FUKUSHIMA Atsushi 福島敦史

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HUKUSHIMA Atsushi 福島敦史

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Researcher Number	80415281
Other IDs
Affiliation (Current)	2025: 京都府立大学, 生命環境科学研究科, 教授
Affiliation (based on the past Project Information) *help	2021 – 2024: 京都府立大学, 生命環境科学研究科, 教授 2020 – 2021: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 上級研究員 2015 – 2019: 国立研究開発法人理化学研究所, 環境資源科学研究センター, 研究員 2014: 独立行政法人理化学研究所, 環境資源科学研究センター, 研究員 2012: 独立行政法人理化学研究所, メタボローム情報チーム, 研究員 2011: 独立行政法人理化学研究所, メタボローム情報ユニット, 研究員
Review Section/Research Field	Principal Investigator Horticultural science / Basic Section 39020:Crop production science-related / Basic Section 39030:Horticultural science-related / Bioinformatics/Life informatics Except Principal Investigator Basic Section 38010:Plant nutrition and soil science-related / Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields / Basic Section 37020:Chemistry and chemical methodology of biomolecules-related / Basic Section 50010:Tumor biology-related / Science and Engineering
Keywords	Principal Investigator バイオインフォマティクス / トランスクリプトーム / 共発現解析 / データ統合 / 遺伝子共発現 / メタボローム / 遺伝子機能 / 機械学習 / 共発現ネットワーク解析 / バイオイフォマティクス … More / 園芸ゲノム科学・バイオインフォマティクス / 園芸ゲノム科学 / 統合データベース / トマト / ネットワーク推定 / ディファレンシャル共発現 / 遺伝子発現調節ネットワーク / ネットワーク解析 / 共発現差異 / マイクロアレイ / differential correlation / データ正規化 / トランスクリプトミクス … More Except Principal Investigator メタボローム / メタボロミクス / 生長制御 / micro RNA / オミックス / イネ / メチル化 / サクラクローン品種 / サクラ属 / DNAメチル化 / クローン品種 / サクラ / エピゲノム / LED / 二次代謝 / 一次代謝 / 機械学習 / 量子化学 / UVスペクトル / アントシアニン / 分子軌道計算 / 二次代謝物 / シロイヌナズナ / 植物 / 量子化学計算 / 悪性化 / がん / がん悪性化 / 口腔上皮がん / Galectin4 / 細胞接着 / 細胞移動能 / SLPI / アルカロイド / トランスクリプトミクス / 統合オミクス / 植物二次代謝 / 生合成 Less

数理情報科学とメタボローム解析による作物―環境間相互作用シグナル因子の同定Principal Investigator
- Principal Investigator
  
  福島敦史
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39020:Crop production science-related
- Research Institution
  Kyoto Prefectural University
microRNA nexus contributing rice shoot growth during seedling stages
- Principal Investigator
  
  草野都
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38010:Plant nutrition and soil science-related
- Research Institution
  University of Tsukuba
Development and application of integrative learning algorithms for gene function prediction in plantsPrincipal Investigator
- Principal Investigator
  
  Atsushi Fukushima
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 39030:Horticultural science-related
- Research Institution
  Kyoto Prefectural University
  Institute of Physical and Chemical Research
Tree age estimation by metabolic epigenomics in clonal cultiver Cerasus as a model
- Principal Investigator
  
  Matsumoto Asako
- Project Period (FY)
  2020 – 2023
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 40:Forestry and forest products science, applied aquatic science, and related fields
- Research Institution
  Forest Research and Management Organization
Digital chemical mapping by treatment of narrow-band LED light in the plant metabolome
- Principal Investigator
  
  Kusano Miyako
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 37020:Chemistry and chemical methodology of biomolecules-related
- Research Institution
  University of Tsukuba
Study of the mechanism underlying secretory leukocyte protease inhibitor (SLPI)-induced malignancy of cancer
- Principal Investigator
  
  Mikami Yoshikazu
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 50010:Tumor biology-related
- Research Institution
  Niigata University
Development of gene-function prediction models with highly predictive and sustainable construction by integrated network analysisPrincipal Investigator
- Principal Investigator
  
  Fukushima Atsushi
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Horticultural science
- Research Institution
  Institute of Physical and Chemical Research
in silico prediction of gene function associated with agronomically useful traits in crops using differential network analysisPrincipal Investigator
- Principal Investigator
  
  Fukushima Atsushi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Horticultural science
- Research Institution
  Institute of Physical and Chemical Research
Development of a novel integrated data mining that facilitates functional analysis in the post-genomic era -- Exploring novel gene coexpression --Principal Investigator
- Principal Investigator
  
