NAKABAYASHI Ryo 中林亮

Researcher Number	30586160
Other IDs
Affiliation (based on the past Project Information) *help	2017 – 2020: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 2016: 理化学研究所, 環境資源科学研究センター, 研究員 2014: 独立行政法人理化学研究所, 環境資源科学研究センター, 特別研究員 2010: 独立行政法人理化学研究所, 植物科学研究センター, 特別研究員
Review Section/Research Field	Except Principal Investigator Living organism molecular science / Science and Engineering / Horticultural science / Biomolecular chemistry / Medium-sized Section 47:Pharmaceutical sciences and related fields / Broad Section H / Basic Section 43060:System genome science-related
Keywords	Except Principal Investigator メタボロミクス / 薬用植物 / メタボローム解析 / メタボローム / トランスクリプトミクス / 生合成 / アルカロイド / 統合オミクス / 質量分析 / インフォマティクス … More

国内産の重要薬用資源植物の統合ゲノム科学Ongoing
- Principal Investigator
  
  齊藤和季
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 47:Pharmaceutical sciences and related fields
- Research Institution
  Institute of Physical and Chemical Research
Genomic origin of chemodiversity in medicinal plantsOngoing
- Principal Investigator
  
  齊藤和季
- Project Period (FY)
  2019 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Review Section
  
  Broad Section H
- Research Institution
  Institute of Physical and Chemical Research
Illuminating new biological mechanisms by multiomics approach with mass spectrometry cheminformaticsOngoing
- Principal Investigator
  
  津川裕司
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43060:System genome science-related
- Research Institution
  Institute of Physical and Chemical Research
Development of next generation untaregeted metabolomics methodologies using LC-MS/MS
- Principal Investigator
  
  Tsugawa Hiroshi
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biomolecular chemistry
- Research Institution
  Institute of Physical and Chemical Research
Application of integrated omics analyses by using Allium bio-resources to onion breeding
- Principal Investigator
  
  Masayoshi Shigyo
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Horticultural science
- Research Institution
  Yamaguchi University
Metabolomics-assisted genome mining for biosynthesis of plant metabolites
- Principal Investigator
  
  SAITO Kazuki
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Chiba University
Phytochemical genomics : Genomic basis for phytochemical diversity
- Principal Investigator
  
  SAITO Kazuki
- Project Period (FY)
  2007 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Living organism molecular science
- Research Institution
  Chiba University

All 2020 2019 2016 2015 2014 2013 2012 2010 2009 2008 Other

All Journal Article Presentation

[Journal Article] Metabolomics with 15N Labeling for Characterizing Missing Monoterpene Indole Alkaloids in Plants2020
- Author(s)
  Nakabayashi Ryo、Mori Tetsuya、Takeda Noriko、Toyooka Kiminori、Sudo Hiroshi、Tsugawa Hiroshi、Saito Kazuki
- Journal Title
  
  Analytical Chemistry
  
  Volume: 92 Pages: 5670-5675
- DOI
  10.1021/acs.analchem.9b03860
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19155, KAKENHI-PROJECT-18H02432, KAKENHI-PROJECT-17K07477
[Journal Article] A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.2019
- Author(s)
  Tsugawa Hiroshi、Nakabayashi Ryo、Mori Tetsuya、Yamada Yutaka、Takahashi Mikiko、Rai Amit、Sugiyama Ryosuke、Yamamoto Hiroyuki、Nakaya Taiki、Yamazaki Mami、Kooke Rik、Bac-Molenaar Johanna A.、Oztolan-Erol Nihal、Keurentjes Joost J. B.、Arita Masanori、Saito Kazuki
- Journal Title
  
  Nat Methods
  
  Volume: 16 Pages: 295-298
- DOI
  10.1038/s41592-019-0358-2
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14348, KAKENHI-ORGANIZER-15H05897, KAKENHI-PLANNED-15H05898, KAKENHI-PROJECT-18K19155, KAKENHI-INTERNATIONAL-15K21738, KAKENHI-PLANNED-16H06454, KAKENHI-PROJECT-18H02432, KAKENHI-PROJECT-17H03621
[Journal Article] Hydrogen rearrangement rules: computational MS/MS fragmentation and structure elucidation using MS-FINDER software2016
- Author(s)
  Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M
- Journal Title
  
