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SUGAWARA Takeshi  菅原 武志

ORCIDConnect your ORCID iD *help
Researcher Number 60713005
Other IDs
Affiliation (Current) 2025: 高知大学, データサイエンスセンター, 特任講師
Affiliation (based on the past Project Information) *help 2025: 高知大学, データサイエンスセンター, 特任講師
2023: 高知大学, データサイエンスセンター, 特任講師
2021 – 2022: 東京大学, 大学院理学系研究科(理学部), 特任研究員
2018 – 2020: 東京大学, 大学院医学系研究科(医学部), 特任助教
2017: 広島大学, 理学研究科, 研究員
2017: 広島大学, 大学院理学研究科, 特任助教
2016 – 2017: 広島大学, 理学研究科, 特任助教
Review Section/Research Field
Principal Investigator
Basic Section 43040:Biophysics-related / System genome science
Except Principal Investigator
Thin film/Surface and interfacial physical properties / System genome science
Keywords
Principal Investigator
細胞周期・細胞分化 / データ駆動型数理モデリング / 核内染色体構造 / 3Dゲノム地形 / 準安定構造 / モデリング / 染色体構造 / クロマチン動態 / シミュレーション / 数理モデリング … More / ゲノム構造 / データ駆動 / 数理モデル / ゲノム構造変化 … More
Except Principal Investigator
コーティング / アクチュエータ / 交流電解研磨 / 真空コンダクタンス / 回転振動機構 / ナノ粒子 / 触媒 / 走査プローブ顕微鏡 / イオン選別 / 細胞工学 / 走査型プローブ顕微鏡 / ナノピペット / 温度イメージング / 染色体構造 / 蛍光寿命イメージング / フラクタル次元 / クロマチン構造 Less
  • Research Projects

    (4 results)
  • Research Products

    (15 results)
  • Co-Researchers

    (12 People)
  •  ケモフォレシス:生体高分子走化性の理論構築と生命現象への応用Principal Investigator

    • Principal Investigator
      菅原 武志
    • Project Period (FY)
      2025 – 2027
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 43040:Biophysics-related
    • Research Institution
      Kochi University
  •  Elucidating the 3D Genome LandscapePrincipal Investigator

    • Principal Investigator
      Sugawara Takeshi
    • Project Period (FY)
      2017 – 2023
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      System genome science
    • Research Institution
      Kochi University
      The University of Tokyo
      Hiroshima University
  •  Simultaneous imaging of chromatin fractal dimensions and temperature in living cell nucleus

    • Principal Investigator
      Shinkai Soya
    • Project Period (FY)
      2016 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      System genome science
    • Research Institution
      Institute of Physical and Chemical Research
      Hiroshima University
  •  Development of component technology for scanning microinjection microscope

    • Principal Investigator
      Takami Tomohide
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Thin film/Surface and interfacial physical properties
    • Research Institution
      Kogakuin University

All 2024 2023 2022 2021 2020 2019 2017 2016 2015

All Journal Article Presentation

  • [Journal Article] Chemophoresis engine: A general mechanism of ATPase-driven cargo transport2022

    • Author(s)
      Takeshi Sugawara, Kunihiko Kaneko
    • Journal Title

      PLoS Computational Biology

      Volume: 18 Issue: 7 Pages: e1010324-e1010324

    • DOI

      10.1371/journal.pcbi.1010324

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K15050, KAKENHI-PROJECT-20H00123
  • [Journal Article] Chemophoresis Engine: Universal Principle of ATPase-driven Cargo Transport2021

    • Author(s)
      Sugawara Takeshi、Kaneko Kunihiko
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.10.15.463834

    • Open Access
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Journal Article] PHi-C: deciphering Hi-C data into polymer dynamics2020

    • Author(s)
      Shinkai Soya、Nakagawa Masaki、Sugawara Takeshi、Togashi Yuichi、Ochiai Hiroshi、Nakato Ryuichiro、Taniguchi Yuichi、Onami Shuichi
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 2 Issue: 2

    • DOI

      10.1093/nargab/lqaa020

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K06612, KAKENHI-PROJECT-17K15050, KAKENHI-PLANNED-17H06331, KAKENHI-PUBLICLY-18H04720, KAKENHI-PLANNED-18H05412, KAKENHI-PROJECT-20K20458, KAKENHI-PLANNED-18H05531, KAKENHI-PROJECT-19H02567
  • [Journal Article] Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization2020

    • Author(s)
      Soya Shinkai, Takeshi Sugawara, Hisashi Miura, Ichiro Hiratani, Shuichi Onami
    • Journal Title

