota
- Organizer
  Japan-EU Workshop on Neurorobotics
- Place of Presentation
  Ichijyo Hall, Yayoi Auditorium, The University of Tokyo,Tokyo
- Year and Date
  2015-04-18
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26280110
[Presentation] Towards a fine-grained mouse neuro-musculoskeletal model2015
- Author(s)
  Satoshi Oota
- Organizer
  理研シンポジウム・3次元内部構造顕微鏡による3次元計測の生物・材料分野への挑戦と展開
- Place of Presentation
  埼玉県和光市広沢2-1理化学研究所
- Year and Date
  2015-02-06
- Invited
- Data Source
  KAKENHI-PROJECT-23650246
[Presentation] The homology mapping: interspecies functional morphing2015
- Author(s)
  Satoshi Oota, Yosuke Ikegami, Koh Ayusawa, Nobunori Kakusho, Atsushi Yoshiki,, Hideo Yokota, Yuko Okamura-Oho, Yoshihiko Nakamura
- Organizer
  AINI (Advances in Neuroinformatics) 2015
- Place of Presentation
  東京大学先端科学技術研究センター　エネオスホール、東京　駒場
- Year and Date
  2015-11-26
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26280110
[Presentation] Neuromuscular Modeling by Bridging Mouse and Human2015
- Author(s)
  Satoshi Oota
- Organizer
  Japan-EU Workshop on Neurorobotics
- Place of Presentation
  東京都文京区弥生1-1-1 東京大学農学部内
- Year and Date
  2015-04-18
- Invited
- Data Source
  KAKENHI-PROJECT-23650246
[Presentation] Development of a musculoskeletal model of laboratory mouse2014
- Author(s)
  Satoshi Oota
- Organizer
  Joint Workshop on Bio-inspired Engineering and Bio-supercomputing
- Place of Presentation
  千葉
- Invited
- Data Source
  KAKENHI-PROJECT-23650246
[Presentation] モーションキャプチャ技術を用いた Hugger ミュータントマウスの歩行解析2013
- Author(s)
  太田聡史
- Organizer
  第 60 回日本実験動物学会総会
- Place of Presentation
  つくば
- Data Source
  KAKENHI-PROJECT-23650246
[Presentation] Of Mice and Men : Biomechanical Modeling as a Tool to Translate Bone Biology Research into Clinical Practice2010
- Author(s)
  Oota, S.
- Organizer
  6th World Congress of Biomechanics (WCB 2010)
- Place of Presentation
  Singapore
- Year and Date
  2010-08-05
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] アイソコアの進化:新しい枠組み2010
- Author(s)
  太田聡史
- Organizer
  遺伝学会第82回大会
- Place of Presentation
  札幌
- Year and Date
  2010-09-21
- Data Source
  KAKENHI-PROJECT-20310118
[Presentation] アイソコアの進化:新しい枠組み2010
- Author(s)
  太田聡史
- Organizer
  第82回日本遺伝学会大会
- Place of Presentation
  札幌
- Year and Date
  2010-09-21
- Data Source
  KAKENHI-PROJECT-20310118
[Presentation] Analysis on mutant specific gait patterns of mutant mice with inverse dynamics.2010
- Author(s)
  Oota S., Y.Nakamura, Y.Obata, A.Yoshiki
- Organizer
  Neuro 2010
- Place of Presentation
  Nagoya
- Year and Date
  2010-09-04
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] Development of a coarse-grained skeletal model of laboratory mouse and its applications2010
- Author(s)
  Oota, S.
- Organizer
  1st International Conference on Applied Bionics and Biomechanics
- Place of Presentation
  Venice
- Year and Date
  2010-10-15
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] Development of a coarse-grained skeletal model of laboratory mouse and its applications.2010
- Author(s)
  Oota S., A.Yoshiki, Y.Fujita, J.Humphries, K.Fukami-Kobayashi, Y.Obata, T.Rowe, Y.Nakamura
- Organizer
  1st International Conference on Applied Bionics and Biomechanics
- Place of Presentation
  Venice, Italy
- Year and Date
  2010-10-15
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] CT Image Segmentation using Structural Analysis.2010
- Author(s)
  HISHIDA H., T.MICHIKAWA, Y.OHTAKE, H.SUZUKI, S.OOTA
- Organizer
  6th International Symposium on Visual Computing (ISVC06)
- Place of Presentation
  Las Vegas, Nevada, USA
- Year and Date
  2010-11-30
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] Analysis on mutant specific gait patterns of mutant mice with inverse dynamics2010
- Author(s)
  Oota, S.
- Organizer
  Neuro 2010
- Place of Presentation
  Nagoya
- Year and Date
  2010-09-04
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation]2010
- Author(s)
  Oota S., A.Yoshiki, H.Yokota, Y.Obata, Y.Nakamura, R.Himeno
- Organizer
  Of Mice and Men : Biomechanical Modeling as a Tool to Translate Bone Biology Research into Clinical Practice 6th World Congress of Biomechanics (WCB 2010)
- Place of Presentation
  Singapore
- Year and Date
  2010-08-05
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture2009
- Author(s)
  Oota S
- Organizer
  31^<st> Annual International Conference of the IEEE Engineering in Medicine and Biology Sciety
- Place of Presentation
  Hilton Minneapolis, Minnesota, USA
- Year and Date
  2009-09-05
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] A new approach to analyze mutant specific gait patterns of mutant mice2009
- Author(s)
  Oota S
- Organizer
  第32回日本神経科学大会
- Place of Presentation
  名古屋国際会議場
- Year and Date
  2009-09-18
- Data Source
  KAKENHI-PROJECT-20500384
[Presentation] 定量的な歩行パターン解析のための突然変異マウス筋骨格系モデルの構築2008
- Author(s)
  太田聡史
- Organizer
  第31回日本神経科学大会
- Place of Presentation
  東京国際フォーラム
- Year and Date
  2008-07-09
- Data Source
  KAKENHI-PROJECT-20500384

