KAWANO Shin 河野信

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Kawano Shin 河野信

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Researcher Number	40470075
Other IDs
Affiliation (Current)	2025: 北里大学, 未来工学部, 教授 2025: 大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 客員教授
Affiliation (based on the past Project Information) *help	2022: 富山国際大学, 現代社会学部, 教授 2020 – 2021: 富山国際大学, 現代社会学部, 准教授 2018: 大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 客員准教授 2017: 大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任准教授 2016: 大学共同利用機関法人情報・システム研究機構(新領域融合研究センター及びライフサイエンス統合データベースセンター), データサイエンス共同利用基盤施設, 特任准教授
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / Life / Health / Medical informatics
Keywords	Principal Investigator プロテオーム / de novo sequencing / アミノ酸組成分析 / アミノ酸配列決定 / 質量分析 / タンパク質 / ゲノム / バイオマーカー / プロテオゲノミクス / パーソナルゲノム

Development of a novel method for de novo sequencing of amino acid sequences by mass spectrometryPrincipal Investigator
- Principal Investigator
  
  Kawano Shin
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Toyama University of International Studies
Establishment of proteomics analysis methods using RNA-seq in the personal genomic eraPrincipal Investigator
- Principal Investigator
  
  Kawano Shin
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  大学共同利用機関法人情報・システム研究機構(機構本部施設等)

All 2023 2022 2021 2020 2018 2017 2016

All Journal Article Presentation

[Journal Article] Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work2023
- Author(s)
  Deutsch EW,Vizcaino JA,Jones AR,Binz PA,Lam H,Klein J,Bittremieux W,Perez-Riverol Y,Tabb DL,Walzer M,Ricard-Blum S,Hermjakob H,Neumann S,Mak TD,Kawano S,Mendoza L,Van Den Bossche T,Gabriels R,Bandeira N,Carver J,Pullman B,Sun Z,Hoffmann N,Shofstahl J,Zhu Y,Licata L,Quaglia F,Tosatto SCE,Orchard SE
- Journal Title
  
  Journal of Proteome Research
  
  Volume: 22 Issue: 2 Pages: 287-301
- DOI
  10.1021/acs.jproteome.2c00637
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms2022
- Author(s)
  LeDuc Richard D.、Deutsch Eric W.、Binz Pierre-Alain、Fellers Ryan T.、Cesnik Anthony J.、Klein Joshua A.、Van Den Bossche Tim、Gabriels Ralf、Yalavarthi Arshika、Perez-Riverol Yasset、Carver Jeremy、Bittremieux Wout、Kawano Shin、Pullman Benjamin、Bandeira Nuno、Kelleher Neil L.、Thomas Paul M.、Vizca?no Juan Antonio
- Journal Title
  
  Journal of Proteome Research
  
  Volume: 21 Issue: 4 Pages: 1189-1195
- DOI
  10.1021/acs.jproteome.1c00771
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] The ProteomeXchange consortium at 10 years: 2023 update2022
- Author(s)
  Deutsch EW、Bandeira N、Perez-Riverol Y、Sharma V、Carver JJ、Mendoza L、Kundu DJ、Wang S、Bandla C、Kamatchinathan S、Hewapathirana S、Pullman BS、Wertz J、Sun Z、Kawano S、Okuda S、Watanabe Y、MacLean B、MacCoss MJ、Zhu Y、Ishihama Y、Vizcaino JA
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 51 Issue: D1 Pages: D1539-D1548
- DOI
  10.1093/nar/gkac1040
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] Proteomics Standards Initiatives ProForma 2.0 Unifying the encoding of Proteoforms and Peptidoforms2021
- Author(s)
  Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche, Ralf Gabriels, Arshika Yalavarthi, Yasset Perez-Riverol, Jeremy Carver, Wout Bittremieux, Shin Kawano, Benjamin Pullman, Nuno Bandeira, Neil L. Kelleher, Paul M. Thomas, Juan Antonio Vizcaino
- Journal Title
  
  arXiv
  
  Volume: 2109 Pages: 1-61
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] Universal Spectrum Identifier for mass spectra2021
- Author(s)
  Deutsch Eric W.、Perez-Riverol Yasset、Carver Jeremy、Kawano Shin、Mendoza Luis、Van Den Bossche Tim、Gabriels Ralf、Binz Pierre-Alain、Pullman Benjamin、Sun Zhi、Shofstahl Jim、Bittremieux Wout、Mak Tytus D.、Klein Joshua、Zhu Yunping、Lam Henry、Vizca?no Juan Antonio、Bandeira Nuno
- Journal Title
  
