Kawata Kentaro 川田健太郎

Researcher Number	50825007
Other IDs	https://orcid.org/0000-0002-6481-0497
Affiliation (Current)	2026: 国立研究開発法人産業技術総合研究所, セルフケア実装研究センター, 主任研究員 2026: 国立研究開発法人産業技術総合研究所, 生命工学領域, 研究グループ付
Affiliation (based on the past Project Information) *help	2026: 国立研究開発法人産業技術総合研究所, 生命工学領域, 研究グループ付 2022 – 2024: 国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 2019 – 2021: 東京大学, アイソトープ総合センター, 特任助教
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Basic Section 49050:Bacteriology-related
Keywords	Principal Investigator RNAダイナミクス / RNA分解制御 / 転写制御 / 代謝標識 / 遺伝子制御ネットワーク / 細胞分化 / 情報理論 / 転写速度推定 / single-cell RNA-seq / 薬剤耐性 / 遺伝子発現制御ネットワーク / 情報量 / サルモネラ菌

一細胞NGS解析と深層学習の融合による超並列プロテオミクス解析技術の構築Principal Investigator
- Principal Investigator
  
  川田健太郎
- Project Period (FY)
  2026 – 2030
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
一細胞転写計測を用いた遺伝子制御ネットワークの動的特性の解明Principal Investigator
- Principal Investigator
  
  川田健太郎
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Elucidation of drug-resistant mechanism in Salmonella infection by construction of gene regulatory networkPrincipal Investigator
- Principal Investigator
  
  Kawata Kentaro
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  The University of Tokyo

All 2025 2024 2023 2021 2020 2019

All Journal Article Presentation Book

[Book] Epitranscriptomics（Regulation of RNA Stability Through RNA Modification）2021
- Author(s)
  Kawata Kentaro、Akimitsu Nobuyoshi
- Total Pages
  632
- Publisher
  Springer
- ISBN
  9783030716127
- Data Source
  KAKENHI-PROJECT-19K16635
[Journal Article] Fragile X messenger ribonucleoprotein 1 (FMRP) regulates glycolytic gene expression under chronic hypoxia in HCT116 cells2025
- Author(s)
  Ogura Yoko、Sun Xiaoning、Zhang Zaijun、Kawata Kentaro、Wu Jinyu、Matsubara Ryuma、Ozeki Atsuko Nakanishi、Taniue Kenzui、Onoguchi-Mizutani Rena、Adachi Shungo、Nakayama Koh、Goda Nobuhito、Akimitsu Nobuyoshi
- Journal Title
  
  Scientific Reports
  
  Volume: 15 Issue: 1 Pages: 13273-13273
- DOI
  10.1038/s41598-025-91828-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K24938
[Journal Article] Time‐series transcriptomics reveals distinctive mRNA expression dynamics associated with gene ontology specificity and protein expression in skeletal muscle after electrical stimulation‐induced resistance exercise2024
- Author(s)
  Kusano Tatsuya、Sotani Yuta、Takeda Reo、Hatano Atsushi、Kawata Kentaro、Kano Ryotaro、Matsumoto Masaki、Kano Yutaka、Hoshino Daisuke
- Journal Title
  
  The FASEB Journal
  
  Volume: 38 Issue: 22
- DOI
  10.1096/fj.202401420rr
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-20H05930, KAKENHI-PROJECT-24H00065, KAKENHI-PROJECT-22K19288, KAKENHI-PROJECT-23K23870, KAKENHI-PROJECT-23K24938, KAKENHI-PROJECT-24K21928
[Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates2020
- Author(s)
  Kawata Kentaro、Wakida Hiroyasu、Yamada Toshimichi、Taniue Kenzui、Han Han、Seki Masahide、Suzuki Yutaka、Akimitsu Nobuyoshi
- Journal Title
  
  Genome Research
  
  Volume: 30 Issue: 10 Pages: 1481-1491
- DOI
  10.1101/gr.264408.120
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-16H06279
[Journal Article] Exploration of <i>Salmonella</i> effector mutant strains on MTR4 and RRP6 degradation2020
- Author(s)
  Sun Xiaoning、Kawata Kentaro、Miki Atsuko、Wada Youichiro、Nagahama Masami、Takaya Akiko、Akimitsu Nobuyoshi
- Journal Title
  