1. ATSUSHI Yoshiki (40212310)

# of Collaborated Projects: 2 results

# of Collaborated Products: 7 results
2. IKEO KAZUHO (20249949)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
3. ABE Kuniya (40240915)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
4. KAZUHIRO Kawamura (40204771)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
5. SAITOU NARUYA (30192587)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. Okamura-Oho Yuko (60381571)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
7. 長田直樹 (70416270)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 古賀章彦 (80192574)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 北野誉 (90400564)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 横田秀夫 (00261206)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
11. 渡邉日出海 (30322754)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 小倉淳 (60465929)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 森裕紀 (80610849)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Oota Satoshi 太田 聡史

OOTA Satoshi 太田 聡史

Research Projects

Research Products

Co-Researchers

Holistic approach towards understanding cognitive and motor development based on interaction among brain, body, and environment.

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Study of Information analysis and modelinig

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Integrative study of nucleotide sequence evolution using primate genomes as model

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Gene expression analyses in the mouse digital brain for understanding molecular bases of higher motor disfunction

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Mutual mapping of biomechanics models for comparative analysis of neuro-motor functions between human and mousePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Structural analysis of genomic regions where genetic recombination was suppressed for over million years

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Development of a musculoskeletal computer model for laboratory micePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

3次元仮想ラボラトリー・マウスの作成Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] ビッグデータ時代のゲノミクス情報処理2014

Author(s)

Total Pages

Publisher

Data Source

[Book] ビッグデータ時代のゲノミクス情報処理2014

Author(s)

Total Pages

Publisher

Data Source

[Book] ビッグデータ時代のゲノミクス情報処理2014

Author(s)

Total Pages

Publisher

Data Source

[Book] 生命科学研究の戦略:疾患モデルマウスと表現型解析(表現型解析の潮流・表現型の数値化と定量解析)

Author(s)

Publisher

Data Source

[Journal Article] Real-Time Course: Reconstruction of cellular diversity and lineage trajectory based on somatic mutational patterns detected from low-pass single-cell transcriptome data2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The Asian DNA Repository Consortium. Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data2015

Author(s)

Journal Title

Oota Satoshi 太田聡史

OOTA Satoshi 太田聡史