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Sakakibara Yasubumi  榊原 康文

ORCIDConnect your ORCID iD *help
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SAKAKIBARA Yasubumi  榊原 康文

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Researcher Number 10287427
Other IDs
External Links
Affiliation (Current) 2022: 慶應義塾大学, 理工学部(矢上), 教授
Affiliation (based on the past Project Information) *help 2017 – 2022: 慶應義塾大学, 理工学部(矢上), 教授
2017 – 2018: 慶應義塾大学, 理工学部, 教授
2017: 慶応義塾大学, 理工学部, 教授
2011 – 2015: 慶應義塾大学, 理工学部, 教授
2009 – 2010: 慶応大学, 理工学部, 教授 … More
2005 – 2009: 慶應義塾大学, 理工学部, 教授
2006: 慶応義塾大学, 理工学部, 教授
2004: 慶應義塾大学, 電気通信学部, 助教授
2002 – 2004: 慶應義塾大学, 理工学部, 助教授
2001: 東京電機大学, 理工学部, 教授 Less
Review Section/Research Field
Principal Investigator
Biological Sciences / System genome science / Intelligent informatics / Bioinformatics/Life informatics / Science and Engineering / Medium-sized Section 62:Applied informatics and related fields
Except Principal Investigator
Science and Engineering / Bioinformatics/Life informatics / Neurochemistry/Neuropharmacology / Pediatrics … More / Carcinogenesis / Neurochemistry/Neuropharmacology / Environmental and hygienic pharmacy / Chemical biology / Laboratory animal science / Experimental pathology / Basic Section 49020:Human pathology-related Less
Keywords
Principal Investigator
非コードRNA / 次世代シークエンサー / バイオインフォマティクス / 深層学習 / 比較ゲノム / マルチプルアライメント / ゲノム再編成 / 2次構造予測 / 機能性RNA / アセンブリ … More / シンテニーブロック / 分子進化距離 / 構造的アライメント / 2次構造 / スコア行列 / 発がん / 遺伝子発現解析 / 腫瘍 / マウス / DNAコンピュータ / 分子計算 / 学習 / 生体高分子 / 超並列計算 / バイオテクノロジー / ブール関数 / オートマトン / 生体分子 / 無細胞タンパク質合成系 / 計算理論 / DNA Computer / Molecular Computing / Machine Learning / Biomolecule / Massive Parallel / Biotechnology / Boolean Function / Automaton / 転写結合モチーフ / 転写制御 / 隠れマルコフモデル / プロモーター / クロマチン免疫沈降 / 血小板由来増殖因子 / 主成分分析 / クラスタリング / モチーフ変異体 / 決定木 / レポーターアッセイ / 分子細胞生物学 / 転写因子結合部位 / ゲルシフトアッセイ / transcription biding site / transcriptional regulation / hidden Markov model / promoter sequence / chromatin immunoprecipitation / EGFR / ケミカルスペース / マルチオミックス / バーチャルスクリーニング / 人工知能 / 化合物フィンガープリント / 相互作用 / 遺伝子発見 … More
Except Principal Investigator
大脳皮質 / 発生・分化 / 神経科学 / 脳・神経 / 細胞移動 / 次世代DNAシーケンサー / リシーケンシング / 皮膚発がん / 自律計算 / 配列設計 / バクテリアコンピュータ / 自然計算 / 非線形科学 / 少数分子系 / 階層グラフ書換え / DNAコンピュータ / 情報基礎 / 自己組織化 / 生体機能利用 / 分子機械 / 核外移行シグナル / レプトマイシン / 2次元電気泳動 / ペプチドマスフィンガープリント / HeLa細胞 / アルゴリズム / コンセンサス配列 / プロテオーム / 隠れマルコフモデル / 遺伝的アルゴリズム / プロファイル / 神経細胞移動 / 辺縁帯 / IPA / カルシウム / 樹状突起形成 / 小児神経学 / 治療法開発 / 低分子化合物 / インシリコ解析 / 中枢神経障害 / シャペロン / ルシフェラーゼ / RNA-seq / ChIP-seq / de novo配列決定 / 個人ゲノム / GWAS / インフォームドコンセント / 次世代DNAシーケンサ / ゲノム不安定性 / テロメア / 次世代シーケンサー / グアニン4重鎖構造 / CST複合体 / 塩基除去修復 / Helicobacter pylori / 鉄 / FecA1 / 除菌療法 / 酸化ストレス / in silico / メトロニダゾール / H. pylori / NDGA / グライコミクス / 糖鎖工学 / 糖鎖プライマー / 質量分析装置 / がん細胞 / インフルエンザウイルス / C型肝炎ウイルス / iPS細胞 / 糖鎖ライブラリー / ムコ多糖症 / 腫瘍マーカー / オリゴ糖 / 転移性がん細胞 / O-グリカン / グリコサミノグリカン / 糖鎖 / 糖脂質 / Oーグリカン / 糖鎖解析 / DMBA-TPA多段階皮膚発がん / 日本産野生マウス系統 / 発がん抵抗性/感受性遺伝子 / 副甲状腺ホルモン / DMBA/TPA / 日本産野生由来近交系 / 発がん / 日本野生由来近交系マウス / 多段階皮膚発がん / 発がん感受性/抵抗性遺伝子座 / 皮膚発がん抵抗性遺伝子座 / 順遺伝学 / Meis1 / Stk25 / 化学発がん / ChIP sequencing / SU11274 / DMBA / TPA / 扁平上皮がん / Hif1α / p16 / p19 / Chipシーケンシング / 化学コミュニケーション / 分子社会学 / 天然物化学 / ケミカルバイオロジー / 生物活性リガンド / 新規ゲノム配列決定 / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター / ゲノムアッセンブル / ゲノム多型 / メタゲノム / ゲノムアノテーション / 病理診断 / 人工知能 / オミックス解析 / 病理画像 / CpGアイランドメチル化形質 Less
  • Research Projects

    (20 results)
  • Research Products

    (144 results)
  • Co-Researchers

    (154 People)
  •  Pathological diagnosis based on integration of morphological images and multi-layer omics data by artificial intelligence

    • Principal Investigator
      金井 弥栄
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 49020:Human pathology-related
    • Research Institution
      Keio University
  •  非コードRNA遺伝子をゲノムワイドに発見する汎用システムPrincipal Investigator

    • Principal Investigator
      榊原 康文
    • Project Period (FY)
      2018 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Keio University
  •  Deep analysis of chemical communication space using artificial intelligence technologyPrincipal Investigator

    • Principal Investigator
      Sakakibara Yasubumi
    • Project Period (FY)
      2017 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Keio University
  •  Frontiers in Chemical Communications

    • Principal Investigator
      Kakeya Hideaki
    • Project Period (FY)
      2017 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Kyoto University
  •  先進ゲノム解析研究推進プラットフォーム

    • Principal Investigator
      小原 雄治
    • Project Period (FY)
      2016 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
    • Research Institution
      National Institute of Genetics
  •  Identification of cancer-related gene polymorphisms by genetic integration of mouse and human

