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SHINODA WATARU  篠田 渉

… Alternative Names

SHINODA Wataru  篠田 渉

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Researcher Number 70357193
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-3388-9227
Affiliation (Current) 2025: 岡山大学, 先鋭研究領域, 教授
Affiliation (based on the past Project Information) *help 2021 – 2025: 岡山大学, 異分野基礎科学研究所, 教授
2016 – 2021: 名古屋大学, 工学研究科, 准教授
2015: 名古屋大学, 大学院工学研究科, 准教授
2013 – 2014: 名古屋大学, 工学(系)研究科(研究院), 准教授
2012: 独立行政法人産業技術総合研究所, 健康工学研究部門, 主任研究員
2011: 独立行政法人産業技術総合研究所, ナノシステム研究部門, 研究グループ長
Review Section/Research Field
Principal Investigator
Basic Section 32010:Fundamental physical chemistry-related / Transformative Research Areas, Section (II) / Physical chemistry
Except Principal Investigator
Medium-sized Section 37:Biomolecular chemistry and related fields / Broad Section D / Transformative Research Areas, Section (II) / Biomolecular chemistry / Mathematical physics/Fundamental condensed matter physics
Keywords
Principal Investigator
分子シミュレーション / 分子動力学シミュレーション / 膜融合 / 自由エネルギー解析 / 粗視化力場 / 粗視化分子動力学シミュレーション / 粗視化 / エンドソーム脱出 / 脂質ナノ粒子 / ペプチド … More / 核酸医薬 / 膜透過 / 膜モジュレータ / 脂質混合効果 / ベシクル間相互作用 / 膜弾性 / ストレス / ストーク / 生物物理 / 生体膜融合 / 粗視化モデル / 自由エネルギー … More
Except Principal Investigator
脂質二重膜 / 平均配向 / 固体NMR / 立体配座 / 脂肪鎖 / ウイルス様脂質ナノ粒子 / 人工エクソソーム / マイクロ流体デバイス / 脂質粒子 / 核酸医薬 / ペプチド / 分子マシン / 細胞膜透過 / 膜モジュレータ / 動的配座 / 古細菌脂質 / ドメイン構造 / スフィンゴミエリン / 脂質ラフト / イオンチャネル / 計算手法、プログラム開発 / 計算物理 / 生物物理 / 第一原理分子動力学 / プログラム開発 / 大規模第一原理計算 Less
  • Research Projects

    (9 results)
  • Research Products

    (83 results)
  • Co-Researchers

    (20 People)
  •  生体膜の非対称性と不均一性が引き起こす物質輸送制御の分子機構の探求Principal Investigator

    • Principal Investigator
      篠田 渉
    • Project Period (FY)
      2025 – 2027
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 32010:Fundamental physical chemistry-related
    • Research Institution
      Okayama University
  •  細胞膜をゆらす核酸医薬の膜透過機構の総合理解と膜透過学の創成

    • Principal Investigator
      大澤 昂志
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Transformative Research Areas (B)
    • Review Section
      Transformative Research Areas, Section (II)
    • Research Institution
      Osaka University
  •  Computational Science of Membrane Permeation: Elucidation of Membrane Modulator Action and Nucleic Acid Permeation MechanismPrincipal Investigator

    • Principal Investigator
      篠田 渉
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Transformative Research Areas (B)
    • Review Section
      Transformative Research Areas, Section (II)
    • Research Institution
      Okayama University
  •  Development of Applications of Engineered Lipid Particles

    • Principal Investigator
      渡慶次 学
    • Project Period (FY)
      2024 – 2028
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Review Section
      Broad Section D
    • Research Institution
      Hokkaido University
  •  Average orientation of lipid acyl chains in the domain structure of model membranes

    • Principal Investigator
      村田 道雄
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Challenging Research (Pioneering)
    • Review Section
      Medium-sized Section 37:Biomolecular chemistry and related fields
    • Research Institution
      Osaka University
  •  Molecular Dynamics of Intracellular Transport of Lipid Nanoparticles: Molecular Mechanism of Nucleic Acid Endosomal EscapePrincipal Investigator