  HUKUSHIMA Atsushi
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The Institute of Physical and Chemical Research
Metabolomics-assisted genome mining for biosynthesis of plant metabolites
- Principal Investigator
  
  SAITO Kazuki
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Chiba University

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 Other

All Journal Article Presentation Book

[Book] Chapter "Plant Metabolomics: The Great Potential of Plant Metabolomics in Big Data Biology" in Plant Omics Advances in Big Data Biology (Edited by (Hajime Ohyanagi, Kentaro Yano, Eiji Yamamoto, Ai Kitazumi)2022
- Author(s)
  Miyako Kusano, Atsushi Fukushima
- Total Pages
  17
- Publisher
  CABI
- ISBN
  9781789247510
- Data Source
  KAKENHI-PROJECT-20K06043
[Book] Chapter 1 "Using the DiffCorr Package to Analyze and Visualize Differential Correlations in Biological Networks" In: Dehmer, Shi, Emmert-Streib, editors. Computational Network Analysis with R - Applications in Biology, Medicine and Chemistry2016
- Author(s)
  Atsushi Fukushima and Kozo Nishida
- Total Pages
  34
- Publisher
  Wiley
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] Transcriptomic, Hormonomic and Metabolomic Analyses Highlighted the Common Modules Related to Photosynthesis, Sugar Metabolism and Cell Division in Parthenocarpic Tomato Fruits during Early Fruit Set2022
- Author(s)
  Kusano Miyako、Worarad Kanjana、Fukushima Atsushi et al.
- Journal Title
  
  Cells
  
  Volume: 11 Issue: 9 Pages: 1420-1420
- DOI
  10.3390/cells11091420
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06043
[Journal Article] Maize specialized metabolome networks reveal organ-preferential mixed glycosides2021
- Author(s)
  Desmet Sandrien、Saeys Yvan、Verstaen Kevin、Dauwe Rebecca、Kim Hoon、Niculaes Claudiu、Fukushima Atsushi、Goeminne Geert、Vanholme Ruben、Ralph John、Boerjan Wout、Morreel Kris
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 19 Pages: 1127-1144
- DOI
  10.1016/j.csbj.2021.01.004
- Data Source
  KAKENHI-PROJECT-20K06043
[Journal Article] Development of RIKEN Plant Metabolome MetaDatabase2021
- Author(s)
  Fukushima Atsushi、Takahashi Mikiko、Nagasaki Hideki、Aono Yusuke、Kobayashi Makoto、Kusano Miyako、Saito Kazuki、Kobayashi Norio、Arita Masanori
- Journal Title
  
  Plant and Cell Physiology
  
  Volume: 63 Issue: 3 Pages: 433-440
- DOI
  10.1093/pcp/pcab173
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06043
[Journal Article] Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in <i>Arabidopsis</i>2021
- Author(s)
  Abdelrahman Mostafa、Nishiyama Rie、Tran Cuong Duy、Kusano Miyako、Nakabayashi Ryo、Okazaki Yozo、Matsuda Fumio、Ch?vez Montes Ricardo A.、Mostofa Mohammad Golam、Li Weiqiang、Watanabe Yasuko、Fukushima Atsushi、Tanaka Maho、Seki Motoaki、Saito Kazuki、Herrera-Estrella Luis、Tran Lam-Son Phan
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 118 Issue: 48
- DOI
  10.1073/pnas.2105021118
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06043
[Journal Article] Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress2020
- Author(s)
  Fukushima Atsushi、Kuroha Takeshi、Nagai Keisuke、Hattori Yoko、Kobayashi Makoto、Nishizawa Tomoko、Kojima Mikiko、Utsumi Yoshinori、Oikawa Akira、Seki Motoaki、Sakakibara Hitoshi、Saito Kazuki、Ashikari Motoyuki、Kusano Miyako
- Journal Title
  
  Metabolites
  
  Volume: 10 Issue: 2 Pages: 68-68
- DOI
  10.3390/metabo10020068
- NAID
  120007132876
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K06274, KAKENHI-PROJECT-19K15815, KAKENHI-PROJECT-17K07663
[Journal Article] Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots2020
- Author(s)
  Kusano Miyako、Fukushima Atsushi、Tabuchi-Kobayashi Mayumi、Funayama Kazuhiro、Kojima Soichi、Maruyama Kyonoshin、Yamamoto Yoshiharu Y.、Nishizawa Tomoko、Kobayashi Makoto、Wakazaki Mayumi、Sato Mayuko、Toyooka Kiminori、Osanai-Kondo Kumiko、Utsumi Yoshinori、Seki Motoaki、Fukai Chihaya、Saito Kazuki、Yamaya Tomoyuki
- Journal Title
  