    • Principal Investigator
      Okumura Kazuhiro
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Laboratory animal science
    • Research Institution
      Chiba Cancer Center (Research Institute)
  •  Elucidation of the mechanisms of carcinogenesis regulated by oxidative stress response

    • Principal Investigator
      WAKABAYASHI Yuichi
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Experimental pathology
    • Research Institution
      Chiba Cancer Center (Research Institute)
  •  Exploitation of pathogenic gastrointestinal bacteria specific molecular tageting therapy

    • Principal Investigator
      Suzuki Hidekazu
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Environmental and hygienic pharmacy
    • Research Institution
      Keio University
  •  Comprehensive analysis of functional non-coding RNAs in cancer genome on multistage carcinogenesisPrincipal Investigator

    • Principal Investigator
      SAKAKIBARA Yasubumi
    • Project Period (FY)
      2011 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      System genome science
    • Research Institution
      Keio University
  •  Analysis and control of cell function based on novel glycomics using saccharide primer method

    • Principal Investigator
      Sato Toshinori
    • Project Period (FY)
      2011 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Chemical biology
    • Research Institution
      Keio University
  •  Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

    • Principal Investigator
      KOHARA Yuji
    • Project Period (FY)
      2010 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      National Institute of Genetics
  •  Telomere Functions in Cancer Development

    • Principal Investigator
      ISHIKAWA Fuyuki
    • Project Period (FY)
      2010 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research (S)
    • Research Field
      Carcinogenesis
    • Research Institution
      Kyoto University
  •  Mechanisms of the development of neuronal cell community in the central nervous system

    • Principal Investigator
      NAKAJIMA Kazunori
    • Project Period (FY)
      2010 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Neurochemistry/Neuropharmacology
    • Research Institution
      Keio University
  •  ケミカルシャペロン療法のための革新的スクリーニング法の開発

    • Principal Investigator
      難波 栄二
    • Project Period (FY)
      2009 – 2010
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Pediatrics
    • Research Institution
      Tottori University
  •  Mechanisms of the development of neuronal cell community in the central nervous system

    • Principal Investigator
      NAKAJIMA Kazunori
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Neurochemistry/Neuropharmacology
    • Research Institution
      Keio University
  •  Development of computational methods for comparing a large scale multiple genome sequencesPrincipal Investigator

    • Principal Investigator
      SAKAKIBARA Yasubumi
    • Project Period (FY)
      2005 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Biological Sciences
    • Research Institution
      Keio University
  •  SYS tern Analysis of Transcriptional Regulation ProgramPrincipal Investigator

    • Principal Investigator
      SAKAKIBARA Yasubumi
    • Project Period (FY)
      2004 – 2006
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      KEIO UNIVERSITY
  •  計算的プロテオーム解析による核外移行シグナルの同定

    • Principal Investigator
      IMOTO Masaya
    • Project Period (FY)
      2003 – 2004
    • Research Category
      Grant-in-Aid for Exploratory Research
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Keio University
  •  構造的分子計算理論-自律的計算系の解析と設計のための基礎理論

    • Principal Investigator
      上田 和紀, 横森 貴
    • Project Period (FY)
      2002 – 2006
    • Research Category
      Grant-in-Aid for Scientific Research on Priority Areas
    • Review Section
      Science and Engineering
    • Research Institution
      Waseda University
  •  DNA-based Learning Algorithms and their ApplicationsPrincipal Investigator

    • Principal Investigator
      SAKAKIBARA Yasubumi
    • Project Period (FY)
      2001 – 2003
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Intelligent informatics
    • Research Institution
      Keio University
      Tokyo Denki University

All 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2009 2008 2007 2006 2005 2004 Other

All Journal Article Presentation Patent

  • [Journal Article] Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning2022

    • Author(s)
      Akiyama Manato、Sakakibara Yasubumi
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 4

    • DOI

      10.1093/nargab/lqac012

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127
  • [Journal Article] Deep learning integration of molecular and interactome data for protein-compound interaction prediction2021

    • Author(s)
      Watanabe Narumi、Ohnuki Yuuto、Sakakibara Yasubumi
    • Journal Title

      Journal of Cheminformatics

      Volume: 13

    • DOI

      10.1186/s13321-021-00513-3

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Journal Article] MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenome assembly2021

    • Author(s)
      Liang Kuo-ching、Sakakibara Yasubumi
    • Journal Title

      BMC Bioinformatics

      Volume: 22

    • DOI

      10.1186/s12859-020-03737-6

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Journal Article] Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset2021

    • Author(s)
      Jayakumar Vasanthan、Nishimura Osamu、Kadota Mitsutaka、Hirose Naoki、Sano Hiromi、Murakawa Yasuhiro、Yamamoto Yumiko、Nakaya Masataka、Tsukiyama Tomoyuki、Seita Yasunari、Nakamura Shinichiro、Kawai Jun、Sasaki Erika、Ema Masatsugu、Kuraku Shigehiro、Kawaji Hideya、Sakakibara Yasubumi
    • Journal Title

      Scientific Data

      Volume: 8 Pages: 159-159

    • DOI

      10.1038/s41597-021-00935-6

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K21370, KAKENHI-PROJECT-20K21407, KAKENHI-PLANNED-17H06410, KAKENHI-PLANNED-20H05763, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-19K16023, KAKENHI-PROJECT-20KK0186
  • [Journal Article] Genomic style: yet another deep-learning approach to characterize bacterial genome sequences2021

    • Author(s)
      Yoshimura Yuka、Hamada Akifumi、Augey Yohann、Akiyama Manato、Sakakibara Yasubumi
    • Journal Title

      Bioinformatics Advances

      Volume: 1

    • DOI

      10.1093/bioadv/vbab039

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127
  • [Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation2021

    • Author(s)
      Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi, et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Pages: 2700-2720

    • DOI

      10.1093/nar/gkab059

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19H05466, KAKENHI-PUBLICLY-19H05268, KAKENHI-PLANNED-19H05753, KAKENHI-PROJECT-18H02421, KAKENHI-PROJECT-18J22025, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19424, KAKENHI-PROJECT-20H03175
  • [Journal Article] A Max-Margin Model for Predicting Residue?Base Contacts in Protein?RNA Interactions2021

    • Author(s)
      Kashiwagi Shunya、Sato Kengo、Sakakibara Yasubumi
    • Journal Title

      Life

      Volume: 11 Pages: 1135-1135

    • DOI

      10.3390/life11111135

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K22897, KAKENHI-PLANNED-17H06410
  • [Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data2020

    • Author(s)
      Vasanthan Jayakumar, Hiromi Ishii, Misato Seki, Wakako Kumita, Takashi Inoue, Sumitaka Hase, Kengo Sato, Hideyuki Okano, Erika Sasaki, Yasubumi Sakakibara
    • Journal Title

      BMC Genomics

      Volume: 21 Pages: 243-243

    • DOI

      10.1186/s12864-020-6657-2

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19K22897, KAKENHI-PROJECT-16K00404, KAKENHI-PROJECT-19K06462, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-19H04210
  • [Journal Article] MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenomics assembly2020

    • Author(s)
      Liang KC, Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: in press

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Journal Article] Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model.2018

    • Author(s)
      Aoto Y, Okumura K, Hachiya T, Hase S, Wakabayashi Y, Ishikawa F, Sakakibara Y.
    • Journal Title

      Sci Rep

      Volume: 8 Issue: 1 Pages: 12994-12994

    • DOI

      10.1038/s41598-018-31349-x

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K07080, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279
  • [Journal Article] Convolutional neural network based on SMILES representation of compounds for detecting chemical motif2018

    • Author(s)
      Hirohara Maya、Saito Yutaka、Koda Yuki、Sato Kengo、Sakakibara Yasubumi
    • Journal Title

      BMC Bioinformatics

      Volume: 19 Pages: 526-526

    • DOI

      10.1186/s12859-018-2523-5

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16K00404, KAKENHI-PLANNED-17H06410
  • [Journal Article] Transcription factor DUOI generated by neo-functionalization is associated with evolution of sperm differentiation in plants.2018

    • Author(s)
      Higo, A., Kawashima, T., Borg, M., Zhao, M., Lopez-Vidriero, I., Sakayama, H., et al. (他18名)
    • Journal Title

      Nat Commun.

