UCHIYAMA Ikuo 内山郁夫

Researcher Number	90243089
Other IDs
Affiliation (Current)	2021: 基礎生物学研究所, ゲノム情報研究室, 准教授
Affiliation (based on the past Project Information) *help	2016 – 2020: 基礎生物学研究所, ゲノム情報研究室, 助教 2014: 基礎生物学研究所, 理論生物学領域, 助教 2008 – 2011: National Institute for Basic Biology, ゲノム情報研究室, 助教 2009: 大学共同利用機関法人自然科学研究機構, 助教 2007: 自然科学研究機構岡崎共通研究施設, 計算科学研究センター, 助教 … More
Review Section/Research Field	Principal Investigator Biological Sciences / ゲノム情報科学 / Genome biology Except Principal Investigator Biological Sciences / Genetics/Genome dynamics / Pathological medical chemistry / Genome biology / Basic Section 40030:Aquatic bioproduction science-related / Basic Section 41050:Environmental agriculture-related
Keywords	Principal Investigator 微生物ゲノム / ゲノム進化 / ゲノムデータベース / 比較ゲノム解析 / オーソログ分類 / クラスタリング / ホモロジー / 水平遺伝子移動 / 水平遺伝子異動 / ゲノム … More Except Principal Investigator ゲノム進化 / 細菌ゲノム / 制限酵素 / ゲノム / 病原菌 / ヒメツリガネゴケ / EST / ゲノム比較 / バイオテクノロジー / 不等分裂 / 細胞極性 / プロトプラスト / 完全長cDNA / 過剰発現 / ゲノム再編 / トランスクリプトーム / ゲノム微生物学 / 古細菌 / ゲノム・メチル化 / エピジェネティクス / 全長cDNA / オーキシン / サイトカイニン / 発生 / 植物ホルモン / ゲノム構造 / 細胞死 / 遺伝子増幅 / 再生 / RNA干渉 / GFP / 胞子体 / モデル化 / 遺伝子 / 進化 / 発現解析 / 発現制御 / ゲノム構築 / ゲノム維持 / 比較ゲノム / バイオインフォマティクス / 遺伝子発現制御 / シス因子 / 遺伝子発現解析 / パスウェイ解析 / 発現制御ネットワーク / 転写調節 / エピゲノム / 次世代シークエンサー / 病原細菌 / ゲノム多型 / ゲノム不安定性 / 病原性 / 毒素 / ゲノム生物学 / ゲノム内コンフリクト / システム・バイオロジー / ピロリ菌 / 極限環境微生物 / バイオインフォーマティクス / pathogenic bacteria / bacterial genomes / genome polymorphism / genome instability / genome evolution / genome comparison / pathogenicity / toxin / 微生物 / 細菌 / 赤潮 / ヘテロカプサ / 溶血活性 / 二枚貝へい死 / シオミズツボワムシ / 実用珪藻 / 光環境応答・適応 / 光合成 / ゲノム編集 / 集光タンパク質 Less

実用モデル珪藻の光環境応答・適応機構の最適化Ongoing
- Principal Investigator
  
  伊福健太郎
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 41050:Environmental agriculture-related
- Research Institution
  Kyoto University
ヘテロカプサ赤潮はなぜ貝類のみをへい死させるか―不安定毒素の全容解明への挑戦－Ongoing
- Principal Investigator
  
  山崎康裕
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 40030:Aquatic bioproduction science-related
- Research Institution
  Fisheries Research and Education Agency
Comprehensive analysis of the role of horizontal gene transfer in prokaryotic genome evolution based on comparative genome analysisPrincipal Investigator
- Principal Investigator
  
  Uchiyama Ikuo
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genome biology
- Research Institution
  National Institute for Basic Biology
Exploring the rules of reductive genome evolution in free-living bacteria
- Principal Investigator
  
  Nakai Ryosuke
- Project Period (FY)
  2015 – 2016
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Genome biology
- Research Institution
  National Institute of Genetics
Studies on molecular mechanisms of sexual differenciation based on genome informatics approach
- Principal Investigator
  
  SUYAMA Mikita
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
  Kyoto University
Selfish DNases at a diverging point to survival, death and evolution
- Principal Investigator
  
  KOBAYASHI Ichizo
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genetics/Genome dynamics
- Research Institution
  The University of Tokyo
Development of a method for core genome identification as a basis for microbial comparative genomicsPrincipal Investigator
- Principal Investigator
  
  UCHIYAMA Ikuo
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  ゲノム情報科学
- Research Institution
  National Institute for Basic Biology
Computational Biology for complicated genome system
- Principal Investigator
  
