• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

NAKATO RYUICHIRO  中戸 隆一郎

… Alternative Names

NAKATO Ryuichiro  中戸 隆一郎

Less
Researcher Number 60583044
Other IDs
  • ORCIDhttps://orcid.org/0000-0003-3019-5817
Affiliation (Current) 2025: 東京大学, 定量生命科学研究所, 准教授
Affiliation (based on the past Project Information) *help 2021 – 2024: 東京大学, 定量生命科学研究所, 准教授
2019 – 2021: 東京大学, 定量生命科学研究所, 講師
2018: 東京大学, 定量生命科学研究所, 助教
2011 – 2017: 東京大学, 分子細胞生物学研究所, 助教
Review Section/Research Field
Principal Investigator
Basic Section 43060:System genome science-related / Complex systems / System genome science / System genome science
Except Principal Investigator
Basic Section 46010:Neuroscience-general-related / Genome biology / Biological Sciences / Basic Section 48040:Medical biochemistry-related / Basic Section 50010:Tumor biology-related / Medium-sized Section 43:Biology at molecular to cellular levels, and related fields … More / Broad Section G / Medium-sized Section 56:Surgery related to the biological and sensory functions and related fields / Biomedical structure and function and related fields / Genome biology Less
Keywords
Principal Investigator
バイオインフォマティクス / シングルセル解析 / エピゲノム / 大規模解析 / ChIP-seq法 / 疾患解析 / コヒーシン / 細胞運命解析 / 細胞運命制御 / 細胞分化 … More / 数理モデリング / 情報基盤整備 / Data imputation / 生命情報学 / 疑似時系列解析 / 遺伝子ネットワーク / 1細胞解析 / 解析パイプライン / 軌道解析 / データ駆動型解析 / 次世代シーケンサー / 立体構造解析 / IHECプロジェクト / ノイズ除去 / Spike-in解析 / ゲノム立体構造 / 品質評価 / Hi-C法 / 3C / ChIP-seq / ゲノム機能解析 / クロマチン構造解析 / 転写解析 / データ可視化 / ChIP-seq 法 / ゲノム情報学 … More
Except Principal Investigator
コヒーシン / 転写制御 / クロマチン / ゲノム / 転写伸長反応 / 染色体高次構造 / コルネリア・デ・ランゲ症候群 / 抑制性ニューロン / コヒーシンローダー / MCMヘリカーゼ / DNA複製 / Esco / アセチル化 / ChIP-seq / コンソーシアム研究 / デジタル情報 / ゲノム・オミックス解析 / 循環器疾患 / 国際連携 / HOX遺伝子 / 急性白血病 / ヌクレオポリン融合遺伝子 / ゲノム高次構造 / 相分離 / 白血病 / 融合遺伝子 / 転移がん / PDX / Drug tolerant persisters / がん幹細胞 / トリプルネガティブ乳がん / 精神疾患 / クロマチン制御 / 神経発達 / コヒーシン病 / 転写構造 / 染色体 / prefab / ATPase / in vitro転写系 / ヒストン密度 / リモデリング複合体 / エンハンソソーム / 染色体動態 / 神経可塑性 / クロマチン高次構造 / パルブアルブミン陽性(PV)細胞 / 神経回路可塑性 / 臨界期 / ATAC-seq / PV細胞 / 脳発達 / 幹細胞 / エピゲノム / シェアストレス / くも膜 / トランスクリプトーム / エピゲノム科学 / ゲノム科学 / 血管生物学 / 脳神経外科学 / 血管内皮細胞 / エピゲノム解析 / くも膜下出血 / コヒージョン / メディエーター / ループ構造 / 転写調節 / 転写伸長 / 転写 / アセチル化酵素 / ゲノム構造 / 姉妹染色体 / Mcmヘリカーゼ / 姉妹染色分体間接着 / 発現制御 Less
  • Research Projects

    (16 results)
  • Research Products

    (89 results)
  • Co-Researchers

    (37 People)
  •  Single-cell level integrated elucidation of genomic gene mutation heterogeneity and stem cell hierarchy in breast cancer primary and metastasis

    • Principal Investigator
      後藤 典子
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 50010:Tumor biology-related
    • Research Institution
      Kanazawa University
  •  International Cardiovascular Digital Omics Consortium

    • Principal Investigator
      小室 一成
    • Project Period (FY)
      2024 – 2030
    • Research Category
      Fund for the Promotion of Joint International Research (International Leading Research )
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Comparative single-cell analysis of disease-derived stem cells to identify the cell fate defect on the cell differentiation trajectoryPrincipal Investigator

    • Principal Investigator
      中戸 隆一郎
    • Project Period (FY)
      2023 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      The University of Tokyo
  •  The novel roles of nuclear bodies formed by nucleoporin fusion proteins

    • Principal Investigator
      岡 正啓
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 48040:Medical biochemistry-related
    • Research Institution
      Osaka University
      National Institutes of Biomedical Innovation, Health and Nutrition
  •  幼年期の脳発達を司る神経細胞種特異的な遺伝子発現調節:コヒーシンの役割

    • Principal Investigator
      酒井 晶子
    • Project Period (FY)
      2021 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 46010:Neuroscience-general-related
    • Research Institution
      Niigata University
  •  Regulation of Enhanceosome by Cohesin

    • Principal Investigator
      白髭 克彦
    • Project Period (FY)
      2020 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Review Section
      Broad Section G
    • Research Institution
      The University of Tokyo
  •  Role of Cohesin, a DNA motor, in transcriptional elongation

    • Principal Investigator
      白髭 克彦
    • Project Period (FY)
      2020
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
    • Research Institution
      The University of Tokyo
  •  Molecular mechanism in hematopoiesis of arachnoid cell induced by pulsatile flow