      Volume: 9 Issue: 1 Pages: 5283-5283

    • DOI

      10.1038/s41467-018-07728-3

    • NAID

      120006543439

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K06382, KAKENHI-PROJECT-18K19365, KAKENHI-PLANNED-17H06472, KAKENHI-PUBLICLY-18H04836, KAKENHI-PROJECT-15H04391, KAKENHI-PROJECT-15H05237, KAKENHI-PROJECT-16K07398, KAKENHI-PROJECT-16H05764, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H07424, KAKENHI-PROJECT-16H04836, KAKENHI-PROJECT-18K06367
  • [Journal Article] A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model2018

    • Author(s)
      Akiyama Manato、Sato Kengo、Sakakibara Yasubumi
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 16 Pages: 1840025-1840025

    • DOI

      10.1142/s0219720018400255

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16K00404, KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-18J21767
  • [Journal Article] Convolutional neural networks for classification of alignments of non-coding RNA sequences2018

    • Author(s)
      Aoki, G. Sakakibara, Y.
    • Journal Title

      Bioinformatics

      Volume: 34

    • DOI

      10.1093/bioinformatics/bty228

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-17H06410, KAKENHI-PROJECT-18H04127, KAKENHI-PROJECT-16H06279
  • [Journal Article] Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data2017

    • Author(s)
      Vasanthan Jayakumar and Yasubumi Sakakibara
    • Journal Title

      Briefings in Bioinformatics

    • DOI

      10.1093/bib/bbx147

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] DEclust : A statistical approach for obtaining differential expression profiles of multiple conditions2017

    • Author(s)
      Aoto Y, Hachiya T, Okumura K, Hase S, Sato K, Wakabayashi Y, and Sakakibara Y.
    • Journal Title

      PLoS One

      Volume: 12 (11)

    • DOI

      10.1371/journal.pone.0188285

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K06817, KAKENHI-PROJECT-15K08438, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-17H06410
  • [Journal Article] Inter-species hormonal control of host root morphology by parasitic plants2017

    • Author(s)
      Spallek, T., Melnyk, C. W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H., Shirasu, K.
    • Journal Title

      PNAS

      Volume: 印刷中 Pages: 5283-5288

    • DOI

      10.1073/pnas.1619078114

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05959, KAKENHI-PROJECT-24228008, KAKENHI-PROJECT-17K07705, KAKENHI-INTERNATIONAL-15K21750, KAKENHI-PROJECT-25711019, KAKENHI-PLANNED-15H05962, KAKENHI-PUBLICLY-16H01477, KAKENHI-PROJECT-16H06279
  • [Journal Article] Genome sequence and analysis of the Japanese morning glory, Ipomoea nil.2016

    • Author(s)
      Hoshino A, Jayakumar V, Toyoda A, Noguchi H, Itoh T, Seki M, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Sakakibara Y, et al.
    • Journal Title

      Nat Commun,

      Volume: 7 Pages: 132395-132395

    • DOI

      10.1038/ncomms13295

    • NAID

      120005997914

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26221106, KAKENHI-PROJECT-16H04719, KAKENHI-PROJECT-15K07118, KAKENHI-PROJECT-16H06279
  • [Journal Article] An algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.2016

    • Author(s)
      Tsuchiya M, Amano K, Abe M, Seki M, Hase S, Sato K, Sakakibara Y.
    • Journal Title

      Bioinformatics

      Volume: 32 Issue: 12

    • DOI

      10.1093/bioinformatics/btw273

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Journal Article] A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum2015

    • Author(s)
      Kumozaki, S., Sato, K., Sakakibara, Y.
    • Journal Title

      IEEE/ACM Trans Comput Biol Bioinform

      Volume: 印刷中

    • Peer Reviewed / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Journal Article] Nordihydroguaiaretic Acid disrupts the antioxidant ability of Helicobacter pylori through the repression of SodB activity in vitro2015

    • Author(s)
      Tsugawa, H., Mori, H., Matsuzaki, J., Masaoka, T., Hirayama, T., Nagasawa, H., Sakakibara, Y., Suematsu, M., Suzuki, H.
    • Journal Title

      BioMedical Research International

      Volume: 2015 Pages: 734548-734548

    • DOI

      10.1155/2015/734548

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-26670065, KAKENHI-PROJECT-25460173, KAKENHI-PROJECT-25460301, KAKENHI-PROJECT-25293178, KAKENHI-PROJECT-25702050
  • [Journal Article] A machine learning based approach to de novo sequencing of glycans from tandem mass spectrometry spectrum.2015

    • Author(s)
      Kumozaki, S., Sato, K., and Sakakibara, Y.
    • Journal Title

      IEEE/ACM Trans Comput Biol Bioinform,

      Volume: in press

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] MetaVelvet-SL: An extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning.2015

    • Author(s)
      Afiahayati, Sato, K., and Sakakibara, Y.
    • Journal Title

      DNA Research

      Volume: 22 Pages: 69-77

    • DOI

      10.1093/dnares/dsu041

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
  • [Journal Article] Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis2015

    • Author(s)
      Sato, K., Kuroki, Y., Kumita, W., Fujiyama, A., Toyoda, A., Kawai, J., Iriki, A., Sasaki, E., Okano, H., Sakakibara, Y.
    • Journal Title

      Scientific Reports

      Volume: 5 Pages: 16894-16894

    • DOI

      10.1038/srep16894

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
  • [Journal Article] Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads.2014

    • Author(s)
      Kamada, M., Hase, S., Sato, K., Toyoda, A., Fujiyama, A., Sakakibara, Y.
    • Journal Title

      PLOS ONE,

      Volume: 9

    • DOI

      10.1371/journal.pone.0109999

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-25330348, KAKENHI-PROJECT-221S0002
  • [Journal Article] Meis1 regulates epidermal stem cells and is required for skin tumorigenesis.2014

    • Author(s)
      Okumura K, Saito M, Isogai E, Aoto Y, Hachiya T, Sakakibara Y, Katsuragi Y, Hirose S, Kominami R, Goitsuka R, Nakamura T and Wakabayashi Y.
    • Journal Title