  Plant Physiology
  
  Volume: 182 Issue: 4 Pages: 1894-1909
- DOI
  10.1104/pp.19.01118
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07477, KAKENHI-PROJECT-17K07663
[Journal Article] Integrative omics approaches revealed a crosstalk among phytohormones during tuberous root development in cassava2020
- Author(s)
  Utsumi Yoshinori、Tanaka Maho、Utsumi Chikako、Takahashi Satoshi、Matsui Akihiro、Fukushima Atsushi、Kobayashi Makoto、Sasaki Ryosuke、Oikawa Akira、Kusano Miyako、Saito Kazuki、Kojima Mikiko、Sakakibara Hitoshi、Sojikul Punchapat、Narangajavana Jarunya、Seki Motoaki
- Journal Title
  
  Plant Molecular Biology
  
  Volume: - Issue: 3 Pages: 249-269
- DOI
  10.1007/s11103-020-01033-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06043
[Journal Article] Comparative co-expression network analysis extracts the <i>SlHSP70</i> gene affecting to shoot elongation of tomato2019
- Author(s)
  Vu Nam Tuan、Kamiya Ken、Fukushima Atsushi、Hao Shuhei、Ning Wang、Ariizumi Tohru、Ezura Hiroshi、Kusano Miyako
- Journal Title
  
  Plant Biotechnology
  
  Volume: 36 Issue: 3 Pages: 143-153
- DOI
  10.5511/plantbiotechnology.19.0603a
- NAID
  130007724757
- ISSN
  1342-4580, 1347-6114
- Year and Date
  2019-09-25
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] メタボロームデータ解析および解釈に資する可視化手法2019
- Author(s)
  神谷健、草野都、福島敦史
- Journal Title
  
  CICSJ Bulletin
  
  Volume: 37 Issue: 3 Pages: 72
- DOI
  10.11546/cicsj.37.72
- NAID
  130007753679
- ISSN
  0913-3747, 1347-2283
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-19K05711, KAKENHI-PROJECT-17K07663
[Journal Article] Application of Quantum Chemical Calculation for Prediction of Ultraviolet-vis Spectrum of Plant Self-protective MetabolitesProduced by UV-B Irradiation2019
- Author(s)
  KUWAHATA Kazuaki、SAKUMA Yui、KAWASHIMA Yukio、FUKUSHIMA Atsushi、NAGASHIMA Umpei、KUSANO Miyako、TACHIKAWA Masanori
- Journal Title
  
  J. Comput. Chem. Jpn.
  
  Volume: 18 Issue: 2 Pages: 108-114
- DOI
  10.2477/jccj.2019-0002
- NAID
  130007684613
- ISSN
  1347-1767, 1347-3824
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K05711, KAKENHI-PROJECT-17K07663
[Journal Article] HEAT INDUCIBLE LIPASE1 Remodels Chloroplastic Monogalactosyldiacylglycerol by Liberating α-Linolenic Acid in Arabidopsis Leaves under Heat Stress2018
- Author(s)
  Yasuhiro Higashi, Yozo Okazaki, Kouji Takano, Fumiyoshi Myouga, Kazuo Shinozaki, Eva Knoch, Atsushi Fukushima, Kazuki Saito
- Journal Title
  
  Plant Cell
  
  Volume: 30 Issue: 8 Pages: 1887-1905
- DOI
  10.1105/tpc.18.00347
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] High Impact Gene Discovery: Simple Strand-Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-Expression Network2018
- Author(s)
  Yasunori Ichihashi, Atsushi Fukushima, Arisa Shibata, Ken Shirasu
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 1830 Pages: 163-189
- DOI
  10.1007/978-1-4939-8657-6_11
- ISBN
  9781493986569, 9781493986576
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663, KAKENHI-ORGANIZER-15H05955, KAKENHI-PLANNED-15H05959, KAKENHI-PROJECT-17H06172
[Journal Article] High Impact Gene Discovery: Simple Strand Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-expression Network2018
- Author(s)
  Yasunori Ichihashi, Atsushi Fukushima, Arisa Shibata, Ken Shirasu
- Journal Title
  
  Methods in Molecular Biology
  
  Volume: 印刷中
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] Third DWF1 paralog in Solanaceae, sterol Δ24-isomerase, branches withanolide biosynthesis from the general phytosterol pathway2018
- Author(s)
  Eva Knoch, Satoko Sugawara, Tetsuya Mori, Christian Poulsen, Atsushi Fukushima, Jesper Harholt, Yoshinori Fujimoto, Naoyuki Umemoto, Kazuki Saito
- Journal Title
  
