Rai Amit Rai Amit

… Alternative Names

ライアミットライアミット

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Researcher Number	60760535
Other IDs	https://orcid.org/0000-0002-5715-8541
Affiliation (based on the past Project Information) *help	2020 – 2023: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 2017 – 2019: 千葉大学, 大学院薬学研究院, 特任助教
Review Section/Research Field	Principal Investigator Basic Section 47050:Environmental and natural pharmaceutical resources-related Except Principal Investigator Transformative Research Areas, Section (II) / Broad Section H / Medium-sized Section 47:Pharmaceutical sciences and related fields / Natural medicines
Keywords	Principal Investigator Biosynthesis / Indole Alkaloids / Systems Biology / Specialized metabolites / Metabolite profiling / Genome analysis / Pan-Genome / OpCYP1 / Metabolic gene cluster / Secoiridoids … More / STR / Nothapodytes foetida / Evolution / Ophiorrhiza japonica / Pangenome / Metabolic gene clusters / Systems biology / Comparative genomics / Ophiorrhiza pumila / Phytogenomics / Whole genome sequencing / MIAs / Medicinal plants / Camptothecin … More Except Principal Investigator トランスクリプトーム / ゲノム / メタボローム / 甘草 / 植物二次代謝 / 薬用植物 / 二次代謝 / 代謝工学 / 生体触媒 / カンプトテシン / 統合オミクス / 代謝フロー / フラボノイド / アルカロイド / 生合成 / 遺伝子 / 薬学 Less

ゲノム－メタボロームに基づく複雑系生合成パスウェイの予測とエンジニアリング
- Principal Investigator
  
  山崎真巳
- Project Period (FY)
  2022 – 2026
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (II)
- Research Institution
  Chiba University
国内産の重要薬用資源植物の統合ゲノム科学
- Principal Investigator
  
  齊藤和季
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 47:Pharmaceutical sciences and related fields
- Research Institution
  Institute of Physical and Chemical Research
Systems biology approach to unravel biosynthesis and evolution of camptothecin, a potent anti-cancer natural productPrincipal Investigator
- Principal Investigator
  
  Rai Amit
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 47050:Environmental and natural pharmaceutical resources-related
- Research Institution
  Institute of Physical and Chemical Research
  Chiba University
Genomic origin of chemodiversity in medicinal plants
- Principal Investigator
  
  齊藤和季
- Project Period (FY)
  2019 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section H
- Research Institution
  Institute of Physical and Chemical Research
Integrated genomics on important medicinal plants in Leguminosae
- Principal Investigator
  
  Saito Kazuki
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Natural medicines
- Research Institution
  Chiba University

All 2023 2022 2021 2020 2019 2018 2017

All Journal Article Presentation Book

[Book] Exploring the Diversity of Plant Alkaloids through a Multiomics Approach. in “Phytopharmaceuticals and Biotechnology of Herbal Plants”2022
- Author(s)
  Megha Rai, Mami Yamazaki
- Total Pages
  386
- Publisher
  CRC Press
- Data Source
  KAKENHI-PLANNED-22H05124
[Journal Article] 甘草のゲノム解読から明らかになった薬効成分の生合成遺伝子クラスター2023
- Author(s)
  Amit Rai, 斉藤和季
- Journal Title
  
  バイオサイエンスとインダストリー
  
  Volume: 81 Pages: 310-311
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19H05652
[Journal Article] Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis2022
- Author(s)
  Rai A, Hirakawa H, Rai M, Shimizu Y, Shirasawa K, Kikuchi S, Seki H, Yamazaki M, Toyoda A, Isobe S, Muranaka T, Saito K
- Journal Title
  
  DNA Res.
  
  Volume: 29 Issue: 6 Pages: 1-14
- DOI
  10.1093/dnares/dsac043
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K19082, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-20H02913
[Journal Article] Chromosome-scale genome assembly of <i>Glycyrrhiza uralensis</i> revealed metabolic gene cluster centred specialized metabolites biosynthesis2022
- Author(s)
  Rai Amit、Hirakawa Hideki、Rai Megha、Shimizu Yohei、Shirasawa Kenta、Kikuchi Shinji、Seki Hikaru、Yamazaki Mami、Toyoda Atsushi、Isobe Sachiko、Muranaka Toshiya、Saito Kazuki
- Journal Title
  
  DNA Research
  
  Volume: 29
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22H05124
[Journal Article] Metabolomics and complementary techniques to investigate the plant phytochemical cosmos2021
- Author(s)
  Tsugawa Hiroshi、Rai Amit、Saito Kazuki、Nakabayashi Ryo
- Journal Title
  
