Ogura Atsushi 小倉淳

… Alternative Names

OGURA Atsushi 小倉淳

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Researcher Number	60465929
Other IDs	https://orcid.org/0000-0002-5610-9940
Affiliation (Current)	2024: 長浜バイオ大学, バイオサイエンス学部, 教授
Affiliation (based on the past Project Information) *help	2018 – 2023: 長浜バイオ大学, バイオサイエンス学部, 教授 2015 – 2018: 長浜バイオ大学, バイオサイエンス学部, 准教授 2014: 長浜バイオ大学, 公私立大学の部局等, 准教授 2013 – 2014: 長浜バイオ大学, コンピュータバイオサイエンス学科, 准教授 2013: 長浜バイオ大学, バイオサイエンス学部, 准教授 … More 2012: 徳島大学, 学内共同利用施設等, 講師 2012: 徳島大学, 疾患プロテオゲノム研究センター, 講師 2009: お茶の水女子大学, お茶大アカデミックプロダクション, 特任助教 Less
Review Section/Research Field	Principal Investigator Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields / Genetics/Genome dynamics Except Principal Investigator Basic Section 45030:Biodiversity and systematics-related / Biodiversity/Systematics / Environmental impact assessment / Basic Section 60080:Database-related / Complex systems / Forest science / Animal physiology/Animal behavior / Biological Sciences
Keywords	Principal Investigator 進化 / ゾウリムシ / クロレラ / 共生 / 遺伝子伝播 / ゲノム / 遺伝子移行 / 藻類 / 巨大ウイルス / 次世代シーケンス … More / 比較トランスクリプトーム / 眼の多様性 / トランスクリプトーム / 眼 … More Except Principal Investigator ゲノム / 細胞内共生 / 藻類 / 繊毛虫 / ブナ / 進化 / 二次共生 / 原生動物 / クロレラ / 植物化 / トランスクリプトーム / ゲノミクス / 遺伝子発現 / ブナ林 / 環境影響評価 / データベース / ランキング / 単一細胞遺伝子発現データ / グラフ分析 / 遺伝子相関ネットワーク / ランキング変動 / サラマンダーアルジー / 進化・多様性 / Pediludiella daitoensis / Stentor pyriformis / ラッパムシ / ミドリゾウリムシ / 光合成亢進 / 遺伝子発現解析 / 人工知能 / プロテオミクス / 葉緑体リボソーム / 光合成 / プロテオーム / 衰退兆候 / クラスタリング / 細胞マーカー遺伝子 / 細胞系譜 / 単一細胞トランスクリプトーム解析 / 細胞社会モデル / 状態遷移マーカー遺伝子探索 / 炎症モデル構築 / 体細胞変異 / マーカー遺伝子探索 / 細胞系譜再構築 / NGSデータ解析 / 炎症細胞の遷移 / 単一細胞トランスクリプトーム / 盗葉緑体 / ゲノム進化 / 共生 / ズークロレラ / 継続的共生 / 共生藻 / 機能注釈 / リファレンスゲノム / ブナ（Fagus crenata) / ブナ（Fagus crenata） / ゲノムアセンブリ / 次世代シーケンス / DNA-seq / RNA-seq / ドラフトゲノム / 機能ゲノム学 / 環境ゲノミクス / 進化学 / 感覚系 / 化学受容 / 海洋動物 / 脳 / 深海 / 極限環境 / 熱水噴出孔 / 神経系 / 熱水動物 / アノテーション / 表現型 / 疾患情報モデル / 情報生物学 / 脳・神経系 / 疾患情報 Less

藻類共生型原生動物の多様性・生態的意義の探求と進化に関する研究
- Principal Investigator
  
  保科亮
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
時系列ネットワークにおけるランキング変動要因推定と炎症進行分析への応用
- Principal Investigator
  
  浅野泰仁
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 60080:Database-related
- Research Institution
  Toyo University
Whole genome insertion of a giant virus into Chlorella and the mechanism of evolution of symbiosisPrincipal Investigator
- Principal Investigator
  
  Ogura Atsushi
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 45:Biology at organismal to population levels and anthropology, and related fields
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Elucidation of endosymbiosis in algae and protozoa
- Principal Investigator
  
  Hoshina Ryo
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Study of Information analysis and modelinig
- Principal Investigator
  
  IKEO KAZUHO
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  National Institute of Genetics
Genemic assessment of symptom on beech forest decline
- Principal Investigator
  
  Saito Hideyuki
- Project Period (FY)
  2017 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Environmental impact assessment
- Research Institution
  Hokkaido University
Study on the diversity and evolution of symbiotic protozoa which contain much number of algal cells
- Principal Investigator
  
  Hoshina Ryo
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Environmental impact assessments by genome-wide gene expression profile in Siebold's beech forests
- Principal Investigator
  