      PLoS One

      Volume: 9

    • DOI

      10.1371/journal.pone.0102111

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-ORGANIZER-24111001, KAKENHI-PUBLICLY-25111513, KAKENHI-PROJECT-25292194, KAKENHI-PROJECT-26250029, KAKENHI-PROJECT-26640085
  • [Journal Article] An extended genovo metagenomic assembler by incorporating paired-end information2013

    • Author(s)
      Afiahayati, Sato K., Sakakibara Y.
    • Journal Title

      PeerJ

      Volume: 1

    • DOI

      10.7717/peerj.196

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
  • [Journal Article] Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate evolution.2013

    • Author(s)
      Tabata H, Hachiya T, Nagata K, Sakakibara Y, Nakajima K
    • Journal Title

      Front. Neuroanat

      Volume: 7 Pages: 24-24

    • DOI

      10.3389/fnana.2013.00024

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-ORGANIZER-22111001, KAKENHI-PLANNED-22111004, KAKENHI-PROJECT-22240041, KAKENHI-PUBLICLY-25123727, KAKENHI-PROJECT-25430046, KAKENHI-PROJECT-221S0002
  • [Journal Article] TAG-1-assisted rogenitor elongation streamlines nuclear migration to optimize subapical crowding.2013

    • Author(s)
      Okamoto M, Namba T, Shinoda T, Kondo T, Watanabe T, Inoue Y, Takeuchi K, Enomoto Y, Ota K, Oda K, Wada Y, Sagou K, Saito K, Sakakibara A, Kawaguchi A, Nakajima K, Adachi T, Fujimori T, Ueda M, Hayashi S, Kaibuchi K, Miyata T
    • Journal Title

      Nature neuroscience

      Volume: 16 Pages: 1556-1566

    • DOI

      10.1038/nn.3525

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-21116005, KAKENHI-ORGANIZER-22111001, KAKENHI-PLANNED-22111002, KAKENHI-PLANNED-22111004, KAKENHI-PLANNED-22111006, KAKENHI-PLANNED-22111007, KAKENHI-PROJECT-22240041, KAKENHI-PROJECT-23500410, KAKENHI-PROJECT-23700463, KAKENHI-PROJECT-25830033
  • [Journal Article] Development of a rifampicin-resistant Bacillus subtilis strain for natto-fermentation showing enhanced exoenzyme production2013

    • Author(s)
      Yuji Kubo
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 115 Issue: 6 Pages: 654-657

    • DOI

      10.1016/j.jbiosc.2012.12.012

    • NAID

      110009614950

    • ISSN
      1389-1723
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22780078, KAKENHI-PROJECT-221S0002
  • [Journal Article] SAMSCOPE : An OpenGL based real-time interactive scale-free SAM viewer2012

    • Author(s)
      Popendorf, K. and Sakakibara, Y.
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 1276-1277

    • DOI

      10.1093/bioinformatics/bts122

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
  • [Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012

    • Author(s)
      Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 745-746

    • DOI

      10.1093/bioinformatics/bts031

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012

    • Author(s)
      Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: 13

    • DOI

      10.1186/1471-2105-13-s17-s8

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
  • [Journal Article] MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads2012

    • Author(s)
      Namiki, T., Hachiya, T., Tanaka, H., and Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research

      Volume: 40

    • DOI

      10.1093/nar/gks678

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
  • [Journal Article] DAFS : simultaneous aligning and folding of RNA sequences via dual decomposition2012

    • Author(s)
      Kengo Sato, Yuki Kato, Tatsuya Akutsu, Kiyoshi Asai, Yasubumi Sakakibara
    • Journal Title

      Bioinformatics

      Volume: 28 Pages: 3218-3224

    • DOI

      10.1093/bioinformatics/bts612

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22240009, KAKENHI-PROJECT-22240031, KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-23650153, KAKENHI-PROJECT-24700296, KAKENHI-PROJECT-221S0002
  • [Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011

    • Author(s)
      Okada, Y., Saito, Y., Sato, K., Sakakibara, Y.
    • Journal Title

      Frontiers in Genetics

      Volume: 2 Pages: 54-54

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] Improved measurements of RNA structure conservation with generalized centroid estimators2011

    • Author(s)
      Yohei Okada
    • Journal Title

      Frontiers in Genetics

      Volume: 2 Pages: 54-54

    • DOI

      10.3389/fgene.2011.00054

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-22700305, KAKENHI-PROJECT-23241066
  • [Journal Article] Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures2011

    • Author(s)
      Saito, Y., Sato, K., Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: 12

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] Genome-wide searching with base-pairing kernel functions for non-coding RNAs : computational and expression analysis of snoRNA families in Caenorhabditis elegans2009

    • Author(s)
      Morita, M., Saito, Y., Sato, K., Oka, K., Hotta, K., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 37(3)

      Pages: 999-1009

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Genome-wide searching with base-pairing kernel functions for non-coding RNAs2009

    • Author(s)
      M. Morita, Y. Saito, K Sato, K Oka, K Hotta, and Y. Sakakibara
    • Journal Title

      Nucleic Acids Research 37

      Pages: 999-1009

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Integrating statistical predictions and experimental Verifications for enhancing protein-chemical interaction predictions in virtual screening2009

    • Author(s)
      Nagamine, N., Shirakawa, T., Minato, Y., Torii, K., Kobayashi, H., Imoto, M., Sakakibara, Y.
    • Journal Title

      PLoS Computational Biology 5(6)

      Pages: 1000397-1000397

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Whole-genome tiling array analysis of Mycobacterium leprae RNA reveals high expression of pseudogenes and noncoding regions2009

    • Author(s)
      Akama, T., Suzuki, K., Tanigawa, T., Kawashima, A., Wu, H., Nakata, N., Osana, Y., Sakakibara, Y., Ishii, N.
    • Journal Title

      Journal of Bacteriology 191

      Pages: 3321-3327

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Genome-wide searching with base-pairing kernel functions for non-coding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans2009

    • Author(s)
      Morita, M., Saito, Y., Sato, K., Oka, K., Hotta, K., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 37(3)

      Pages: 999-1009

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Accurate identification of orthologous segments among multiple genomes2009

    • Author(s)
      Hachiya, T., Osana, Y., Popendorf, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 25(7)

      Pages: 853-860

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Whole-genome tiling array analysis of Mycobacterium leprae RNA reveals high expression of pseudogenes and noncoding regions2009

    • Author(s)
      Akama, T., Suzuki, K., Tanigawa, T., Kawashima, A., Wu, H., Nakata, N., Osana. Y.. Sakakibara, Y.. Ishii, N.
    • Journal Title

      Journal of Bacteriology 191

      Pages: 3321-3327

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Sensitive detection of conserved gene clusters unravels the evolutionary forces behind the correlation between protein sequence homology and geneorder conservation.2009

    • Author(s)
      Hachiya, T., Sakakibara, Y.
    • Journal Title

      Genes, Genomes and Genomics 3(1)

      Pages: 31-45

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] PSSMTS: position specific scoring matrices on tree structures2008