  BioScience Trends
  
  Volume: 14 Issue: 4 Pages: 255-262
- DOI
  10.5582/bst.2020.03085
- NAID
  130007906511
- ISSN
  1881-7815, 1881-7823
- Year and Date
  2020-08-31
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-18K06640, KAKENHI-PROJECT-18K07102, KAKENHI-PROJECT-18H02570
[Journal Article] Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes2020
- Author(s)
  Hoshino Daisuke、Kawata Kentaro、Kunida Katsuyuki、Hatano Atsushi、Yugi Katsuyuki、Wada Takumi、Fujii Masashi、Sano Takanori、Ito Yuki、Furuichi Yasuro、Manabe Yasuko、Suzuki Yutaka、Fujii Nobuharu L.、Soga Tomoyoshi、Kuroda Shinya
- Journal Title
  
  iScience
  
  Volume: 23 Issue: 10 Pages: 101558-101558
- DOI
  10.1016/j.isci.2020.101558
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-19K20382, KAKENHI-PLANNED-17H06300, KAKENHI-PROJECT-17H02159, KAKENHI-ORGANIZER-17H06299, KAKENHI-PLANNED-18H05431, KAKENHI-PROJECT-20H04079, KAKENHI-PROJECT-18K19751
[Journal Article] Stability of RNA sequences derived from the coronavirus genome in human cells2020
- Author(s)
  Wakida Hiroyasu、Kawata Kentaro、Yamaji Yuta、Hattori Emi、Tsuchiya Takaho、Wada Youichiro、Ozaki Haruka、Akimitsu Nobuyoshi
- Journal Title
  
  Biochemical and Biophysical Research Communications
  
  Volume: 527 Issue: 4 Pages: 993-999
- DOI
  10.1016/j.bbrc.2020.05.008
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-19K20394, KAKENHI-PROJECT-20K19915, KAKENHI-PROJECT-19K22679, KAKENHI-PROJECT-19K24361
[Journal Article] Long noncoding RNA U90926 is crucial for herpes simplex virus type 1 proliferation in murine retinal photoreceptor cells2020
- Author(s)
  Shirahama Shintaro、Onoguchi-Mizutani Rena、Kawata Kentaro、Taniue Kenzui、Miki Atsuko、Kato Akihisa、Kawaguchi Yasushi、Tanaka Rie、Kaburaki Toshikatsu、Kawashima Hidetoshi、Urade Yoshihiro、Aihara Makoto、Akimitsu Nobuyoshi
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 19406-19406
- DOI
  10.1038/s41598-020-76450-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K09986, KAKENHI-PROJECT-19K16635, KAKENHI-PROJECT-17H05069, KAKENHI-PUBLICLY-20H04899, KAKENHI-PROJECT-18K09398
[Presentation] 核酸標識法を用いたRNA kineticsのダイナミクス推定2024
- Author(s)
  川田健太郎, 関真秀, 金井昭教, 鈴木穣
- Organizer
  第47回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 一細胞転写計測を用いた遺伝子制御ネットワークの動的特性の解明2024
- Author(s)
  川田健太郎
- Organizer
  先進ゲノム支援拡大班会議
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 核酸標識を用いたRNA動態の時間発達の推定2024
- Author(s)
  川田健太郎
- Organizer
  産業技術総合研究所 KS-BT
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] Inference of temporal development for RNA kinetics using nucleotide labeling2024
- Author(s)
  Kentaro Kawata, Masahide Seki, Akinori Kanai, Yutaka Suzuki
- Organizer
  1st Asia & Pacific Bioinformatics Joint Conference (APBJC2024)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 単一細胞転写計測を用いた遺伝子制御ネットワークの動的特性の解明2023
- Author(s)
  川田健太郎
- Organizer
  2023年度「先進ゲノム支援」拡大班会議
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 一細胞転写計測を用いたRNAカイネティクスの時系列推定2023
- Author(s)
  川田健太郎
- Organizer
  学術変革A 生殖ライフスパン若手会議
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 修飾核酸を利用したRNA kineticsの網羅的計測手法の開発2023
- Author(s)
  川田健太郎
- Organizer
  第46回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] 核酸標識法を用いた一細胞レベルでのRNA kinetics計測法の開発2023
- Author(s)
  川田健太郎
- Organizer
  産総研 LS-BT
- Data Source
  KAKENHI-PROJECT-23K24938
[Presentation] Quantification of RNA-binding Proteins’ effect on target RNA in chronic hypoxia2021
- Author(s)
  Xiaoning Sun, Kentaro Kawata, Yoko Ogura, Nobuhito Goda, Koh Nakayama, Yoichiro Wada and Nobuyoshi Akimitsu
- Organizer
  第10回生命医薬情報学連合大会（IIBMP2021）
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] ベイズ推定を用いた細胞内RNA分解速度の高精度な推定手法の開発2021
- Author(s)
  Kentaro Kawata and Nobuyoshi Akimitsu
- Organizer
  第10回生命医薬情報学連合大会（IIBMP2021）
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] Development of a system for simultaneous measurement of RNA synthesis and degradation rates using modified nucleic acids2020
- Author(s)
  Kentaro Kawata and Nobuyoshi Akimitsu
- Organizer
  第43回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] Development of simultaneous measurement system for transcription and RNA degradation rates using modified nucleic acids2019
- Author(s)
  Kentaro Kawata, Hiroyasu Wakida, Masahide Seki, Yutaka Suzuki, Nobuyoshi Akimitsu
- Organizer
  EMBO|EMBL symposia Multiomics to Mechanisms - Challenges in Data Integration
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] Development of simultaneous measurement system for transcription and RNA degradation rates using modified nucleic acid2019
- Author(s)
  Kentaro Kawata, Hiroyasu Wakida, Yutaka Suzuki, Nobuyoshi Akimitsu
- Organizer
  The 20th International Conference on Systems Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] 修飾核酸を用いた転写およびRNA 分解の同時測定手法の開発2019
- Author(s)
  川田健太郎, 脇田寛泰, 鈴木穣, 秋光信佳
- Organizer
  第19回東京大学生命科学シンポジウム
- Data Source
  KAKENHI-PROJECT-19K16635
[Presentation] 修飾核酸を用いた転写およびRNA分解の同時測定手法の開発2019
- Author(s)
  川田健太郎、脇田寛泰、関真秀、鈴木穣、秋光信佳
- Organizer
  第22回日本RNA学会年会
- Data Source
  KAKENHI-PROJECT-19K16635