  Saito Hideyuki
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Environmental impact assessment
- Research Institution
  Hokkaido University
Generation of Siebold's beech draft genome toward an improvement of functional genomics of trees in Fagales
- Principal Investigator
  
  SAITO Hideyuki
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Forest science
- Research Institution
  Hokkaido University
Studies on the diversity of the endosymbiotic algae in ciliates
- Principal Investigator
  
  HOSHINA Ryo
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Biodiversity/Systematics
- Research Institution
  Nagahama Institute of Bio-Science and Technology
Evolutionary sensory biology of deep-sea animals adapted into extreme environments.
- Principal Investigator
  
  SHIGENO Shuichi
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Animal physiology/Animal behavior
- Research Institution
  Japan Agency for Marine-Earth Science and Technology
Evolution of gene regulatory network for eye diversificationPrincipal Investigator
- Principal Investigator
  
  OGURA Atsushi
- Project Period (FY)
  2012 – 2013
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  Nagahama Institute of Bio-Science and Technology
  The University of Tokushima
An informatics approach to the systematic understanding of a model disease
- Principal Investigator
  
  GOJOBORI Takashi
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics

[Book] Metatranscriptome"Genome Analysis : Current Procedures and Applications2014
- Author(s)
  Ogura A
- Publisher
  Horizon press (ISBN : 978-1-908230-29-4)
- Data Source
  KAKENHI-PROJECT-24770002
[Book] Genome Analysis: Current Procedures and Applications2014
- Author(s)
  Ogura A
- Total Pages
  374
- Publisher
  Horizon press
- Data Source
  KAKENHI-PROJECT-24770002
[Book] 頭足類の比較ゲノムプラットフォームの展望2013
- Author(s)
  小倉淳
- Total Pages
  7
- Publisher
  比較生理生化学会
- Data Source
  KAKENHI-PROJECT-24770002
[Book] 頭足類の比較ゲノムプラットフォームの展望, 比較生理生化学会誌2013
- Author(s)
  小倉淳
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Single-Cell Transcriptome Profiling of Pancreatic Islets From Early Diabetic Mice Identifies Anxa10 for Ca2+ Allostasis Toward β-Cell Failure2023
- Author(s)
  Motomura K, Matsuzaka T, Shichino S, Ogawa T, Pan H, Nakajima T, Asano Y, Okayama T, Takeuchi T, Ohno H, Han SI, Miyamoto T, Takeuchi Y, Sekiya M, Sone H, Yahagi N, Nakagawa Y, Oda T, Ueha S, Ikeo K, Ogura A, Matsushima K, Shimano H.
- Journal Title
  
  Diabetes
  
  Volume: 73 Issue: 1 Pages: 75-92
- DOI
  10.2337/db23-0212
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K18444, KAKENHI-PROJECT-22K12043, KAKENHI-PROJECT-22K17769, KAKENHI-PLANNED-22H05064, KAKENHI-PROJECT-22H00474, KAKENHI-PROJECT-21H03371, KAKENHI-PROJECT-23K23562
[Journal Article] Current trends in RNA virus detection through metatranscriptome sequencing data2023
- Author(s)
  Nakagawa So、Sakaguchi Shoichi、Ogura Atsushi、Mineta Katsuhiko、Endo Toshinori、Suzuki Yoshiyuki、Gojobori Takashi
- Journal Title
  
  FEBS Open Bio
  
  Volume: accepted Issue: 6 Pages: 992-1000
- DOI
  10.1002/2211-5463.13626
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21452, KAKENHI-PROJECT-22K14999
[Journal Article] A novel ND1 mitochondrial DNA mutation is maternally inherited in growth hormone transgenesis in amago salmon (Oncorhynchus masou ishikawae)2022
- Author(s)
  Tomohiko Sato, Naoko Goto-Inoue, Masaya Kimishima, Jike Toyoharu, Ryuhei Minei, Atsushi Ogura, Hiroyuki Nagoya, Tsukasa Mori
- Journal Title
  
  Scientific Report
  
  Volume: 12 Issue: 1 Pages: 1-14
- DOI
  10.1038/s41598-022-10521-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H03864, KAKENHI-PROJECT-20K21452
[Journal Article] Genomics and effective trait candidates of edible insects2022
- Author(s)
  Nakajima Yuichi、Ogura Atsushi
- Journal Title
  
  Food Bioscience
  
  Volume: 48 Pages: 101793-101793
- DOI
  10.1016/j.fbio.2022.101793
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21452
[Journal Article] The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus2022
- Author(s)
  Khedkar Gulab、Kambayashi Chiaki、Tabata Hiromasa、Takemura Ikuyo、Minei Ryuhei、Ogura Atsushi、Kurabayashi Atsushi
- Journal Title
  