  KUHARA Satoru
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
多細胞生物進化解明の基盤としての植物不等分裂に関わる遺伝子ネットワークの解明
- Principal Investigator
  
  藤田知道
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute for Basic Biology
多細胞生物進化解明の基盤としての植物不等分裂に関わる遺伝子ネットワークの解明
- Principal Investigator
  
  藤田知道
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Okazaki National Research Institutes
ゲノム比較解析システムの構築Principal Investigator
- Principal Investigator
  
  内山郁夫
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Okazaki National Research Institutes
ヒメツリガネゴケで植物ホルモンオーキシン、サイトカイニン機能解明への網羅的研究
- Principal Investigator
  
  長谷部光泰
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Okazaki National Research Institutes
制限酵素修飾酵素遺伝子によるゲノムの存続と進化に関する実験的情報学的研究
- Principal Investigator
  
  小林一三
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
ゲノム比較解析システムの構築Principal Investigator
- Principal Investigator
  
  内山郁夫
- Project Period (FY)
  2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Okazaki National Research Institutes
制限酵素修飾酵素遺伝子によるゲノムの存続と進化に関する実験的情報学的研究
- Principal Investigator
  
  KOBAYASHI Ichizo
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
ゲノム比較解析システムの構築Principal Investigator
- Principal Investigator
  
  内山郁夫
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Okazaki National Research Institutes
Roles of restriction-modification gene complexes in generation of genome diversity in bacteria
- Principal Investigator
  
  KOBAYASHI Ichizo
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Pathological medical chemistry
- Research Institution
  The University of Tokyo

All 2020 2019 2018 2017 2016 2012 2011 2010 2009 2008 2007 2006 Other

All Journal Article Presentation Book

[Book] メタゲノム解析技術の最前線(服部正平監修)(比較ゲノムにおけるバイオインフォマティクス基盤)2011
- Author(s)
  内山郁夫
- Publisher
  CMC出版
- Data Source
  KAKENHI-PROJECT-20310125
[Book] Omics Approaches to Protein Function Prediction2011
- Author(s)
  Ikuo Uchiyama
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-20310125
[Book] Omics approaches to protein function prediction(Daisuke Kihara ed.)(Functional inference in microbial genomics based on large-sccale comparative analysis)2011
- Author(s)
  内山郁夫
- Publisher
  Springer
- Data Source
  KAKENHI-PROJECT-20310125
[Book] 比較ゲノムにおけるバイオインフォマティクス基盤2010
- Author(s)
  内山郁夫
- Publisher
  CMC出版
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons2018
- Author(s)
  Uchiyama Ikuo、Mihara Motohiro、Nishide Hiroyo、Chiba Hirokazu、Kato Masaki
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 47
- DOI
  10.1093/nar/gky1054
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H03610, KAKENHI-PROJECT-17H04666
[Journal Article] Complete genome sequence of Aurantimicrobium minutum type strain KNCT, a planktonic ultramicrobacterium isolated from river water2016
- Author(s)
  Nakai R, Fujisawa T, Nakamura Y, Nishide H, Uchiyama I, Baba T, Toyoda A, Fujiyama A, Naganuma T, Niki H
- Journal Title
  
  Genome Announcements
  
  Volume: 4
- DOI
  10.1128/genomea.00616-16
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K14424
[Journal Article] Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species.2012
- Author(s)
  K Yahara, et al., I Kobayashi
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 4(5) Pages: 628-640
- DOI
  10.1093/gbe/evs043
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21370001, KAKENHI-PROJECT-22406026, KAKENHI-PUBLICLY-24113506, KAKENHI-PROJECT-24790412, KAKENHI-PLANNED-22114006
[Journal Article] ピロリ菌エピジェネティツクス遺伝子の東西比較から発見された「遺伝子内ドメイン移動によるタンパク多様化」2012
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Journal Title
  
  日本ヘリコバクター学会誌
  
  Volume: Vol. 13, No. 2 Pages: 36-39
- Data Source
  KAKENHI-PROJECT-21370001
[Journal Article] Domain movement within a gene: a novel evolutionary mechanism for protein diversification2011
- Author(s)
  Y Furuta, M Kawai, I Uchiyama, I Kobayashi
- Journal Title
  
  PLoS ONE
  
  Volume: 6(4)
- DOI
  10.1371/journal.pone.0018819
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21370001
[Journal Article] BMC Microbiology2011
- Author(s)
  Kawai M., Furuta Y., Yahara K., Tsuru T., Oshima K., Handa N., Takahashi N., Yoshida M., Azuma T., Hattori M., Uchiyama I., Kobayashi I.
- Journal Title
  