  Nature Methods
  
  Volume: 18 Issue: 7 Pages: 768-770
- DOI
  10.1038/s41592-021-01184-6
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] Universal Spectrum Identifier for mass spectra2020
- Author(s)
  Deutsch Eric W., Perez-Riverol Yasset, Carver Jeremy, Kawano Shin, Mendoza Luis, Van Den Bossche Tim, Gabriels Ralf, Binz Pierre-Alain, Pullman Benjamin, Sun Zhi, Shofstahl Jim, Bittremieux Wout, Mak Tytus D., Klein Joshua, Zhu Yunping, Lam Henry, Vizcaino Juan Antonio, Bandeira Nuno
- Journal Title
  
  bioRxiv
  
  Volume: 415539 Pages: 1-4
- DOI
  10.1101/2020.12.07.415539
- Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Journal Article] The jPOST environment: an integrated proteomics data repository and database2018
- Author(s)
  Moriya Yuki、Kawano Shin、Okuda Shujiro、Watanabe Yu、Matsumoto Masaki、Takami Tomoyo、Kobayashi Daiki、Yamanouchi Yoshinori、Araki Norie、Yoshizawa Akiyasu C、Tabata Tsuyoshi、Iwasaki Mio、Sugiyama Naoyuki、Tanaka Satoshi、Goto Susumu、Ishihama Yasushi
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 47 Issue: D1 Pages: 1218-1224
- DOI
  10.1093/nar/gky899
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-17H05534, KAKENHI-PUBLICLY-17H06011, KAKENHI-PROJECT-16H04730, KAKENHI-PROJECT-16K00416, KAKENHI-PROJECT-17K19606, KAKENHI-PROJECT-16H05440, KAKENHI-PROJECT-19H03772
[Journal Article] The ProteomeXchange Consortium in 2017: supporting the cultural change in proteomics public data deposition.2017
- Author(s)
  Deutsch, E. W., Csordas, A., Sun, Z., Jarnuczak, A., Perez-Riverol, Y., Ternent, T., Campbell, D. S., Bernal-Llinares, M., Okuda, S., Kawano, S., Moritz, R. L., Carver, J. J., Wang, M., Ishihama, Y., Bandeira, N., Hermjakob, H., Vizcaíno, J. A.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 45 Issue: D1 Pages: D1100-D1106
- DOI
  10.1093/nar/gkw936
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26242088, KAKENHI-PROJECT-16K00416
[Journal Article] Proteomics Standards Initiative: Fifteen Years of Progress and Future Work2017
- Author(s)
  Deutsch Eric W.、Orchard Sandra、Binz Pierre-Alain、Bittremieux Wout、Eisenacher Martin、Hermjakob Henning、Kawano Shin、Lam Henry、Mayer Gerhard、Menschaert Gerben、Perez-Riverol Yasset、Salek Reza M.、Tabb David L.、Tenzer Stefan、Vizca?no Juan Antonio、Walzer Mathias、Jones Andrew R.
- Journal Title
  
