Habu Yoshiki 土生芳樹

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HABU Yoshiki 土生芳樹

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Researcher Number	80266915
Other IDs
Affiliation (Current)	2025: 国立研究開発法人農業・食品産業技術総合研究機構, 生物機能利用研究部門, 研究領域長
Affiliation (based on the past Project Information) *help	2015: 国立研究開発法人農業生物資源研究所, ゲノム機能改変研究ユニット, 上級研究員 2015: 国立研究開発法人農業生物資源研究所, ゲノム機能改変研究ユニット, 主任研究員 2014: 独立行政法人農業生物資源研究所, ゲノム機能改変研究ユニット, 主任研究員 2014: 独立行政法人農業生物資源研究所, 農業先端ゲノム研究センター, 主任研究員 2013: 独立行政法人農業生物資源研究所, ゲノム機能改変研究ユニット, 研究員 … More 2012: 独立行政法人農業生物資源研究所, その他部局等, 研究員 2011: 独立行政法人農業生物資源研究所, ゲノム機能改変研究ユニット, 主任研究員 2009 – 2010: National Institute of Agrobiological Sciences, 遺伝子組換え技術研究ユニット, 主任研究員 1998: 岡崎共同研究機構, 基礎生物学研究所, 助手 1996 – 1997: 岡崎国立共同研究機構, 基礎生物学研究所, 助手 Less
Review Section/Research Field	Principal Investigator 遺伝 / Science in genetics and breeding / Breeding science / Genetics/Genome dynamics Except Principal Investigator 植物生理 / Plant molecular biology/Plant physiology
Keywords	Principal Investigator トランスポゾン / エピゲノム / イネ / 減数分裂期組み換え / メチル化 / ゲノム改変 / 環境ストレス / Morpheus'Molecule 1 / 小分子RNA / Morpheus' Molecule 1 … More / ヒストンメチル化 / DNAメチル化 / エピジェネティクス / MORPHEUS' MOLECULE1 / シロイヌナズナ / シトシンメチル化 / 反復配列 / サイレンシング / AFLP / マルバアサガオ / キメラ斑 … More Except Principal Investigator アサガオ / 色素生合成系遺伝子 / アントシアニン / 花の絞り模様 / トランスポゾン / transgenic rice plant / the common moring glory / the Japanese morning glory / anthocyanin biosynthesis gene / anthocyanin pigmentation / flower variegation / mutable allele / transposable element / トランスジェニックイネ / 転移 / 高等植物 / イネ / マルバアサガオ / 易変性変異 / RNA干渉 / 栄養欠乏ストレス / DCL4 / DCL3 / 基質特異性 / 小分子ＲＮＡ / ２本鎖ＲＮＡ / ＤＣＬ４ / ＤＣＬ３ / シロイヌナズナ / ダイサー / 吹掛け絞り変異 / 不安定変異 / 可動遺伝因子 Less

Genomic and epigenomic characteristics of meiotic recombination sites in ricePrincipal Investigator
- Principal Investigator
  
  Habu Yoshiki
- Project Period (FY)
  2015
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Science in genetics and breeding
- Research Institution
  国立研究開発法人農業生物資源研究所
Enzymatic properties and functional divergence of plant Dicers
- Principal Investigator
  
  FUKUHARA Toshiyuki
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Plant molecular biology/Plant physiology
- Research Institution
  Tokyo University of Agriculture and Technology
Intrinsic mechanisms against environmental stress in plants by rewriting genome sequencesPrincipal Investigator
- Principal Investigator
  
  HABU Yoshiki
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Breeding science
- Research Institution
  National Institute of Agrobiological Sciences
Silencing mechanisms of plant heterochromatin regionsPrincipal Investigator
- Principal Investigator
  
  HABU Yoshiki
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  National Institute of Agrobiological Sciences
高等植物におけるDNA型トランスポゾンの転移機構Principal Investigator
- Principal Investigator
  
  土生芳樹
- Project Period (FY)
  1998
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  遺伝
- Research Institution
  Okazaki National Research Institutes
可動遺伝因子による高等植物の不安定変異の解析
- Principal Investigator
  
  IIDA Shigeru
- Project Period (FY)
  1997
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Okazaki National Research Institutes
マルバアサガオの花と葉におけるキメラ斑の形成機構Principal Investigator
- Principal Investigator
  
  土生芳樹
- Project Period (FY)
  1996
- Research Category
  
  Grant-in-Aid for Encouragement of Young Scientists (A)
- Research Field
  
  遺伝
- Research Institution
  Okazaki National Research Institutes
Identification of new transposable elements in the mutable alleles for flower variegation in the Japanese and common morning glories and transposition of the maize Ac/Ds elements in transgenic rice plants.
- Principal Investigator
  