  Scientific Data
  
  Volume: 9 Issue: 1 Pages: 1-7
- DOI
  10.1038/s41597-022-01530-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20J22729, KAKENHI-PROJECT-20K21452, KAKENHI-PROJECT-18H02497
[Journal Article] Whole-genome resequencing of large yellow croaker (Larimichthys crocea) reveals the population structure and signatures of environmental adaptation2021
- Author(s)
  Kon Tetsuo、Pei Liyi、Ichikawa Ryota、Chen Chunyan、Wang Ping、Takemura Ikuyo、Ye Yingying、Yan Xiaojun、Guo Baoying、Li Weiye、Lauden Hagai Nsobi、Tabata Hiromasa、Pan Hao、Omori Yoshihiro、Ogura Atsushi、Jiang Lihua
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 11235-11235
- DOI
  10.1038/s41598-021-90645-1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03420, KAKENHI-PROJECT-20K21452
[Journal Article] Whole-genome sequencing of endangered Zhoushan cattle suggests its origin and the association of MC1R with black coat colour2021
- Author(s)
  Jiang Lihua、Kon Tetsuo、Chen Chunyan、Ichikawa Ryota、Zheng Qiyuan、Pei Liyi、Takemura Ikuyo、Nsobi Lauden Hagai、Tabata Hiromasa、Pan Hao、Omori Yoshihiro、Ogura Atsushi
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 17359-17359
- DOI
  10.1038/s41598-021-96896-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03420, KAKENHI-PROJECT-20K21452
[Journal Article] Enrichment of Uncommon Bacteria in Soil by Fractionation Using a Metal Mesh Device2021
- Author(s)
  KAMBA Seiji、OGURA Atsushi、MIURA Yoshiko、HASEGAWA Makoto
- Journal Title
  
  Anal. Sci.
  
  Volume: 37 Issue: 9 Pages: 1295-1300
- DOI
  10.2116/analsci.21P042
- NAID
  130008087322
- ISSN
  0910-6340, 1348-2246
- Year and Date
  2021-09-10
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K05739, KAKENHI-PROJECT-20K21452
[Journal Article] Time-Series Analysis of Gene Correlation Networks based on Single-Cell Transcriptome Data2021
- Author(s)
  Asano Yasuhito、Ogawa Tatsuro、Shichino Shigeyuki、Ueha Satoshi、Matsushima Koji、Ogura Atsushi
- Journal Title
  
  2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  
  Volume: - Pages: 2134-2141
- DOI
  10.1109/bibm52615.2021.9669412
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-17H06391, KAKENHI-PROJECT-20K21452
[Journal Article] A novel circular ssDNA virus of the phylum Cressdnaviricota discovered in metagenomic data from otter clams (Lutraria rhynchaena)2020
- Author(s)
  Kim Oanh T. P.、Kagaya Yuki、Tran Hoang S.、Minei Ryuhei、Tran Trang T. H.、Duong Ha T. T.、Le Binh T. N.、Dang Lua T.、Kinoshita Kengo、Ogura Atsushi、Yura Kei
- Journal Title
  
  Archives of Virology
  
  Volume: 165 Issue: 12 Pages: 2921-2926
- DOI
  10.1007/s00705-020-04819-9
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21452, KAKENHI-PROJECT-19J15617
[Journal Article] Molecular Characterization and Evolution Analysis of Two Forms of TLR5 and TLR13 Genes Base on Larimichthys crocea Genome Data2020
- Author(s)
  Jiang Lihua、Pei Liyi、Wang Ping、Liu Liqin、Li Gong、Liu Binjian、L Zhenming、Hiromasa Tabata、Pan Hao、Ogura Atsushi
- Journal Title
  
  International Journal of Genomics
  
  Volume: 2020 Pages: 1-17
- DOI
  10.1155/2020/4895037
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21452
[Journal Article] Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans2020
- Author(s)
  Yoshida Masa-aki、Imoto Junichi、Kawai Yuri、Funahashi Satomi、Minei Ryuhei、Akizuki Yuki、Ogura Atsushi、Nakabayashi Kazuhiko、Yura Kei、Ikeo Kazuho
- Journal Title
  
  Marine Biotechnology
  
  Volume: 22 Issue: 6 Pages: 760-771
- DOI
  10.1007/s10126-020-10001-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21452, KAKENHI-PROJECT-19H03200, KAKENHI-PROJECT-19J15617
[Journal Article] Diversity of Light Sensing Molecules and Their Expression During the Embryogenesis of the Cuttlefish (Sepia officinalis)2020
- Author(s)
  Bonad Morgane、Ogura Atsushi、Corre Erwan、Bassaglia Yann、Bonnaud-Ponticelli Laure
- Journal Title
  