  Journal of Proteome Research
  
  Volume: 16 Issue: 12 Pages: 4288-4298
- DOI
  10.1021/acs.jproteome.7b00370
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Journal Article] jPOSTrepo: an international standard data repository for proteomes.2017
- Author(s)
  Okuda S, Watanabe Y, Moriya Y, Kawano S, Yamamoto T, Matsumoto M, Takami T, Kobayashi D, Araki N, Yoshizawa AC, Tabata T, Sugiyama N, Goto S, Ishihama Y.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 45 Issue: D1 Pages: D1107-D1111
- DOI
  10.1093/nar/gkw1080
- NAID
  120006353864
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-15H01407, KAKENHI-PROJECT-26242088, KAKENHI-PROJECT-16H04730, KAKENHI-PROJECT-16K00416, KAKENHI-PROJECT-16K07118, KAKENHI-PROJECT-16K07198, KAKENHI-PROJECT-15K14383, KAKENHI-PROJECT-16H05440
[Presentation] プロテオームデータの収集と標準化2023
- Author(s)
  河野　信
- Organizer
  疾患プロテオミクス研究会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] Mass++ ver.4 -MS data viewer meets online databases-2022
- Author(s)
  Satoshi Tanaka, Masaki Murase, Masaki Kato, Hiroyuki Yamamoto, Tsuyoshi Tabata, Maiko Kusano, Shin Kawano, Susumu Goto, Yasushi Ishihama, Akiyasu C. Yoshizawa
- Organizer
  The HUPO 2022 Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] jPOSTrepoメタデータのSDRF化2021
- Author(s)
  有馬佳奈美、岡本瑠璃、小林大樹、吉沢明康、河野信
- Organizer
  トーゴーの日シンポジウム2021
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] jPOSTの現状とプロテミクスデータの標準化に向けた国際連携2021
- Author(s)
  河野信
- Organizer
  日本プロテオーム学会2021年大会
- Invited
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] The HUPO-PSI Universal Spectrum Identifier (USI) for mass spectra2021
- Author(s)
  Tim Van Den Bossche, Eric W. Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Ralf Gabriels, Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, Jim Shofstahl, Wout Bittremieux, Tytus D. Mak, Joshua Klein, Yunping Zhu, Henry Lam, Juan Antonio Vizcaino, and Nuno Bandeira
- Organizer
  HUPO reconnect 2021
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] jPOSTdb: COVID-19データベースの構築2021
- Author(s)
  吉沢明康，守屋勇樹，小林大樹，張智翔，奥田修二郎，田畑剛，河野信，幡野敦，高見知代，松本雅記，山ノ内祥訓，荒木令江，岩崎未央，杉山直幸，福島敦史，田中聡，五斗進，石濱泰
- Organizer
  トーゴーの日シンポジウム2021
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] An extension of Mass++ ver.4, a data viewer, for proteome analysis2020
- Author(s)
  Tanaka, S., Murase, M., Kato, M., Tabata, T., Kusano, M., Kawano, S., Goto, S., Ishihama, Y., Yoshizawa, A.C.
- Organizer
  ASMS 2020 Reboot
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H03245
[Presentation] プロテオーム統合データベースの機能深化2018
- Author(s)
  守屋勇樹、河野信、奥田修二郎、渡邉由、松本雅記、高見知代、小林大樹、山ノ内祥訓、荒木令江、吉沢明康、田畑剛、岩崎未央、杉山直幸、田中聡、五斗進、石濱泰
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] jPOST: 質量分析生データを最大限に活用するためのメタデータキュレーション2018
- Author(s)
  小林大樹、荒木令江、奥田修二郎、渡辺由、守屋勇樹、河野信、山本格、松本雅記、高見知代、吉沢明康、田畑剛、岩崎未央、杉山直幸、田中聡、五斗進、石濱泰
- Organizer
  Mass Spectrometry and Proteomics 2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] jPOSTプロジェクトが提供するプロテオミクスデータとその解析ツール2018
- Author(s)
  五斗進、守屋勇樹、河野信、奥田修二郎、渡邉由、松本雅記、高見知代、小林大樹、山ノ内祥訓、荒木令江、吉沢明康、田畑剛、岩崎未央、杉山直幸、田中聡、石濱泰
- Organizer
  第41回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] 機械学習に基づくペプチド由来イオンピークの新規検出手法2018
- Author(s)
  守屋勇樹、田畑剛、岩崎未央、河野信、五斗進、石濱泰、瀧川一学、吉沢明康
- Organizer
  第21回情報論的学習理論ワークショップ
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] OmicsDI RDF2017
- Author(s)
  Shin Kawano, Yasset Perez Riverol, Tobias Ternent, Yuki Moriya, Eric Deutsch, Michel Dumontier, Juan Antonio Vizcaino, Henning Hermjakob, and Susumu Goto
- Organizer
  16th Human Proteome Organization World Congress
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] プロテオームデータの標準化とデータベースの世界動向2017
- Author(s)
  河野信
- Organizer
  日本プロテオーム学会2017年大会
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] jPOST 再解析プロトコル:偽陽性と偽陰性の同時減少を目指す2017
- Author(s)
  吉沢明康、田畑剛、守屋勇樹、河野信、奥田修二郎、渡辺由、山本格、松本雅記、高見知代、小林大樹、荒木令江、杉山直幸、田中聡、五斗進、石濱泰
- Organizer
  日本プロテオーム学会2017年大会
- Invited
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] jPOST: プロテオーム統合データベースの開発2017
- Author(s)
  守屋勇樹、河野信、奥田修二郎、渡辺由、山本格、松本雅記、高見知代、小林大樹、荒木令江、吉沢明康、田畑剛、杉山直幸、田中聡、五斗進、石濱泰
- Organizer
  日本プロテオーム学会2017年大会
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] Controlling false discovery rate in accumulated public proteome dataset2017
- Author(s)
  Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, and Yasushi Ishihama
- Organizer
  65th Conference on Mass Spectrometry and Allied Topics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] Controlling false discovery rates on large-scale proteome datasets in jPOST2017
- Author(s)
  Yasuhi Ishihama, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Naoyuki Sugiyama, Satoshi Tanaka, and Susumu Goto
- Organizer
  16th Human Proteome Organization World Congress
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] プロテオーム統合データベース jPOST：再解析プロトコルの開発2016
- Author(s)
  吉沢明康、田畑剛、守屋勇樹、河野信、奥田修二郎、渡邉由、山本格、松本雅記、高見知世、小林大樹、荒木令江、杉山直幸、五斗進、石濱泰
- Organizer
  日本プロテオーム学会2016年大会
- Place of Presentation
  北里大学（東京都・港区）
- Year and Date
  2016-07-28
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] 質量スペクトルはデータベース検索“グレーゾーン”を明瞭化するか2016
- Author(s)
  吉沢明康、田畑剛、守屋勇樹、河野信、奥田修二郎、山本格、松本雅記、小林大樹、荒木令江、杉山直幸、五斗進、石濱泰
- Organizer
  日本質量分析学会第64回質量分析総合討論会
- Place of Presentation
  ホテル阪急エキスポパーク（大阪府・吹田市）
- Year and Date
  2016-05-18
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] プロテオームデータベース jPOST の開発2016
- Author(s)
  五斗進、奥田修二郎、渡邉由、守屋勇樹、河野信、山本格、松本雅記、高見知代、小林大樹、荒木令江、吉沢明康、田畑剛、杉山直幸、石濱泰
- Organizer
  日本プロテオーム学会2016年大会
- Place of Presentation
  北里大学（東京都・港区）
- Year and Date
  2016-07-28
- Invited
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] 生命システムを俯瞰するための質量分析情報解析技術とデータベースの活用2016
- Author(s)
  河野信
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県・横浜市）
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] Implementation of flexible search for proteomics metadata2016
- Author(s)
  Shin Kawano, Yuki Moriya, Tobias Ternent, Juan Antonio Vizcaino, Eric Deutsch
- Organizer
  15th Human Proteome Organization World Congress
- Place of Presentation
  Taipei International Convention Center（台湾・台北）
- Year and Date
  2016-09-18
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K00416
[Presentation] プロテオームインフォマティクス＆システムズバイオロジー研究への招待2016
- Author(s)
  河野信、荒木令江
- Organizer
  日本プロテオーム学会2016年大会
- Place of Presentation
  北里大学（東京都・港区）
- Year and Date
  2016-07-28
- Data Source
  KAKENHI-PROJECT-16K00416