  IIDA Shigeru
- Project Period (FY)
  1996 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  植物生理
- Research Institution
  Okazaki National Research Institutes

All 2015 2014 2013 2012 2011 2010 2009 Other

All Journal Article Presentation Book

[Book] Mechanisms linking cytosine methylation to histone modification in Arabidopsis thaliana. In : Noncoding RNAs in plants2011
- Author(s)
  Arita K, Kanno T, Yoshikawa M, Habu Y
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice.2015
- Author(s)
  Numa H, Yamaguchi K, Shigenobu S, Habu Y
- Journal Title
  
  Molecular Plant
  
  Volume: 8 Issue: 10 Pages: 1560-1562
- DOI
  10.1016/j.molp.2015.08.002
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15K14633
[Journal Article] Epigenomic modification in rice controls meiotic recombination and segregation distortion2015
- Author(s)
  Habu Y, Ando T, Ito S, Nagaki K, Kishimoto N, Taguchi-Shiobara F, Numa H, Yamaguchi K, Shigenobu S, Murata M, Meshi T, Yano M
- Journal Title
  
  Molecular Breeding
  
  Volume: 35 Issue: 4 Pages: 103-103
- DOI
  10.1007/s11032-015-0299-0
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24580016
[Journal Article] Does the upstream region possessing MULE-like sequence in rice upregulate PsbS1 gene expression?2014
- Author(s)
  Nuruzzaman M, Kanno T, Amada R, Habu Y, Kasajima I, Ishikawa T, Kawai-Yamada M, Uchimiya H
- Journal Title
  
  PLoS ONE
  
  Volume: 9 Issue: 9 Pages: e102742-e102742
- DOI
  10.1371/journal.pone.0102742
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24580016
[Journal Article] 3’ fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS32013
- Author(s)
  Manabu Yoshikawa
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 110 Issue: 10 Pages: 4117-4122
- DOI
  10.1073/pnas.1217050110
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24248010, KAKENHI-PROJECT-24580016, KAKENHI-PUBLICLY-24114506
[Journal Article] Locus-specific requirements of DDR complexes for gene-body methylation of TAS genes in Arabidopsis thaliana2013
- Author(s)
  Kanno T, Yoshikawa M, Habu Y
- Journal Title
  
  Plant Molecular Biology Reporter
  
  Volume: 31 Issue: 4 Pages: 1048-1052
- DOI
  10.1007/s11105-012-0554-z
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24580016
[Journal Article] RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation2013
- Author(s)
  Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S
- Journal Title
  
  The Plant Cell
  
  Volume: 25 Issue: 5 Pages: 1709-1725
- DOI
  10.1105/tpc.113.112052
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24580016, KAKENHI-PROJECT-24580493
[Journal Article] エピミュータジェネシスと次世代育種への展開2013
- Author(s)
  前川雅彦, 金澤章, 堤伸浩, 木下哲, 土生芳樹, 柴博史, 江面浩
- Journal Title
  
  育種学研究
  
  Volume: 15 Pages: 42-50
- NAID
  10031173700
- Data Source
  KAKENHI-PROJECT-24580016
[Journal Article] Tandemly arranged chalcone synthase A genes contribute to the spatially regulated expression of siRNA and the natural bicolor phenotype in Petunia hybrida2012
- Author(s)
  Morita Y, Saito R, Ban Y, Tanikawa N, Kuchitsu K, Ando T, Yoshikawa Ma, Habu Y, Ozeki Y, Nakayama M
- Journal Title
  
  Plant J
  
  Volume: 70 Pages: 739-749
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa).2012
- Author(s)
  Higo H, Tahir M, Takashima K, Miura A, Watanabe K, Tagiri A, Ugaki M, Ishikawa R, Eiguchi M, Kurata N, Sasaki T, Richards E, Takano M, Kishimoto N, Kakutani T, Habu Y
- Journal Title
  
  Molecular Genetics and Genomics
  
  Volume: 287(20) Issue: 10 Pages: 785-792
- DOI
  10.1007/s00438-012-0717-5
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24580016
[Journal Article] siRNA-mediated chromatin maintenance and its function in Arabidopsis thaliana2011
- Author(s)
  Kanno T, Habu Y
- Journal Title
  
  Biochim Biophys Acta-Gene Regulatory Mechanisms
  
  Volume: 1809 Pages: 444-451
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] 植物におけるRNAサイレンシング機構:転写後型ジーンサイレンシング(PTGS)と転写型ジーンサイレンシング(TGS)2011
- Author(s)
  吉川学,菅野達夫,土生芳樹
- Journal Title
  