    • Author(s)
      Sato, K., Morita, K., and Sakakibara, Y.
    • Journal Title

      Journal of Mathematical Biology y 56

      Pages: 201-214

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Software. ncrna. org: web servers for analyses of RNA sequences2008

    • Author(s)
      Asai, K, Kiryu, H, Hamada, M, Tabei, Y, Sato, K, Matsui, H, Sakakibara, Y, Terai, G,, Mituyama, T.
    • Journal Title

      Nucleic Acids Res. 36

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Directed acyclic graph kernels for structural RNA analysis2008

    • Author(s)
      K Sato, T. Mituyama, K Asai, and Y. Sakakibara
    • Journal Title

      BMC Bioinformatics 9

      Pages: 318-318

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] PSSMTS: position specific scoring matrices on tree structures2008

    • Author(s)
      Sato, K., Morita, K., Sakakibara, Y.
    • Journal Title

      Journal of Mathematical Biology 56

      Pages: 201-214

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Software.ncrna.org : web servers for analyses of RNA sequences2008

    • Author(s)
      Asai, K, Kiryu, H, Hamada., M., Tabei, Y., Sato, K, Matsui, H., Sakakibara, Y., Terai, G., and Mituyama. T.
    • Journal Title

      Nucleic Acids Research 36

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Directed acyclic graph kernels for structural RNA analysis2008

    • Author(s)
      Sato, K., Mituyama, T., Asai, K., Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics 9

      Pages: 318-318

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Stem kernels for KNA sequence analyses2007

    • Author(s)
      Sakakibara, Y., Ogawa, N・, Popendorf, K., Asai, K., and K. Sato
    • Journal Title

      Journal of Bioinformatics and Computational Biology 5・6

      Pages: 1103-1122

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Stem Kernels for RNA Sequence Analyses2007

    • Author(s)
      Sakakibara, Y., Asai, K., Sato, K.
    • Journal Title

      Proc. 1st International Conference on Bioinformatics Research and Development

      Pages: 278-291

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Stem kernels for RNA sequence analyses2007

    • Author(s)
      Sakakibara, Y., Ogawa, N., Popendorf, K., Asai, K., K. Sato
    • Journal Title

      Journal of Bioinformatics and Computational Biology 5(6)

      Pages: 1103-1122

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data2007

    • Author(s)
      Nagamine, N., Sakakibara, Y.
    • Journal Title

      Bioinformatics 23(15)

      Pages: 2004-2012

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Stem Kernels for RNA Sequence Analyze2007

    • Author(s)
      Sakakibara, Y., Asai, K., Sato, K.
    • Journal Title

      Proc. 1st International Conference on Bioinformatics Research And Development

      Pages: 278-291

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Statistical prediction of protein-chemical interactions based on chemical structure and mass spectrometry data2007

    • Author(s)
      Nagamine, N. and Sakakibara, Y.
    • Journal Title

      Bioinformatics 23・15

      Pages: 2004-2012

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Stem Kernels for RNA Sequence Analyses2007

    • Author(s)
      Sakakibara, Y., Asai, K., Sato, K.
    • Journal Title

      Proc. 1st International Conference on Bioinformatics Research and Development

      Pages: 278-291

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Detection of Cis-Acting Regulatory Variation from Location Data2006

    • Author(s)
      Kawada, Y., Sakakibara, Y.
    • Journal Title

      Proceedings of the 4th Asia-Pacific Bioinformatics Conference (APBC 2006)

      Pages: 89-98

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Probabilistic Inference in Test Tube and Its Application to Gene Expression Profiles2006

    • Author(s)
      Y.Sakakibara, T.Yokomori, S.Kobayashi, A.Suyama
    • Journal Title

      Formal Models, Languages And Applications (edited by Subramanian et al.) (World Scientific Pub.)

      Pages: 304-319

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] Detection of Cis-Acting Regulatory Variation from Location Data2006

    • Author(s)
      Kawada, Y., Sakakibara, Y.
    • Journal Title

      Proceedings of the 4th Asia-Pacific Bioinformatics Conference (APBC 2006)

      Pages: 89-98

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures2005

    • Author(s)
      atsui, H., Sato, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 21(11)

      Pages: 2611-2617

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] バイオインフォマティクス概説2005

    • Author(s)
      榊原康文
    • Journal Title

      情報処理学会雑誌 46・3

      Pages: 230-238

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Identifying cooperative transcriptional regulations using protein-protein interactions2005

    • Author(s)
      Nagamine, N., Kawada, Y., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 33・15

      Pages: 4828-4837

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] バイオインフォマティクス概説2005

    • Author(s)
      榊原 康文
    • Journal Title

      情報処理学会雑誌 Vol.46,No.3

      Pages: 230-238

    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Identifying cooperative transcriptional regulations using protein-protein interactions2005

    • Author(s)
      Nagamine, N., Kawada, Y., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 33・15

      Pages: 4828-4837

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Grammatical Inference in Bioinformatics2005

    • Author(s)
      Sakakibara, Y.
    • Journal Title

      IEEE Transactions on Pattern Analysis and Machine Intelligence 27(7)

      Pages: 1051-1062

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Intensive in vitro experiments of implementing and executing finite automata in test tube2005

    • Author(s)
      J.Kuramochi, Y.Sakakibara
    • Journal Title

      Proceedings of 11th International Meeting on DNA Based Computers

      Pages: 59-67

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] RNA secondary structural alignment with conditional random fields2005

    • Author(s)
      Sato, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 21・2

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Grammatical Inference in Bioinformatics2005

    • Author(s)
      Sakakibara, Y.
    • Journal Title

      IEEE Transactions on Pattern Analysis and Machine Intelligence 27(7)

      Pages: 1051-1062

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Development of an in vivo computer based on Escherichia coli2005

    • Author(s)
      H, Nakagawa, K.Sakamoto, Y.Sakakibara
    • Journal Title

      Proceedings of 11th International Meeting on DNA Based Computers

      Pages: 68-77

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] RNA secondary structural alignment with conditional random fields2005

    • Author(s)
      Sato, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 21(2)

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Identifying cooperative transcriptional regulations using protein-protein interactions2005

    • Author(s)
      Nagamine, N., Kawada, Y., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 33(15)

      Pages: 4828-4837

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Searching biologically plausible synteny blocks among multiple genomes2005

    • Author(s)
      Sakakibara, Y.
    • Journal Title

      BIOINFO 2005 (proceedings of 2005 International Joint Conference of InCoB, AASBi and KSBI)

      Pages: 113-117

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Grammatical Inference in Bioinformatics2005

    • Author(s)
      Sakakibara, Y.
    • Journal Title

      IEEE Transactions on Pattern Analysis and Machine Intelligence 27・7

      Pages: 1051-1062

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] RNA secondary structural alignment with conditional random fields2005

    • Author(s)
      Sato, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 21(Suppl.2)

      Pages: 237-242

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] Identifying cooperative transcriptional regulations using protein-protein interactions2005

    • Author(s)
      Nagamine, N., Kawada, Y., Sakakibara, Y.
    • Journal Title

      Nucleic Acids Research 33(15)

      Pages: 4828-4837

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Grammatical Inference in Bioinformatics2005