  Proceedings of the National Academy of Sciences of the United States of America
  
  Volume: 115 Issue: 34
- DOI
  10.1073/pnas.1807482115
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07663, KAKENHI-PROJECT-17F17749
[Journal Article] Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs2018
- Author(s)
  Kazuyoshi Kitazaki, Atsushi Fukushima, Ryo Nakabayashi, Yozo Okazaki, Makoto Kobayashi, Tetsuya Mori, Tomoko Nishizawa, Sebastian Reyes-Chin-Wo, Richard W. Michelmore, Kazuki Saito, Kazuhiro Shoji, Miyako Kusano
- Journal Title
  
  Scientific Reports
  
  Volume: 印刷中
- NAID
  120007134064
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] A Systems Analysis With “Simplified Source-Sink Model” Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Treatments2018
- Author(s)
  Atsushi Fukushima, Shoko Hikosaka, Makoto Kobayashi, Tomoko Nishizawa, Kazuki Saito, Eiji Goto, Miyako Kusano
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 9 Pages: 1439-1439
- DOI
  10.3389/fpls.2018.01439
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] Effects of Combined Low Glutathione with Mild Oxidative and Low Phosphorus Stress on the Metabolism of Arabidopsis thaliana2017
- Author(s)
  3.Atsushi Fukushima, Mami Iwasa, Ryo Nakabayashi, Makoto Kobayashi, Tomoko Nishizawa, Yozo Okazaki, Kazuki Saito, Miyako Kusano
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 8 Pages: 1464-1464
- DOI
  10.3389/fpls.2017.01464
- NAID
  120007134052
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663
[Journal Article] eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice2017
- Author(s)
  1.Takeshi Kuroha, Keisuke Nagai, Yusuke Kurokawa, Yoshiaki Nagamura, Miyako Kusano, Hideshi Yasui, Motoyuki Ashikari, Atsushi Fukushima
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 8 Pages: 1753-1753
- DOI
  10.3389/fpls.2017.01753
- NAID
  120007134740
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K07663, KAKENHI-PROJECT-16K18565, KAKENHI-PLANNED-17H06473
[Journal Article] Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite Profiling2016
- Author(s)
  Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Mami Yamazaki, Eva Knoch, Tetsuya Mori, Naoyuki Umemoto, Masaki Morita, Go Hirai, Mikiko Sodeoka, and Kazuki Saito
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 7 Pages: 1883-1883
- DOI
  10.3389/fpls.2016.01883
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-16H01167, KAKENHI-PROJECT-26850024, KAKENHI-PROJECT-15K12760, KAKENHI-PROJECT-26350967
[Journal Article] 植物におけるオミックス統合ネットワークシステム生物学2016
- Author(s)
  福島　敦史
- Journal Title
  
  SAR News
  
  Volume: 31 Pages: 9-16
- Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] 植物科学におけるトランスクリプトーム解析の最前線2016
- Author(s)
  市橋泰範、福島敦史
- Journal Title
  
  植物科学の最前線（BSJ-Review）
  
  Volume: -
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding2015
- Author(s)
  Miyako Kusano, Ivan Baxter, Atsushi Fukushima, Akira Oikawa, Yozo Okazaki, Ryo Nakabayashi, Denise J. Bouvrette, Frederic Achard, Andrew R. Jakubowski, Joan M. Ballam, Jonathan R. Phillips, Angela H. Culler, Kazuki Saito, George G. Harrigan
- Journal Title
  
  Metabolomics
  
  Volume: 11 Issue: 2 Pages: 261-270
- DOI
  10.1007/s11306-014-0702-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds caused severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings2015
- Author(s)
  Ohashi, M., Ishiyama, K., Kusano, M., Fukushima, A., Kojima, S., Hanada, A., Kanno, K., Hayakawa, T., Seto, Y., Kyozuka, J., Yamaguchi, S., Yamaya, T.
- Journal Title
  
  Plant J.
  
  Volume: 81 Issue: 2 Pages: 347-356
- DOI
  10.1111/tpj.12731
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-ORGANIZER-22119001, KAKENHI-PLANNED-22119003, KAKENHI-PLANNED-22119008, KAKENHI-PROJECT-24580090, KAKENHI-PROJECT-26450073, KAKENHI-PROJECT-26850024
[Journal Article] Using metabolomic approaches to explore chemical diversity in rice2015
- Author(s)
  Miyako Kusano, Zhigang Yang, Yozo Okazaki, Ryo Nakabayashi, Atsushi Fukushima, Kazuki Saito
- Journal Title
  
  Molecular Plant
  
  Volume: 8 Issue: 1 Pages: 58-67
- DOI
  10.1016/j.molp.2014.11.010
- NAID
  120007130222
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] Integrated analysis of transcriptome and metabolome of Arabidopsis albino or pale green mutants with disrupted nuclear-encoded chloroplast proteins.2014
- Author(s)
  M. Satou, H. Enoki, A. Oikawa, D. Ohta, K. Saito, T. Hachiya, H. Sakakibara, M. Kusano, A. Fukushima, K. Saito, M. Kobayashi, N. Nagata, F. Myouga, K. Shinozaki, R. Motohashi
- Journal Title
  