    • Principal Investigator
      篠田 渉
    • Project Period (FY)
      2021 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 32010:Fundamental physical chemistry-related
    • Research Institution
      Okayama University
  •  Dynamic conformation and domain structure of lipid molecules in model biomembranes

    • Principal Investigator
      MURATA Michio
    • Project Period (FY)
      2016 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Research Field
      Biomolecular chemistry
    • Research Institution
      Osaka University
  •  Environment-dependent force fields for complex biological systems based on very large-scale first-principles calculations

    • Principal Investigator
      Miyazaki Tsuyoshi
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Mathematical physics/Fundamental condensed matter physics
    • Research Institution
      National Institute for Materials Science
  •  Multiscale Molecular Modeling of Membrane FusionPrincipal Investigator

    • Principal Investigator
      SHINODA Wataru
    • Project Period (FY)
      2011 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Physical chemistry
    • Research Institution
      Nagoya University
      National Institute of Advanced Industrial Science and Technology

All 2024 2023 2022 2021 2020 2019 2018 2015 2014 2013 2012 2011 Other

All Journal Article Presentation

  • [Journal Article] Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations2024

    • Author(s)
      Maeki Masatoshi、Kimura Niko、Okada Yuto、Shimizu Kazuki、Shibata Kana、Miyazaki Yusuke、Ishida Akihiko、Yonezawa Kento、Shimizu Nobutaka、Shinoda Wataru、Tokeshi Manabu
    • Journal Title

      Nanoscale Advances

      Volume: ー Issue: 8 Pages: 2166-2176

    • DOI

      10.1039/d3na01073b

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-19H05781, KAKENHI-PUBLICLY-23H04049, KAKENHI-PROJECT-23K21096, KAKENHI-PROJECT-23K28408
  • [Journal Article] Self-Assembly of Glycerol-Amphiphilic Janus Dendrimers Amplifies and Indicates Principles for the Selection of Stereochemistry by Biological Membranes2023

    • Author(s)
      Zhang Dapeng、Xiao Qi、Rahimzadeh Mehrnoush、Liu Matthew、Rodriguez-Emmenegger Cesar、Miyazaki Yusuke、Shinoda Wataru、Percec Virgil
    • Journal Title

      Journal of the American Chemical Society

      Volume: 145 Issue: 7 Pages: 4311-4323

    • DOI

      10.1021/jacs.3c00389

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Journal Article] pSPICA Force Field Extended for Proteins and Peptides2023

    • Author(s)
      Miyazaki Yusuke、Shinoda Wataru
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 64 Issue: 2 Pages: 532-542

    • DOI

      10.1021/acs.jcim.3c01611

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Journal Article] Improved Protein Model in SPICA Force Field2023

    • Author(s)
      Yamada Teppei、Miyazaki Yusuke、Harada Shogo、Kumar Ashutosh、Vanni Stefano、Shinoda Wataru
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 19 Issue: 23 Pages: 8967-8977

    • DOI

      10.1021/acs.jctc.3c01016

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Journal Article] Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study2022

    • Author(s)
      Miyazaki Yusuke、Shinoda Wataru
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Biomembranes

      Volume: 1864 Issue: 9 Pages: 183955-183955

    • DOI

      10.1016/j.bbamem.2022.183955

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Journal Article] SPICA Force Field for Proteins and Peptides2022

    • Author(s)
      Kawamoto Shuhei、Liu Huihui、Miyazaki Yusuke、Seo Sangjae、Dixit Mayank、DeVane Russell、MacDermaid Christopher、Fiorin Giacomo、Klein Michael L.、Shinoda Wataru
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 18 Issue: 5 Pages: 3204-3217