    • Author(s)
      Sakakibara, Y.
    • Journal Title

      IEEE Transactions on Pattern Analysis and Machine Intelligence 27・7

      Pages: 1051-1062

    • Data Source
      KAKENHI-PROJECT-17018029
  • [Journal Article] RNA secondary structural alignment with conditional random fields2005

    • Author(s)
      Sato, K., Sakakibara, Y.
    • Journal Title

      Bioinformatics 21・2

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] 分子計算の理論モデル2004

    • Author(s)
      小林 聡, 榊原康文, 横森 貴
    • Journal Title

      分子コンピュータの現状と展望(萩谷編),サイエンス社

      Pages: 32-40

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] A DNA-based Computational Model using a Specific Type of Restriction Enzymes2004

    • Author(s)
      Y.Sakakibara, H.Imai
    • Journal Title

      Journal of Automata, Languages and Combinatorics 9・1

      Pages: 111-119

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] 分子コンピューティングの新しいモデル2004

    • Author(s)
      榊原康文
    • Journal Title

      分子コンピュータの現状と展望(萩谷編),サイエンス社

      Pages: 84-90

    • Data Source
      KAKENHI-PROJECT-14085205
  • [Journal Article] Genome-Wide Analyses of Cooperative Transcriptional Regulations with Context-Dependent Probabilistic Models2004

    • Author(s)
      Y.Kawada, Y.Sakakibara
    • Journal Title

      12th Inter. Conf. on Intelligent Systems for Molecular Biology and 3rd European Conf. on Computational Biology

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Genome-Wide Analyses of Cooperative Transcriptional Regulations with Context-Dependent Probabilistic Models2004

    • Author(s)
      Y.Kawada, Y.Sakakibara
    • Journal Title

      12th Inter.Conf.on Intelligent Systems for Molecular Biology and

      Pages: 106-106

    • Data Source
      KAKENHI-PROJECT-15650054
  • [Journal Article] Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures2004

    • Author(s)
      H.Matsui, K.Sato, Y.Sakakibara
    • Journal Title

      Proceedings of 3rd Computational Systems Bioinformatics Conference (CSB2004)

      Pages: 290-299

    • Description
      「研究成果報告書概要(和文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Journal Article] Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures2004

    • Author(s)
      H.Matsui, K.Sato, Y.Sakakibara
    • Journal Title

      Proceedings of 3rd Computational Systems Bioinformatics Conference

      Pages: 290-299

    • Data Source
      KAKENHI-PROJECT-15650054
  • [Journal Article] Genome-Wide Analyses of Cooperative Transcriptional Regulations with Context-Dependent Probabilistic Models2004

    • Author(s)
      Y.Kawada, Y.Sakakibara
    • Journal Title

      12th Inter. Conf. on Intelligent Systems for Molecular Biology and 3rd European Conf. on Computational Biology D-32

      Pages: 106-106

    • Description
      「研究成果報告書概要(欧文)」より
    • Data Source
      KAKENHI-PROJECT-16300095
  • [Patent] 宿主異物排除応答依存的除菌剤2015

    • Inventor(s)
      鈴木秀和、津川仁、榊原康文
    • Industrial Property Rights Holder
      鈴木秀和、津川仁、榊原康文
    • Industrial Property Rights Type
      特許
    • Filing Date
      2015-05-22
    • Data Source
      KAKENHI-PROJECT-26670065
  • [Patent] 宿主異物排除応答依存的除菌剤2014

    • Inventor(s)
      鈴木秀和、津川仁、榊原康文
    • Industrial Property Rights Holder
      鈴木秀和、津川仁、榊原康文
    • Industrial Property Rights Type
      特許
    • Filing Date
      2014-05-22
    • Data Source
      KAKENHI-PROJECT-26670065
  • [Presentation] Genomic style: a deep-learning approach to characterize bacterial genome sequences2021

    • Author(s)
      Yuka Yoshimura, Akifumi Hamada, Yohann Augey, Manato Akiyama and Yasubumi Sakakibara
    • Organizer
      2021年日本バイオインフォマティクス学会年会・ 第10回生命医薬情報学連合大会(IIBMP2021)
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] Comprehensive detection of RNA targets that bind to chemical compounds using next-generation sequencing and data-driven method2020

    • Author(s)
      H. Fujimoto, Y. Kondoh, T. Kawamura, S. Hase, M. Imoto, H. Osada, Y. Sakakibara
    • Organizer
      The 25th Annual Meeting of the RNA Society (RNA2020)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H06279
  • [Presentation] 慶應大学における医療へのAI活用の現状と動向について2019

    • Author(s)
      榊原康文
    • Organizer
      公益社団法人日本技術士会神奈川県支部 第80回CPD講座
    • Invited
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Development of meta-transcriptome analysis method and its application to meta-transcriptome map of common marmoset2019

    • Author(s)
      Uehara M, Kominato M, Hase S, Inoue T, Sasaki E, Toyoda A, Sakakibara Y
    • Organizer
      Intelligent Systems for Molecular Biology (ISMB) / International Society for Computational Biology (ISCB) 2019
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Long-read sequence data improves the contiguity of Marmoset genome2019

    • Author(s)
      Vasanthan Jayakumar,Yasubumi Sakakibara
    • Organizer
      第8回日本マーモセット研究会大会
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenomics assembly2019

    • Author(s)
      Liang KC, Sakakibara Y
    • Organizer
      International Conference on Bioinformatics (InCoB) 2019
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Development of meta-transcriptome analysis method and its application to meta-transcriptome map of common marmoset2019

    • Author(s)
      Uehara M, Kominato M, Hase S, Inoue T, Sasaki E, Toyoda A, Sakakibara Y
    • Organizer
      Intelligent Systems for Molecular Biology (ISMB) / International Society for Computational Biology (ISCB) 2019
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] 慶應大学における医療へのAI活用の現状と動向について2019

    • Author(s)
      榊原康文
    • Organizer
      公益社団法人日本技術士会神奈川県支部 第80回CPD講座
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] 人工知能を用いた化学コミュニケーション空間の多様性の解明に向けて2018

    • Author(s)
      榊原康文
    • Organizer
      日本農芸化学会2018年度大会シンポジウム
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Enhancer of Flavonoid Productionによるカルコン合成酵素の生成物特異性制御2018

    • Author(s)
      和氣駿之,大豆田亮,中野拓也,山田彩友美,寺下美穂,宇野海地,森田裕将,榊原圭子,星野敦,高橋征司,中山亨
    • Organizer
      日本農芸化学会2018年度北海道支部・東北支部合同支部大会
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] Development of meta-transcriptome analysis method and its application to meta-transcriptome map of common marmoset2018

    • Author(s)
      Mika Uehara, Minori Kominato, Sumitaka Hase, Takashi Inoue, Erika Sasaki, Yasubumi Sakakibara
    • Organizer
      6th World Congress on Targeting Microbiota
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Convolutional neural networks for classification of alignments of non-coding RNA sequences2018

    • Author(s)
      Genta Aoki and Yasubumi Sakakibara
    • Organizer
      The 26th International conference on Intelligent Systems for Molecular Biology (ISMB2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H04127
  • [Presentation] Convolutional neural networks for classification of alignments of non-coding RNA sequences2018