    • Principal Investigator
      Youichiro Wada
    • Project Period (FY)
      2019 – 2020
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 56:Surgery related to the biological and sensory functions and related fields
    • Research Institution
      The University of Tokyo
  •  Regulation of chromatin structure by cohesin in critical period plasticity

    • Principal Investigator
      SAKAI Akiko
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 46010:Neuroscience-general-related
    • Research Institution
      Niigata University
  •  Molecular mechanism of differentiation from arachnoid cells to endothelium

    • Principal Investigator
      WADA YOUICHIRO
    • Project Period (FY)
      2017 – 2018
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Research Field
      Biomedical structure and function and related fields
    • Research Institution
      The University of Tokyo
  •  Development of an integrated platform for analysis of epigenome and single-cell dataPrincipal Investigator

    • Principal Investigator
      Nakato Ryuichiro
    • Project Period (FY)
      2017 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Analysis of cohesin acetyltransferase on transcriptional regulation

    • Principal Investigator
      Bando Masashige
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Genome biology
    • Research Institution
      The University of Tokyo
  •  Integration and normalization method for improving the comparative epigenome pipelinePrincipal Investigator

    • Principal Investigator
      Nakato Ryuichiro
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      System genome science
    • Research Institution
      The University of Tokyo
  •  Analysis of the regulatory network of cohesin acetylation

    • Principal Investigator
      Bando Masashige
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Genome biology
    • Research Institution
      The University of Tokyo
  •  The method for reconstructing chromosomal conformation through informaticsPrincipal Investigator

    • Principal Investigator
      NAKATO Ryuichiro
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      System genome science
    • Research Institution
      The University of Tokyo
  •  Functional analysis of chromatin dynamics during aging by genomic approach

    • Principal Investigator
      SAKAI Akiko
    • Project Period (FY)
      2010 – 2012
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Genome biology
    • Research Institution
      Niigata University
      Tokyo Institute of Technology

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 Other

All Journal Article Presentation Book

  • [Book] Dockerプラットフォームを用いたシングルセル解析支援2021

    • Author(s)
      中戸 隆一郎
    • Total Pages
      7
    • Publisher
      羊土社
    • ISBN
      9784758103961
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Book] 実験医学別冊 クロマチン解析実践プロトコール2020

    • Author(s)
      中戸 隆一郎
    • Total Pages
      6
    • Publisher
      羊土社
    • ISBN
      9784758122481
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Book] シングルセルRNA-seq情報解析最前線2019

    • Author(s)
      中戸 隆一郎
    • Total Pages
      7
    • Publisher
      羊土社
    • ISBN
      9784758103831
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Book] 「実験医学」2016年6月増刊号:エピゲノムのダイナミズムを解き明かす大規模比較解析 ―血管内皮細胞を例に2016

    • Author(s)
      中戸隆一郎, 和田洋一郎, 白髭克彦
    • Total Pages
      7
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Book] 実験医学2012

    • Author(s)
      中戸隆一郎, 伊藤武彦, 白髭克彦, 次世代シークエンサーによる染色体構造解析
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] Phase-separated nuclear bodies of nucleoporin fusions promote condensation of MLL1/CRM1 and rearrangement of 3D genome structure2023

    • Author(s)
      Oka Masahiro、Otani Mayumi、Miyamoto Yoichi、Oshima Rieko、Adachi Jun、Tomonaga Takeshi、Asally Munehiro、Nagaoka Yuya、Tanaka Kaori、Toyoda Atsushi、Ichikawa Kazuki、Morishita Shinichi、Isono Kyoichi、Koseki Haruhiko、Nakato Ryuichiro、Ohkawa Yasuyuki、Yoneda Yoshihiro
    • Journal Title

      Cell Reports

      Volume: 42 Issue: 8 Pages: 112884-112884

    • DOI

      10.1016/j.celrep.2023.112884

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22KK0111, KAKENHI-PROJECT-22K19275, KAKENHI-PLANNED-19H05745, KAKENHI-PUBLICLY-22H04676, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00372, KAKENHI-PROJECT-23K27373
  • [Journal Article] Mesenchymal loss of p53 alters stem cell capacity and models human soft tissue sarcoma traits.2023

    • Author(s)
      Sorimachi Y, Kobayashi H, Shiozawa Y, Koide S, Nakato R, Shimizu Y, Okamura T, Shirahige K, Iwama A, Goda N, Takubo K, Takubo K.
    • Journal Title

      Stem Cell Reports

      Volume: S2213-6711(23) Issue: 5 Pages: 00097-8

    • DOI

      10.1016/j.stemcr.2023.03.009

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-23K06416, KAKENHI-PROJECT-21K08431, KAKENHI-PROJECT-22K19550, KAKENHI-PROJECT-22K16298, KAKENHI-PROJECT-22KJ2948, KAKENHI-PLANNED-19H05746, KAKENHI-PROJECT-19H05653, KAKENHI-PROJECT-20H05686, KAKENHI-PROJECT-21H02957
  • [Journal Article] Transient Methionine Deprivation Triggers Histone Modification and Potentiates Differentiation of Induced Pluripotent Stem Cells.2023

    • Author(s)
      Ozawa H, Kambe A, Hibi K, Murakami S, Oikawa A, Handa T, Fujiki K, Nakato R, Shirahige K, Kimura H, Shiraki N, Kume S
    • Journal Title

      Stem Cells.

