Tarumoto Yusuke 樽本雄介

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TARUMOTO Yusuke 樽本雄介

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Researcher Number	70551381
Other IDs	https://orcid.org/0000-0001-6652-9618
Affiliation (Current)	2025: 京都大学, 医生物学研究所, 助教
Affiliation (based on the past Project Information) *help	2022 – 2023: 京都大学, 医生物学研究所, 助教 2020 – 2021: 京都大学, ウイルス・再生医科学研究所, 助教 2015: 京都大学, 大学院生命科学研究科, 助教 2011 – 2014: 京都大学, 生命科学研究科, 助教 2012: 京都大学, 大学院・生命科学研究科, 助教
Review Section/Research Field	Principal Investigator Basic Section 44020:Developmental biology-related / Basic Section 43010:Molecular biology-related / Molecular biology Except Principal Investigator Medium-sized Section 43:Biology at molecular to cellular levels, and related fields / Genetics/Genome dynamics / Carcinogenesis
Keywords	Principal Investigator CRISPRスクリーニング / CRISPR / 遺伝子発現 / 未分化性 / 多能性幹細胞 / 遺伝子発現制御 / 遺伝子制御ネットワーク / ヒト多能性幹細胞 / 転写因子 / スクリーニング … More / 転写抑制補因子 / 分子生物学 / クロマチン / シグナル伝達 / ストレス応答 … More Except Principal Investigator テロメア / がん / 老化 / 染色体融合 / スクリーニング / がん化 / 細胞老化 / 染色体不安定化 / 姉妹染色分体融合 / エピジェネティックス / 発生・分化 / 発現制御 / ゲノム / 遺伝学 / 塩基除去修復 / CST複合体 / グアニン4重鎖構造 / 次世代シーケンサー / 皮膚発がん / ゲノム不安定性 Less

独自レポーター技術を用いた姉妹染色分体融合制御因子の探索
- Principal Investigator
  
  林眞理
- Project Period (FY)
  2023 – 2024
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 43:Biology at molecular to cellular levels, and related fields
- Research Institution
  Kyoto University
Analysis of regulatory mechanisms of stemness in human pluripotent stem cellsPrincipal Investigator
- Principal Investigator
  
  樽本雄介
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 44020:Developmental biology-related
- Research Institution
  Kyoto University
Transcriptional corepressor-mediated regulation of pluripotency in stem cellsPrincipal Investigator
- Principal Investigator
  
  Tarumoto Yusuke
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 43010:Molecular biology-related
- Research Institution
  Kyoto University
Regulation of chromatin structure and gene expression in cross-tolerance to environmental stressPrincipal Investigator
- Principal Investigator
  
  TARUMOTO Yusuke
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Molecular biology
- Research Institution
  Kyoto University
Formation of facultative heterochromatin in fission yeast
- Principal Investigator
  
  ISHIKAWA Fuyuki
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  Kyoto University
Telomere Functions in Cancer Development
- Principal Investigator
  
  ISHIKAWA Fuyuki
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (S)
- Research Field
  
  Carcinogenesis
- Research Institution
  Kyoto University

All 2023 2022 2021 2014 2013 2012 Other

All Journal Article Presentation

[Journal Article] RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations2023
- Author(s)
  Ishikawa Masato、Sugino Seiichi、Masuda Yoshie、Tarumoto Yusuke、Seto Yusuke、Taniyama Nobuko、Wagai Fumi、Yamauchi Yuhei、Kojima Yasuhiro、Kiryu Hisanori、Yusa Kosuke、Eiraku Mototsugu、Mochizuki Atsushi
- Journal Title
  
  Communications Biology
  
  Volume: 6 Issue: 1 Pages: 1290-1290
- DOI
  10.1038/s42003-023-05594-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K14156, KAKENHI-PROJECT-22K06237, KAKENHI-PROJECT-23K11299, KAKENHI-PROJECT-20K12059, KAKENHI-PLANNED-19H05678
[Journal Article] Cellular response to low-dose stress2014
- Author(s)
  樽本雄介、石川冬木
- Journal Title
  
  Leading Author's
  
  Volume: 3 Pages: e004
- DOI
  10.7875/leading.author.3.e004
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25840007
[Journal Article] Receptor for activated C-kinase (RACK1) homolog Cpc2 facilitates the general amino acid control response through Gcn2 kinase in fission yeast2013
- Author(s)
  Tarumoto, Y. Kanoh, J. Ishikawa, F.
- Journal Title
  
  The Journal of Biological Chemistry
  
  Volume: 288(26) Issue: 26 Pages: 19260-19268
- DOI
  10.1074/jbc.m112.445270
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22220012, KAKENHI-PLANNED-23114009, KAKENHI-PUBLICLY-25134710, KAKENHI-PROJECT-25650012, KAKENHI-PROJECT-25840007
[Journal Article] Tel1ATM and Rad3ATR phosphorylate the telomere protein Ccq1 to recruit telomerase and elongate telomeres in fission yeast2012
- Author(s)
  Yamazaki, H.
- Journal Title
  
  Genes & Development
  
  Volume: 26 Issue: 3 Pages: 241-246
- DOI
  10.1101/gad.177873.111
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22220012, KAKENHI-PROJECT-23657005
[Journal Article] HIRA, a conserved histone chaperone plays an essential role in low-dose stress response via transcriptional stimulation in fission yeast2012
- Author(s)
  Chujo, M.
- Journal Title
  