1. 岩崎未央 (10722811)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
2. 小林大樹 (20448517)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
3. 吉沢明康 (70551159)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
4. KAWANO Takeshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
5. 奥田修二郎

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
6. 松本雅記

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results

KAWANO Shin 河野 信

Kawano Shin 河野 信

Research Projects

Research Products

Co-Researchers

Development of a novel method for de novo sequencing of amino acid sequences by mass spectrometryPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Establishment of proteomics analysis methods using RNA-seq in the personal genomic eraPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The ProteomeXchange consortium at 10 years: 2023 update2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Proteomics Standards Initiatives ProForma 2.0 Unifying the encoding of Proteoforms and Peptidoforms2021

Author(s)

Journal Title

Data Source

[Journal Article] Universal Spectrum Identifier for mass spectra2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Universal Spectrum Identifier for mass spectra2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The jPOST environment: an integrated proteomics data repository and database2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] The ProteomeXchange Consortium in 2017: supporting the cultural change in proteomics public data deposition.2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Proteomics Standards Initiative: Fifteen Years of Progress and Future Work2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] jPOSTrepo: an international standard data repository for proteomes.2017

Author(s)

Journal Title

DOI

NAID

Data Source

[Presentation] プロテオームデータの収集と標準化2023

Author(s)

Organizer

Data Source

[Presentation] Mass++ ver.4 -MS data viewer meets online databases-2022

Author(s)

Organizer

Data Source

[Presentation] jPOSTrepoメタデータのSDRF化2021

Author(s)

Organizer

Data Source

[Presentation] jPOSTの現状とプロテミクスデータの標準化に向けた国際連携2021

KAWANO Shin 河野信

Kawano Shin 河野信