    • DOI

      10.1021/acs.jctc.1c01207

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Journal Article] Conformation and Orientation of Branched Acyl Chains Responsible for the Physical Stability of Diphytanoylphosphatidylcholine.2020

    • Author(s)
      Hiroshi Tsuchikawa, Takuya Ono, Masaki Yamagami, Yuichi Umegawa, Wataru Shinoda, Michio Murata
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 40 Pages: 3929-3938

    • DOI

      10.1021/acs.biochem.0c00589

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-20K05730, KAKENHI-PLANNED-17H06406, KAKENHI-PROJECT-16H06315
  • [Journal Article] Average Conformation of Branched Chain Lipid PGP-Me That Accounts for the Thermal Stability and High-Salinity Resistance of Archaeal Membranes.2019

    • Author(s)
      Yamagami, M., Tsuchikawa, H., Cui, J., Umegawa, Y., Miyazaki, Y., Seo, S., Shinoda, W., Murata, M.
    • Journal Title

      Biochemistry

      Volume: 58 Issue: 37 Pages: 3869-3879

    • DOI

      10.1021/acs.biochem.9b00469

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-17H06406, KAKENHI-PROJECT-16H06315
  • [Journal Article] SPICA Force Field for Lipid Membranes: Domain Formation Induced by Cholesterol.2019

    • Author(s)
      Seo, S., Shinoda, W.
    • Journal Title

      J. Chem. Theory Comput.

      Volume: 15 Issue: 1 Pages: 762-774

    • DOI

      10.1021/acs.jctc.8b00987

    • NAID

      120006623810

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Journal Article] Cholesterol-Induced Conformational Change in the Sphingomyelin Headgroup2019

    • Author(s)
      Hanashima Shinya、Murakami Kazuhiro、Yura Michihiro、Yano Yo、Umegawa Yuichi、Tsuchikawa Hiroshi、Matsumori Nobuaki、Seo Sangjae、Shinoda Wataru、Murata Michio
    • Journal Title

      Biophysical Journal

      Volume: 117 Issue: 2 Pages: 307-318

    • DOI

      10.1016/j.bpj.2019.06.019

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19K05713, KAKENHI-PROJECT-16H06315, KAKENHI-PROJECT-18K19149
  • [Journal Article] Amphotericin B-Ergosterol Complex Spans a Lipid Bilayer as a Single-Length Assembly.2019

    • Author(s)
      Tomoya Yamamoto, Yuichi Umegawa, Hiroshi Tsuchikawa, Shinya Hanashima, Nobuaki Matsumori, Kosuke Funahashi, Sangjae Seo, Wataru Shinoda, Michio Murata.
    • Journal Title

      Biochemistry

      Volume: 58 Issue: 51 Pages: 5188-5196

    • DOI

      10.1021/acs.biochem.9b00835

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16H06315, KAKENHI-PROJECT-18K19149
  • [Journal Article] Precise Calculation of the Local Pressure Tensor in Cartesian and Spherical Coordinates in LAMMPS2015

    • Author(s)
      中村壮伸、川本周平、篠田 渉
    • Journal Title

      Computer Physics Communications

      Volume: 190 Pages: 120-128

    • DOI

      10.1016/j.cpc.2014.11.017

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Free energy analysis along the stalk mechanism of membrane fusion2014

    • Author(s)
      川本周平、篠田 渉
    • Journal Title

      Soft Matter

      Volume: 10 Issue: 17 Pages: 3048-3054

    • DOI

      10.1039/c3sm52344f

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] 脂質膜透過現象の分子シミュレーションによる研究2014

    • Author(s)
      篠田 渉
    • Journal Title

      膜(MEMBRANE)

      Volume: 39 Pages: 372-378

    • NAID

      130005069452

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Effective interaction between small unilamellar vesicles as probed by coarse-grained molecular dynamics simulations2014