  The Journal of Biological Chemistry
  
  Volume: 287 Issue: 28 Pages: 23440-23450
- DOI
  10.1074/jbc.m112.349944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22220012, KAKENHI-PROJECT-23657005
[Presentation] Analysis of transcriptional network in human pluripotent stem cell2023
- Author(s)
  Yusuke Tarumoto
- Organizer
  Workshop - Stem Cells and Development -
- Invited
- Data Source
  KAKENHI-PROJECT-22K06237
[Presentation] ヒト多能性幹細胞の遺伝子制御ネットワークの解析2023
- Author(s)
  樽本雄介、杉野成一、Katarzyna Tilgner、Bahar Mirshekar、増田芳恵、石川雅人、瀬戸裕介、谷山暢子、和穎文、山内悠平、永樂元次、望月敦史、遊佐宏介
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22K06237
[Presentation] CRISPRによる転写制御系を用いた遺伝子発現制御ネットワークの動態解析2023
- Author(s)
  樽本雄介、杉野成一、遊佐宏介
- Organizer
  日本ゲノム編集学会第8回大会
- Data Source
  KAKENHI-PROJECT-22K06237
[Presentation] CRISPRを用いた多能性幹細胞における遺伝子発現ネットワークの解析2022
- Author(s)
  樽本雄介、杉野成一、遊佐宏介
- Organizer
  日本ゲノム編集学会第7回大会
- Data Source
  KAKENHI-PROJECT-22K06237
[Presentation] Transcriptional corepressor-mediated regulation in human pluripotent stem cells2021
- Author(s)
  Yusuke Tarumoto, Katarzyna Tilgner, Bahar Mirshekar, Yoshie Masuda, Seiichi Sugino, Kosuke Yusa
- Organizer
  第18回幹細胞シンポジウム
- Data Source
  KAKENHI-PROJECT-20K15714
[Presentation] 分裂酵母Cpc2はストレス応答性MAPキナーゼを介したストレス応答を促進する2013
- Author(s)
  樽本雄介、加納純子、上野敏秀、間野博行、石川冬木
- Organizer
  第86回日本生化学会大会
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-25840007
[Presentation] Fission yeast Cpc2 facilitates stress-activated MAP kinase-mediated stress response2013
- Author(s)
  Yusuke Tarumoto, Junko Kanoh, Toshihide Ueno, Hiroyuki Mano, Fuyuki Ishikawa
- Organizer
  EMBO Conference on Fission Yeast: pombe 2013
- Place of Presentation
  イギリス、ロンドン
- Data Source
  KAKENHI-PROJECT-25840007
[Presentation] Fission yeast HIRA histone chaperone facilitates stress-induced transcriptional response
- Author(s)
  Yusuke Tarumoto, Moeko Chujo, Koichi Miyatake, Eisuke Nishida, and Fuyuki Ishikawa
- Organizer
  IIAS Research Conference 2014: Chromatin Decoding
- Place of Presentation
  京都
- Year and Date
  2014-05-12 – 2014-05-15
- Data Source
  KAKENHI-PROJECT-25840007
[Presentation] 分裂酵母Stn1の染色体構造維持における役割
- Author(s)
  滝川雅大、樽本雄介、石川冬木
- Organizer
  第37回日本分子生物学会年会
- Place of Presentation
  横浜
- Year and Date
  2014-11-25 – 2014-11-27
- Data Source
  KAKENHI-PROJECT-25840007

1. ISHIKAWA Fuyuki (30184493)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
2. NABETANI Akira (40334495)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. SAKAKIBARA Yasubumi (10287427)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
4. WAKABAYASHI Yuichi (40303119)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. FUJIYOSHI Satoru (70371705)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. 林眞理 (90761099)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 山内悠平

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Tarumoto Yusuke 樽本 雄介

TARUMOTO Yusuke 樽本 雄介

Research Projects

Research Products

Co-Researchers

独自レポーター技術を用いた姉妹染色分体融合制御因子の探索

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Analysis of regulatory mechanisms of stemness in human pluripotent stem cellsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Transcriptional corepressor-mediated regulation of pluripotency in stem cellsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Review Section

Research Institution

Regulation of chromatin structure and gene expression in cross-tolerance to environmental stressPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Formation of facultative heterochromatin in fission yeast

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Telomere Functions in Cancer Development

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Journal Article] RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations2023

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Cellular response to low-dose stress2014

Author(s)

Journal Title

DOI

Language

Data Source

[Journal Article] Receptor for activated C-kinase (RACK1) homolog Cpc2 facilitates the general amino acid control response through Gcn2 kinase in fission yeast2013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Tel1ATM and Rad3ATR phosphorylate the telomere protein Ccq1 to recruit telomerase and elongate telomeres in fission yeast2012

Author(s)

Journal Title

DOI

Data Source

[Journal Article] HIRA, a conserved histone chaperone plays an essential role in low-dose stress response via transcriptional stimulation in fission yeast2012

Author(s)

Journal Title

DOI

Data Source

[Presentation] Analysis of transcriptional network in human pluripotent stem cell2023

Author(s)

Organizer

Data Source

[Presentation] ヒト多能性幹細胞の遺伝子制御ネットワークの解析2023

Author(s)

Organizer

Data Source

[Presentation] CRISPRによる転写制御系を用いた遺伝子発現制御ネットワークの動態解析2023

Author(s)

Organizer

Data Source

[Presentation] CRISPRを用いた多能性幹細胞における遺伝子発現ネットワークの解析2022

Tarumoto Yusuke 樽本雄介

TARUMOTO Yusuke 樽本雄介