      Biophysical Journal

      Volume: 118 Issue: 9 Pages: 2220-2228

    • DOI

      10.1016/j.bpj.2020.02.020

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-18H04720, KAKENHI-PLANNED-18H05412, KAKENHI-PLANNED-18H05530, KAKENHI-PROJECT-20K08698
  • [Journal Article] Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast2019

    • Author(s)
      Ito H, Sugawara T, Shinkai S, Mizukawa S, Kondo A, Senda H, Sawai K, Ito K, Suzuki S, Takaine M, Yoshida S, Imamura H, Kitamura K, Namba T, Tate SI, Ueno M
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 511 Issue: 4 Pages: 820-825

    • DOI

      10.1016/j.bbrc.2019.02.128

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17K07502, KAKENHI-PROJECT-18K19301, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-18H04720, KAKENHI-PROJECT-17H03654, KAKENHI-PROJECT-16H04781
  • [Journal Article] Physical properties of the chromosomes and implications for development2017

    • Author(s)
      Sugawara Takeshi、Kimura Akatsuki
    • Journal Title

      Development, Growth & Differentiation

      Volume: 59 Issue: 5 Pages: 405-414

    • DOI

      10.1111/dgd.12363

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15KT0083, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-16H00816, KAKENHI-PROJECT-15H04372
  • [Journal Article] Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans2017

    • Author(s)
      Arai Ritsuko、Sugawara Takeshi、Sato Yuko、Minakuchi Yohei、Toyoda Atsushi、Nabeshima Kentaro、Kimura Hiroshi、Kimura Akatsuki
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 3631-3631

    • DOI

      10.1038/s41598-017-03483-5

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15KT0083, KAKENHI-PROJECT-17K15050, KAKENHI-PUBLICLY-16H00816, KAKENHI-PLANNED-25116005, KAKENHI-PROJECT-15H04372, KAKENHI-PROJECT-16H06280
  • [Presentation] 液滴-遺伝子相互作用の現象論モデル2024

    • Author(s)
      菅原武志
    • Organizer
      日本物理学会2024年春季大会
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Presentation] 生成モデルを用いた3Dゲノム動態予測2024

    • Author(s)
      菅原武志
    • Organizer
      日本物理学会2024年春季大会
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Presentation] べん毛モーター時系列テ゛ータ解析とエントロピー生成率(EPR)推定2023

    • Author(s)
      菅原武志
    • Organizer
      新学術領域研究「情報物理学でひもとく生命の秩序と設計原理 」第7回領域会議
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Presentation] 液滴誘導型細胞内走化性の理論2023

    • Author(s)
      菅原武志
    • Organizer
      第61日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Presentation] Chemophoresis engine: Theory of cargo transports using ATP hydrolysis2017

    • Author(s)
      Takeshi Sugawara, Kunihiko Kaneko
    • Organizer
      ON Workshop: Sensors, Motors and Behaviors at the Origin of Life
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K15050
  • [Presentation] Vacuum Conductance of Rare Gas through Glass Nanopipette2016

    • Author(s)
      Tomohide Takami, Kiwamu Nishimoto, Tadahiko Goto, Shuichi Ogawa, Futoshi Iwata, Takeshi Sugawara, and Yuji Takakuwa
    • Organizer
      The 20th International Vacuum Congress (IVC-20)
    • Place of Presentation
      BEXCO, Busan
    • Year and Date
      2016-08-21
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K04678
  • [Presentation] 細胞へのインジェクションに用いるナノピペットの非破壊評価法の開発2016

    • Author(s)
      高見知秀,菅原武志
    • Organizer
      生命動態システム科学四拠点合同シンポジウム
    • Place of Presentation
      シェラトンホテル広島
    • Year and Date
      2016-03-25
    • Data Source
      KAKENHI-PROJECT-15K04678
  • [Presentation] ナノピペットにおける希ガスの真空コンダクタンスの理論計算2015

    • Author(s)
      菅原武志, ○高見知秀,高桑雄二
    • Organizer
      第76回応用物理学会秋季学術講演会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2015-09-13
    • Data Source
      KAKENHI-PROJECT-15K04678
  • 1.  Shinkai Soya (60547058)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 2.  OKABE Kohki (20455398)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 3.  OCHIAI Hiroshi (60640753)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 4.  Takami Tomohide (40272455)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 5.  IWATA Futoshi (30262794)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 6.  TAKAKUWA Yuji (20154768)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 7.  TATE Shin-ichi (20216998)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  SAITO Mikako (20291346)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  MATSUOKA Hideaki (10143653)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  TAKEDA Shunsuke
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  KIMURA Akatsuki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 12.  上野 勝
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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