  Frontiers in Physiology
  
  Volume: 11
- DOI
  10.3389/fphys.2020.521989
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21452
[Journal Article] The increased frequency of methicillin-resistant Staphylococcus aureus with low MIC of beta-lactam antibiotics isolated from hospitalized patients2020
- Author(s)
  Iwata Y、Sakai N、Yoneda I、Satou K、Furuichi K、Senda Y、Sakai-Takemori Y、Wada T、Fujita S、Ogura H、Sato K、Minami T、Yamaguchi K、Kitajima S、Toyama T、Yamamura Y、Miyagawa T、Hara A、Shimizu M、Sakai Y、Ikeo K、Shichino S、Ueha S、Nakajima T、Matsushima K、Wada T
- Journal Title
  
  Journal of Infection and Chemotherapy
  
  Volume: 26 Issue: 6 Pages: 604-610
- DOI
  10.1016/j.jiac.2020.01.016
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06392, KAKENHI-PLANNED-17H06399, KAKENHI-ORGANIZER-17H06391, KAKENHI-PLANNED-17H06394, KAKENHI-PROJECT-20K08605
[Journal Article] Specific features of fibrotic lung fibroblasts highly sensitive to fibrotic processes mediated via TGF-β-ERK5 interaction.2019
- Author(s)
  Kadoya K, Togo S, Tulafu M, Namba Y, Iwai M, Watanabe J, Okabe T, Jin J, Kodama Y, Kitamura H, Ogura T, Kitamura N, Ikeo K, Takeda T, Kondo N, Takahashi K.
- Journal Title
  
  Cell Physiol Biochem
  
  Volume: 52 Issue: 4 Pages: 822-837
- DOI
  10.33594/000000057
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K10653, KAKENHI-PLANNED-17H06399
[Journal Article] De novo assembly of middle-sized genome using MinION and Illumina sequencers2018
- Author(s)
  Minei Ryuhei、Hoshina Ryo、Ogura Atsushi
- Journal Title
  
  BMC Genomics
  
  Volume: 19 Issue: 1
- DOI
  10.1186/s12864-018-5067-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07491
[Journal Article] Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants2014
- Author(s)
  Yoshida M., Yura K., Ogura A.
- Journal Title
  
  Scientific Reports
  
  Volume: 4 Pages: 4256-4256
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Sensing deep extreme environments: the receptor cell types, brain centers, and multi-layer neural packaging of hydrothermal vent endemic worms2014
- Author(s)
  Shigeno S., Ogura A., Mori T., Toyohara H., Yoshida T., Tsuchida S., Fujikura K.
- Journal Title
  
  Frontiers in Zoology
  
  Volume: 11:82 Issue: 1
- DOI
  10.1186/s12983-014-0082-9
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24657058
[Journal Article] The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda : Decapodiformes): the first representative from the family Idiosepiidae2014
- Author(s)
  Hall NE., Hanzak J., Allcock AL., Cooke IR., Ogura A., Strugnell JM.
- Journal Title
  
  Mitochondrial DNA
  
  Pages: 1940-1736
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants2014
- Author(s)
  Yoshida MA, Yura K, Ogura A.
- Journal Title
  
  Scientific Reports
  
  Volume: 4 Issue: 1 Pages: 4256-4256
- DOI
  10.1038/srep04256
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J05107, KAKENHI-PROJECT-24770002
[Journal Article] Integrative omics analysis reveals differentially dist ibuted proteins in dimorphic euspermatozoa of the squid, Loligo bleekeri2014
- Author(s)
  Yoshida M., Yamada L , Ochi H., Iwata Y., Tamura-Nakano M., Sawada H., Sauer W.H.H., Ogura A., Hirohashi N.
- Journal Title
  
  BBRC
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus2013
- Author(s)
  Ogura A, et al.
- Journal Title
  
  Scientific Reports
  
  Volume: 3 Issue: 1 Pages: 1432-1432
- DOI
  10.1038/srep01432
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J05107, KAKENHI-PROJECT-24770002
[Journal Article] Transcriptome analysis of Nautilus and pygmy squid developing eye provides insights in lens and eye evolution2013
- Author(s)
  Sousounis K, Ogura A., Tsonis PA
- Journal Title
  
  PLoS ONE
  
  Volume: 8(10)
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae2013
- Author(s)
  Hall NE., Hanzak J., Allcock AL., Cooke IR., Ogura A., *Strugnell JM.
- Journal Title
  
  Mitochondrial DNA
  
  Volume: 1940 Issue: 1 Pages: 1736-1736
- DOI
  10.3109/19401736.2013.865180
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus2013
- Author(s)
  Ogura A., Yoshida M., Moritaki T., Okuda Y., Sese J., Shimizu KK., Sousounis K., Tsonis PA.
- Journal Title
  
  Scientific Reports
  
  Volume: 3 Pages: 1432-1432
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Transcriptome analysis of Nautilus and pygmy squid developing eye provides insights in lens and eye evolution2013
- Author(s)
  Sousounis K, *Ogura A., *Tsonis PA.
- Journal Title
  