      Volume: 41(3) Issue: 3 Pages: 271-286

    • DOI

      10.1093/stmcls/sxac082

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-20H05940, KAKENHI-PLANNED-18H05527, KAKENHI-PROJECT-22K19543, KAKENHI-PROJECT-20H05686, KAKENHI-PROJECT-21H02978
  • [Journal Article] Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors2023

    • Author(s)
      Nakato Ryuichiro、Sakata Toyonori、Wang Jiankang、Nagai Luis Augusto Eijy、Nagaoka Yuya、Oba Gina Miku、Bando Masashige、Shirahige Katsuhiko
    • Journal Title

      Nature Communications

      Volume: 14 Issue: 1 Pages: 5647-5647

    • DOI

      10.1038/s41467-023-41316-4

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-22K06177, KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-20H05686, KAKENHI-PROJECT-23K27159
  • [Journal Article] Cell cycle-dependent gene networks for cell proliferation activated by nuclear CK2α complexes2023

    • Author(s)
      Homma Miwako Kato、Nakato Ryuichiro、Niida Atsushi、Bando Masashige、Fujiki Katsunori、Yokota Naoko、Yamamoto So、Shibata Takeshi、Takagi Motoki、Yamaki Junko、Kozuka-Hata Hiroko、Oyama Masaaki、Shirahige Katsuhiko、Homma Yoshimi
    • Journal Title

      Life Science Alliance

      Volume: 7 Issue: 1 Pages: e202302077-e202302077

    • DOI

      10.26508/lsa.202302077

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-21H05280, KAKENHI-PROJECT-20H05686
  • [Journal Article] Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation.2022

    • Author(s)
      Wang J, Bando M, Shirahige K, Nakato R.
    • Journal Title

      Nat Commun

      Volume: 13(1) Issue: 1 Pages: 3218-3218

    • DOI

      10.1038/s41467-022-30792-9

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-20H05686
  • [Journal Article] The splicing factor DHX38/PRP16 is required for ovarian clear cell carcinoma tumorigenesis, as revealed by a CRISPR‐Cas9 screen2022

    • Author(s)
      Cona Brandon、Hayashi Tomoatsu、Yamada Ai、Shimizu Naomi、Yokota Naoko、Nakato Ryuichiro、Shirahige Katsuhiko、Akiyama Tetsu
    • Journal Title

      FEBS Open Bio

      Volume: 12 Issue: 3 Pages: 582-593

    • DOI

      10.1002/2211-5463.13358

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06325, KAKENHI-PLANNED-17H06331, KAKENHI-PROJECT-21H02693
  • [Journal Article] Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells2022

    • Author(s)
      Hada M, Miura H, Tanigawa A, Matoba S, Inoue K, Ogonuki N, Hirose M, Watanabe N, Nakato R, Fujiki K, Hasegawa A, Sakashita A, Okae H, Miura K, Shikata D, Arima T, Shirahige K, Hiratani I, Ogura A.
    • Journal Title

      Genes Dev

      Volume: 36 Issue: 1-2 Pages: 84-102

    • DOI

      10.1101/gad.348782.121

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20K21384, KAKENHI-PLANNED-18H05530, KAKENHI-PLANNED-19H05758, KAKENHI-PUBLICLY-20H04934, KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-20K20582, KAKENHI-PROJECT-19K16017, KAKENHI-PROJECT-20K15705, KAKENHI-PROJECT-21K15108, KAKENHI-PROJECT-20H05686, KAKENHI-PROJECT-21H04834, KAKENHI-PROJECT-21K19546, KAKENHI-PROJECT-23K20298
  • [Journal Article] HSF1 phosphorylation establishes an active chromatin state via the TRRAP TIP60 complex and promotes tumorigenesis2022

    • Author(s)
      Fujimoto Mitsuaki、Takii Ryosuke、Matsumoto Masaki、Okada Mariko、Nakayama Keiich I.、Nakato Ryuichiro、Fujiki Katsunori、Shirahige Katsuhiko、Nakai Akira
    • Journal Title

      Nature Communications

      Volume: 13 Issue: 1 Pages: 4355-4355

    • DOI

      10.1038/s41467-022-32034-4

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K19288, KAKENHI-PROJECT-20H05686, KAKENHI-PROJECT-21H02697, KAKENHI-PROJECT-20K21386, KAKENHI-PLANNED-20H05930, KAKENHI-PROJECT-23K23870, KAKENHI-PROJECT-18H05215
  • [Journal Article] Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks.2022

    • Author(s)
      Jeppsson K, Sakata T, Nakato R, Milanova S, Shirahige K, Bjorkegren C.
    • Journal Title

      Sci Adv.

      Volume: 8(23) Issue: 23

    • DOI

      10.1126/sciadv.abn7063

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-20H05686, KAKENHI-WRAPUP-20H05601
  • [Journal Article] Development of human iPSC-derived quiescent hepatic stellate cell-like cells for drug discovery and in vitro disease modeling2021

    • Author(s)
      Koui Yuta、Himeno Misao、Mori Yusuke、Nakano Yasuhiro、Saijou Eiko、Tanimizu Naoki、Kamiya Yoshiko、Anzai Hiroko、Maeda Natsuki、Wang Luyao、Yamada Tadanori、Sakai Yasuyuki、Nakato Ryuichiro、Miyajima Atsushi、Kido Taketomo
    • Journal Title

      Stem Cell Reports

      Volume: 16 Issue: 12 Pages: 3050-3063

    • DOI

      10.1016/j.stemcr.2021.11.002

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K07958, KAKENHI-PROJECT-18K15773, KAKENHI-PROJECT-20J40236, KAKENHI-PLANNED-17H06331, KAKENHI-PROJECT-21H02710, KAKENHI-PROJECT-20K05843, KAKENHI-PROJECT-20K17042
  • [Journal Article] Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data2021

    • Author(s)
      Nakajima N, Hayashi T, Fujiki K, Shirahige K, Akiyama T, Akutsu T, Nakato R.
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.03.15.435370

    • Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data2021

    • Author(s)
      Wang Jiankang、Nakato Ryuichiro
    • Journal Title

      Briefings in Bioinformatics

      Volume: 23 Issue: 1

    • DOI

      10.1093/bib/bbab509

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data2021

    • Author(s)
      Nakajima N, Hayashi T, Fujiki K, Shirahige K, Akiyama T, Akutsu T, Nakato R.
    • Journal Title

      Nucleic Acids Res

      Volume: 49 Issue: 18 Pages: e104-e104

    • DOI

      10.1093/nar/gkab601

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K21384, KAKENHI-PLANNED-17H06325, KAKENHI-PLANNED-17H06331, KAKENHI-PLANNED-20H05940, KAKENHI-PROJECT-21H02693
  • [Journal Article] Databases for Protein-Protein Interactions2021

    • Author(s)
      Nakajima Natsu、Akutsu Tatsuya、Nakato Ryuichiro
    • Journal Title

      Methods in Molecular Biology

      Volume: - Pages: 229-248

    • DOI

      10.1007/978-1-0716-1641-3_14

    • ISBN
      9781071616406, 9781071616413
    • Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] Toward understanding the dynamic state of 3D genome2020

    • Author(s)
      Shinkai S, Onami S, Nakato R.
    • Journal Title

      Computational and Structural Biotechnology Journal

      Volume: 18 Pages: 2259-2269

    • DOI

      10.1016/j.csbj.2020.08.014

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331, KAKENHI-PLANNED-18H05412, KAKENHI-PUBLICLY-20H05550, KAKENHI-PROJECT-19K22679
  • [Journal Article] Methods for ChIP-seq analysis: A practical workflow and advanced applications2020

    • Author(s)
      Ryuichiro Nakato, Toyonori Sakata
    • Journal Title

      Methods

      Volume: Epub ahead of print Pages: 44-53

    • DOI

      10.1016/j.ymeth.2020.03.005

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity2020

    • Author(s)
      Tanaka, S. Ise, W. Inoue, T. Ito, A. Ono, C. Shima, Y. Sakakibara, S. Nakayama, M. Fujii, K. Miura, I. Sharif, J. Koseki, H. Koni, P. A. Raman, I. Li, Q. Z. Kubo, M. Fujiki, K. Nakato, R. Shirahige, K. Araki, H. Miura, F. Ito, T. Kawakami, E. Baba, Y. Kurosaki, T.
    • Journal Title

      Nature Immunology

      Volume: 21 Issue: 8 Pages: 950-961

    • DOI

      10.1038/s41590-020-0700-y

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K08883, KAKENHI-PROJECT-20K21384, KAKENHI-PLANNED-17H06331, KAKENHI-PLANNED-19H05745, KAKENHI-PROJECT-16H02622, KAKENHI-PROJECT-18H02626, KAKENHI-PROJECT-19H03491, KAKENHI-PROJECT-19K22537, KAKENHI-PROJECT-20H03503
  • [Journal Article] Paternal restraint stress affects offspring metabolism via ATF-2 dependent mechanisms in Drosophila melanogaster germ cells2020

    • Author(s)
      Seong KH, Ly NH, Katou Y, Yokota N, Nakato R, Murakami S, Hirayama A, Fukuda S, Kang S, Soga T, Shirahige K, Ishii S.
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1

    • DOI

      10.1038/s42003-020-0992-3

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] PHi-C: deciphering Hi-C data into polymer dynamics2020

    • Author(s)
      Shinkai Soya、Nakagawa Masaki、Sugawara Takeshi、Togashi Yuichi、Ochiai Hiroshi、Nakato Ryuichiro、Taniguchi Yuichi、Onami Shuichi
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 2 Issue: 2

    • DOI

      10.1093/nargab/lqaa020

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K06612, KAKENHI-PROJECT-17K15050, KAKENHI-PLANNED-17H06331, KAKENHI-PUBLICLY-18H04720, KAKENHI-PLANNED-18H05412, KAKENHI-PROJECT-20K20458, KAKENHI-PLANNED-18H05531, KAKENHI-PROJECT-19H02567
  • [Journal Article] Transcription and replication organize cohesin-dependent chromosome loops2020

    • Author(s)
      Jeppsson K, Sakata T, Nakato R, Milanova S, Shirahige K, Bjoerkegren C.
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.12.16.423068

    • Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment2019

    • Author(s)
      Fiordaliso Sarah K.、.....Shirahige Katsuhiko、Izumi Kosuke
    • Journal Title

      The American Journal of Human Genetics

      Volume: 105 Issue: 5 Pages: 987-995

    • DOI

      10.1016/j.ajhg.2019.09.009

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-17H06331, KAKENHI-PROJECT-17H01539, KAKENHI-PROJECT-19H03621, KAKENHI-INTERNATIONAL-15K21761
  • [Journal Article] The novel lncRNA CALIC upregulates AXL to promote colon cancer metastasis2019

    • Author(s)
      Kawasaki Y、Miyamoto M、Oda T、Matsumura K、Negishi L、Nakato R、Suda S、Yokota N、Shirahige K、Akiyama T.
    • Journal Title

      EMBO reports

      Volume: 20 Issue: 8

    • DOI

      10.15252/embr.201847052

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-17H06324, KAKENHI-PLANNED-17H06325, KAKENHI-PLANNED-17H06331, KAKENHI-PROJECT-17H01537, KAKENHI-PROJECT-20K20379, KAKENHI-PROJECT-16H04692
  • [Journal Article] Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells2019

    • Author(s)
      Nakato R, Wada Y, Nakaki R, Nagae G, Katou Y, Tsutsumi S, Nakajima N, Fukuhara H, Iguchi A, Kohro T, Kanki Y, Saito Y, Kobayashi M, Izumi-Taguchi A, Osato N, Tatsuno K, Kamio A, Hayashi-Takanaka Y, Wada H, Ohta S, Aikawa M, Nakajima H, Nakamura M, McGee RC, Heppner KW, Kawakatsu T, Genno M, Yanase H, Kume H, et al.
    • Journal Title