    • Author(s)
      篠田 渉、Michael L Klein
    • Journal Title

      Pure and Applied Chemistry

      Volume: 86 Issue: 2 Pages: 215-222

    • DOI

      10.1515/pac-2014-5023

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Probing the structure of PEGylated-lipid assemblies by coarse-grained molecular dynamics2013

    • Author(s)
      篠田 渉、Dennis E. Discher、Michael L. Klein、Sharon M. Loverde
    • Journal Title

      Soft Matter

      Volume: 9 Issue: 48 Pages: 11549-11556

    • DOI

      10.1039/c3sm52290c

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] A guiding potential method for evaluating the bending rigidity of tensionless lipid membranes from molecular simulation2013

    • Author(s)
      川本周平、中村壮伸、Steven O. Nilesen、篠田 渉
    • Journal Title

      Journal of Chemical Physics

      Volume: 139 Issue: 3

    • DOI

      10.1063/1.4811677

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Method of evaluating curvature-dependent elastic parameters for small unilamellar vesicles using molecular dynamics trajectory2013

    • Author(s)
      中村壮伸、篠田 渉
    • Journal Title

      Journal of Chemical Physics

      Volume: 138 Issue: 12

    • DOI

      10.1063/1.4795579

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] 脂質膜の粗視化分子シミュレーション2013

    • Author(s)
      篠田 渉
    • Journal Title

      Colloid & Interface Communication

      Volume: 12 Pages: 55-61

    • NAID

      40020187316

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Computer simulation studies of self-assembling macromolecules2012

    • Author(s)
      篠田 渉、Russell DeVane、Michael L Klein
    • Journal Title

      Current Opinions in Structural Biology

      Volume: 22 Issue: 2 Pages: 175-186

    • DOI

      10.1016/j.sbi.2012.01.011

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Cholesterol Effect on Water Permeability through DPPC and PSM Lipid Bilayers : A Molecular Dynamics Study2011

    • Author(s)
      斎藤大明、篠田渉
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 115 Issue: 51 Pages: 15241-15250

    • DOI

      10.1021/jp201611p

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014, KAKENHI-PROJECT-23750008
  • [Journal Article] Novel numerical method for calculating the pressure tensor in spherical coordinates for molecular systems2011

    • Author(s)
      中村壮伸、篠田渉、池庄司民夫
    • Journal Title

      Journal of Chemical Physics

      Volume: 135 Issue: 9

    • DOI

      10.1063/1.3626410

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Journal Article] Free energy analysis of vesicle-to-bicelle transformation2011

    • Author(s)
      篠田渉、中村壮伸、Steven O.Nielsen
    • Journal Title

      Soft Matter

      Volume: 7 Issue: 19 Pages: 9012-9020

    • DOI

      10.1039/c1sm05404j

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 濃厚電解液中のLiイオン伝導機構2023

    • Author(s)
      篠田 渉
    • Organizer
      分子研研究会「イオン液体インフォマティクスの発展にむけて」
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Coarse-Grained Molecular Dynamics Study on Endosomal Escape of Lipid Nanoparticles using SPICA Force Field2023

    • Author(s)
      篠田 渉
    • Organizer
      CECAM workshop "Macromolecular complexes: from ab initio and integrative modelling to functional dynamics"
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 脂質ナノ粒子のエンドソーム脱出の分子機構:分子シミュレーションによるアプローチ2023

    • Author(s)
      篠田 渉
    • Organizer
      第454回 CBI学会研究講演会
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Exploring the Mechanism of Endosomal Escape of Lipid Nanoparticles: A Coarse-Grained Molecular Dynamics Study2023

    • Author(s)
      Wataru Shinoda
    • Organizer
      The 10th edition of the conference of the Asia Pacific Association of Theoretical and Computational Chemistry (APATCC-10)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子シミュレーションによる脂質ナノ粒子の構造解析とエンドソーム脱出機構の解明2023

    • Author(s)
      篠田 渉
    • Organizer
      第58回薬剤学懇談会研究討論会
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Selective action of antimicrobial peptides on lipid membranes: Coarse-grained molecular dynamics study2023