  Analytical Chemistry
  
  Volume: 88 Pages: 7946-7958
- DOI
  10.1021/acs.analchem.6b00770
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-15H05897, KAKENHI-PLANNED-15H05898, KAKENHI-PROJECT-15K01812
[Journal Article] Revisiting anabasine biosynthesis in tobacco hairy roots expressing plant lysine decarboxylase gene by using <sup>15</sup>N-labeled lysine2015
- Author(s)
  Somnuk Bunsupa, Kana Komastsu, Ryo Nakabayashi, Kazuki Saito, and Mami Yamazaki
- Journal Title
  
  Plant Biotechnology
  
  Volume: 31 Issue: 5 Pages: 511-518
- DOI
  10.5511/plantbiotechnology.14.1008a
- NAID
  130004721174
- ISSN
  1342-4580, 1347-6114
- Year and Date
  2015-02-27
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22108008, KAKENHI-PROJECT-24570041
[Journal Article] Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids2014
- Author(s)
  R. Nakabayashi, K. Yonekura-Sakakibara, K. Urano, M. Suzuki, Y. Yamada, T. Nishizawa, F. Matsuda, M. Kojima, H. Sakakibara, K. Shinozaki, A. J. Michael, T. Tohge, M. Yamazaki, and K. Saito
- Journal Title
  
  Plant J.
  
  Volume: 77 Pages: 367-379
- DOI
  10.1111/tpj.12388
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22108001, KAKENHI-PLANNED-22108008
[Journal Article] A flavonoid 3-O-glucoside: 2”-O-glucosyltransferase responsible for terminal modification of pollen- specific flavonols in Arabidopsis thaliana2014
- Author(s)
  Keiko Yonekura-Sakakibara, Ryo Nakabayashi, Satoko Sugawara, Takayuki Tohge, Takuya Ito, Misuzu Koyanagi, Mariko Kitajima, Hiromitsu Takayama, and Kazuki Saito
- Journal Title
  
  Plant Journal
  
  Volume: 79 Pages: 769-782
- DOI
  10.1111/tpj.12580
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22108008, KAKENHI-PROJECT-25440148
[Journal Article] The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity2013
- Author(s)
  Kazuki Saito, Keiko Yonekura-Sakakibara, Ryo Nakabayashi, Yasuhiro Higashi, Mami Yamazaki, Takayuki Tohge, Alisdair R. Fernie
- Journal Title
  
  Plant Physiology and Biochemistry
  
  Volume: 72 Pages: 21-34
- DOI
  10.1016/j.plaphy.2013.02.001
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008, KAKENHI-PROJECT-25440148
[Journal Article] Coupling Deep Transcriptome Analysis with Untargeted Metabolic Profiling in Ophiorrhiza pumila to Further the Understanding of the Biosynthesis of the Anti-Cancer Alkaloid Camptothecin and Anthraquinones2013
- Author(s)
  Mami Yamazaki, Keiichi Mochida, Takashi Asano, Ryo Nakabayashi, Motoaki Chiba, Udomson Nirin, Yasuyo Yamazaki, Dayan B. Goodenowe, Ushio Sankawa, Takuhiro Yoshida, Atsushi Toyoda, Yasushi Totoki, Yoshiyuki Sakaki, Elsa Góngora-Castill, C. Robin Buell, Tetsuya Sakurai and Kazuki Saito
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: 54 Pages: 686-696
- DOI
  10.1093/pcp/pct040
- NAID
  10031177048
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008, KAKENHI-PROJECT-24570041
[Journal Article] Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana2012
- Author(s)
  Keiko Yonekura-Sakakibara, Atsushi Fukushima, Ryo Nakabayashi, Kousuke Hanada, Fumio Matsuda, Satoko Sugawara, Eri Inoue, Takashi Kuromori, Takuya Ito, Kazuo Shinozaki, Bunyapa Wangwattana, Mami Yamazaki, Kazuki Saito.
- Journal Title
  
  Plant J.
  
  Volume: 69 Pages: 154-167
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008
[Journal Article] A polyhedral approach including natural products chemistry for understanding flavonoid biosynthesis in Arabidopsis2010
- Author(s)
  Ryo Nakabayashi, Mami Yamazaki, Kazuki Saito
- Journal Title
  
  New Biotechnology
  
  Volume: 27 Pages: 829-836
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008
[Journal Article] A polyhedral approach including natural products chemistry for understanding flavonoid biosynthesis in Arabidopsis.2010
- Author(s)
  Ryo Nakabayashi, Mami Yamazaki, Kazuki Saito
- Journal Title
  
  New Biotechnology 27
  
  Pages: 829-836
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] A polyhedral approach including natural products chemistry for understanding flavonoid biosynthesis in Arabidopsis.2010
- Author(s)
  Ryo Nakabayashi, Mami Yamazaki, Kazuki Saito
- Journal Title
  