  細胞工学
  
  Pages: 706-711
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] siRNA-mediated chromatin maintenance and its function in Arabidopsis thaliana2011
- Author(s)
  Tatsuo Kanno, Yoshki Habu
- Journal Title
  
  Biochim Biophys Acta
  
  Volume: 1809 Issue: 8 Pages: 444-451
- DOI
  10.1016/j.bbagrm.2011.05.002
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana2010
- Author(s)
  Numa H, Kim J-M, Matsui A, Kurihara Y, Morosawa T, Ishida J, Mochizuki Y, Kimura H, Shinozaki K, Toyoda T, Seki M, Yoshikawa M, Habu Y
- Journal Title
  
  EMBO J
  
  Volume: 29 Pages: 352-362
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Epigenetic silencing of endogenous repetitive sequences by MORPHEUS' MOLECULE1 in Arabidopsis thaliana.2010
- Author(s)
  土生芳樹
- Journal Title
  
  Epigenetics
  
  Volume: 5 Pages: 562-565
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Locus-specific dependency of endogenous silent loci on MOM1 and non-CG methylation in Arabidopsis thaliana.2010
- Author(s)
  土生芳樹, 他
- Journal Title
  
  Plant Signaling & Behavior
  
  Volume: 5 Pages: 724-726
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Locus-specific dependency of endogenous silent loci on MOM1 and non-CG methylation in Arabidopsis thaliana2010
- Author(s)
  Habu Y, Yoshikawa M
- Journal Title
  
  Plant Signal Behav
  
  Volume: 5 Pages: 724-726
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21570008
[Journal Article] Epigenetic silencing of endogenous repetitive sequences by MORPHEUS' MOLECULE1 in Arabidopsis thaliana2010
- Author(s)
  Habu Y
- Journal Title
  
  Epigenetics
  
  Volume: 5 Pages: 562-565
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] イネの脱分化・再分化過程におけるトランスポゾンの活性制御2015
- Author(s)
  土生芳樹
- Organizer
  国立遺伝学研究所研究集会「転移因子と宿主の相互作用による生命進化」
- Place of Presentation
  三島
- Year and Date
  2015-02-27
- Invited
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] TALEN による標的変異がDNA メチル化状態へ及ぼす影響の解析2015
- Author(s)
  賀屋秀隆，沼寿隆，横井彩子，小川大輔，土岐精一，土生芳樹
- Organizer
  日本育種学会　第128回講演会
- Place of Presentation
  新潟大学
- Year and Date
  2015-09-12
- Data Source
  KAKENHI-PROJECT-15K14633
[Presentation] イネの脱分化・再分化過程および低メチル化系統における活性トランスポゾンの状態解析2014
- Author(s)
  土生芳樹, 雑賀啓明, 沼寿隆
- Organizer
  日本育種学会第126回講演会
- Place of Presentation
  都城
- Year and Date
  2014-09-26
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] 転移活性をもつトランスポゾンの探索法を考える2014
- Author(s)
  深井英吾, 土生芳樹
- Organizer
  日本育種学会第126回講演会
- Place of Presentation
  都城
- Year and Date
  2014-09-26
- Invited
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] シロイヌナズナTAS遺伝子領域に見られるDNAのメチル化に関与するタンパク因子の解析2012
- Author(s)
  菅野達夫, 不動寺晶子, 保坂アエニ, 吉川学, 土生芳樹
- Organizer
  第35回日本分子生物学会年会
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] 表現型変化に依らないイネの活性トランスポゾン探索2012
- Author(s)
  土生芳樹
- Organizer
  イネ遺伝学・分子生物学ワークショップ2012
- Place of Presentation
  奈良
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] SGS3による切断RNA-RISC複合体の安定化2012
- Author(s)
  吉川学, 井木太一郎, 土生芳樹, 石川雅之
- Organizer
  第14回日本RNA学会年会
- Place of Presentation
  仙台
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] エピゲノム操作の作物育種への応用2012
- Author(s)
  土生芳樹
- Organizer
  日本育種学会平成24年度秋季大会
- Place of Presentation
  京都
- Invited
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] クロマチン修飾を介した植物のゲノム組成改変2011
- Author(s)
  土生芳樹
- Organizer
  第17回植物バイテクシンポジウム「エピゲノム研究の展開と植物科学」
- Place of Presentation
  京都府立大学
- Year and Date
  2011-01-27
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] クロマチン修飾を介した植物のゲノム組成改変2011
- Author(s)
  土生芳樹
- Organizer
  第17回京都府立大学植物バイテクシンポジウム「エピゲノム研究の展開と植物科学」
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] 育種におけるクロマチン修飾:減数分裂期組み換えとのかかわり日本育種学会シンポジウム「RNAサイレンシング研究の新展開とその育種的利用に向けた展望」2009
- Author(s)
  土生芳樹
- Organizer
  日本育種学会2009年秋季大会
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] シロイヌナズナのサイレンシング因子Morpheus' Molecule 1 (MOM1)による内在性領域不活性化機構の解析2009
- Author(s)
  土生芳樹, 他
- Organizer
  日本遺伝学会第81回大会
- Place of Presentation
  信州大学理学部
- Year and Date
  2009-09-16
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] ゲノムタイリングアレイが拓くヘテロクロマチンサイレンシングの新局面日本植物生理学会シンポジウム「植物科学におけるタイリングアレイと次世代シーケンサーの利用」2009
- Author(s)
  土生芳樹
- Organizer
  第50回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-21570008
[Presentation] Genome-wide methylation profile of DECREASE IN DNA METHYLATION1 (DDM1) knockdown in rice
- Author(s)
  Habu Y
- Organizer
  Translational Cereal Genomics
- Place of Presentation
  ウイーン
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] イネ低メチル化系統における活性トランスポゾンの探索
- Author(s)
  沼寿隆, 山口勝司, 重信秀治, 土生芳樹
- Organizer
  日本育種学会
- Place of Presentation
  鹿児島
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] A rice DDM1-deficient line: similarities and differences with ddm1 in Arabidopsis thaliana
- Author(s)
  Numa H, Yamaguchi K, Shigenobu S, Habu Y
- Organizer
  第55回日本植物生理学会年会
- Place of Presentation
  富山
- Invited
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] シロイヌナズナにおけるRNA scilencingを介した遺伝子発現抑制機構の解析
- Author(s)
  菅野達夫, 吉川学, 土生芳樹
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸
- Invited
- Data Source
  KAKENHI-PROJECT-24580016
[Presentation] Genome-wide methylation profile of DECREASE IN DNA METHYLATION1 (DDM1) knockdown in rice
- Author(s)
  Habu Y, Numa H, Yamaguchi K, Shigenobu S
- Organizer
  11th International Symposium on Rice Functional Genomics
- Place of Presentation
  ニューデリー
- Data Source
  KAKENHI-PROJECT-24580016