  PLoS One
  
  Volume: 8(10) Issue: 10 Pages: e78054-e78054
- DOI
  10.1371/journal.pone.0078054
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Comparison of Gene Expression Profile of Epiretinal Membranes Obtained from Eyes with Proliferative Vitreoretinopathy to That of Secondary Epiretinal Membranes2013
- Author(s)
  Asato R., Yoshida S., Ogura A., Nakama T., Ishikawa K., Nakao S., Sassa Y., Enaida H., Oshima Y., Ikeo K., Gojobori T., Kono T., Ishibashi T.
- Journal Title
  
  PLoS ONE
  
  Volume: 8(1)
- NAID
  120005227330
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Systematic Measurement of Missmatch Effect for Designing Inter-Species Microarray2012
- Author(s)
  Fukuzaki M., Yoshida M., Ogura A., Sese J.
- Journal Title
  
  BIBM 2012
  
  Pages: 478-481
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Cephalopod Genomics : A Plan of Strategies and Organization2012
- Author(s)
  Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Cristo CD, Dilkes BP, Edsinger-Gonzales E, Freeman RJ, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, Nödl MT, Nyholm SV, Ogura A., Pungor JR, Rosenthal JJC, Schwarz EM, Shigeno S, Strugnell JM, Wollesen T, Zhang G, Ragsdale CW
- Journal Title
  
  Stand. Genomic Sci.
  
  Volume: 7
- Data Source
  KAKENHI-PROJECT-24770002
[Journal Article] Expression Profile of Fibrovascular Membranes from Patients with Proliferative Diabetic Retinopathy.2010
- Author(s)
  Yoshida, S., Ogura, A., Ishikawa, K., Yoshida, A., Kohno, R., Yamaji, Y., Ikeo, K., Gojobori, T., Kono, T., Ishibashi, T. Gene
- Journal Title
  
  Br J Ophthalmol (In press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019065
[Journal Article] Molecular characterization of the developmental gene in eyes: Through data-mining on integrated transcriptome databases.2006
- Author(s)
  Choy KW, Wang CC, Ogura A, Lau TK, Rogers MS, Ikeo K, Gojobori T. Tang, LY., Lam, DS., Chung, TK. Pang, CP.
- Journal Title
  
  Clin. Biochem. 39(3)
  
  Pages: 224-230
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019065
[Journal Article] Genomic annotation of 15, 809 ESTs identified from pooled early gestation human eyes.2006
- Author(s)
  Choy KW, Wang CC, Ogura A, Lau TK, Rogers MS, Ikeo K, Gojobori T. Lam, DS., Pang, CP.
- Journal Title
  
  Phys 25(1)
  
  Pages: 9-15
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17019065
[Journal Article] Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution.2005
- Author(s)
  A.Ogura
- Journal Title
  