    • Author(s)
      篠田 渉
    • Organizer
      第61回日本生物物理学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Coarse-grained molecular dynamics of lipid self-assembly2022

    • Author(s)
      Wataru Shinoda
    • Organizer
      CECAM workshop: IONS, MEMBRANE AND CHANNELS: MULTISCALE SIMULATIONS FROM QUANTUM TO COARSE-GRAIN. A SYMPOSIUM IN HONOR OF MICHAEL L. KLEIN, FRS
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 脂質ナノ粒子を用いた核酸エンドソーム脱出の分子動力学2022

    • Author(s)
      柴田 果奈,Akhil Pratap Singh,宮崎 裕介,篠田 渉
    • Organizer
      第44回溶液化学シンポジウム
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子動力学計算による抗菌ペプチドの膜選択性解析2022

    • Author(s)
      川端 一正,宮崎 裕介,篠田 渉
    • Organizer
      第44回溶液化学シンポジウム
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子動力学シミュレーションによるエンドソーム脱出分子機構の解明2022

    • Author(s)
      柴田 果奈, Akhil Pratap Singh, 篠田 渉
    • Organizer
      第60回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 固体NMRによる脂質二重膜におけるリン脂質不飽和脂肪鎖の配座・配向解析2022

    • Author(s)
      安田 貴也、梅川 雄一、篠田 渉、村田 道雄
    • Organizer
      日本化学会第102春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] 生体膜・脂質膜の分子シミュレーション2022

    • Author(s)
      篠田 渉
    • Organizer
      高分子計算機科学研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子動力学シミュレーションを用いた脂質膜におけるメリチンの抗菌作用の研究2022

    • Author(s)
      宮崎 裕介, 篠田 渉
    • Organizer
      第60回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 環境変化によるタンパク質の構造変化を取り込んだ粗視化タンパク質モデル2022

    • Author(s)
      山田 哲平, 篠田 渉
    • Organizer
      第60回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 環境依存の構造変化を取り入れた粗視化タンパク質モデルの開発2022

    • Author(s)
      山田 哲平, 篠田 渉
    • Organizer
      第16回分子科学会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 粗視化分子力場SPICAのタンパク質系への拡張と応用2022

    • Author(s)
      宮崎 裕介, 篠田 渉
    • Organizer
      第16回分子科学会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 環境依存の構造変化を取り込んだ粗視化タンパク質モデルの開発と脂質膜吸着現象への応用2022

    • Author(s)
      山田 哲平, 篠田 渉
    • Organizer
      第36回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子動力学計算による脂質ナノ粒子を用いた核酸エンドソーム脱出機構の解明2022

    • Author(s)
      柴田 果奈, Akhil Pratap Singh, 宮崎 裕介, 篠田 渉
    • Organizer
      第36回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 抗菌ペプチドによる膜細孔形成の分子シミュレーション研究2022

    • Author(s)
      川端 一正, 宮﨑 裕介, 篠田 渉
    • Organizer
      第60回生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 抗菌ペプチドがもつ膜選択性の分子論的研究2022

    • Author(s)
      川端 一正, 宮崎 裕介, 山田 哲平, 篠田 渉
    • Organizer
      第36回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 分子動力学法を用いた脂質ナノ粒子のエンドソーム脱出機構の解明2022

    • Author(s)
      柴田 果奈, Pratap Singh Akhil, 宮崎 裕介, 篠田 渉
    • Organizer
      第 73 回コロイドおよび界面化学討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Elucidation of inter-leaflet coupling in asymmetric membranes induced by very long chain sphingomyelin based on solid-state NMR2021

    • Author(s)
      Keeratisakulsith, T., Umegawa, Y., Tsuchikawa, H., Hanashima, S., Murata, M., Shinoda, W.
    • Organizer
      日本化学会第101春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] 分子シミュレーションを用いた抗菌ペプチドの膜選択性の解明2021