1. 松本雅記

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# of Collaborated Products: 1 results
2. 蕪城俊克

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# of Collaborated Products: 1 results
3. 秋光信佳

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# of Collaborated Products: 1 results
4. 田中理恵

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# of Collaborated Products: 1 results

Kawata Kentaro 川田 健太郎

Research Projects

Research Products

Co-Researchers

一細胞NGS解析と深層学習の融合による超並列プロテオミクス解析技術の構築Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

一細胞転写計測を用いた遺伝子制御ネットワークの動的特性の解明Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Elucidation of drug-resistant mechanism in Salmonella infection by construction of gene regulatory networkPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

[Book] Epitranscriptomics（Regulation of RNA Stability Through RNA Modification）2021

Author(s)

Total Pages

Publisher

ISBN

Data Source

[Journal Article] Fragile X messenger ribonucleoprotein 1 (FMRP) regulates glycolytic gene expression under chronic hypoxia in HCT116 cells2025

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Time‐series transcriptomics reveals distinctive mRNA expression dynamics associated with gene ontology specificity and protein expression in skeletal muscle after electrical stimulation‐induced resistance exercise2024

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Exploration of <i>Salmonella</i> effector mutant strains on MTR4 and RRP6 degradation2020

Author(s)

Journal Title

DOI

NAID

ISSN

Year and Date

Language

Data Source

[Journal Article] Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Stability of RNA sequences derived from the coronavirus genome in human cells2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Long noncoding RNA U90926 is crucial for herpes simplex virus type 1 proliferation in murine retinal photoreceptor cells2020

Author(s)

Journal Title

DOI

Data Source

[Presentation] 核酸標識法を用いたRNA kineticsのダイナミクス推定2024

Author(s)

Organizer

Data Source

[Presentation] 一細胞転写計測を用いた遺伝子制御ネットワークの動的特性の解明2024

Author(s)

Organizer

Data Source

[Presentation] 核酸標識を用いたRNA動態の時間発達の推定2024

Author(s)

Organizer

Data Source

[Presentation] Inference of temporal development for RNA kinetics using nucleotide labeling2024

Kawata Kentaro 川田健太郎