      Epigenetics & Chromatin

      Volume: 12 Issue: 1 Pages: 77-77

    • DOI

      10.1186/s13072-019-0319-0

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K00387, KAKENHI-PROJECT-18K07963, KAKENHI-PROJECT-19K20409, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-17H06331, KAKENHI-PLANNED-17H06410, KAKENHI-PLANNED-18H05527, KAKENHI-PLANNED-19H05744, KAKENHI-PROJECT-17H03614, KAKENHI-INTERNATIONAL-15K21761
  • [Journal Article] Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile2018

    • Author(s)
      Ryuichiro Nakato, Katsuhiko Shirahige
    • Journal Title

      Bioinformatics

      Volume: 印刷中

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Journal Article] Statistical Analysis and Quality Assessment of ChIP-seq Data with DROMPA.2018

    • Author(s)
      Nakato R, Shirahige K.
    • Journal Title

      Methods Mol Biol.

      Volume: 1672 Pages: 631-643

    • DOI

      10.1007/978-1-4939-7306-4_41

    • ISBN
      9781493973057, 9781493973064
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-15K18465
  • [Journal Article] Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile2018

    • Author(s)
      Ryuichiro Nakato, Katsuhiko Shirahige
    • Journal Title

      Bioinformatics

      Volume: 印刷中

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Journal Article] Decreased cohesion in the brain leads to defective synapse development and anxiety-related behavior2017

    • Author(s)
      Fujita Y, Masuda K, Bando M, Nakato R, Katou Y, Tanaka T, Nakayama M, Takao K, Miyakawa T, Tanaka T, Ago Y, Hashimoto H, Shirahige K, Yamashita T.
    • Journal Title

      J. Exp. Med.

      Volume: 印刷中 Issue: 5 Pages: 1431-1452

    • DOI

      10.1084/jem.20161517

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-15H01288, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-16H04718, KAKENHI-PROJECT-26293020, KAKENHI-PROJECT-26670122, KAKENHI-INTERNATIONAL-15K21761, KAKENHI-PROJECT-16K01946, KAKENHI-PUBLICLY-16H01270, KAKENHI-PUBLICLY-17H06051, KAKENHI-PROJECT-17H06178, KAKENHI-PROJECT-16K18364, KAKENHI-PROJECT-16H06276
  • [Journal Article] Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.2016

    • Author(s)
      Nakato R, Shirahige K.
    • Journal Title

      Brief Bioinform

      Volume: 12 Pages: 1-12

    • DOI

      10.1093/bib/bbw023

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-INTERNATIONAL-15K21761, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-15K18465
  • [Journal Article] Assembly of Slx4 signaling complexes behind DNA replication forks2015

    • Author(s)
      Attila Balint, TaeHyung Kim, David Gallo, Jose Renato Cussiol, Francisco M Bastos de Oliveira, Askar Yimit, Jiongwen Ou, Ryuichiro Nakato, Alexey Gurevich, Katsuhiko Shirahige, Marcus B Smolka, Zhaolei Zhang, Grant W Brown
    • Journal Title

      The EMBO Journal

      Volume: 34 Issue: 16 Pages: 2182-2197

    • DOI

      10.15252/embj.201591190

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976
  • [Journal Article] The Deubiquitinating Enzyme USP7 Regulates Androgen Receptor Activity by Modulating Its Binding to Chromatin2015

    • Author(s)
      Shu-Ting Chen, Maiko Okada, Ryuichiro Nakato, Kosuke Izumi, Masashige Bando and Katsuhiko Shirahige
    • Journal Title

      Journal of Biological Chemistry

      Volume: 290 Issue: 35 Pages: 21713-21723

    • DOI

      10.1074/jbc.m114.628255

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PUBLICLY-26102741, KAKENHI-PROJECT-15H02369, KAKENHI-PROJECT-25290065
  • [Journal Article] Esco1 Acetylates Cohesin via a Mechanism Different from That of Esco22015

    • Author(s)
      Masashi Minamino, Mai Ishibashi, Ryuichiro Nakato, Kazuhiro Akiyama, Hiroshi Tanaka, Yuki Kato, Lumi Negishi, Toru Hirota, Takashi Sutani, Masashige Bando, Katsuhiko Shirahige
    • Journal Title

      Current Biology

      Volume: 25 Issue: 13 Pages: 1694-1706

    • DOI

      10.1016/j.cub.2015.05.017

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-15H05977, KAKENHI-PUBLICLY-26114718, KAKENHI-PUBLICLY-26116523, KAKENHI-PROJECT-15H02365, KAKENHI-PROJECT-15J10948, KAKENHI-PROJECT-26640086, KAKENHI-PROJECT-24370076, KAKENHI-PROJECT-25290065
  • [Journal Article] Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation2015

    • Author(s)
      Takashi Sutani, Toyonori Sakata, Ryuichiro Nakato, Koji Masuda, Mai Ishibashi, Daisuke Yamashita, Yutaka Suzuki, Tatsuya Hirano, Masashige Bando, Katsuhiko Shirahige
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 1-13

    • DOI

      10.1038/ncomms8815

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-PUBLICLY-15H01347, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PROJECT-15J10909, KAKENHI-PROJECT-25290065
  • [Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation2015

    • Author(s)
      Takashi Kubota, Yuki Katou, Ryuichiro Nakato, Katsuhiko Shirahige, Anne D. Donaldson
    • Journal Title