  Natural Product Reports
  
  Volume: 38 Issue: 10 Pages: 1729-1759
- DOI
  10.1039/d1np00014d
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K19155, KAKENHI-PROJECT-18H02432, KAKENHI-PROJECT-21K18216, KAKENHI-PROJECT-19K16391
[Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021
- Author(s)
  Rai Amit、Hirakawa Hideki、Nakabayashi Ryo、Kikuchi Shinji、Hayashi Koki、Rai Megha、Tsugawa Hiroshi、Nakaya Taiki、Mori Tetsuya、Nagasaki Hideki、Fukushi Runa、Kusuya Yoko、Takahashi Hiroki、Uchiyama Hiroshi、Toyoda Atsushi、Hikosaka Shoko、Goto Eiji、Saito Kazuki、Yamazaki Mami
- Journal Title
  
  Nature Communications
  
  Volume: 12 Issue: 1 Pages: 405-405
- DOI
  10.1038/s41467-020-20508-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K19155, KAKENHI-PLANNED-16H06454, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-17K08018, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19K16391
[Journal Article] Gene-Metabolite Network Analysis Revealed Tissue-Specific Accumulation of Therapeutic Metabolites in Mallotus japonicus2021
- Author(s)
  Rai Megha、Rai Amit、Mori Tetsuya、Nakabayashi Ryo、Yamamoto Manami、Nakamura Michimi、Suzuki Hideyuki、Saito Kazuki、Yamazaki Mami
- Journal Title
  
  International Journal of Molecular Sciences
  
  Volume: 22 Issue: 16 Pages: 8835-8835
- DOI
  10.3390/ijms22168835
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-19K16391
[Journal Article] A multi-objective hybrid machine learning approach-based optimization for enhanced biomass and bioactive phycobiliproteins production in Nostoc sp. CCC-4032021
- Author(s)
  Saini Dinesh Kumar、Rai Amit、Devi Alka、Pabbi Sunil、Chhabra Deepak、Chang Jo-Shu、Shukla Pratyoosh
- Journal Title
  
  Bioresource Technology
  
  Volume: 329 Pages: 124908-124908
- DOI
  10.1016/j.biortech.2021.124908
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Journal Article] Multiomics-based characterization of specialized metabolites biosynthesis in Cornus Officinalis2020
- Author(s)
  Rai Amit、Rai Megha、Kamochi Hidetaka、Mori Tetsuya、Nakabayashi Ryo、Nakamura Michimi、Suzuki Hideyuki、Saito Kazuki、Yamazaki Mami
- Journal Title
  
  DNA Research
  
  Volume: 27 Issue: 2 Pages: 1-15
- DOI
  10.1093/dnares/dsaa009
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06454, KAKENHI-PROJECT-19H05652, KAKENHI-PROJECT-19K16391
[Journal Article] A new era in plant functional genomics2019
- Author(s)
  Rai Amit、Yamazaki Mami、Saito Kazuki
- Journal Title
  
  Current Opinion in Systems Biology
  
  Volume: 15 Pages: 58-67
- DOI
  10.1016/j.coisb.2019.03.005
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H02494
[Journal Article] Perspective: functional genomics towards new biotechnology in medicinal plants2018
- Author(s)
  Mami Yamazaki, Amit Rai, Naoko Yoshimoto, Kazuki Saito
- Journal Title
  
  Plant Biotechnology Reports
  
  Volume: 12 Issue: 2 Pages: 69-75
- DOI
  10.1007/s11816-018-0476-9
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17K08332, KAKENHI-PROJECT-15H02494
[Journal Article] Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume2017
- Author(s)
  Keiichi Mochida, Tetsuya Sakurai, Hikaru Seki, Takuhiro Yoshida, Kotaro Takahagi, Satoru Sawai, Hiroshi Uchiyama, Toshiya Muranaka, Kazuki Saito
- Journal Title
  
  The Plant Journal
  
  Volume: 89 Issue: 2 Pages: 181-194
- DOI
  10.1111/tpj.13385
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H02494, KAKENHI-PROJECT-26450123, KAKENHI-PROJECT-15H04485
[Journal Article] Integrated omics analysis of specialized metabolism in medicinal plants2017
- Author(s)
  Rai Amit、Saito Kazuki、Yamazaki Mami
- Journal Title
  