    • Author(s)
      Genta Aoki and Yasubumi Sakakibara
    • Organizer
      The 26th International conference on Intelligent Systems for Molecular Biology (ISMB2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Development of meta-transcriptome analysis method and its application to meta-transcriptome map of common marmoset2018

    • Author(s)
      榊原康文
    • Organizer
      第77回日本癌学会学術総会
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] Convolutional neural network based on SMILES representation of compounds for detecting chemical motif2018

    • Author(s)
      Maya Hirohara, Yutaka Saito, Yuki Koda, Kengo Sato, Yasubumi Sakakibara
    • Organizer
      The 29th International Conference on Genome Informatics (GIW 2018)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-17H06410
  • [Presentation] 化学発がんにより誘発した皮膚腫瘍におけるMeis1の転写制御2017

    • Author(s)
      吉澤康博、奥村和弘、斎藤慈、宗形春花、青戸良賢、磯貝恵理子、榊原康文、若林雄一
    • Organizer
      第30回モロシヌス研究会
    • Data Source
      KAKENHI-PROJECT-15K08438
  • [Presentation] 化学発がんにより誘発した皮膚腫瘍におけるMeis1の転写制御2017

    • Author(s)
      吉澤康博、奥村和弘、斎藤慈、宗形春花、青戸良賢、磯貝恵理子、榊原康文、若林雄一
    • Organizer
      第30回モロシヌス研究会
    • Data Source
      KAKENHI-PROJECT-15K06817
  • [Presentation] ChIP sequencingをもちいた皮膚腫瘍におけるMeis1の機能解析2016

    • Author(s)
      吉澤康博、奥村和弘、斎藤慈、宗形春花、青戸良賢、磯貝恵理子、榊原康文、若林雄一
    • Organizer
      第63回日本実験動物学会総会
    • Place of Presentation
      ミューザ川崎シンフォニーホール
    • Year and Date
      2016-05-18
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08438
  • [Presentation] ChIP sequencingにより示唆されたMeis1の皮膚腫瘍におけるグルコース代謝の制御2016

    • Author(s)
      吉澤康博、奥村和弘、斎藤慈、宗形春花、青戸良賢、磯貝恵理子、榊原康文、若林雄一
    • Organizer
      第75回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-10-06
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08438
  • [Presentation] 皮膚悪性腫瘍においてMeis1が制御する下流因子の探索2016

    • Author(s)
      吉澤康博、奥村和弘、斎藤慈、宗形春花、青戸良賢、磯貝恵理子、榊原康文、若林雄一
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-11-30
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08438
  • [Presentation] 発がん過程の継時的ゲノム解析2015

    • Author(s)
      青戸良賢, 奥村和弘, 石川冬木, 若林雄一, 榊原康文
    • Organizer
      第74回日本癌学会学術総会
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2015-10-08
    • Data Source
      KAKENHI-PROJECT-15K06817
  • [Presentation] 納豆菌ゲノムのPacBioシークエンシングと高精度配列の再決定.2015

    • Author(s)
      鎌田真由美,長谷純崇,木村啓太郎,佐藤健吾,豊田敦,藤山秋佐夫,榊原康文
    • Organizer
      第8回日本ゲノム微生物学会年会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-07
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 機械学習を用いたタンパク質とRNAのコンタクト予測2014

    • Author(s)
      佐藤健吾,柏木駿也,榊原康文
    • Organizer
      第3回生命医薬情報学連合大会,日本バイオインフォマティクス学会2014年年会
    • Place of Presentation
      仙台国際センター(宮城県・仙台市)
    • Year and Date
      2014-10-03
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] RNA-Seqを用いた肺腺がん悪性化過程のマルチオミックス解析2014

    • Author(s)
      白木澤沙衣,飯笹俊彦,横井左奈,榊原康文
    • Organizer
      第73回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2014-09-25
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] デジタルクラスタリングを用いた発がん過程の経時的トランスクリプトーム解析2013

    • Author(s)
      青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Interkinetic nuclear migration through TAG-1-assisted progenitor elongation prevents neuroepithelial overcrowding and ensures neocortical histogenesis2013

    • Author(s)
      Mayumi Okamoto, Takashi Namba, Tomoyasu Shinoda, Ken Sagou, Kanako Saito, Akira Sakakibara, Ayako Kawaguchi, Kazunori Nakajima, Masahiro Ueda, Shigeo Hayashi, Toshihiko Fujimori, Kozo Kaibuchi, and Takaki Miyata
    • Organizer
      第46回日本発生生物学会年会
    • Place of Presentation
      くにびきメッセ(島根県)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] Functional screening of the genes involved in the production of progenitor cells in the subventricular zone in mice2013

    • Author(s)
      Hidenori Tabata, Yasubumi Sakakibara, Koh-ichi Nagata, and Kazunori Nakajima
    • Organizer
      Society for Neuroscience, Neuroscience 2013 Meeting
    • Place of Presentation
      San Diego (U.S.A.)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] 発がんゲノムにおける非コードRNA の網羅的発現解析2013

    • Author(s)
      天野浩司郎,青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] デジタルクラスタリングを用いた発がん過程の経時的トランスクリプトーム解析2013

    • Author(s)
      6) 青戸良賢,八谷剛史,奥村和弘,長谷純崇,佐藤健吾,若林雄一,榊原康文
    • Organizer
      情報処理学会第33回バイオ情報学研究発表会
    • Place of Presentation
      仙台
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] ヒト膵臓がんにおける臓器内真正細菌のゲノム解析2013

    • Author(s)
      榊原康文,鈴木秀和
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] 脳室下帯分裂細胞の産生調節に関わる分子の探索(Screening of the genes involving in the production of progenitor cells in the subventricular zone)2013

    • Author(s)
      田畑秀典、榊原康文、永田浩一、仲嶋一範
    • Organizer
      第36回日本神経科学大会・第56回日本神経化学会大会・第23回日本神経回路学会大会合同大会(Neuro2013)
    • Place of Presentation
      国立京都国際会館(京都府)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] 形態依存的な神経前駆細胞の核移動は神経上皮の混雑を防ぎ、大脳組織形成を確実にする(Interkinetic nuclear migration through TAG-1 assisted progenitor elongation prevents neuroepithelial overcrowding and ensures neocortical histogenesis)2013

    • Author(s)
      岡本麻友美、難波隆志、篠田友靖、佐合健、斉藤加奈子、榊原明、川口綾乃、仲嶋一範、上田昌宏、林茂生、藤森俊彦 、貝淵弘三、宮田卓樹
    • Organizer
      第36回日本神経科学大会・第56回日本神経化学会大会・第23回日本神経回路学会大会合同大会(Neuro2013)
    • Place of Presentation
      国立京都国際会館(京都府)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] 発がんゲノムにおける非コードRNA の網羅的発現解析2013

    • Author(s)
      天野浩司郎,青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] デジタルクラスタリングを用いた発がん過程の経時的トランスクリプトーム解析2013

    • Author(s)
      青戸良賢,若林雄一,榊原康文
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] Interkinetic nuclear migration based on neuroepithelial-cell elongation ensures brain histogenesis through ‘crowd control’2013