  Plant Molecular Biology
  
  Volume: 85 Issue: 4-5 Pages: 411-428
- DOI
  10.1007/s11103-014-0194-9
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-25120727, KAKENHI-PROJECT-26440170, KAKENHI-PROJECT-26850024, KAKENHI-PLANNED-25113010
[Journal Article] Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis2014
- Author(s)
  Atsushi Fukushima, Miyako Kusano, Ramon Francisco Mejia, Mami Iwasa, Makoto Kobayashi, Naomi Hayashi, Akiko Watanabe-Takahashi, Tomoko Narisawa, Takayuki Tohge, Manhoi Hur, Eve Syrkin Wurtele, Basil J. Nikolau, Kazuki Saito
- Journal Title
  
  Plant Physiology
  
  Volume: 165 Issue: 3 Pages: 948-961
- DOI
  10.1104/pp.114.240986
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] Integrated network analysis and effective tools in plant systems biology2014
- Author(s)
  Atsushi Fukushima, Shigehiko Kanaya, Kozo Nishida
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 5 Pages: 598-598
- DOI
  10.3389/fpls.2014.00598
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] A network perspective on nitrogen metabolism from model to crop plants using integrated “omics” approaches2014
- Author(s)
  Atsushi Fukushima, Miyako Kusano
- Journal Title
  
  Journal of Experimental Botany
  
  Volume: 65 Issue: 19 Pages: 5619-5630
- DOI
  10.1093/jxb/eru322
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26850024
[Journal Article] DiffCorr: an R package to analyze and visualize differential correlations in biological networks2013
- Author(s)
  Atsushi Fukushima
- Journal Title
  
  Gene
  
  Volume: 518 Pages: 209-214
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Recent progress in the development of metabolome databases for plant systems biology2013
- Author(s)
  Atsushi Fukushima
- Journal Title
  
  Front. Plant Sci.
  
  Volume: 4 Pages: 73-73
- DOI
  10.3389/fpls.2013.00073
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones2013
- Author(s)
  Mami Yamazaki, Keiichi Mochida, Takashi Asano, Ryo Nakabayashi, Motoaki Chiba, Udomson Nirin, Yasuyo Yamazaki, Dayan B. Goodenowe, Ushio Sankawa, Takuhiro Yoshida, Atsushi Toyoda, Yasushi Totoki, Yoshiyuki Sakaki, Elsa Góngora-Castill, C. Robin Buell, Tetsuya Sakurai and Kazuki Saito
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: 54 Issue: 5 Pages: 686-696
- DOI
  10.1093/pcp/pct040
- NAID
  10031177048
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008, KAKENHI-PROJECT-24570041
[Journal Article] Transcriptome data modeling : an approach toward target identification for plant metabolic engineering2013
- Author(s)
  Keiko Yonekura-Sakakibara, Atsushi Fukushima, Kazuki Saito
- Journal Title
  
  Curr. Opin. Biotechnol
  
  Volume: 24 Pages: 285-290
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Recent progress in the development of metabolome databases for plant systems biology2013
- Author(s)
  Atsushi Fukushima, Miyako Kusano
- Journal Title
  
  Front. Plant Sci
  
  Volume: 4 Pages: 73-73
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana2012
- Author(s)
  Keiko Yonekura-Sakakibara, Atsushi Fukushima, Ryo Nakabayashi, Kousuke Hanada, Fumio Matsuda, Satoko Sugawara, Eri Inoue, Takashi Kuromori, Takuya Ito, Kazuo Shinozaki, Bunyapa Wangwattana, Mami Yamazaki, Kazuki Saito.
- Journal Title
  
  Plant J.
  
  Volume: 69 Pages: 154-167
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22108008
[Journal Article] Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches2012
- Author(s)
  Atsushi Fukushima, Tomoko Nishizawa, Mariko Hayakumo, Shoko Hikosaka, Kazuki Saito, Eiji Goto, Miyako Kusano
- Journal Title
  
  Plant Physiol
  
  Volume: 158 Pages: 1487-1502
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Deciphering starch quality of rice kernels using metabolite profiling and pedigree network analysis2012
- Author(s)
  Miyako Kusano, Atsushi Fukushima, Naoko Fujita, Yozo Okazaki, Makoto Kobayashi, Naoko Fujita Oitome, Kaworu Ebana, Kazuki Saito
- Journal Title
  
  Mol. Plant
  
  Volume: 5 Pages: 442-451
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches2012
- Author(s)
  Atsushi Fukushima
- Journal Title
  
  Plant Physiol.
  