    • Author(s)
      川端一正、宮﨑裕介、篠田渉
    • Organizer
      第35回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] Coarse-Grained Molecular Dynamics of Biomolecular Self-Assembly: Membranes, Vesicles, Lipid Nanoparticles, Virus Capsids2021

    • Author(s)
      篠田 渉
    • Organizer
      Pacifichem2021
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] エタノール混合によるベシクル構造転移:マルチラメラ形成機構2021

    • Author(s)
      柴田果奈、真栄城正寿、渡慶次学、篠田渉
    • Organizer
      第35回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 生体高分子集合系の分子シミュレーション2021

    • Author(s)
      篠田 渉
    • Organizer
      第16回複雑生命系秩序懇談会
    • Invited
    • Data Source
      KAKENHI-PROJECT-23K21096
  • [Presentation] 固体リンNMRを用いたバクテリオロドプシンと周辺脂質の相互作用解析2019

    • Author(s)
      加藤翔、梅川雄一、村田道雄、Seo Sangjae、篠田渉
    • Organizer
      日本化学会第99春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Synthesis of novel 13C, 2H-labeled Amphotericin B and the conformational analysis of glycosidic linkage in lipid bilayers.2019

    • Author(s)
      Yamamoto, T., Umegawa, Y., Suzuki, T., Tsuchikawa, H., Hanashima, S., Murata, M., Matsumori, N., Seo, S., Funahashi, K., Shinoda, W.
    • Organizer
      日本化学会第99春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] メチル分岐アシル基含有リン脂質DPhPCが示す二重膜の安定性を担う分子配向・配座の解析2019

    • Author(s)
      斧拓冶、土川博史、山上正輝、梅川雄一、村田道雄、篠田渉
    • Organizer
      日本化学会第99春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] 混合モデル二重膜における極長鎖スフィンゴミエリンの内葉・外葉間相互作用の解明2019

    • Author(s)
      足立美和子、森内舞、土川博史・Seo Sangjae、篠田渉、村田道雄
    • Organizer
      日本化学会第99春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Molecular Dynamics Study of Stability of Amphotericin B Channel.2018

    • Author(s)
      Funahashi, K., Seo, S., Okazaki, S., Umegawa, Y., Murata, M., Shinoda. W.
    • Organizer
      Conference of EMLG/JMLG Meeting 2018 and 41st Symposium on Solution Chemistry of Japan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Molecular orientation and conformation of archaeal membrane lipid PGP-Me by solid-state NMR and its interaction with bacteriorhodopsin2018

    • Author(s)
      Yamagami Masaki、Tsuchikawa Hiroshi、Cui Jin、Kawatake Satoshi、Sato Fuminori、Umegawa Yuichi、Murata Michio、Seo Sangjar、Shinoda Wataru
    • Organizer
      日本化学会第98春季年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] アンフォテリシンBとステロールが形成するチャネル複合体の構造研究2018

    • Author(s)
      山本智也、梅川雄一、中川泰男、 鈴木大河、山上正輝、土川博史、花島慎弥、村田道雄、松森信明、Seo Sangjaed、篠田渉
    • Organizer
      第60回天然有機化合物討論会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Amphotericin B チャネルの構造安定性と疎水性ミスマッチによるチャネル間相互作用解析2018

    • Author(s)
      舟橋康佑, Sangjae Seo、岡崎進、梅川雄一、村田道雄、篠田渉
    • Organizer
      第32回分子シミュレーション討論会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Coarse-grained modeling of sphingomyelin and domain formation simulation.2018

    • Author(s)
      Seo, S., Shinoda, W.
    • Organizer
      Joint Conference of EMLG/JMLG Meeting 2018 and 41st Symposium on Solution Chemistry of Japan
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] Molecular dynamics simulations of domain formation in mixed lipid bilayers.2018