  New Biotechnology
  
  Volume: 27 Pages: 829-836
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] Metabolomics-oriented isolation and structure elucidation of 37 compounds including two new anthocyanins from Arabidopsis thaliana.2009
- Author(s)
  Ryo Nakabayashi, Miyako Kusano, Makoto Kobayashi, Takayuki Tohge, Keiko Yonekura-Sakakibara, Noriyuki Kogure, Mami Yamazaki, Mariko Kitajima, Kazuki Saito, Hiromitsu Takayama
- Journal Title
  
  Phytochemistry 70
  
  Pages: 1017-1029
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] Metabolomics-oriented isolation and structure elucidation of 37 compounds including two new anthocyanins from Arabidopsis thaliana.2009
- Author(s)
  Ryo Nakabayashi, Miyako Kusano, Makoto Kobayashi, Takayuki Tohge, Keiko Yonekura-Sakakibara, Noriyuki Kogure, Mami Yamazaki, Mariko Kitajima, Kazuki Saito, Hiromitsu Takayama
- Journal Title
  
  Phytochemistry
  
  Volume: 70 Pages: 1017-1029
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] Metabolomics-oriented isolation and structure elucidation of 37 compounds including two new anthocyanins from Arabidopsis thaliana2009
- Author(s)
  Ryo Nakabayashi, Miyako Kusano, Makoto Kobayashi, Takayuki Tohge, Keiko Yonekura-Sakakibara, Noriyuki Kogure, Mami Yamazaki, Mariko Kitajima, Kazuki Saito, Hiromitsu Takayama
- Journal Title
  
  Phytochemistry 70
  
  Pages: 1017-1029
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlation in Arabidopsis2008
- Author(s)
  Keiko Yonekura-Sakakibara, Takayuki Tohge, Fumio Matsuda, Ryo Nakabayashi, Hiromitsu Takayama, Rie Niida, Akiko Watanabe-Takahashi, Eri Inoue, Kazuki Saito
- Journal Title
  
  The Plant Cell 20
  
  Pages: 2160-2176
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Journal Article] Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlation in Arabidopsis.2008
- Author(s)
  Keiko Yonekura-Sakakibara, Takayuki Tohge, Fumio Matsuda, Ryo Nakabayashi, Hiromitsu Takayama, Rie Niida, Akiko Watanabe-Takahashi, Eri Inoue, Kazuki Saito
- Journal Title
  
  Plant Cell 20
  
  Pages: 2160-2176
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19201043
[Presentation] シロイヌナズナにおける二つのMYB遺伝子同時過剰発現による遺伝子発現及びフラボノイド蓄積への効果2009
- Author(s)
  中林亮,榊原圭子,松田史生,峠隆之,北島満里子,高山廣光,山崎真巳,斉藤和季
- Organizer
  第4回メタボロームシンポジウム
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-19201043
[Presentation] 二つのMYB遺伝子の同時過剰発現体におけるトランスクリプトームとフラボノイドプロファイル2008
- Author(s)
  中林亮,榊原圭子,松田史生,北島満里子,高山廣光,山崎真巳,斉藤和季
- Organizer
  第26回日本植物細胞分子生物学会大阪大会・シンポジウム
- Place of Presentation
  大阪
- Data Source
  KAKENHI-PROJECT-19201043
[Presentation] Flavonoid profiling and transcriptome in Arabidopsis overexpressing two MYB genes.2008
- Author(s)
  R.Nakabayashi, K.Yonekura-Sakakibara, F.Matsuda, T.Tohge, M.Kitajima, H.Takayama, M.Yamazaki, K.Saito
- Organizer
  5^<th> International Conference on Plant Metabolomics.
- Place of Presentation
  Yokohama, Japan
- Data Source
  KAKENHI-PROJECT-19201043
[Presentation] Flavonoid profiling and transcriptome in Arabidopsis overexpressing two MYB genes2008
- Author(s)
  R.Nakabayashi, K.Yonekura-Sakakibara, F.Matsuda, T.Tohge, M.Kitajima, H.Takayama, M.Yamazaki, K.Saito
- Organizer
  5^<th> International Conference on Plant Metabolomics
- Place of Presentation
  Yokohama, Japan
- Data Source
  KAKENHI-PROJECT-19201043
[Presentation] ニンニクの含硫二次代謝物アリインの生合成に関わるS酸化酵素遺伝子AsFM01の機能解析
- Author(s)
  小沼美沙都，吉本尚子，水野新也，中林亮，今井真介，角愼一郎，恒吉唯充，斉藤和季
- Organizer
  日本生薬学会第61回年会
- Place of Presentation
  福岡大学 (福岡)
- Year and Date
  2014-09-13 – 2014-09-14
- Data Source
  KAKENHI-PLANNED-22108008
[Presentation] ネギ属の代謝育種を目指した統合メタボローム解析
- Author(s)
  澤田有司・中林亮・執行正義・佐藤修正・若生忠幸・佐藤心郎・山田豊・森哲哉・坂田あかね・斉藤和季・平井優美
- Organizer
  園芸学会平成26年度秋季大会
- Place of Presentation
  佐賀大学
- Year and Date
  2014-09-27 – 2014-09-28
- Data Source
  KAKENHI-PROJECT-26292020
[Presentation] Functional characterization of de-glutamylating and s-oxygenating enzymes for the alliin biosynthesis in garlic.
- Author(s)
  Yoshimoto Naoko, Yabe Ayami, Onuma Misato, Sugino Yuka, Nakabayashi Ryo, Ueyama Masae, Kamata Yasuhiro, Imai Shinsuke, Sumi Shin-ichiro, Tsuneyoshi Tadamitsu, Saito Kazuki
- Organizer
  9th International Workshop, Sulfur Metabolism in Plants. Molecular Physiology and Ecophysiology of Sulfur
- Place of Presentation
  Freiburg (Germany)
- Year and Date
  2014-04-14 – 2014-04-17
- Data Source
  KAKENHI-PLANNED-22108008

1. SAITO Kazuki (00146705)

# of Collaborated Projects: 5 results

# of Collaborated Products: 21 results
2. YAMAZAKI Mami (70222370)

# of Collaborated Projects: 4 results

# of Collaborated Products: 16 results
3. YOSHIMOTO Naoko (10415333)

# of Collaborated Projects: 3 results

# of Collaborated Products: 2 results
4. KUSANO MIYAKO (60415148)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
5. SAKAKIBARA Keiko (20360555)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
6. Tsugawa Hiroshi (30647235)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
7. 東泰弘 (90634577)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
8. ライアミット (60760535)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
9. 高上馬希重 (80342781)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
10. NOJI Masaaki (80271534)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. TAKAYAMA Hiromitsu (90171561)

# of Collaborated Projects: 1 results

# of Collaborated Products: 9 results
12. KANAYA Shigehiko (90224584)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. AOKI Toshio (80287606)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. FUKUSHIMA Atsushi (80415281)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
15. Masayoshi Shigyo (40314827)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
16. HIRAKAWA Hideki (80372746)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. ARITA Masanori (10356389)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
18. ARITA Makoto (80292952)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
19. IKEDA Kazutaka (10466732)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 澤田有司 (00415176)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
21. 伊藤真一 (30243629)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 佐藤修正 (70370921)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
23. 若生忠幸 (70414670)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
24. FIEHN Oliver

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
25. LAI Zijuan

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. KIND Tobias

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
27. CAJKA Tomas

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
28. WOHLGEMUTH Gert

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. MEHTA Sajjan

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
30. MUELLER Matthew

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
31. 杉山龍介

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
32. 豊岡公徳

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

NAKABAYASHI Ryo 中林 亮

Research Projects

Research Products

Co-Researchers

国内産の重要薬用資源植物の統合ゲノム科学Ongoing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Genomic origin of chemodiversity in medicinal plantsOngoing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Illuminating new biological mechanisms by multiomics approach with mass spectrometry cheminformaticsOngoing

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Development of next generation untaregeted metabolomics methodologies using LC-MS/MS

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Application of integrated omics analyses by using Allium bio-resources to onion breeding

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Metabolomics-assisted genome mining for biosynthesis of plant metabolites

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Phytochemical genomics : Genomic basis for phytochemical diversity

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] Metabolomics with 15N Labeling for Characterizing Missing Monoterpene Indole Alkaloids in Plants2020

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms.2019

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Hydrogen rearrangement rules: computational MS/MS fragmentation and structure elucidation using MS-FINDER software2016

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Revisiting anabasine biosynthesis in tobacco hairy roots expressing plant lysine decarboxylase gene by using <sup>15</sup>N-labeled lysine2015

Author(s)

Journal Title

DOI

NAID

ISSN

Year and Date

Language

Data Source

[Journal Article] Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] A flavonoid 3-O-glucoside: 2”-O-glucosyltransferase responsible for terminal modification of pollen- specific flavonols in Arabidopsis thaliana2014

Author(s)

Journal Title

DOI

Data Source

NAKABAYASHI Ryo 中林亮