      Cell Reports

      Volume: 12 Issue: 5 Pages: 774-787

    • DOI

      10.1016/j.celrep.2015.06.066

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465, KAKENHI-ORGANIZER-15H05970, KAKENHI-PLANNED-15H05976, KAKENHI-PLANNED-23114003
  • [Journal Article] Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.2015

    • Author(s)
      Izumi K, Nakato R, Zhang Z, Edmondson AC, Noon S, Dulik MC, Rajagopalan R, Venditti CP, Gripp K, Samanich J, Zackai EH, Deardorff MA, Clark D, Allen JL, Dorsett D, Misulovin Z, Komata M, Bando M, Kaur M, Katou Y, Shirahige K*, Krantz ID*.
    • Journal Title

      Nature Genetics

      Volume: 47 Issue: 4 Pages: 338-338

    • DOI

      10.1038/ng.3229

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065, KAKENHI-PLANNED-23114003, KAKENHI-PUBLICLY-15H01347
  • [Journal Article] Smc5/6-mediated regulation of replication progression contributes to chromosome assembly during mitosis in human cells.2014

    • Author(s)
      Gallego-Paez LM, Tanaka H, Bando M, Takahashi M, Nozaki N, Nakato R, Shirahige K*, Hirota T*.(Shared Corresponding Authors)
    • Journal Title

      Mol Biol Cell.

      Volume: 27 Issue: 2 Pages: 2736-2748

    • DOI

      10.1091/mbc.e13-01-0020

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-22221009, KAKENHI-PUBLICLY-24114517, KAKENHI-PROJECT-24370076, KAKENHI-PROJECT-25290065, KAKENHI-PUBLICLY-26116523, KAKENHI-PROJECT-26640086
  • [Journal Article] Chromatin immunoprecipitation protocol for mammalian cells.2014

    • Author(s)
      Komata M, Katou Y, Tanaka H, Nakato R, Shirahige K, Bando M.
    • Journal Title

      Methods Mol Biol.

      Volume: 1164 Pages: 33-38

    • DOI

      10.1007/978-1-4939-0805-9_4

    • ISBN
      9781493908042, 9781493908059
    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-22221009, KAKENHI-PROJECT-25290065
  • [Journal Article] PRDM14 Ensures Naive Pluripotency through Dual Regulation of Signaling and Epigenetic Pathways in Mouse Embryonic Stem Cells2013

    • Author(s)
      Yamaji M., Ueda J., Hayashi K., Ohta H., Yabuta Y., Kurimoto K., Nakato R., Yamada Y., Shirahige K., Saitou M.
    • Journal Title

      Cell Stem Cell

      Volume: 12 Pages: 368-382

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data2013

    • Author(s)
      Nakato, R., Itoh T., Shirahige K.
    • Journal Title

      Genes to Cells

      Volume: 18

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] Eukaryotic replisome components cooperate to process histones during chromosome replication2013

    • Author(s)
      Foltman M., Evrin C., De Piccoli G., Jones R.C., Edmondson R.D., Katou Y., Nakato R., Shirahige K., Labib K.
    • Journal Title

      Cell Rep

      Volume: 3 Pages: 892-904

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] DROMPA: easy‐to‐handle peak calling and visualization software for the computational analysis and validation of ChIP‐seq data2013

    • Author(s)
      Ryuichiro Nakato
    • Journal Title

      Genes to Cells

      Volume: 18 Issue: 7 Pages: 589-601

    • DOI

      10.1111/gtc.12058

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22125008, KAKENHI-PROJECT-23710230
  • [Journal Article] Replisome stability at defective DNA replication forks is independent of S-phase checkpoint kinases2012

    • Author(s)
      De Piccoli, G., Katou, Y., Itoh, T., Nakato, R., Shirahige, K., and Labib, K.
    • Journal Title

      Molecular Cell

      Volume: 45 Pages: 696-704

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast2012

    • Author(s)
      Tazumi A., Fukuura M., Nakato R., Kishimoto A., Takenaka T., Ogawa S.,Song J.H., Takahashi T.S., Nakagawa T., Shirahige K., Masukata H.
    • Journal Title

      Genes Dev

      Volume: 26 Pages: 2050-2062

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle2012

    • Author(s)
      Deardorff M.A., Bando M., Nakato, R.(他39名)
    • Journal Title

      Nature

      Volume: 489 Pages: 313-317

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] Origin Association of Sld3, Sld7, and Cdc45Proteins Is a Key Step for Determination of Origin-Firing Timing2011

    • Author(s)
      Tanaka S., Nakato R., Katou Y., Shirahige K., Araki H.
    • Journal Title

      Current Biol

      Volume: 21 Pages: 2055-2063

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] The inheritance of histone modifications depends upon the location in the chromosome in Saccharomyces cerevisiae2011

    • Author(s)
      Masumoto H., Nakato, R., Kanemaki M., Shirahige K., Hachinohe M.
    • Journal Title

      PLoS ONE

      Volume: 6

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] The inheritance of histone modifications depends upon the location in the chromosome in Saccharomyces cerevisiae2011

    • Author(s)
      Masumoto H, Nakato, R., Kanemaki M, Shirahige K, Hachinohe M.
    • Journal Title

      PLoS ONE

      Volume: 6 Issue: 12 Pages: e28980-e28980

    • DOI

      10.1371/journal.pone.0028980

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23710230
  • [Journal Article] Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing2011

    • Author(s)
      Tanaka, S., Nakano, R., Katou, Y., Shirahige, K. and Araki, H.
    • Journal Title

      Curr. Biol

      Volume: 21 Issue: 24 Pages: 2055-2063

    • DOI

      10.1016/j.cub.2011.11.038

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20227004, KAKENHI-PROJECT-20370005, KAKENHI-PUBLICLY-22019039, KAKENHI-ORGANIZER-22125001, KAKENHI-PROJECT-22221009, KAKENHI-ORGANIZER-23114001, KAKENHI-PLANNED-23114003, KAKENHI-PROJECT-23710230
  • [Presentation] Large-scale multi-omics analysis to explore the function of cohesin complex2023