  11 104
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Evolution in an oncogenic bacterial species with extreme genome plasticity : Helicobacter pylori East Asian genomes2011
- Author(s)
  Mikihiko Kawai, Yoshikazu Furuta, Koji Yahara, Takeshi Tsuru, Kenshiro Oshima, Naofumi Handa, Noriko Takahashi, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, Ichizo Kobayashi
- Journal Title
  
  BMC Microbiology
  
  Volume: 11
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Birth and death of genes linked to chromosomal inversion2011
- Author(s)
  Furuta, Y., Kawai, M., Yahara, K., Takahashi, N., Handa, N., Tsuru, T., Oshima, K., Yoshida, M., Azuma, T., Hattori, M., Uchiyama, I., Kobayashi, I.
- Journal Title
  
  Proc.Natl.Acad.Sci.USA
  
  Volume: 108 Pages: 1501-1506
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Birth and death of genes linked to chromosomal inversion, Proc.2011
- Author(s)
  Furuta Y., Kawai M., Yahara K., Takahashi N., Handa N., Tsuru T., Oshima K., Yoshida M., Azuma T., Hattori M., Uchiyama I., Kobayashi I.
- Journal Title
  
  Natl.Acad.Sci.USA 108
  
  Pages: 1501-1506
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] MBGD update 2010 : toward a comprehensive resource for exploring microbial genome diversity2010
- Author(s)
  Uchiyama I., Higuchi T., Kawai M.
- Journal Title
  
  Nucleic Acids, Res. 38
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] MBGD update 2010 : toward a comprehensive resource for exploring microbial genome diversity2010
- Author(s)
  Uchiyama, I., Higuchi, T., Kawai, M
- Journal Title
  
  Nucleic Acids Res. 38
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity2010
- Author(s)
  Uchiyama, I., Higuchi, T., and Kawai, M.
- Journal Title
  
  Nucleic Acids Res
  
  Volume: 38
- DOI
  10.1093/nar/gkp948
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21370001
[Journal Article] MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity2010
- Author(s)
  Uchiyama, I., Higuchi, T., Kawai, M.
- Journal Title
  
  Nucleic Acids Res (in press)
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] Complete Genome Sequence of Macrococcus caseolyticus Strain JSCS5402 Reflecting the Ancestral Genome of the Human-Pathogenic Staphylococci2009
- Author(s)
  Baba T., Kuwahara-Arai K., Uchiyama I., Takeuchi F., Ito T., Hiramatsu K.
- Journal Title
  
  J.Bacteriol. 191
  
  Pages: 1180-1190
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Multiple genome alignment for identifying the core structure among moderately related microbial genomes2008
- Author(s)
  Uchiyama, I.
- Journal Title
  
  BMC Genomics 9
  
  Pages: 515-515
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Multiple genome alignment for identifying the core structure among moderately related microbial genomes2008
- Author(s)
  内山郁夫
- Journal Title
  
  BMC Genomics 9
  
  Pages: 515-515
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310125
[Journal Article] Multiple genome alignment for identifying the core structure among moderately related microbial genomes2008
- Author(s)
  Uchiyama, I.
- Journal Title
  
  BMC Genomics 9
  
  Pages: 515-515
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups2007
- Author(s)
  Uchiyama, I.
- Journal Title
  
  Nucleic Acids Res. 35
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] MBGD : a platform for microbial comparative genomics based on the automated construction of orthologous groups.2007
- Author(s)
  Uchiyama, I
- Journal Title
  
  Nucleic Acids Res. 35
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes2006
- Author(s)
  Uchiyama, I., Higuchi, T., Kobayashi, I.
- Journal Title
  
  BMC Bioinformatics 7
  
  Pages: 472-472
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes.2006
- Author(s)
  Uchiyama, I.
- Journal Title
  
  Nucleic Acids Res. 34
  
  Pages: 647-658
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes2006
- Author(s)
  Uchiyama, I.
- Journal Title
  
  Nucleic Acids Res. 34
  
  Pages: 647-658
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] CGAT : a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.2006
- Author(s)
  Uchiyama, I., Higuchi, T., Kobayashi, I.
- Journal Title
  
  BMC Bioinformatics 7, 472
  
  Pages: 51-51
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] toward a comprehensive resource for exploring microbial genome diversity
- Author(s)
  Uchiyama, I., Higuchi, T., Kawai, M.
- Journal Title
  
  Nucleic Acids Res (In press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17018026
[Presentation] 微生物比較ゲノムデータベースMBGDに基づく水平移動遺伝子動態の網羅的解析2020
- Author(s)
  内山郁夫
- Organizer
  第14回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 非コア遺伝子の並び順の保存性に基づくゲノミックアイランドの抽出2019
- Author(s)
  内山郁夫
- Organizer
  第13回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 有害渦鞭毛藻 Heterocapsa circularisquama の株間における毒性と発現遺伝子の比較．2019
- Author(s)
  山﨑康裕，亀尾辰砂，紫加田知幸，中山奈津子，西出浩世，内山郁夫
- Organizer
  2019年度日本プランクトン学会・日本ベントス学会合同大会
- Data Source
  KAKENHI-PROJECT-18K05809
[Presentation] Orthology Relationships among Pan-Genomes: the Microbial Genome Database (MBGD) for Exploring Microbial Diversity2019
- Author(s)
  Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide
- Organizer
  The 67th NIBB Conference "Quest for Orthologs"
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 微生物比較ゲノムデータベースMBGDを用いた水平移動遺伝子動態の網羅的解析2019
- Author(s)
  内山郁夫
- Organizer
  第42回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 微生物比較ゲノムデータベースを用いた水平移動遺伝子動態の網羅的解析2019
- Author(s)
  内山郁夫
- Organizer
  遺伝研研究集会環境中のDNA循環
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 公開ゲノムの全遺伝子レパートリーをカバーする微生物オーソログテーブルの構築2018
- Author(s)
  内山郁夫、三原基広、西出浩世、千葉啓和
- Organizer
  第12回ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] オーソログを探求する：Quest for Orthologs会議について2018
- Author(s)
  内山郁夫
- Organizer
  日本進化学会第20回大会
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 非コア遺伝子に着目した水平移動遺伝子の検出2018
- Author(s)
  内山郁夫
- Organizer
  遺伝研研究集会「DNA水平伝搬」
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] A new protocol for constructing the ortholog table in Microbial Genome Database for Comparative Analysis2017
- Author(s)
  Ikuo Uchiyama
- Organizer
  NIG International Symposium 2017 "Life, environment, and evolution revealed by genomes"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] ゲノムコア構造から見た遺伝情報の水平移動2017
- Author(s)
  内山郁夫
- Organizer
  遺伝研研究集会「生物種間における遺伝情報の水平移動」
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] バクテリアのゲノムコア構造と遺伝子の水平伝搬2017
- Author(s)
  内山郁夫
- Organizer
  ConBio2017 フォーラム「遺伝子の水平伝搬とは何か」
- Data Source
  KAKENHI-PROJECT-17H03610
[Presentation] 超微小バクテリアの純粋培養とそのゲノム解析2016
- Author(s)
  中井亮佑、藤澤貴智、中村保一、西出浩世、内山郁夫、馬場知哉、豊田敦、藤山秋佐夫、長沼毅、仁木宏典
- Organizer
  第31回日本微生物生態学会大会
- Place of Presentation
  横須賀市文化会館、神奈川
- Year and Date
  2016-10-23
- Data Source
  KAKENHI-PROJECT-15K14424
[Presentation] Genome-wide survey of homologous recombination and diversifying selection in an extremely sexual bacterial species2012
- Author(s)
  K Yahara, M Kawai, Y Furuta, N Takahashi, N Handa. T Tsuru, K Oshima, M Yoshida. T Azuma, M Hattori. I Uchiyama, I Kobayashi
- Organizer
  Annual Meeting of the Society for Molecular Biology and Evolution 2012
- Place of Presentation
  Dublin, Ireland(Poster Presentation)
- Year and Date
  2012-06-23
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内でのドメイン配列移動(DoMo):タンパク質の構造機能変換の新しい機構2012
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本農芸化学会2012年度京都大会
- Place of Presentation
  京都女子大学、京都
- Year and Date
  2012-03-25
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 相同組換え率の分布と多様化選択:細菌でのゲノムワイド解析2012
- Author(s)
  矢原耕史、河合幹彦、古田芳一、高橋規子、半田直史、鶴剛史、大島健志朗、吉田優、東健、服部正平、D Matelska, S D-Horkawicz, J Bujnicki, 内山郁夫、小林一三
- Organizer
  日本遺伝学会第84回大会
- Place of Presentation
  九州大学、福岡
- Year and Date
  2012-09-24
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本進化学会第13回大会
- Place of Presentation
  京都大学、京都
- Year and Date
  2011-07-31
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本進化学会第13回大会、O-E19
- Place of Presentation
  京都市京都大学
- Year and Date
  2011-07-31
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ピロリ菌日本株ゲノム:超悪玉(?)発癌細菌の素顔2011
- Author(s)
  河合幹彦、古田芳一、矢原耕史、鶴剛史、大島健志朗、半田直史、高橋規子、吉田優、東健、服部正平、内山郁夫、小林一三
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜、横浜(ポスター発表)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ゲノムDNAの逆位に伴った遺伝子の重複と崩壊2011
- Author(s)
  古田芳一*, 河合幹彦*, 矢原耕史, 高橋規子, 半田直史, 鶴剛史, 大島健志朗, 吉田優, 東健, 服部正平, 内山郁夫, 小林一三(*:equalcontribution)
- Organizer
  ゲノム微生物学会ワークショップ-ゲノムで繋がる微生物研究の新展開-
- Place of Presentation
  仙台市東北大学(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ゲノムから見る東アジア型ピロリ菌の進化2011
- Author(s)
  内山郁夫、河合幹彦、古田芳一、矢原耕史、鶴剛史、大島健志朗．半田直史、高橋規子、吉田優、東健、服部正平、小林一三
- Organizer
  第17回日本ヘリコバクター学会学術集会
- Place of Presentation
  富山国際会議場、富山
- Year and Date
  2011-06-24
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] タンパク遺伝子内でのドメイン配列移動(Domo)2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  第84回日本生化学会大会
- Place of Presentation
  京都大学、京都
- Year and Date
  2011-09-23
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一, 河合幹彦, 内山郁夫, 小林一三
- Organizer
  ゲノム微生物学会ワークショップ-ゲノムで繋がる微生物研究の新展開-
- Place of Presentation
  仙台市東北大学(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 比較ゲノム解析ツールRECOGのメタゲノム解析への応用に向けた改良2011
- Author(s)
  内山郁夫
- Organizer
  ゲノム微生物学会
- Place of Presentation
  東北学院大学(宮城県)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] ゲノムDNAの逆位に伴った遺伝子の重複と崩壊2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本農芸化学会2011年度大会
- Place of Presentation
  京都市京都女子大学(口頭およびポスター発表)
- Year and Date
  2011-03-26
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] RECOG : a framework for systematic approaches to microbial genome comparison2011
- Author(s)
  内山郁夫
- Organizer
  International Symposium on Omics Approach to Microbes
- Place of Presentation
  NEERI, Nagpur, India
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本遺伝学会第83回大会、2B-06
- Place of Presentation
  京都市京都大学
- Year and Date
  2011-09-21
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] タンパク遺伝子内でのドメイン配列移動(Domo)2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  第84回日本生化学会大会、3P-0096
- Place of Presentation
  京都市国立京都国際会館
- Year and Date
  2011-09-22
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Novel genome rearrangement mechanisms detected by Helicobacter pylorigenome comparison2011
- Author(s)
  Yoshikazu Furuta, Mikihiko Kawai, Koji Yahara, Takeshi Tsuru, Noriko Takahashi, Naofumi Handa, Kenshiro Oshima, Masahira Hattori, Masaru Yoshida, Takeshi Azuma, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  International Union of Microbiological Societies 2011 Congress, BR30-3
- Place of Presentation
  Sapporo Convention Center, Sapporo
- Year and Date
  2011-09-09
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  日本遺伝学会第83回大会
- Place of Presentation
  京都大学、京都
- Year and Date
  2011-09-21
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動(DoMo) : エピジェネティックDNAメチル化遺伝子で発見されたタンパク質多様化の新しいしくみ2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜、横浜
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 遺伝子内ドメイン移動2011
- Author(s)
  古田芳一、河合幹彦、内山郁夫、小林一三
- Organizer
  第5回日本ゲノム微生物学会年会
- Place of Presentation
  仙台市東北学院大学(口頭およびポスター発表)
- Year and Date
  2011-03-16
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] DNA duplication associated with inversion (DDAI)and domain movement (DoMo) : two novel genome rearrangement mechanisms discovered through genome comparison2011
- Author(s)
  Yoshikazu Furuta, Mikihiko Kawai, Koji Yahara, Takeshi Tsuru, Noriko Takahashi, Naofumi Handa, Kenshiro Oshima, Masahira Hattori, Masaru Yoshida, Takeshi Azuma, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  Annual Meeting of the Society for Molecular Biology and Evolution 2011 (SMBE2011)
- Place of Presentation
  Kyoto Univ., Kyoto(poster presentation)
- Year and Date
  2011-07-28
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Novel genome rearrangement mechanisms detected by Helicobacter pylori genome comparison2011
- Author(s)
  Y Furuta, M Kawai, K Yahara, T Tsuru, N Takahashi, N Handa, K Oshiaa, M Hat tori, M Yoshida, T Azuma, I Uchiyama, I Kobayashi
- Organizer
  International Union of Microbiological Societies 2011 Congress (IUMS2011)
- Place of Presentation
  Sapporo Convention Center, Sapporo, Japan
- Year and Date
  2011-09-09
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ゲノムDNAの逆位に伴った遺伝子の重複と崩壊2011
- Author(s)
  古田芳一*、河合幹彦*、矢原耕史、高橋規子、半田直史、鶴剛史、大島健志朗、吉田優、東健、服部正平、内山郁夫、小林一三(*:equal contribution)
- Organizer
  第5回日本ゲノム微生物学会年会
- Place of Presentation
  仙台市東北学院大学(口頭およびポスター発表)
- Year and Date
  2011-03-16
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Genome rearrangements revealed through comparison of four complete genomes of Japanese Helicobacter pylori2010
- Author(s)
  Yoshikazu Furuta, Mikihiko Kawai, Koji Yahara, Takeshi Tsuru, Noriko Takahashi, Naofumi Handa, Kenshiro Oshima, Masahira Hattori, Masaru Yoshida, Takeshi Azuma, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  XXIIIrd International Workshop on Helicobacter and related bacteria in chronic digestive inflammation and gastric cancer, W7.2
- Place of Presentation
  Rotterdam, The Netherlands
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 大規模なゲノム比較のための統合解析環境RECOG2010
- Author(s)
  内山郁夫、北橋竜雄、樋口俊夫、河合幹彦
- Organizer
  第4回日本ゲノム微生物学会年会
- Place of Presentation
  九州大学(福岡県)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] ゲノムDNAの逆位に伴った遺伝子の重複と崩壊2010
- Author(s)
  小林一三、古田芳一、河合幹彦、矢原耕史、高橋規子、半田直史、鶴剛史、大島健志朗、吉田優、東健、服部正平、内山郁夫
- Organizer
  日本遺伝学会第82回大会、1A-02
- Place of Presentation
  札幌
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Complete genome sequences of multiple East Asian Helicobacter pylori strains reveals their co-evolution with human populations.2010
- Author(s)
  Ichizo Kobayashi, Mikihiko Kawai, Koji Yahara, Yoshikazu Furuta, Takeshi Tsuru, Naofumi Handa, Noriko Takahashi, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama.
- Organizer
  The 10th Japan-Korea International Symposium on Microbiology
- Place of Presentation
  Yokohama, JAPAN(ポスター発表)
- Year and Date
  2010-03-26
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] RECOG : Research Environment for Comparative Genomics2010
- Author(s)
  Ikuo Uchiyama, Mikihiko Kawai
- Organizer
  International Symposium on Biodiversity Sciences
- Place of Presentation
  ホテルルブラ王山(愛知県)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] Comparison of four complete genomes of Japanese Helicobacter pylori : Genome rearrangements and genomic islands2010
- Author(s)
  Yoshikazu Furuta, Mikihiko Kawai, Koji Yahara, Takeshi Tsuru, Noriko Takahashi, Naofumi Handa, Kenshiro Oshima, Masahira Hattori, Masaru Yoshida, Takeshi Azuma, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  Infectious Disease Genomics & Global Health 2010, 32
- Place of Presentation
  Hinxton, UK(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 多数株の種内比較によるゲノム進化ダイナミクス解析2010
- Author(s)
  河合幹彦、矢原耕史、古田芳一、鶴剛史、半田直史、高橋規子、大島健志朗、服部正平、吉田優、東健、内山郁夫、小林一三
- Organizer
  第4回日本ゲノム微生物学会年会
- Place of Presentation
  九州大学、福岡(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] H.pylori evolution : clues from Japanese isolates' genomesSelfish restriction systems switching on bacterial death program2010
- Author(s)
  Mikihiko Kawai, Koji Yahara, Yoshikazu Furuta, Takeshi Tsuru, Naofumi Handa, Noriko Takahashi, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  Hannover Medical School
- Place of Presentation
  Hannover, Germany
- Year and Date
  2010-08-06
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ピロリ菌10株のゲノム比較によるゲノム再編の検出2010
- Author(s)
  河合幹彦、矢原耕史、古田芳一、鶴剛史、半田直史、高橋規子、大島健志朗、服部正平、吉田優、東健、内山郁夫、小林一三
- Organizer
  第4回日本ゲノム微生物学会年会
- Place of Presentation
  九州大学、福岡(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ピロリ菌10株のゲノム比較によるゲノム再編の検出2010
- Author(s)
  河合幹彦、古田芳一、矢原耕史、鶴剛史、高橋規子、半田直史、大島健志朗、服部正平、吉田優、東健、内山郁夫、小林一三
- Organizer
  第12回日本進化学会大会、OP4-8
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ゲノムDNAの逆位に伴った遺伝子の重複と崩壊2010
- Author(s)
  小林一三、古田芳一、河合幹彦、矢原耕史、高橋規子、半田直史、鶴剛史、大島健志朗、吉田優、東健、服部正平、内山郁夫
- Organizer
  第33回日本分子生物学会年会・第83回日本生化学会大会合同大会(BMB2010)
- Place of Presentation
  神戸市神戸国際会議場(口頭およびポスター発表)
- Year and Date
  2010-12-07
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] integrated platform for comparative genomics based on large-scale ortholog grouping2009
- Author(s)
  Ikuo Uchiyama, MBGD, RECOG
- Organizer
  Quest for Orthologs"Wellcome Trust Conference Centre
- Place of Presentation
  Cambridge
- Data Source
  KAKENHI-PROJECT-17018026
[Presentation] Helicobacter pylori isolated from Japan : genome sequences of 4 strains characterized by comparison with others2009
- Author(s)
  河合幹彦、内山郁夫、矢原耕史、古田芳一、鶴剛史、半田直史、高橋規子、大島健志朗、服部正平、吉田優、東健、小林一三
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜、横浜(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Systematic approach for large-scale microbial comparative genomics2009
- Author(s)
  内山郁夫
- Organizer
  The 4^<th> Global COE International Symposium 2009 joint with the 19^<th> Hot Spring Harbor Symposium "Molecular Evolution and Bioinformatics"
- Place of Presentation
  九州大学(福岡県)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] 大規模比較ゲノム解析の推進に向けて:比較ゲノムワークベンチRECOGの開発と、ピロリ菌東アジア株ゲノム解析への応用2009
- Author(s)
  内山郁夫
- Organizer
  第11回日本進化学会大会
- Place of Presentation
  北海道大学(北海道)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] 大量シーケンス時代の比較ゲノムインフォマティクス2009
- Author(s)
  内山郁夫
- Organizer
  日本遺伝学会第81回大会
- Place of Presentation
  信州大学(長野県)
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] Complete genome sequences of four Japanese H.pylori strains and their comparative analyses.2009
- Author(s)
  Ichizo Kobayashi, Mikihiko Kawai, Koji Yahara, Yoshikazu Furuta, Takeshi Tsuru, Naofumi Handa, Noriko Takahashi, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama.
- Organizer
  Sapporo Cancer Seminar 2009 (SCS2009)
- Place of Presentation
  Sapporo(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] Systematic approach for large-scale microbial comparative genomics2009
- Author(s)
  内山郁夫
- Organizer
  The 4^<th> Global COE International Symposium 2009 joint with the 19^<th> Hot Spring Harbor Symposium Molecular Evolution and Bioinformatics
- Place of Presentation
  九州大学,福岡
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] Complete genome sequences of multiple Japanese Helicobacter pylori strains : a progress report.2009
- Author(s)
  Ichizo Kobayashi, Mikihiko Kawai, Koji Yahara, Yoshikazu Furuta, Takeshi Tsuru, Naofumi Handa, Noriko Takahashi, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama
- Organizer
  CHRO 2009 : 15th International Workshop on Campylobacter, Helicobacter and Related Organisms
- Place of Presentation
  Toki Messe, Niigata, Japan
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] ピロリ菌10株のゲノム比較によるゲノム再編の検出2009
- Author(s)
  古田芳一、河合幹彦、矢原耕史、大島健志朗、高橋規子、半田直史、吉田優、東健、服部正平、内山郁夫、小林一三
- Organizer
  第32回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜、横浜(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 大規模比較ゲノム解析の推進に向けて:比較ゲノムワークベンチRECOGの開発と、ピロリ菌東アジア株ゲノム解析への応用2009
- Author(s)
  内山郁夫
- Organizer
  第11回日本進化学会大会
- Place of Presentation
  北海道大学,札幌
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] Complete genome sequences of multiple Japanese Helicobacter pylori strains: a progress report2009
- Author(s)
  I Kobayashi, et al., I Uchiyama
- Organizer
  CHRO 2009 15th International Workshop on Campylobacter, Helicobacter and Related Organisms(招待講演)
- Place of Presentation
  Toki Messe,Niigata.
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] East Asian Helicobacter pylori Genomes : Co-evolution with their Human Host.2009
- Author(s)
  Mikihiko Kawai, Koji Yahara, Yoshikazu Furuta, Takeshi Tsuru, Naofumi Handa, Noriko Takahashi, Kenshiro Oshima, Masaru Yoshida, Takeshi Azuma, Masahira Hattori, Ikuo Uchiyama, Ichizo Kobayashi
- Organizer
  Global COE Workshop on Bioinforxnatics in the Era of "Genome Information Big Bang"
- Place of Presentation
  Shenzhen, China
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] 日本分離ピロリ菌4株のゲノム配列決定と他株との比較によるその特徴づけ2009
- Author(s)
  河合幹彦、内山郁夫、矢原耕史、古田芳一、鶴剛史、半田直史、高橋規子、大島健志朗、服部正平、吉田優、東健、小林一三
- Organizer
  第11回日本進化学会大会(札幌大会)
- Place of Presentation
  北海道大学高等教育機能開発総合センター、札幌(ポスター発表)
- Data Source
  KAKENHI-PROJECT-21370001
[Presentation] CoreAligner : Multiple genome alignment for identifying the genomic core among moder ately related microbial genomes2008
- Author(s)
  Ikuo Uchiyama
- Organizer
  19th International Conference on Genome Informatics
- Place of Presentation
  Marriot Surfers Paradise (Gold Coast, Australia)
- Year and Date
  2008-12-01
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] CoreAligner : Multiple genome alignment for identifying the genomic core among moderately related microbial genomes2008
- Author(s)
  内山郁夫
- Organizer
  19th International Conference on Genome Informatics
- Place of Presentation
  Marriot Surfers Paradise, Gold Coast, Australia
- Year and Date
  2008-12-01
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] ゲノム進化過程の解明に向けた近縁細菌ゲノムのインフォマティクス2008
- Author(s)
  内山郁夫
- Organizer
  第10回日本進化学会大会
- Place of Presentation
  東京大学駒場キャンパス
- Year and Date
  2008-08-24
- Data Source
  KAKENHI-PROJECT-20310125
[Presentation] Multiple genome alignment for identifying the genomic core among moderately related microbial genomes2008
- Author(s)
  Ikuo Uchiyama
- Organizer
  The Eighth NIBB -EMBL Meeting "Evolution : genomes, cell types and shapes"
- Place of Presentation
  岡崎コンファレンスセンター
- Year and Date
  2008-11-22
- Data Source
  KAKENHI-PROJECT-20310125

1. KOBAYASHI Ichizo (30126057)

# of Collaborated Projects: 4 results

# of Collaborated Products: 39 results
2. 藤田知道 (50322631)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
3. KUROKAWA Ken (20343246)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. HIRAKAWA Hideki (80372746)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. 村田隆 (00242024)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. KUHARA Satoru (00153320)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. HANDA Naofumi (00396855)

# of Collaborated Projects: 1 results

# of Collaborated Products: 25 results
8. TAKAHASHI Noriko (70466829)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. MIKIHIKO Kawai (80451904)

# of Collaborated Projects: 1 results

# of Collaborated Products: 39 results
10. FURUTA Yoshikazu (40613667)

# of Collaborated Projects: 1 results

# of Collaborated Products: 38 results
11. SUYAMA Mikita (70452365)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. Nakai Ryosuke (90637802)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
13. 長谷部光泰 (40237996)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 日渡祐二 (10373193)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 山崎康裕 (40598471)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 紫加田知幸 (40603048)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
17. 伊福健太郎 (50359783)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 菓子野康浩 (20221872)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. KOJI Yahara

# of Collaborated Projects: 1 results

# of Collaborated Products: 22 results
20. MASAKI Fukuyo

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 佐藤良勝

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. JANUSZ Bujnicki

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 小林規子

# of Collaborated Projects: 0 results

# of Collaborated Products: 37 results

UCHIYAMA Ikuo 内山 郁夫

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実用モデル珪藻の光環境応答・適応機構の最適化Ongoing

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ヘテロカプサ赤潮はなぜ貝類のみをへい死させるか―不安定毒素の全容解明への挑戦－Ongoing

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Comprehensive analysis of the role of horizontal gene transfer in prokaryotic genome evolution based on comparative genome analysisPrincipal Investigator

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Development of a method for core genome identification as a basis for microbial comparative genomicsPrincipal Investigator

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ゲノム比較解析システムの構築Principal Investigator

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ゲノム比較解析システムの構築Principal Investigator

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UCHIYAMA Ikuo 内山郁夫