    • Author(s)
      M.Okamoto, T.Namba, T.Shinoda, K.Sagou, K.Saito, A.Sakakibara, A.Kawaguchi, K.Nakajima, M.Ueda, S.Hayashi, T.Fujimori, K.Kaibuchi, and T.Miyata
    • Organizer
      第118回日本解剖学会総会・全国学術集会
    • Place of Presentation
      サンポートホール高松・かがわ国際会議場(香川県)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] ヒト膵臓がんにおける臓器内真正細菌のゲノム解析2013

    • Author(s)
      榊原康文,鈴木秀和
    • Organizer
      第72回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] マウス大脳皮質発生過程における脳室下帯分裂細胞の産生と維持の調節 (Regulation of the production and maintenance of the progenitors in the subventricular zone during the mouse cortical development)2012

    • Author(s)
      田畑秀典、八谷剛史、榊原康文、仲嶋一範
    • Organizer
      第35回日本神経科学大会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] Comprehensive analysis of small non-coding RNAs in medaka transcriptome by deep RNA-seq approach2011

    • Author(s)
      9) Abe, M., Hase, S., Ogawa, M., Okada, Y., Sato, K., Saito, Y., and Sakakibara, Y.
    • Organizer
      RNA 2011 Sixteenth Annual Meeting of the RNA Society,
    • Place of Presentation
      Kyoto, Japan
    • Data Source
      KAKENHI-PROJECT-23241066
  • [Presentation] 霊長類進化過程で大脳皮質発達に寄与した遺伝子の機能的、生物情報科学的探索(Functional and bioinformatic screening for the genes involved in the expansion of cerebral cortex during the primate evolution)2011

    • Author(s)
      田畑秀典、八谷剛史、榊原康文、仲嶋一範
    • Organizer
      34回日本神経科学大会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] MetaVelvet : An extension of Velvet assembler to de novo metagenome assembly from short sequence reads2011

    • Author(s)
      Namiki, T., Hachiya, T., Tanaka, H., Sakakibara, Y.
    • Organizer
      ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2011
    • Place of Presentation
      Chicago, USA
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Comprehensive analysis of small non-coding RNAs in medaka transcriptome by deep RNA-seq approach2011

    • Author(s)
      Abe, M., Hase, S., Ogawa, M., Okada, Y., Sato, K., Saito, Y., Sakakibara, Y.
    • Organizer
      RNA 2011 Sixteenth Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto, Japan
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Gradient-based optimization of hyperparamers for base-pairing profile local alignment kernels2009

    • Author(s)
      Sato, K., Saito, Y., Sakakibara, Y.
    • Organizer
      Genome Informatics
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2009-12-14
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Gradient-based optimization of hyperparamers for base-pairing profile localalignment kernels2009

    • Author(s)
      Sato, K., Saito, Y., Sakakibara, Y.
    • Organizer
      Genome Informatics
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-14
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] A non-parametric Bayesian approach for predicting RNA secondary structures2009

    • Author(s)
      Sato, K., Hamada, M., Mituyama, T., Asai, K., Sakakibara, Y.
    • Organizer
      Proceedings of 9th Workshop on Algorithms in Bioinformatics (WABI 2009)
    • Place of Presentation
      Philadelphia, USA
    • Year and Date
      2009-09-12
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] A non-parametric Bayesian approach for predicting RNA secondarystructures2009

    • Author(s)
      Sato, K., Hamada, M., Mituyama, T., Asai, K., Sakakibara, Y.
    • Organizer
      Proceedings of 9th Workshop on Algorithms in Bioinformatics (WABI 2009)
    • Place of Presentation
      フィラデルフィア,米国
    • Year and Date
      2009-09-12
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Detection of Secondary-Structure Conserved Regions by Genome Comparison2008

    • Author(s)
      Saito, Y., Sato, K., Sakakibara, Y.
    • Organizer
      The 2008 Annual Conference of Japanese Society for Bioinformatics (JSBi 2008)
    • Place of Presentation
      Osaka, Japan(口頭発表)
    • Year and Date
      2008-12-16
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Detection of secondary-structure conserved regions by genome comparison2008

    • Author(s)
      Y. Saito, K Sato, and Y. Sakakibara
    • Organizer
      The 2008 Annual Conference of Japanese Soci etv for Bioinformatics (JSBi 2008)
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      2008-12-15
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] OSfinder: an accurate orthology mapping program and its application to placental mammalian genomes2007

    • Author(s)
      Hachiya, T., Osana, Y., Popendorf, K., Sakakibara, Y.
    • Organizer
      Proc. 2007 Annual Conference of Japanese Society for Bioinformatics (JSBi 2007)
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2007-12-18
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Osfinder: an accurate orthology mapping program and its application to placental mammalian genomes2007

    • Author(s)
      Hachiya, T., Osana, Y., Popendorf, K., and Sakakibara, Y.
    • Organizer
      2007 Annual Conference of Japanese Society for Bioinformatics (JSBi 2007)
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2007-12-18
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Stem Kernels for RNA Sequence Analyses2007

    • Author(s)
      Sakakibara, Y., Asai, K., Sato, K.
    • Organizer
      Proc. 1st International Conference on Bioinformatics Research and Development
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2007-03-13
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Detection of Cis-Acting Regulatory Variation from Location Data2006

    • Author(s)
      Kawada, Y., Sakakibara, Y.
    • Organizer
      Proceedings of the 4th Asia-Pacific Bioinformatics Conference (APBC 2006)
    • Place of Presentation
      Taiwan, China
    • Year and Date
      2006-02-14
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Searching biologically plausible synteny blocks among multiple genomes2005

    • Author(s)
      Hachiya, T., Sakakibara, Y.
    • Organizer
      BIOINFO 2005 (proceedings of 2005 International Joint Conference of InCoB, AASBi and KSBI)
    • Place of Presentation
      Busan, Korea
    • Year and Date
      2005-09-22
    • Data Source
      KAKENHI-PROJECT-17018029
  • [Presentation] Histological organization of mouse and primate subventricular zone in the developing cerebral neocortex

    • Author(s)
      Hidenori Tabata, Satoshi Yoshinaga, Yasubumi Sakakibara, Koh-ichi Nagata, Kazunori Nakajima
    • Organizer
      Neuro2013 Satellite Symposium “Molecular & Cellular Mechanisms of Brain Development & Evolution”
    • Place of Presentation
      京都府立医科大学(京都府)
    • Data Source
      KAKENHI-PROJECT-22240041
  • [Presentation] Screening for candidate genes involved in the production of mouse subventricular zone proliferative cells and an estimation of their changes in evolutionary pressure during primate evolution.

    • Author(s)
      田畑秀典、八谷剛史、永田浩一、榊原康文、仲嶋一範
    • Organizer
      日本バイオインフォマティクス学会2013年年会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Data Source
      KAKENHI-PROJECT-22240041
  • 1.  WAKABAYASHI Yuichi (40303119)
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    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 150.  白須 賢
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 151.  松永 幸大
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 152.  後飯塚 僚
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 153.  中村 卓郎
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 154.  阿久津 達也
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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