  Volume: 158 Issue: 4 Pages: 1487-1502
- DOI
  10.1104/pp.111.188367
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Transcriptional and metabolic programs following exposure of plants to UV-B irradiation2011
- Author(s)
  Takayuki Tohge, Miyako Kusano, Atsushi Fukushima, Kazuki Saito, Alisdair R. Fernie
- Journal Title
  
  Plant Signal. Behav
  
  Volume: 6 Pages: 1987-1992
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to ultraviolet-B light2011
- Author(s)
  Miyako Kusano, Takayuki Tohge, Atsushi Fukushima, Makoto Kobayashi, Naomi Hayashi, Hitomi Otsuki, Youichi Kondou, Hiroto Goto, Mika Kawashima, Fumio Matsuda, Rie Niida, Minami Matsui, Kazuki Saito, Alisdair R. Fernie
- Journal Title
  
  Plant J
  
  Volume: 67 Pages: 354-369
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Journal Article] Current challenges and future potential of tomato breeding using omics approaches
- Author(s)
  Miyako Kusano, Atsushi Fukushima
- Journal Title
  
  Breed. Sci
  
  Volume: (in press)
- NAID
  10031151522
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] 生育環境の違いによる'染井吉野'の全ゲノムメチル化比較2023
- Author(s)
  松本麻子・川口晃平・福島敦史・加藤珠理・草野都・小林誠
- Organizer
  第135回日本森林学会大会
- Data Source
  KAKENHI-PROJECT-20K21344
[Presentation] 質量分析による植物メタボロミクスデータの情報解析と共有2023
- Author(s)
  福島敦史
- Organizer
  2023年度日本計量生物学会年会
- Data Source
  KAKENHI-PROJECT-20K06043
[Presentation] RIKEN Plant Metabolome MetaDatabaseの開発2022
- Author(s)
  福島敦史、高橋みき子、長崎英樹、青野佑亮、小林誠、草野都、斉藤和季、小林紀郎、有田正規
- Organizer
  日本質量分析学会第70回質量分析総合討論会
- Data Source
  KAKENHI-PROJECT-20K06043
[Presentation] 植物メタボロームデータの標準化と共有に向けた統合メタデータベースの開発2022
- Author(s)
  福島敦史, 高橋みき子, 長崎英樹, 小林誠, 草野都, 斉藤和季, 小林紀郎, 有田正規
- Organizer
  第63回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-20K06043
[Presentation] メタボロームデータの標準化と共有のための統合メタデータベース開発2021
- Author(s)
  福島敦史
- Organizer
  第15回メタボロームシンポジウムプログラム
- Invited
- Data Source
  KAKENHI-PROJECT-20K06043
[Presentation] 植物メタボロームデータの標準化と共有に向けた統合メタデータベースの開発2021
- Author(s)
  福島敦史, 高橋みき子, 長崎英樹, 小林誠, 草野都, 斉藤和季, 小林紀郎, 有田正規
- Organizer
  第38回日本植物バイオテクノロジー学会
- Data Source
  KAKENHI-PROJECT-20K06043
[Presentation] Secretory leukocyte protease inhibitor による細胞移動能の制御機構に関する研究2020
- Author(s)
  三上剛和, 福島敦史, 水谷祐輔，早津学，小宮山一雄，牛木辰男
- Organizer
  第125回日本解剖学会総会・全国学術集会
- Data Source
  KAKENHI-PROJECT-18K07226
[Presentation] ディファレンシャルネットワークに基づく遺伝子機能予測2019
- Author(s)
  福島敦史
- Organizer
  第37回日本植物細胞分子生物学会（京都）大会
- Data Source
  KAKENHI-PROJECT-17K07663
[Presentation] 植物が生産するUV-B防御物質に対する光吸収スペクトルの理論計算2019
- Author(s)
  桑畑和明, 福島敦史, 長嶋雲兵, 草野都, 立川仁典
- Organizer
  第13回メタボロ―ムシンポジウム
- Data Source
  KAKENHI-PROJECT-19K05711
[Presentation] RIKEN Plant Metabolome MetaDatabase: An integrated plant metabolome data repository based on the semantic web2018
- Author(s)
  Atsushi Fukushima, Mikiko Takahashi, Nozomu Sakurai, Toshiaki Tokimatsu, Hideki Nagasaki, Hideki Hirakawa, Takeshi Ara, Masanori Arita, Norio Kobayashi
- Organizer
  SWAT4HCLS 2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07663
[Presentation] 植物メタボロームデータの再解析・アノテーション高度化に向けた情報基盤整備2018
- Author(s)
  福島敦史, 津川裕司, 高橋みき子, 小林紀郎
- Organizer
  第12回メタボロームシンポジウム
- Data Source
  KAKENHI-PROJECT-17K07663
[Presentation] MSEAp: Development of a metabolite set enrichment analysis toolkit for plant metabolomics community2018
- Author(s)
  Atsushi Fukushima and Kozo Nishida
- Organizer
  第36回日本植物細胞分子生物学会（金沢）大会
- Data Source
  KAKENHI-PROJECT-17K07663
[Presentation] Let's Use R/Bioconductor and Log Your Analysis2014
- Author(s)
  Atsushi Fukushima
- Organizer
  the 10th International conference of the Metabolomics Society (Metabolomics 2014)
- Place of Presentation
  Marica/Washington Hotel (山形県鶴岡市)
- Year and Date
  2014-06-23
- Invited
- Data Source
  KAKENHI-PROJECT-26850024
[Presentation] 独立成分分析によるアントシアニン修飾関連配糖化酵素遺伝子の機能同定2012
- Author(s)
  榊原圭子, 福島敦史, 中林亮, 花田耕介, 松田史生, 菅原聡子, 井上恵理, 黒森崇, 伊藤卓也, 篠崎一雄, Wangwattana Bunyapa, 山崎真巳, 斉藤和季
- Organizer
  第53回日本植物生理学会年会
- Place of Presentation
  京都, 日本
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Transcriptome Independent Component Analysis Lead to the Identification of Two Glycosyltransferases Involved in Anthocyanin Modification in Arabidopsis thaliana2012
- Author(s)
  Keiko Sakakibara, Atsushi Fukushima, Ryo Nakabayashi, Kousuke Hanada, Fumio Matsuda, Satoko Sugawara, Eri Inoue, Takashi Kuromori, Takuya Ito, Kazuo Shinozaki, Bunyapa Wangwattana, Mami Yamazaki, Kazuki Saito
- Organizer
  26th International Conference on Polyphenols (ICP2012)
- Place of Presentation
  Florence, Italy
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] DiffCorr: an R package to analyze and visualize differential correlations in biological networks2012
- Author(s)
  Atsushi Fukushima
- Organizer
  PRIB 2012
- Place of Presentation
  Tokyo Japan
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] DiffCorr: an R package to analyze and visualize differential correlations in biological networks2012
- Author(s)
  福島敦史
- Organizer
  生命医薬情報学連合大会(2012年日本バイオインフォマティクス学会年会情報計算化学生物学会（CBI学会）年次大会オミックス医療研究会年会)
- Place of Presentation
  東京, 日本
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] DiffCorr: an R package to analyze and visualize differential correlations in biological networks2012
- Author(s)
  福島敦史
- Organizer
  生命医薬情報学連合大会(2012 年日本バイオインフォマティクス学会年会情報計算化学生物学会(CBI 学会)年次大会オミックス医療研究会年会)
- Place of Presentation
  東京, 日本
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] DiffCorr: an R package to analyze and visualize differential correlations in biological networks2012
- Author(s)
  Atsushi Fukushima
- Organizer
  PRIB 2012
- Place of Presentation
  Tokyo, Japan
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Characterizing coexpression modules using graph clustering and differential coexpression approaches in Solanum lycopersicum2012
- Author(s)
  福島敦史, 西澤具子, 早雲まり子, 彦坂晶子, 斉藤和季, 後藤英司, 草野都
- Organizer
  第53回日本植物生理学会年会
- Place of Presentation
  京都, 日本
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Two Glycosyltransferases Involved in Anthocyanin Modification Delimited by Transcriptome Independent Component Analysis in Arabidopsis thaliana2011
- Author(s)
  Keiko Sakakibara, Atsushi Fukushima, Ryo Nakabayashi, Kousuke Hanada, Fumio Matsuda, Satoko Sugawara, Eri Inoue, Takashi Kuromori, Takuya Ito, Kazuo Shinozaki, Bunyapa Wangwattana, Mami Yamazaki, Kazuki Saito
- Organizer
  Gordon Research Conference on Plant Metabolic Engineering, Waterville
- Place of Presentation
  Valley, USA
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Exploring tomato gene functions based on coexpression modules using graph clustering approaches2011
- Author(s)
  Atsushi Fukushima, Tomoko Nishizawa, Mariko Hayakumo, Shoko Hikosaka, Kazuki Saito, Eiji Goto, Miyako Kusano
- Organizer
  The 2011 Annual Conference of the Japanese Society for Bioinformatic
- Place of Presentation
  Kobe, Japan
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Exploring tomato gene functions based on coexpression modules using graph clustering approaches2011
- Author(s)
  Atsushi Fukushima, Tomoko Nishizawa, Mariko Hayakumo, Shoko Hikosaka, Kazuki Saito, Eiji Goto, Miyako Kusano
- Organizer
  The 2011 Annual Conference of the Japanese Society for Bioinformatics
- Place of Presentation
  神戸国際会議場 (兵庫県)
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Characterizing coexpression modules using graph clustering and differential correlation approaches in Solanum lycopersicum2011
- Author(s)
  Atsushi Fukushima, Tomoko Nishizawa, Mariko Hayakumo, Shoko Hikosaka, Kazuki Saito, Eiji Goto, Miyako Kusano
- Organizer
  8th Solanaceare and 2nd Cucurbitaceae Joint Conference
- Place of Presentation
  神戸国際会議場 (兵庫県)
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] Characterizing coexpression modules using graph clustering and differential coexpression approaches in Solanum lycopersicum2011
- Author(s)
  Atsushi Fukushima, Tomoko Nishizawa, Mariko Hayakumo, Shoko Hikosaka, Kazuki Saito, Eiji Goto, Miyako Kusano
- Organizer
  8th Solanaceae and 2nd Cucurbitaceae Genome Joint Conference (SOL&ICuGI2011)
- Place of Presentation
  Kobe, Japan
- Data Source
  KAKENHI-PROJECT-23700355
[Presentation] トマト果実肥大に及ぼす代謝変動解明のためのシステム生物学的アプローチ
- Author(s)
  福島敦史,　西澤具子, 小林誠, 彦坂晶子, 後藤英司, 斉藤　和季, 草野　都
- Organizer
  第32回日本植物細胞分子生物学会大会
- Place of Presentation
  アイーナ (いわて県民情報交流センター) (岩手県盛岡市)
- Year and Date
  2014-08-21 – 2014-08-22
- Data Source
  KAKENHI-PROJECT-26850024

1. KUSANO Miyako (60415148)

# of Collaborated Projects: 5 results

# of Collaborated Products: 2 results
2. SAITO Kazuki (00146705)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
3. YAMAZAKI Mami (70222370)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
4. YOSHIMOTO Naoko (10415333)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
5. SAKAKIBARA Keiko (20360555)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
6. NAKABAYASHI Ryo (30586160)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
7. Mikami Yoshikazu (80434075)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
8. Matsumoto Asako (90353862)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
9. 上原範久 (30368211)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 早津学 (40468898)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
11. 水谷祐輔 (40646238)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
12. 津田啓方 (60325470)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 立川仁典 (00267410)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
14. 青木裕一 (40747599)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 加藤珠理 (90467217)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
16. 圓山恭之進 (10425530)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 永田典子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
18. 平井剛

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
19. 黒羽剛

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
20. 斉藤和季

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
21. 豊岡公徳

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
22. 経塚淳子

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
23. 山谷知行

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
24. 馬建鋒

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

FUKUSHIMA Atsushi 福島 敦史

HUKUSHIMA Atsushi 福島 敦史

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数理情報科学とメタボローム解析による作物―環境間相互作用シグナル因子の同定Principal Investigator

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microRNA nexus contributing rice shoot growth during seedling stages

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Development and application of integrative learning algorithms for gene function prediction in plantsPrincipal Investigator

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Tree age estimation by metabolic epigenomics in clonal cultiver Cerasus as a model

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Digital chemical mapping by treatment of narrow-band LED light in the plant metabolome

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Study of the mechanism underlying secretory leukocyte protease inhibitor (SLPI)-induced malignancy of cancer

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Development of gene-function prediction models with highly predictive and sustainable construction by integrated network analysisPrincipal Investigator

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in silico prediction of gene function associated with agronomically useful traits in crops using differential network analysisPrincipal Investigator

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Development of a novel integrated data mining that facilitates functional analysis in the post-genomic era -- Exploring novel gene coexpression --Principal Investigator

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Metabolomics-assisted genome mining for biosynthesis of plant metabolites

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[Book] Chapter "Plant Metabolomics: The Great Potential of Plant Metabolomics in Big Data Biology" in Plant Omics Advances in Big Data Biology (Edited by (Hajime Ohyanagi, Kentaro Yano, Eiji Yamamoto, Ai Kitazumi)2022

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[Book] Chapter 1 "Using the DiffCorr Package to Analyze and Visualize Differential Correlations in Biological Networks" In: Dehmer, Shi, Emmert-Streib, editors. Computational Network Analysis with R - Applications in Biology, Medicine and Chemistry2016

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[Journal Article] Transcriptomic, Hormonomic and Metabolomic Analyses Highlighted the Common Modules Related to Photosynthesis, Sugar Metabolism and Cell Division in Parthenocarpic Tomato Fruits during Early Fruit Set2022

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FUKUSHIMA Atsushi 福島敦史

HUKUSHIMA Atsushi 福島敦史