    • Author(s)
      Ryuichiro Nakato
    • Organizer
      NTU-UTokyo Joint Conference 2023
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K27159
  • [Presentation] Large-scale computational genomics: tools for decoding genomic features2023

    • Author(s)
      Ryuichiro Nakato
    • Organizer
      Human Genetics Asia 2023
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K27159
  • [Presentation] Large-scale multi-omics analysis to dissect the context-specific role of cohesin in chromatin folding and gene expression2023

    • Author(s)
      Ryuichiro Nakato
    • Organizer
      CEEHRC 9th Annual Canadian Conference on Epigenetics
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K27159
  • [Presentation] 幼若脳の抑制性ニューロン発達に伴う遺伝子発現とクロマチン制御におけるコヒーシンローダーの役割2023

    • Author(s)
      酒井晶子、中戸隆一郎、大庭ジーナ未来、西條栄子、Heiko Peters, 白髭克彦、杉山清佳
    • Organizer
      第46回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-21K06389
  • [Presentation] 幼若脳の神経発達においてコヒーシンローダーは遺伝子発現とクロマチン制御に必要である2022

    • Author(s)
      酒井晶子、中戸隆一郎、大庭ジーナ未来、Heiko Peters、白髭克彦、杉山清佳
    • Organizer
      第45回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-21K06389
  • [Presentation] 生後脳の経験依存的な抑制性ニューロン発達におけるコヒーシンローダーの役割2021

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第38回染色体ワークショプ・第19回核ダイナミクス研究会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data2021

    • Author(s)
      Natsu Nakajima, Tomoatsu Hayashi, Katsunori Fujiki, Katsuhiko Shirahige, Tetsu Akiyama, Tatsuya Akutsu, Ryuichiro Nakato
    • Organizer
      第10回生命医薬情報学連合大会 (IIBMP2021)
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Integrative study of hepatic fibrosis resolution mechanisms using single-cell RNA sequencing2021

    • Author(s)
      Eiko Saijou, Ryuichiro Nakato
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Experience-dependent development of interneuron in juvenile brain requires cohesin-loader Nipbl2021

    • Author(s)
      Sakai, A., Nakato, R., Oba, G.M., Peters. H., Shirahige, K., Sugiyama, S.
    • Organizer
      第44回日本神経科学大会/第1回CJK国際会議
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21K06389
  • [Presentation] コヒーシンローダーNipblは幼若脳の経験依存的な抑制性ニューロン発達に必要である2021

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] Single-cell RNA trajectory to infer dedifferentiation in Drosophila midgut2021

    • Author(s)
      Luis Augusto Eijy Nagai, Hiroki Nagai, Yuichiro Nakajima, Ryuichiro Nakato
    • Organizer
      第44回日本分子生物学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] 群雄割拠のシングルセル情報解析:現状把握とその先2020

    • Author(s)
      中戸 隆一郎
    • Organizer
      第9回生命医薬情報学連合大会 (IIBMP2020)
    • Invited
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] 群雄割拠のシングルセル情報解析:現状把握とその先2020

    • Author(s)
      中戸 隆一郎
    • Organizer
      第9回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-19K22679
  • [Presentation] 幼若脳の経験依存的な抑制性介在ニューロン発達におけるコヒーシンローダーの役割2020

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第43回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] Identifying mutually exclusive gene sets from sparse scRNA-seq data2020

    • Author(s)
      Nakajima N., Hayashi T., Akiyama T., Akutsu T. and Nakato R.
    • Organizer
      第43回日本分子生物学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Large-scale analysis of multi-omics data toward the elucidation of epigenomic diversity2020

    • Author(s)
      中戸 隆一郎
    • Organizer
      第2回 ASHBi数理生物研究集会
    • Data Source
      KAKENHI-PROJECT-19K22679
  • [Presentation] Role of cohesin loader in experience-dependent development of interneuron in juvenile brain2020

    • Author(s)
      Sakai, A., Nakato, R., Peters. H., Shirahige, K., Sugiyama, S.
    • Organizer
      第43回日本神経科学大会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] Large-scale analysis of multi-omics data toward the elucidation of epigenomic diversity2020

    • Author(s)
      中戸 隆一郎
    • Organizer
      第2回 ASHBi数理生物研究集会
    • Invited
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] 生後脳の経験依存的なニューロン発達へのコヒーシンの関与2019

    • Author(s)
      酒井晶子、中戸隆一郎、白髭克彦、杉山清佳
    • Organizer
      第37回染色体ワークショップ・第18回核ダイナミクス研究会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] Integrated analysis of gene expression and chromatin folding regulated by cohesin, cohesin loader and CTCF2019

    • Author(s)
      Ryuichiro Nakato
    • Organizer
      第13回国際ゲノム会議
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Regulation of chromatin structure by cohesin during juvenile cortical development2019

    • Author(s)
      Akiko Sakai, Ryuichiro Nakato, Heiko Peters, Katsuhiko Shirahige, Sayaka Sugiyama
    • Organizer
      第42回日本神経科学大会・第62回日本神経化学会大会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] シングルセル解析のための情報解析技術の現状と展望2019

    • Author(s)
      中戸 隆一郎
    • Organizer
      第42回日本分子生物学会年会, ワークショップ「細胞社会ダイバーシティーの統合的解明と制御に挑む1細胞・1分子計測の数理科学」(兼オーガナイザー)
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Comparative analysis of gene co-expression networks of Glioblastoma2018