  The Plant Journal
  
  Volume: 90 Issue: 4 Pages: 764-787
- DOI
  10.1111/tpj.13485
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H02494
[Presentation] カンプトテシン生合成に関与する遺伝子クラスター内に存在するトランスポーター遺伝子の機能2022
- Author(s)
  二反田望実, RAI Amit, 齊藤和季, 山崎真巳
- Organizer
  日本植物生理学会年会(Web)
- Data Source
  KAKENHI-PLANNED-22H05124
[Presentation] カンプトテシン生合成解明を目指した統合オミクス科学2021
- Author(s)
  山崎真巳、ライアミット、北村智、齊藤和季
- Organizer
  日本薬学会第141年会（広島）
- Data Source
  KAKENHI-PROJECT-19H05652
[Presentation] Systems approach to explore emergence of specialized metabolites in medicinal plants2021
- Author(s)
  Amit Rai
- Organizer
  National Bioengineering Conference- 2022, India
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Presentation] 薬用植物クララにおける二次代謝産物の生合成機構の解明 Elucidation of biosynthetic mechanism of secondary metabolisms in Sophora flavescens2020
- Author(s)
  清水陽平, Rai Amit, 中村道美, 鈴木秀幸, 斉藤和季, 山崎真巳
- Organizer
  第61回日本植物生理学会年会（大阪）
- Data Source
  KAKENHI-PROJECT-19H05652
[Presentation] Genome Assembly and Characterization of Medicinal Plant Sophora Flavescens2020
- Author(s)
  Amit Rai , Yohei Shimizu , Hideki Hirakawa , Mami Yamazaki, Kazuki Saito
- Organizer
  Plant and Animal Genome Conference XXVIII; San Diego, USA
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H05652
[Presentation] Genome-guided multi-omics approach to explore evolution of specialized metabolites in plants2020
- Author(s)
  Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa Tetsuya Mori, Mami Yamazaki, and Kazuki Saito
- Organizer
  International plant systems biology, EMBO workshop, April 26-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Presentation] Integrated Omics for Hypothesis Generation2020
- Author(s)
  Amit Rai
- Organizer
  The 69th Annual Conference on Mass Spectrometry, Japan, May 19-21
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Presentation] シロイヌナズナへのリジン脱炭酸酵素遺伝子導入による新規代謝経路誘導と化学多様性の拡張2019
- Author(s)
  清水陽平、Amit Rai、佐藤大、鈴木秀幸、斉藤和季、山崎真巳
- Organizer
  日本薬学会第139年会
- Data Source
  KAKENHI-PROJECT-15H02494
[Presentation] Predicting genes related to the biosynthesis of Camptothecin by integrating promoter similarity score with gene co-expression analysis2019
- Author(s)
  Koki Hayashi, Amit Rai, Kazuki Saito, Mami Yamazaki
- Organizer
  The 61th Annual Meeting of the Japanese Society of Plant Physiologists, Osaka
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Presentation] Integration of cis-element motif analysis with co-expression analysis to predict genes related to Camptothecin biosynthesis2019
- Author(s)
  Koki Hayashi, Amit Rai, Kazuki Saito, Mami Yamazaki
- Organizer
  Genome Support Meeting, PAG 2019, Nagoya, Japan
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391
[Presentation] シス調節配列のモチーフ解析と共発現解析の統合によるカンプトテシン生合成候補遺伝子の探索2019
- Author(s)
  Koki Hayashi, Amit Rai, Kazuki Saito, Mami Yamazaki
- Organizer
  The 56th Plant Chemistry Symposium
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16391

1. 山崎真巳 (70222370)

# of Collaborated Projects: 4 results

# of Collaborated Products: 11 results
2. Saito Kazuki (00146705)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. 中林亮 (30586160)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
4. 高上馬希重 (80342781)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
5. 東泰弘 (90634577)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. 吉本尚子 (10415333)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
7. 村中俊哉 (60342862)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
8. 鈴木秀幸 (80276162)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
9. 関光 (30392004)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
10. 庄司翼 (40343272)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 榊原圭子 (20360555)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. TAKAHASHI hiroki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. SAKURAI tetsuya

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
14. MOCHIDA keiichi

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
15. HIRAKAWA hideki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. SEKI hikaru

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
17. 津川裕司

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
18. 斉藤和季

# of Collaborated Projects: 0 results

# of Collaborated Products: 9 results

Rai Amit Rai Amit

ライ アミット ライ アミット

Research Projects

Research Products

Co-Researchers

ゲノム－メタボロームに基づく複雑系生合成パスウェイの予測とエンジニアリング

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

国内産の重要薬用資源植物の統合ゲノム科学

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Systems biology approach to unravel biosynthesis and evolution of camptothecin, a potent anti-cancer natural productPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genomic origin of chemodiversity in medicinal plants

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Integrated genomics on important medicinal plants in Leguminosae

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Exploring the Diversity of Plant Alkaloids through a Multiomics Approach. in “Phytopharmaceuticals and Biotechnology of Herbal Plants”2022

Author(s)

Total Pages

Publisher

Data Source

[Journal Article] 甘草のゲノム解読から明らかになった薬効成分の生合成遺伝子クラスター2023

Author(s)

Journal Title

Data Source

[Journal Article] Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis2022

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chromosome-scale genome assembly of <i>Glycyrrhiza uralensis</i> revealed metabolic gene cluster centred specialized metabolites biosynthesis2022

Author(s)

Journal Title

Data Source

[Journal Article] Metabolomics and complementary techniques to investigate the plant phytochemical cosmos2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Gene-Metabolite Network Analysis Revealed Tissue-Specific Accumulation of Therapeutic Metabolites in Mallotus japonicus2021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A multi-objective hybrid machine learning approach-based optimization for enhanced biomass and bioactive phycobiliproteins production in Nostoc sp. CCC-4032021

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Multiomics-based characterization of specialized metabolites biosynthesis in Cornus Officinalis2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A new era in plant functional genomics2019

Author(s)

ライアミットライアミット

[Presentation] シス調節配列のモチーフ解析と共発現解析の統合によるカンプトテシン生合成候補遺伝子の探索2019