    • Author(s)
      Seo, S., Shinoda, W.
    • Organizer
      第56回日本生物物理学会年会
    • Data Source
      KAKENHI-PROJECT-16H06315
  • [Presentation] 膜の粗視化分子シミュレーション2015

    • Author(s)
      篠田 渉
    • Organizer
      第359回CBI学会講演会「粗視化による生体分子系のシミュレーション」
    • Place of Presentation
      東大、東京
    • Year and Date
      2015-02-24
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 膜構造形成の分子シミュレーション2014

    • Author(s)
      篠田 渉
    • Organizer
      日本物理学会第69回年次大会
    • Place of Presentation
      神奈川
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 膜の柔らかさと機能:分子シミュレーションによるアプローチ2014

    • Author(s)
      篠田 渉
    • Organizer
      日本化学会第94春期年会
    • Place of Presentation
      名古屋
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Coarse-Grained molecular Dynamics Study of Self-assembled Macromolecules2013

    • Author(s)
      篠田 渉
    • Organizer
      International Conference on Biomolecular Simulations & Dynamics
    • Place of Presentation
      Chennai, India
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Coarse-Grained Molecular Simulation of Lipid Self-Assembly2013

    • Author(s)
      篠田 渉
    • Organizer
      APS March Meeting 2013
    • Place of Presentation
      Baltimore, MD, USA
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Coarse-grained molecular dynamics study on stability of liposome and effect of carbon nanoparticles2013

    • Author(s)
      篠田 渉
    • Organizer
      246th ACS National Meeting
    • Place of Presentation
      Indianapolis, IN, USA
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Free Energy Analysis of Topological and Morphological Changes in Lipid Membranes: Molecular Dynamics Study2013

    • Author(s)
      篠田 渉、川本周平
    • Organizer
      3rd International Conference on Molecular Simulation 2013 (ICMS2013)
    • Place of Presentation
      神戸
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Molecular Dynamics Study of Lipid Self-Assembly2013

    • Author(s)
      篠田 渉
    • Organizer
      33rd International Conference on Solution Chemistry
    • Place of Presentation
      京都
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Effect of lipid components on the stability of stalk of membrane fusion2012

    • Author(s)
      川本周平、篠田 渉
    • Organizer
      IACIS2012 (International Association of Colloid and Interface Scientists, Conference)
    • Place of Presentation
      仙台
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 生体膜融合における融合細孔の形成過程のシミュレーション2012

    • Author(s)
      川本周平、篠田 渉
    • Organizer
      日本物理学会2012秋季大会
    • Place of Presentation
      横浜
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 階層的分子シミュレーションによる脂質膜・ベシクルの研究2012

    • Author(s)
      篠田 渉
    • Organizer
      第16回ペプチドフォーラム
    • Place of Presentation
      京都
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Morphology change of fusion stalk of lipid bilayer membrane studied by molecular dynamics simulation2012

    • Author(s)
      川本周平、篠田 渉
    • Organizer
      第50回日本物理学会年会
    • Place of Presentation
      名古屋
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Molecular Dynamics Study of Self-Assembly of Amphiphiles2012

    • Author(s)
      篠田渉
    • Organizer
      International Workshop : Mathematical approach to emerging topics in Material Science 2012
    • Place of Presentation
      東北大学(宮城)(招待講演)
    • Year and Date
      2012-02-19
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 曲げ応力による膜の曲げ弾性係数の解析手法2012

    • Author(s)
      川本周平、篠田 渉
    • Organizer
      第26回分子シミュレーション討論会
    • Place of Presentation
      福岡
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 膜融合の分子メカニズムの解析2012

    • Author(s)
      川本周平、篠田渉
    • Organizer
      第67回日本物理学会
    • Place of Presentation
      関西学院大学(大阪)
    • Year and Date
      2012-03-24
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 膜融合過程の自由エネルギー解析2012

    • Author(s)
      川本周平、篠田 渉
    • Organizer
      第26回分子シミュレーション討論会
    • Place of Presentation
      福岡
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Coarse Grained Molecular Simulations of Lipid Self-Assembly2012