    • Author(s)
      仲嶋なつ, 中戸隆一郎
    • Organizer
      日本バイオインフォマティクス学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] 経験による脳の発達に必須な抑制性介在ニューロンにおける転写制御2018

    • Author(s)
      酒井 晶子・中戸 隆一郎・凌 一葦・侯 旭濱・飯島 友也・原 範和・桑野 良三・奥田 修二郎・白髭 克彦・杉山 清佳
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PROJECT-18K06479
  • [Presentation] シングルセルデータから得られた遺伝子共発現ネットワークの比較解析2018

    • Author(s)
      仲嶋なつ, 林寛敦, 藤木克則, 秋山徹, 白髭克彦, 中戸隆一郎
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] Characterization of chromatin folding mechanisms regulated by cohesin, cohesin loader and CTCF2018

    • Author(s)
      Ryuichiro Nakato, Toyonori Sakata, Soya Shinkai, Katsuhiko Shirahige.
    • Organizer
      Keystone Symposia "Chromatin Architecture and Chromosome Organization (X5)"
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Presentation] シングルセルRNA-seqのためのデータ高感度化及び数理モデリング手法の開発2018

    • Author(s)
      中戸隆一郎
    • Organizer
      第41回日本分子生物学会年会
    • Data Source
      KAKENHI-PLANNED-17H06331
  • [Presentation] バイオインフォマティクスで切り開くエピゲノム解析2017

    • Author(s)
      中戸隆一郎
    • Organizer
      Heart rhythm interdisciplinary Association (HEIAN) Forum
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Presentation] Transcription network in cerebral vascular system suggested by epigenetic analysis2017

    • Author(s)
      WADA H, ISHII N, SEKIHARA Y, OTA S, NAKAKI R, NAKATO R, WADA Y, MATSUNO A
    • Organizer
      The 26th European Stroke Conference
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19512
  • [Presentation] ゲノムのダイナミズムを解き明かす大規模ChIP-seq解析2017

    • Author(s)
      中戸隆一郎
    • Organizer
      理研シンポジウム「細胞システムの動態と論理 IX」
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Presentation] Cohesin loader regulates transition from pausing to elongation of RNA PolII2016

    • Author(s)
      Masashige Bando, Kazuhiro Akiyama, Ryuichiro Nakato, Katsuhiko Shirahige
    • Organizer
      Epigenetics and chromatin, cold spring harbor meeting
    • Place of Presentation
      Cold spring harbor (USA)
    • Year and Date
      2016-09-13
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04718
  • [Presentation] Method of identifying biased data for large-scale ChIP-seq analysis2016

    • Author(s)
      Ryuichiro Nakato
    • Organizer
      The EMBO Meeting "From Functional Genomics to Systems Biology"
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2016-11-12
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K18465
  • [Presentation] The role of cohesin and cohesin loader in transcripitional regulation2015

    • Author(s)
      Masashige Bando, Ryuichiro Nakato, Kazuhiro Akiyama, Hiroshi Tanaka, Yuki Katou, Katsuhiko Shirahige
    • Organizer
      EMBO workshop ‘SMC proteins’
    • Place of Presentation
      siena, Italy
    • Year and Date
      2015-05-12
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25290065
  • [Presentation] 臨界期におけるマウス視覚野のクロマチン動態の解析2012

    • Author(s)
      酒井晶子、中戸隆一郎、桑野良三、白髭克彦、杉山清佳
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      名古屋
    • Data Source
      KAKENHI-PROJECT-22710183
  • [Presentation] The role of Cohesin loader in transcripitional regulation

    • Author(s)
      Masashige Bando, Ryuichiro Nakato, Kazuhiro Akiyama, Hiroshi Tanaka, Yuki Katou, Katsuhiko Shirahige
    • Organizer
      The 4D nucleosome 2014
    • Place of Presentation
      広島
    • Year and Date
      2014-12-17 – 2014-12-20
    • Data Source
      KAKENHI-PROJECT-25290065
  • [Presentation] 転写調節におけるコヒーシンローダーの機能解析

    • Author(s)
      坂東優篤、中戸隆一郎、秋山和弘、田中博志、加藤由起、白髭克彦
    • Organizer
      日本分子生物学会第38年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-29 – 2014-12-02
    • Data Source
      KAKENHI-PROJECT-25290065
  • 1.  SAKAI Akiko (70532745)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 11 results
  • 2.  SHIRAHIGE Katsuhiko (90273854)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 11 results
  • 3.  Bando Masashige (90360627)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 4 results
  • 4.  WADA YOUICHIRO (10322033)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 5.  和田 裕美 (60645042)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 6.  KUWANO Ryozo (20111734)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 7.  中田 庸一 (40584793)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  須谷 尚史 (30401524)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  後藤 典子 (10251448)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  岡本 康司 (80342913)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  鈴木 穣 (40323646)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  岡 正啓 (40432504)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  足立 淳 (20437255)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 14.  小室 一成 (30260483)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 15.  野村 征太郎 (10722118)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 16.  伊藤 薫 (50375664)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 17.  小寺 聡 (80794776)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 18.  松久 直司 (90879876)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 19.  Minamino Masashi
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 20.  Sakata Toyonori
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 21.  Yoshimura Atsunori
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 22.  Ishibashi Mai
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 23.  ITOH Takehiko
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 4 results
  • 24.  OYAMA Masaaki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 25.  OSATO Naoki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 26.  宮本 洋一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 27.  中野 泰博
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 28.  広田 亨
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 29.  秋山 徹
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 30.  林 寛敦
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 31.  藤木 克則
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 32.  荒木 弘之
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 33.  田中 伸弥
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 34.  秦 裕子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 35.  松本 雅記
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 36.  橋本 均
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 37.  落合 博
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

URL: 

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi