OBAYASHI Takeshi 大林武

Researcher Number	50397048
Other IDs	https://orcid.org/0000-0002-3106-722X
Affiliation (Current)	2022: 東北大学, 情報科学研究科, 准教授
Affiliation (based on the past Project Information) *help	2012 – 2020: 東北大学, 情報科学研究科, 准教授 2009 – 2010: Tohoku University, 大学院・情報科学研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 43060:System genome science-related / Plant molecular biology/Plant physiology / System genome science Except Principal Investigator Biological Sciences / Developmental biology / Plant molecular biology/Plant physiology
Keywords	Principal Investigator 遺伝子共発現 / データベース / バイオインフォマティクス / シロイヌナズナ / 環境応答 / マイクロアレイ / ネットワーク生物学 / 共発現データベース / ゲノム進化 / シングルセル … More / トランスクリプトーム / 遺伝子ネットワーク / 生命情報科学 / 比較ゲノム … More Except Principal Investigator 植物 / 細胞壁 / 植物細胞壁 / 情報処理 / 共発現データベース / セルロース / キシログルカン / XTH / CET / 細胞壁モデル / 酵素 / 共同研究 / 研究支援 / 若手育成 / 総括班 / アウトリーチ / 発生制御 / シグナル分子 / 生物間相互作用 / 糖質分析 / オミクス / イメージング / 支援センター / データベース / 公開展示 / 膜交通 / 細胞骨格 / 植物免疫 / 高次構造 / セルロース繋ぎ換え反応 / 細胞壁再生系 / ネナシカズラ / トランスクリプトーム / beta1,3/1,4グルカン / クチクラ / 倍数体 / PME / ペクチンメチルエステラーゼ / 共発現 / 神経幹細胞 / 細胞分化 / 翻訳後タンパク質修飾 / タンパク質切断制御 / タンパク質相互作用 / 幹細胞 / ニューロン分化 / 大脳皮質発生 / タンパク質発現制御 / プロトプラスト / 細胞壁再生 / 酵素反応 / セルロース繋ぎ換え酵素 Less

人間活動に伴う植物の短期的適応進化の学際統合的理解Principal Investigator
- Principal Investigator
  
  大林武
- Project Period (FY)
  2020
- Research Category
  
  Fund for the Promotion of Joint International Research (Fostering Joint International Research (A))
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Tohoku University
リファレンストランスクリプトーム構築に基づく遺伝子共発現ネットワーク解析の高度化Principal Investigator
- Principal Investigator
  
  大林武
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Tohoku University
A new molecular model for plant cell wall based on a new enzyme, cellulose endotransglucosylase
- Principal Investigator
  
  Nishitani Kazuhiko
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Kanagawa University
  Tohoku University
Analysis of cell-cell communication using comparison of gene co-expression for different tissuesPrincipal Investigator
- Principal Investigator
  
  Obayashi Takeshi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  System genome science
- Research Institution
  Tohoku University
Novel molecular mechanism collaborating stem neural stem cell mainteinance and differentiation
- Principal Investigator
  
  Katsuyama Yu
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Developmental biology
- Research Institution
  Shiga University of Medical Science
  Tohoku University
The plant cell wall as information processing system
- Principal Investigator
  
  Nishitani Kazuhiko
- Project Period (FY)
  2012 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Tohoku University
Structure and dynamics of the plant cell wall as information processing system
- Principal Investigator
  
  Nishitani Kazuhiko
- Project Period (FY)
  2012 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Tohoku University
Construction of ATTED-III, Gene Coexpression Database for ArabidopsisPrincipal Investigator
- Principal Investigator
  
  OBAYASHI Takeshi
- Project Period (FY)
  2009 – 2010
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Tohoku University

All 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 Other

All Journal Article Presentation

[Journal Article] ATTED-II in 2018: A Plant Coexpression Database based on Investigation of Statistical Property of the Mutual Rank Index2018
- Author(s)
  Obayashi T, Aoki Y, Tadaka S, Kagaya Y, Kinoshita K.
- Journal Title
  