    • Author(s)
      篠田 渉
    • Organizer
      Bridging Scales in Computational Polymer Chemistry
    • Place of Presentation
      Providence, RI, USA
    • Invited
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Molecular Dynamics Study of Effective Interaction Between Liposomes2012

    • Author(s)
      篠田 渉
    • Organizer
      IACIS2012 (International Association of Colloid and Interface Scientists, Conference)
    • Place of Presentation
      仙台
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Stability of Liposome : Free Energy Analysis of Vesicle-to-Bicelle Transformation2011

    • Author(s)
      篠田渉、中村壮伸、Steven O Nielsen
    • Organizer
      Conference on Computational Physics 2011
    • Place of Presentation
      Gatlinburg, Tennessee
    • Year and Date
      2011-11-02
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Molecular Simulation of Liposomal Membranes2011

    • Author(s)
      篠田渉
    • Organizer
      The 2nd international symposium on "Multi-scale Simulations of Biological and Soft Materials" (MSBSM 2011)
    • Place of Presentation
      京都大学芝蘭会館稲盛ホール(京都)(招待講演)
    • Year and Date
      2011-09-10
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Membrane Fusion: Free Energy Analysis

    • Author(s)
      篠田 渉、川本周平、Michael L. Klein
    • Organizer
      International Symposium on Extended Molecular Dynamics and Enhanced Sampling: Nosé Dynamics 30 Years (NOSE30)
    • Place of Presentation
      慶應大、東京
    • Year and Date
      2014-11-10 – 2014-11-11
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Coarse-grained model of membrane protein

    • Author(s)
      川本周平, Giacomo Fiorin, Chris MacDermaid, Russell DeVane, 篠田渉, Michael L. Klein
    • Organizer
      International Symposium on Extended Molecular Dynamics and Enhanced Sampling: Nosé Dynamics 30 Years (NOSE30)
    • Place of Presentation
      慶應大、東京
    • Year and Date
      2014-11-10 – 2014-11-11
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] Free Energy Analysis of Membrane Fusion

    • Author(s)
      川本周平、篠田渉、Michael L Klein
    • Organizer
      XXVI IUPAP Conference on Computational Physics, CCP2014
    • Place of Presentation
      Boston, USA
    • Year and Date
      2014-08-11 – 2014-08-14
    • Data Source
      KAKENHI-PROJECT-23350014
  • [Presentation] 膜タンパクの粗視化モデル

    • Author(s)
      川本周平, Giacomo Fiorin, Chris MacDermaid, Russell DeVane, 篠田渉, Michael L. Klein
    • Organizer
      第28回分子シミュレーション討論会
    • Place of Presentation
      仙台
    • Year and Date
      2014-11-12 – 2014-11-14
    • Data Source
      KAKENHI-PROJECT-23350014
  • 1.  MURATA Michio (40183652)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 12 results
  • 2.  花島 慎弥 (50373353)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 5 results
  • 3.  TSUZUKI Seiji (10357527)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  Miyazaki Tsuyoshi (50354147)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  OTSUKA Takao (30465968)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  梅川 雄一 (20587779)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 10 results
  • 7.  土川 博史 (30460992)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 9 results
  • 8.  三浦 薫 (90353515)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 9.  櫻井 香里 (50447512)
    # of Collaborated Projects: 1 results
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  • 10.  大澤 昂志 (00783226)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 11.  三木 康嗣 (60422979)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 12.  川口 祥正 (90936808)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  渡慶次 学 (60311437)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 14.  真栄城 正寿 (40744248)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 15.  浦野 諒 (00836976)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 16.  宮崎 裕介 (10963324)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 7 results
  • 17.  杉山 成 (90615428)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 18.  KLEIN Michael
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 7 results
  • 19.  SHIMIZU Nobutaka
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 20.  篠田 恵子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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