  Gene 345・1
  
  Pages: 65-71
- Data Source
  KAKENHI-PROJECT-17019065
[Presentation] 1 細胞単位の遺伝子発現の時系列データに対する遺伝子の疾患の進行による関係性の変化の抽出2024
- Author(s)
  増田智也、浅野泰仁、小川達郎、七野成之、上羽悟史、松島綱治、小倉淳
- Organizer
  第16回データ工学と情報マネジメントに関するフォーラム(DEIM 2024)
- Data Source
  KAKENHI-PROJECT-22K12043
[Presentation] 共生できなくなった偏性共生クロレラChlorella variabilis変異株のオミクスアプローチによる共生メカニズム解明2019
- Author(s)
  嶺井隆平, 保科亮, 藍川晋平, 洲崎敏伸, 小倉淳
- Organizer
  日本藻類学会第43回大会
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] 非共生クロレラから発見された共生クロレラ特異的巨大ウイルス全ゲノム挿入2018
- Author(s)
  村瀬佳乃, 嶺井隆平, 保科亮, 小倉淳
- Organizer
  日本共生生物学会第2回大会
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] ブナの健全性指標におけるリボソームRNAの可能性2018
- Author(s)
  斎藤秀之・神村章子・樋口亮・小倉淳
- Organizer
  第67回北方森林学会
- Data Source
  KAKENHI-PROJECT-17H01884
[Presentation] ミドリゾウリムシ共生クロレラのゲノム・トランスクリプトーム解析から明らかになった細胞内二次共生初期におけるゲノムの変化2018
- Author(s)
  嶺井隆平, 保科亮, 洲崎敏伸, 小倉淳
- Organizer
  日本共生生物学会第2回大会
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] ミドリゾウリムシ共生クロレラのゲノム・トランスクリプトーム解析から明らかになった大規模な遺伝子増加と共生の関連性2018
- Author(s)
  嶺井隆平, 保科亮, 洲崎敏伸, 小倉淳
- Organizer
  日本原生生物学会第51回大会
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] 遺伝子発現プロファイルに基づくブナ林の衰退兆候の検出2018
- Author(s)
  斎藤秀之・神村章子・小林壱德久・山口高志・和田尚之・樋口亮・小倉淳・瀬々潤
- Organizer
  第129回日本森林学会
- Data Source
  KAKENHI-PROJECT-17H01884
[Presentation] ブナのドラフトゲノム2017
- Author(s)
  斎藤秀之・小林壱德久・神村章子・小倉淳・瀬々潤
- Organizer
  第66回北方森林学会
- Data Source
  KAKENHI-PROJECT-17H01884
[Presentation] 遺伝子ネットワーク解析によるブナ衰退現象の因果推論2017
- Author(s)
  斎藤秀之・小林壱德久・和田尚之・小倉淳・瀬々潤
- Organizer
  日本森林学会
- Place of Presentation
  鹿児島大学（鹿児島市）
- Year and Date
  2017-03-26
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] クロレラ共生種・自由生活種、そして巨大ウイルスウイルスのゲノム比較から迫るゲノム共進化とウイルス抵抗性2017
- Author(s)
  嶺井隆平, 秋月祐輝, 植田侑希, 保科亮, 小倉淳
- Organizer
  NGS現場の会第5回研究会仙台
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] ブナ過熟木の葉における遺伝子発現プロファイル2017
- Author(s)
  樋口亮・斎藤秀之・和田尚之・小倉淳・瀬々潤・渋谷正人・小池孝良
- Organizer
  第66回北方森林学会
- Data Source
  KAKENHI-PROJECT-17H01884
[Presentation] De novo endosymbiotic green algae genome assembly Nanopore MinION2017
- Author(s)
  Ryuhei Minei, Ryo Hoshina, Atsushi Ogura
- Organizer
  The International Conference on Genome Science: from Basic Research to Applications, HanoiThe International Conference on Genome Science: from Basic Research to Applications, Hanoi
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] Genomic changes of symbiont for the multi-algae retaining protists2017
- Author(s)
  Atsushi Ogura, Yuki Akizuki, Ryuhei Minei, Ryo Hoshina
- Organizer
  VI Euro Evo Devo, Uppsala, Sweden
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] クロレラゲノムに挿入された巨大ウイルスPBCV-1の化石ゲノムの考察2017
- Author(s)
  村瀬佳乃, 福本龍馬, 嶺井隆平, 保科亮, 小倉淳
- Organizer
  日本分子生物学会第40回大会神戸
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] Nanopore MiniONで共生クロレラのゲノムを決めてみました！ ―サンガーシーケンサーで決定されたゲノムにMiniONは勝てるのか？2017
- Author(s)
  嶺井隆平, 保科亮, 小倉淳
- Organizer
  生命情報科学若手の会第9回大会蒲郡
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] Evolutionary genomics change of symbiont in relation to giant virus2017
- Author(s)
  Ryo Hoshina, Ryuhei Minei, Atsushi Ogura
- Organizer
  The International Conference on Genome Science: from Basic Research to Applications, Hanoi
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] ロングリードNGS MinIONを用いた中型ゲノムパイプラインの構築 ~共生藻類Chlorella variabilisのゲノム決定をとおして~2017
- Author(s)
  嶺井隆平, 保科亮, 小倉淳
- Organizer
  日本分子生物学会第40回大会神戸
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] ゲノム網羅的な発現遺伝子を用いたブナ林の環境影響評価－トランスクリプトーム解析とプロテオーム解析による衰退指標の探索－2016
- Author(s)
  斎藤秀之・神村章子・小林壱徳久・高須賀太一・堀千明・杉村逸郎・和田尚之・山田宰靖・瀬々潤・小倉淳・清水健太郎・齋藤央嗣・谷脇徹・相原敬次
- Organizer
  山地森林域の生物・環境モニタリング第10回ワークショップ
- Place of Presentation
  新潟市万代市民文化会館（新潟県新潟市）
- Year and Date
  2016-03-13
- Invited
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] RNA-seqに基づくブナ衰退木の葉の発現変動遺伝子解析2016
- Author(s)
  小林壱德久・斎藤秀之・齋藤央嗣・谷脇徹・相原敬次・小倉淳・瀬々潤・渋谷正人・小池孝良
- Organizer
  北方森林学会
- Place of Presentation
  札幌コンベンションセンター (札幌市）
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] クロレラ共生種・自由生活種、そして巨大ウイルスウイルスのゲノム比較から迫るゲノム共進化とウイルス抵抗性獲得機構2016
- Author(s)
  嶺井隆平, 秋月祐輝, 植田侑希, 保科亮, 小倉淳
- Organizer
  日本分子生物学会第39回大会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] 発現遺伝子のオミックス解析によるブナ成木の衰退度の評価法～トランスクリプトーム VS.プロテオーム～2016
- Author(s)
  斎藤秀之・高須賀太一・堀千明・神村章子・小林壱徳久・和田尚之・齋藤央嗣・谷脇徹・相原敬次・小倉淳・瀬々潤
- Organizer
  北方森林学会
- Place of Presentation
  札幌コンベンションセンター (札幌市）
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] Genomic changes of symbiont for the multi-algae retaining protists2016
- Author(s)
  Atsushi Ogura, Yuki Akizuki, Ryuhei Minei, Ryo Hoshina
- Organizer
  VI Euro Evo Devo,
- Place of Presentation
  Uppsala, Sweden
- Year and Date
  2016-07-26
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07491
[Presentation] クロレラ共生種・自由生活種のゲノム比較から迫る共生初期メカニズムの解明2015
- Author(s)
  秋月祐輝, 保科亮, 寺林靖宣, 吉良聡, 佐藤昭之, 北川正成, 小倉淳
- Organizer
  日本分子生物学会第38回大会/日本生化学会第88回大会
- Place of Presentation
  神戸
- Year and Date
  2015-12-01
- Data Source
  KAKENHI-PROJECT-25840141
[Presentation] 熱水噴出域の極限環境適応種から探る化学センシングとその分子基盤2015
- Author(s)
  荻野哲也, 前川真吾, 滋野修一, 藤倉克則, 小倉淳, 豊原治彦
- Organizer
  アクアゲノムシンポジウム
- Place of Presentation
  東京海洋大学、東京都港区
- Year and Date
  2015-05-31
- Data Source
  KAKENHI-PROJECT-24657058
[Presentation] 熱水噴出孔適応動物から探る新規バイオセンサー2015
- Author(s)
  荻野哲也, 滋野修一, 前川真吾, 西村大希, 小倉淳, 藤倉克則, 豊原治彦
- Organizer
  第17回マリンバイオテクノロジー学会大会
- Place of Presentation
  東京海洋大学、東京都港区
- Year and Date
  2015-05-30
- Data Source
  KAKENHI-PROJECT-24657058
[Presentation] 比較ゲノム・トランスクリプトーム研究から迫る眼多様化メカニズム2014
- Author(s)
  小倉淳
- Organizer
  遺伝研研究集会-ゲノム編集時代の分子進化
- Place of Presentation
  国立遺伝学研究所
- Year and Date
  2014-06-28
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] The unusual brains in deep-sea hydrothermal vent environment: the neural tracts and multi-layer cellular packaging of the alvinellid worms2014
- Author(s)
  Shigeno S., Ogura A., Yoshida M., Mori T., Toyohara H., Yoshida T., Tsuchida S., Fujikura K.
- Organizer
  International Congress of Neuroethology/JSCPB
- Place of Presentation
  札幌コンベンションセンター、北海道札幌市
- Year and Date
  2014-07-31
- Data Source
  KAKENHI-PROJECT-24657058
[Presentation] 次世代シーケンス解析に基づく生物の多様性と進化メカニズムの研究2014
- Author(s)
  小倉淳
- Place of Presentation
  北海道大学
- Year and Date
  2014-03-31
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Evolutionary Genomics of Cephalopods2014
- Author(s)
  Ogura A
- Organizer
  PAG XXII
- Place of Presentation
  Sad Diego, USA
- Year and Date
  2014-01-17
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] 遺伝子の発現解析は林木のストレス診断に有効か？－ブナ林の事例から－2014
- Author(s)
  斎藤秀之・瀬々潤・小倉淳・齋藤央嗣・谷脇徹・中村佐知子・村中康秀・山口高志・野口泉
- Organizer
  北方森林学会
- Place of Presentation
  札幌コンベンションセンター（札幌市）
- Year and Date
  2014-11-12
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] Novel role of PERK-regulated non-coding RNAs in the unfolded protein response revealed by comprehensive gene expression analysis2013
- Author(s)
  Ogura A
- Organizer
  The 24th CDB meeting
- Place of Presentation
  Kobe, Japan
- Year and Date
  2013-06-13
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Genomes of Cephalopods2012
- Author(s)
  Ogura A
- Organizer
  NESCent meeting "Path to CephalopodGenomics"
- Place of Presentation
  Durham, USA
- Year and Date
  2012-05-22
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Comparative Transcriptomics for Eye Diversification of Cephalopod : Evolution of Camera eye and Pinhole eye2012
- Author(s)
  Ogura A
- Organizer
  Society for Molecular Biology and Evolution 2012
- Place of Presentation
  Ireland, Dublin
- Year and Date
  2012-06-12
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] オウムガイおよびイカ胚の比較RNAseqに見る頭足類カメラ眼の進化メカニズム2012
- Author(s)
  吉田真明, 小倉淳
- Organizer
  NGS現場の会
- Place of Presentation
  神戸
- Year and Date
  2012-05-24
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Sensing extreme environment: the diverse chemical receptors identified by comprehensive RNAseq analysis of hydrothermal vent endemic animals
- Author(s)
  Shigeno S., Ogura A., Tsuchida S., Fujikura K.
- Organizer
  5th International Symposium on Chemosynthesis-Based Ecosystems
- Place of Presentation
  Victoria conference center, Victoria, Canada
- Data Source
  KAKENHI-PROJECT-24657058
[Presentation] Evolutionary Genomics of Cephalopods
- Author(s)
  Ogura A.
- Organizer
  PAG XXII
- Place of Presentation
  San Diego
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] 酸性および酸化性ストレスがブナの葉の遺伝子発現パターンに与える影響
- Author(s)
  斎藤秀之・神村章子・瀬々潤・小倉淳
- Organizer
  日本森林学会
- Place of Presentation
  北海道大学農学部（札幌市）
- Year and Date
  2015-03-27 – 2015-03-30
- Data Source
  KAKENHI-PROJECT-26281030
[Presentation] Cyclops phenocopy in squids indicates common and diverged mechanisms of eye field determination
- Author(s)
  Yoshida M., Gojobori T.,Ogura A.
- Organizer
  Euro Evo Devo
- Place of Presentation
  Risbon University (Portugal)
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Genomes of Cephalopods
- Author(s)
  Ogura A.
- Organizer
  NESCent meeting
- Place of Presentation
  Duke University (USA)
- Invited
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] Comparative Transcriptomics for Eye Diversification of Cephalopod: Evolution of Camera eye and Pinhole eye
- Author(s)
  Ogura A.
- Organizer
  SMBE
- Place of Presentation
  Dublin Convention Centre (Ireland)
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] 次世代シーケンス解析に基づく生物の多様性と進化メカニズムの研究
- Author(s)
  小倉淳
- Organizer
  非モデル生物のための次世代シーケンサー活用術
- Place of Presentation
  札幌
- Invited
- Data Source
  KAKENHI-PROJECT-24770002
[Presentation] ゲノム網羅的な発現遺伝子を用いたブナ林の環境影響評価法－丹沢ブナ林の事例－
- Author(s)
  斎藤秀之・神村章子・山田宰靖・瀬々潤・小倉淳・清水(稲継)理恵・清水健太郎・齋藤央嗣・谷脇徹
- Organizer
  山地森林域の生物・環境モニタリング第9回ワークショップ
- Place of Presentation
  神奈川大学KUポートスクエア（横浜市）
- Year and Date
  2015-03-10 – 2015-03-11
- Invited
- Data Source
  KAKENHI-PROJECT-26281030

1. HOSHINA Ryo (40373089)

# of Collaborated Projects: 5 results

# of Collaborated Products: 15 results
2. Saito Hideyuki (70312395)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. IKEO Kazuho (20249949)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
4. SESE Jun (40361539)

# of Collaborated Projects: 2 results

# of Collaborated Products: 7 results
5. KUSUOKA Yasushi (80359265)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. SUZAKI Toshinobu (00187692)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
7. GOJOBORI Takashi (50162136)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
8. SUZUKI Yoshiyuki (70353430)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. ENDO Toshinori (00323692)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. MINETA Katsuhiko (40374615)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. SHIGENO Shuichi (90360560)

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
12. KANZAKI Ryohei (40221907)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 菅原秀明 (80231372)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 山口高志 (90462316)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
15. 渡邉日出海 (30322754)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 太田聡史 (30391890)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 高須賀太一 (70748409)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 浅野泰仁 (20361157)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
19. NOGUCHI Izumi

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
20. SAITO Hiroshi

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
21. TANIWAKI Tohru

# of Collaborated Projects: 1 results

# of Collaborated Products: 5 results
22. YAGO Hiroaki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. MURANAKA Yasuhide

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
24. SUDA Kouichi

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. OMORI Yoshihiro

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
26. INOUE Naoko

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
27. UEHA Satoshi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
28. 斎藤秀之

# of Collaborated Projects: 0 results

# of Collaborated Products: 11 results
29. 森司

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
30. 十合晋作

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
31. 松坂賢

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
32. 松島綱治

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
33. 七野成之

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Ogura Atsushi 小倉 淳

OGURA Atsushi 小倉 淳

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Whole genome insertion of a giant virus into Chlorella and the mechanism of evolution of symbiosisPrincipal Investigator

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Evolution of gene regulatory network for eye diversificationPrincipal Investigator

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[Book] Metatranscriptome"Genome Analysis : Current Procedures and Applications2014

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[Book] Genome Analysis: Current Procedures and Applications2014

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Ogura Atsushi 小倉淳

OGURA Atsushi 小倉淳