1. IIDA Shigeru (30012777)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
2. FUKUHARA Toshiyuki (90228924)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. YOSHIKAWA Manabu (80391564)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
4. ISHII Kazuo (60449238)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. ISHIKAWA Hideaki (80625715)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. IZUMIKAWA Keiichi (60625713)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. KOZAKI Toshinori (60442828)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. NAGANO Hideaki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. SETA Atsushi

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Habu Yoshiki 土生 芳樹

HABU Yoshiki 土生 芳樹

Research Projects

Research Products

Co-Researchers

Genomic and epigenomic characteristics of meiotic recombination sites in ricePrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Enzymatic properties and functional divergence of plant Dicers

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Intrinsic mechanisms against environmental stress in plants by rewriting genome sequencesPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Silencing mechanisms of plant heterochromatin regionsPrincipal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

高等植物におけるDNA型トランスポゾンの転移機構Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

可動遺伝因子による高等植物の不安定変異の解析

Principal Investigator

Project Period (FY)

Research Category

Research Institution

マルバアサガオの花と葉におけるキメラ斑の形成機構Principal Investigator

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

Identification of new transposable elements in the mutable alleles for flower variegation in the Japanese and common morning glories and transposition of the maize Ac/Ds elements in transgenic rice plants.

Principal Investigator

Project Period (FY)

Research Category

Research Field

Research Institution

[Book] Mechanisms linking cytosine methylation to histone modification in Arabidopsis thaliana. In : Noncoding RNAs in plants2011

Author(s)

Publisher

Data Source

[Journal Article] Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice.2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Epigenomic modification in rice controls meiotic recombination and segregation distortion2015

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Does the upstream region possessing MULE-like sequence in rice upregulate PsbS1 gene expression?2014

Author(s)

Journal Title

DOI

Data Source

[Journal Article] 3’ fragment of miR173-programmed RISC-cleaved RNA is protected from degradation in a complex with RISC and SGS32013

Author(s)

Journal Title

DOI

Data Source

[Journal Article] Locus-specific requirements of DDR complexes for gene-body methylation of TAS genes in Arabidopsis thaliana2013

Author(s)

Journal Title

DOI

Habu Yoshiki 土生芳樹

HABU Yoshiki 土生芳樹