  Plant Cell Physiology
  
  Volume: 59
- DOI
  10.1093/pcp/pcx191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863
[Journal Article] Arabinogalactan Proteins Accumulate in the Cell Walls of Searching Hyphae of the Stem Parasitic Plants,Cuscuta campestris and Cuscuta japonica.2017
- Author(s)
  Hozumi A, Bera S, Fujiwara D, Obayashi T, Yokoyama R, Nishitani K, Aoki K
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 58 Pages: 1868-1877
- DOI
  10.1093/pcp/pcx121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07389, KAKENHI-PROJECT-17K19374, KAKENHI-WRAPUP-17H06066, KAKENHI-PROJECT-17H03691
[Journal Article] Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium.2016
- Author(s)
  Okubo-Kurihara, E., Ohtani, M., Kurihara, Y., Kakegawa, K., Kobayashi, M., Nagata, N., Komatsu, T., Kikuchi, J., Cutler, S., Demura,T.and Matsui, M.
- Journal Title
  
  Scientific Reports
  
  Volume: 6 Pages: 34602-34602
- DOI
  10.1038/srep34602
- NAID
  120005867185
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25113006, KAKENHI-PUBLICLY-15H01235, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114002, KAKENHI-PROJECT-26440170
[Journal Article] Plant Aurora kinases interact with and phosphorylate transcription2016
- Author(s)
  Takagi, M., Sakamoto, T.,Suzuki, R.,Nemoto, K., Obayashi, T., Matsunaga, T. M., Hirakawa, T., Kurihara, D., Nariai, Y., Urano, T., Sawasaki, T., Matsunaga, S.
- Journal Title
  
  J Plant Res
  
  Volume: 129 Pages: 1165-1178
- DOI
  10.1007/s10265-016-0860-x
- NAID
  40020988231
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-15H05962, KAKENHI-PLANNED-16H06579, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005, KAKENHI-PROJECT-16H04729, KAKENHI-PROJECT-16J06389, KAKENHI-PROJECT-26291067, KAKENHI-PROJECT-16K18570
[Journal Article] ALCOdb: Gene Coexpression Database for Microalgae2016
- Author(s)
  Aoki Y, Okamura Y, Ohta H, Kinoshita K, Obayashi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 57
- DOI
  10.1093/pcp/pcv190
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression2016
- Author(s)
  Aoki Y, Okamura Y, Tadaka S, Kinoshita K, Obayashi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 57
- DOI
  10.1093/pcp/pcv165
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-PROJECT-15K20863, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] Plant and Cell Physiology's 2015 Database Issue.2015
- Author(s)
  Ohyanagi H, Obayashi T, Yano K.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 56 Pages: 4-6
- DOI
  10.1093/pcp/pcu206
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] Transcriptional repression by MYB3R proteins regulates plant organ growth2015
- Author(s)
  Kobayashi K, Suzuki T, Iwata E, Nakamichi N, Suzuki T, Chen P, Ohtani M, Ishida T, Hosoya H, Müller S, Leviczky T, Pettkó-Szandtner A, Darula Z, Iwamoto A, Nomoto M, Tada Y, Higashiyama T, Demura T, Doonan JH, Hauser MT, Sugimoto K, Umeda M, Magyar Z, Bögre L, Ito M
- Journal Title
  
  EMBO J
  
  Volume: 34 Pages: 1992-2007
- DOI
  10.15252/embj.201490899
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25440134, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114002, KAKENHI-PUBLICLY-26113509, KAKENHI-PROJECT-13J10800, KAKENHI-PROJECT-26650099, KAKENHI-PROJECT-26660290, KAKENHI-PROJECT-25291062, KAKENHI-PROJECT-26291061, KAKENHI-PROJECT-26291064, KAKENHI-ORGANIZER-25113001, KAKENHI-PROJECT-26291058
[Journal Article] A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem2015
- Author(s)
  Kinoshita, A, Hove, C.A., Tabata, R., Yamada, M., Shimizu, N., Ishida, T., Yamaguchi K., Shigenobu, S., Takebayashi, Y., Iuchi, S., Kobayashi, M., Kurata, T., Wada, T., Seo, M., Hasebe, M., Bilou, I., Fukuda, H., Scheres, B., Heidstra, R., Sawa, S.
- Journal Title
  
  Development
  
  Volume: 142 Pages: 1660-1670
- DOI
  10.1242/dev.113167
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-24114001, KAKENHI-PROJECT-24570051, KAKENHI-PROJECT-24770077, KAKENHI-PUBLICLY-25119713, KAKENHI-PROJECT-25440134, KAKENHI-PROJECT-26650143, KAKENHI-PROJECT-26650102, KAKENHI-PLANNED-22128008, KAKENHI-PLANNED-15H05958, KAKENHI-PLANNED-24114009, KAKENHI-PROJECT-24370024, KAKENHI-PROJECT-23227001
[Journal Article] Comparison of gene coexpression profiles and construction of conserved gene networks to find functional modules.2015
- Author(s)
  Okamura Y, Obayashi T, Kinoshita K.
- Journal Title
  
  PLoS One
  
  Volume: 10
- DOI
  10.1371/journal.pone.0132039
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K18464, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.2015
- Author(s)
  Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S1, Narise T, Kinoshita K.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 43
- DOI
  10.1093/nar/gku1163
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22136005, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005, KAKENHI-PROJECT-24570176
[Journal Article] ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants.2014
- Author(s)
  Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Yuichi Aoki, Matsuyuki Shirota and Kengo Kinoshita
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 55
- DOI
  10.1093/pcp/pct178
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22136005, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005, KAKENHI-PROJECT-24570176
[Journal Article] COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.2013
- Author(s)
  Obayashi T, Okamura Y, Ito S, Tadaka S, Motoike IN, Kinoshita K
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: 41(Database Issue) Pages: 1014-1020
- DOI
  10.1093/nar/gks1014
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24570176, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005
[Journal Article] bHLH transcription factors JA-ASSOCIATED MYC2-LIKE 1, JAM2 and JAM3 are negative regulators of jasmonate responses in Arabidopsis.2013
- Author(s)
  Sasaki-Sekimoto, Y., Jikumaru, Y., Obayashi, T., Saito, H., Masuda, S., Kamiya, Y., Ohta, H. and Shirasu, K.
- Journal Title
  
  Plant Physiol.
  
  Volume: 163 Pages: 291-304
- DOI
  10.1104/pp.113.220129
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23770038, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114005, KAKENHI-PROJECT-24228008, KAKENHI-PUBLICLY-25120709
[Journal Article] Role of the G-box element in regulation of chlorophyll biosynthesis in Arabidopsis roots2012
- Author(s)
  Kobayashi, K., Obayashi, T., Masuda, T.
- Journal Title
  
  Plant Signaling and Behavior
  
  Volume: 7 Pages: 922-926
- DOI
  10.4161/psb.20760
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24570042, KAKENHI-PROJECT-24770055, KAKENHI-PLANNED-24114005
[Journal Article] Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis.2012
- Author(s)
  Kobayashi K
- Journal Title
  
  Plant Cell
  
  Volume: 24 Pages: 1081-1095
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-24114005
[Journal Article] Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis.2012
- Author(s)
  Kobayashi, K.
- Journal Title
  
  Plant Cell
  
  Volume: 24 Pages: 1081-1095
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-24114001
[Journal Article] COXPRESdb : a database to compare gene coexpression in seven model animals.2011
- Author(s)
  Obayashi T, Kinoshita K
- Journal Title
  
  Nucleic Acids Res 39
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] ATTED-II updates : condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants.2011
- Author(s)
  Obayashi, et al.
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: 52 Pages: 213-219
- NAID
  10029708387
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Kinoshita K ATTED-II updates : condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants.2011
- Author(s)
  Obayashi T, Nishida K, Kasahara K
- Journal Title
  
  Plant Cell Physiol 52
  
  Pages: 213-219
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] 共発現情報から見る遺伝子機能ネットワーク2011
- Author(s)
  大林武、木下賢吾
- Journal Title
  
  化学と生物[KASEAA] 49
  
  Pages: 48-56
- NAID
  10027729287
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] COXPRESdb : a database to compare gene coexpression in seven model animals2011
- Author(s)
  Obayashi, Kinoshita
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 39 Pages: 1016-1022
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] 共発現情報から見る遺伝子機能ネットワーク2011
- Author(s)
  大林武、木下賢吾
- Journal Title
  
  化学と生物
  
  Volume: 49 Pages: 48-66
- NAID
  10027729287
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Coexpression landscape in ATTED-II : usage of gene list and gene network for various types of pathways.2010
- Author(s)
  Obayashi T, Kinoshita K
- Journal Title
  
  J. Plant Research 123
  
  Pages: 311-319
- NAID
  10027218882
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.2009
- Author(s)
  Kinoshita K, Obayashi T
- Journal Title
  
  Bioinformatics 25
  
  Pages: 2677-2684
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression.2009
- Author(s)
  Obayashi T, Kinoshita K
- Journal Title
  
  DNA Research 16
  
  Pages: 249-260
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis2009
- Author(s)
  Kinoshita, Obayashi
- Journal Title
  
  Bioinformatics 25
  
  Pages: 2677-2684
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression2009
- Author(s)
  Obayashi, Kinoshita
- Journal Title
  
  DNA Research 16
  
  Pages: 249-260
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Journal Article] Coexpression landscape in ATTED-II : usage of gene list and gene network for various types of pathways
- Author(s)
  Obayashi, Kinoshita
- Journal Title
  
  Journal of Plant Research (未定, 印刷中)
- NAID
  10027218882
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] ATTED-II v10.2: a Plant Coexpression Database Providing Logit Score of Ensemble Mutual Rank as Coexpression Index to Enhance Usability for Genome-Wide Analyses.2021
- Author(s)
  Takeshi Obayashi and Yuichi Aoki
- Organizer
  第62回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] Exploration of Gene Expression Latent Space in Higher Plants by using Generative Models.2021
- Author(s)
  Yuichi Aoki, Takeshi Obayashi
- Organizer
  第62回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] Development of Coexpression-guided Generative Model for Plant Gene Expression Inference2020
- Author(s)
  Yuichi Aoki, Shinichi Yamazaki, and Takeshi Obayashi
- Organizer
  28th Conference on International Society for Computational Biology (ISMB2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] ATTED-II v10: a Plant Coexpression Database Providing Logit Score of Ensemble Mutual Rank as Coexpression Index to Enhance Usability for Genome-Wide Analyses.2020
- Author(s)
  Takeshi Obayashi, Yuichi Aoki
- Organizer
  日本植物生理学会年会（大阪大会）
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] Comparison of summarization methods of co-expressed gene list to predict gene function2020
- Author(s)
  Takeshi Obayashi, Yuichi Aoki, and Kengo Kinoshita
- Organizer
  28th Conference on International Society for Computational Biology (ISMB2020)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] 全ゲノム遺伝子共発現情報の可視化手法の検討2020
- Author(s)
  Takeshi Obayashi, Yuichi Aoki, and Kengo Kinoshita
- Organizer
  第9回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] Integration and evaluation of scRNAseq-, bulk RNAseq and microarray-based gene coexpression data2019
- Author(s)
  Takeshi Obayashi, Yuichi Aoki, Kengo Kinoshita
- Organizer
  ISMB/ECCB 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K06624
[Presentation] 植物種間情報伝達を介したアメリカネナシカズラ吸器における維管束新生機構の探索2018
- Author(s)
  加賀悠樹，大林武，横山隆亮，黒羽剛，大谷美沙都，出村拓，西谷和彦
- Organizer
  日本植物学会第82回大会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] アメリカネナシカズラのゲノム解読による寄生植物の適応進化メカニズムの解明2018
- Author(s)
  横山隆亮，大林武，鳴川秀樹，加賀悠樹，加藤萌木，黒羽剛，西谷和彦
- Organizer
  第59回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] Insight into strategies for plant-plant parasitism in Cuscuta campestris based on genome sequencing.2018
- Author(s)
  Narukawa, H., Yokoyama, R., Obayashi, T., Kaga, Y., Kato, M., Kuroha, T., Nishitani, K.
- Organizer
  第59回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] 寄生植物　アメリカネナシカズラの花成制御におけるFTの機能2018
- Author(s)
  加藤萌木，横山隆亮，黒羽剛，大林武，阿部光知，西谷和彦
- Organizer
  日本植物学会第82回大会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] A revised coexpression calculation procedure in ATTED-II version 9 with batch-normalization and bagging methods.2018
- Author(s)
  Takeshi Obayashi, Yuichi Aoki and Kengo Kinoshita
- Organizer
  the 59th Annual Meeting of the Japanese Society of Plant Physiologists
- Data Source
  KAKENHI-PROJECT-15K18464
[Presentation] 比較ゲノム解析から見えてきた茎寄生植物ネナシカズラの形態形成メカニズム2017
- Author(s)
  横山隆亮，大林武，鳴川秀樹，加賀悠樹，加藤萌木，黒羽剛，西谷和彦
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] 茎寄生植物アメリカネナシカズラにおける核内倍加を介した吸器形成制御メカニズムの解析2017
- Author(s)
  鳴川秀樹,加賀悠樹,柴田航希,倉田哲也,大林武,黒羽剛,横山隆亮,西谷和彦
- Organizer
  第58回日本植物生理学会年会
- Place of Presentation
  鹿児島大学(鹿児島県鹿児島市)
- Year and Date
  2017-03-16
- Data Source
  KAKENHI-PLANNED-24114005
[Presentation] Sample Alignment of Different Species toward Species-Specific Coexpression Analyses2017
- Author(s)
  Takeshi Obayashi, Yuichi Aoki, Shu Tadaka, Yasunobu Okamura, Kengo Kinoshita
- Organizer
  the 58th Annual Meeting of the Japanese Society of Plant Physiologists
- Data Source
  KAKENHI-PROJECT-15K18464
[Presentation] ネナシカズラのゲノムから読み解く茎寄生の生命戦略2017
- Author(s)
  西谷和彦，横山隆亮，大林武他
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] 茎寄生植物アメリカネナシカズラにおける核内倍加を介した吸器形成制御メカニズムの解析2017
- Author(s)
  鳴川秀樹,加賀悠樹,柴田航希,倉田哲也,大林武,黒羽剛,横山隆亮,西谷和彦
- Organizer
  第58回日本植物生理学会年会
- Place of Presentation
  鹿児島大学（鹿児島県鹿児島市）
- Year and Date
  2017-03-16
- Data Source
  KAKENHI-ORGANIZER-24114001
[Presentation] A Model for the Molecular Mechanism of Vascular Development in the Haustorium of the Parasitic Plant Cuscuta Campestris.2017
- Author(s)
  Kaga Y., Obayashi T., Yokoyama R., Nishitani K.
- Organizer
  Taiwan-Japan Plant Biology 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03691
[Presentation] Gene age determines the fundamental structure of the gene coexpression network.2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  Intelligent Systems for Molecular Biology 2016
- Place of Presentation
  Orlando, Florida, U.S.A
- Year and Date
  2016-07-11
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K18464
[Presentation] 茎寄生植物アメリカネナシカズラCuscuta campestrisの吸器発生における維管束形成メカニズムの解析2016
- Author(s)
  加賀悠樹,柴田航希,倉田哲也,大林武,横山隆亮,西谷和彦
- Organizer
  東北植物学会第６回大会
- Place of Presentation
  東北大学(宮城県仙台市)
- Year and Date
  2016-12-10
- Data Source
  KAKENHI-PLANNED-24114005
[Presentation] 茎寄生植物アメリカネナシカズラの吸器形成における局所的な核内倍加の役割2016
- Author(s)
  鳴川秀樹,加賀悠樹,柴田航希,倉田哲也,大林武,黒羽剛,横山隆亮,西谷和彦
- Organizer
  東北植物学会第６回大会
- Place of Presentation
  東北大学(宮城県仙台市)
- Year and Date
  2016-12-10
- Data Source
  KAKENHI-PLANNED-24114005
[Presentation] 茎寄生植物アメリカネナシカズラの吸器形成における局所的な核内倍加の役割2016
- Author(s)
  鳴川秀樹,加賀悠樹,柴田航希,倉田哲也,大林武,黒羽剛,横山隆亮,西谷和彦
- Organizer
  東北植物学会第６回大会
- Place of Presentation
  東北大学（宮城県仙台市）
- Year and Date
  2016-12-10
- Data Source
  KAKENHI-ORGANIZER-24114001
[Presentation] 茎寄生植物アメリカネナシカズラ吸器形成における維管束分化メカニズムの解明2016
- Author(s)
  加賀悠樹，柴田航希，倉田哲也，大林武，横山隆亮，西谷和彦
- Organizer
  日本植物学会第80回大会
- Place of Presentation
  沖縄コンベンションセンター(沖縄県宜野湾市)
- Year and Date
  2016-09-16
- Data Source
  KAKENHI-ORGANIZER-24114001
[Presentation] 茎寄生植物アメリカネナシカズラCuscuta campestrisの吸器発生における維管束形成メカニズムの解析2016
- Author(s)
  加賀悠樹,柴田航希,倉田哲也,大林武,横山隆亮,西谷和彦
- Organizer
  東北植物学会第６回大会
- Place of Presentation
  東北大学（宮城県仙台市）
- Year and Date
  2016-12-10
- Data Source
  KAKENHI-ORGANIZER-24114001
[Presentation] Meta-analysis of gene coexpression in ATTED-II toward species-specific coexpression analyses2016
- Author(s)
  大林武，青木裕一，岡村容伸，田高周，木下賢吾
- Organizer
  日本植物生理学会年会
- Place of Presentation
  岩手大学（岩手）
- Year and Date
  2016-03-17
- Data Source
  KAKENHI-PROJECT-15K18464
[Presentation] 茎寄生植物アメリカネナシカズラ吸器発生過程における核内倍加の役割2016
- Author(s)
  鳴川秀樹，加賀悠樹，柴田航希，倉田哲也，大林武，横山隆亮，西谷和彦
- Organizer
  日本植物学会第80回大会
- Place of Presentation
  沖縄コンベンションセンター(沖縄県宜野湾市)
- Year and Date
  2016-09-16
- Data Source
  KAKENHI-ORGANIZER-24114001
[Presentation] 茎寄生植物アメリカネナシカズラ吸器発生過程における核内倍加の役割2016
- Author(s)
  鳴川秀樹，加賀悠樹，柴田航希，倉田哲也，大林武，横山隆亮，西谷和彦
- Organizer
  日本植物学会第80回大会
- Place of Presentation
  沖縄コンベンションセンター(沖縄県宜野湾市)
- Year and Date
  2016-09-16
- Data Source
  KAKENHI-PLANNED-24114005
[Presentation] Impact of Evolutionary Age on Gene Coexpression Network and Gene Functional Relationship2016
- Author(s)
  Yuichi Aoki, Takeshi Obayashi, Kengo Kinoshita
- Organizer
  第39回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Year and Date
  2016-12-01
- Invited
- Data Source
  KAKENHI-PROJECT-15K18464
[Presentation] 茎寄生植物アメリカネナシカズラ吸器形成における維管束分化メカニズムの解明2016
- Author(s)
  加賀悠樹，柴田航希，倉田哲也，大林武，横山隆亮，西谷和彦
- Organizer
  日本植物学会第80回大会
- Place of Presentation
  沖縄コンベンションセンター(沖縄県宜野湾市)
- Year and Date
  2016-09-16
- Data Source
  KAKENHI-PLANNED-24114005
[Presentation] How to measure the similarity of gene expression patterns to identify gene function2011
- Author(s)
  Obayashi T
- Organizer
  QBIC2011 Bio-Informatics Workshop
- Place of Presentation
  東京理科大学
- Year and Date
  2011-03-11
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] How to measure the similarity of gene expression patterns to identify gene function2011
- Author(s)
  Takeshi Obayashi
- Organizer
  IC-QBIC2011 Bio-Informatics Workshop
- Place of Presentation
  Tokyo University of Science
- Year and Date
  2011-03-11
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] ATTED-II ver6:遺伝子共発現データの条件比較、種間比較2011
- Author(s)
  大林武、木下賢吾
- Organizer
  第52回日本植物生理学会年会
- Place of Presentation
  東北大学
- Year and Date
  2011-03-22
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] Rank of Correlation Coefficient Is a Comparable Measure of Gene Coexpression2010
- Author(s)
  Obayashi T, Kinoshita K
- Organizer
  The 2010 Annual Conference of Japanese Society for Bioinformatics
- Place of Presentation
  九州大学
- Year and Date
  2010-12-13
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression2010
- Author(s)
  Obayashi T, Kinoshita K
- Organizer
  Asian Young Researchers Conference on Computational and Omics Biology 2010
- Place of Presentation
  台南、台湾
- Year and Date
  2010-03-10
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] Number of microarray samples to construct effective gene coexpression data2010
- Author(s)
  Obayashi T, Kinoshita K
- Organizer
  第51回日本植物生理学会年会
- Place of Presentation
  熊本大学
- Year and Date
  2010-03-20
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression2010
- Author(s)
  Takeshi Obayashi
- Organizer
  Asian Young Researchers Conference on Computational and Omics Biology 2010
- Place of Presentation
  National Cheng Kung University, Taiwan
- Year and Date
  2010-03-11
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] COXPRESdb : a gene coexpression database for 7 animal species2010
- Author(s)
  Obayashi, Kinoshita
- Organizer
  The Asian Young Researchers Conference on Computational and Omics Biology 2010
- Place of Presentation
  Biopolis, Buona Vista, Singapore
- Year and Date
  2010-12-01
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] COXPRESdb : a gene coexpression database for 7 animal species2010
- Author(s)
  Obayashi T, Kinoshita K
- Organizer
  4th Asian Young Researchers Conference on Computational and Omics Biology
- Place of Presentation
  シンガポール、シンガポール共和国
- Year and Date
  2010-12-01
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] Rank of Correlation Coefficient Is a Comparable Measure of Gene Coexpression2010
- Author(s)
  Obayashi, Kinoshita
- Organizer
  The 2010 Annual Conference of Japanese Society for Bioinformatics (JSBi2010)
- Place of Presentation
  Centennial Hall Kyushu University School of Medicine
- Data Source
  KAKENHI-PROJECT-21770035
[Presentation] COXPRESdb : A database of coexpressed gene networks for human, mouse and rat2009
- Author(s)
  Obayashi T, Kinoshita K
- Organizer
  International congress of physiological sciences
- Place of Presentation
  京都
- Year and Date
  2009-07-27
- Data Source
  KAKENHI-PROJECT-21770035

1. Nishitani Kazuhiko (60164555)

# of Collaborated Projects: 3 results

# of Collaborated Products: 18 results
2. YOKOYAMA Ryusuke (90302083)

# of Collaborated Projects: 2 results

# of Collaborated Products: 11 results
3. KUROHA Takeshi (50415155)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
4. 工藤光子 (90594078)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. OKADA Kiyotaka (50101093)

# of Collaborated Projects: 1 results

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6. SAMEJIMA Masahiro (30162530)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. NISHIMURA Mikio (80093061)

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8. HASEBE Mitsuyasu (40237996)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
9. FUKUDA Hiroo (10165293)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
10. Kinoshita Kengo (60332293)

# of Collaborated Projects: 1 results

# of Collaborated Products: 12 results
11. Katsuyama Yu (10359862)

# of Collaborated Projects: 1 results

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12. IGARASHI Kazuhiko (00250738)

# of Collaborated Projects: 1 results

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13. 出村拓 (40272009)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
14. 澤進一郎 (00315748)

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15. 佐藤忍 (70196236)

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16. 上田貴志 (10311333)

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17. 橋本隆 (80180826)

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18. 馳澤盛一郎 (40172902)

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19. 五十嵐圭日子 (80345181)

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20. 山口信次郎 (10332298)

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21. 円谷陽一 (10142233)

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22. 相田光宏 (90311787)

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23. 寺島俊雄 (20101892)

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24. KOBAYASHI Megumi

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25. NAKAMICHI Norihito

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26. SAKAMOTO Takuya

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27. SAKAKIBARA Keiko

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28. SHIGENOBU Shuji

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29. YAMAGUCHI Katsushi

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30. 増田建

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31. 小林康一

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32. 青木裕一

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33. 松井南

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34. 大谷美沙都

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35. 永田典子

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36. 石田喬志

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37. 杉本慶子

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38. 鈴木孝征

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39. 増田真二

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40. 白須賢

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41. 松永幸大

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42. 澤崎達也

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43. 根本圭一郎

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44. 倉田哲也

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OBAYASHI Takeshi 大林 武

Research Projects

Research Products

Co-Researchers

人間活動に伴う植物の短期的適応進化の学際統合的理解Principal Investigator

Principal Investigator

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リファレンストランスクリプトーム構築に基づく遺伝子共発現ネットワーク解析の高度化Principal Investigator

Principal Investigator

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Research Institution

A new molecular model for plant cell wall based on a new enzyme, cellulose endotransglucosylase

Principal Investigator

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Research Institution

Analysis of cell-cell communication using comparison of gene co-expression for different tissuesPrincipal Investigator

Principal Investigator

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Novel molecular mechanism collaborating stem neural stem cell mainteinance and differentiation

Principal Investigator

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The plant cell wall as information processing system

Principal Investigator

Project Period (FY)

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Research Institution

Structure and dynamics of the plant cell wall as information processing system

Principal Investigator

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Review Section

Research Institution

Construction of ATTED-III, Gene Coexpression Database for ArabidopsisPrincipal Investigator

Principal Investigator

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[Journal Article] ATTED-II in 2018: A Plant Coexpression Database based on Investigation of Statistical Property of the Mutual Rank Index2018

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Arabinogalactan Proteins Accumulate in the Cell Walls of Searching Hyphae of the Stem Parasitic Plants,Cuscuta campestris and Cuscuta japonica.2017

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium.2016

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] Plant Aurora kinases interact with and phosphorylate transcription2016

Author(s)

Journal Title

DOI

NAID

Data Source

[Journal Article] ALCOdb: Gene Coexpression Database for Microalgae2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression2016

OBAYASHI Takeshi 大林武