OKADA MARIKO 岡田眞里子

… Alternative Names

OKADA Mariko 岡田眞里子

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Researcher Number	10342833
Other IDs	https://orcid.org/0000-0002-6210-8223
Affiliation (Current)	2025: 大阪大学, 蛋白質研究所, 教授
Affiliation (based on the past Project Information) *help	2018 – 2024: 大阪大学, 蛋白質研究所, 教授 2016 – 2017: 大阪大学, たんぱく質研究所, 教授 2015: 国立研究開発法人理化学研究所, 統合生命医科学研究センター, チームリーダー 2011 – 2012: 独立行政法人理化学研究所, 細胞システムモデル化研究チーム, チームリーダー
Review Section/Research Field	Principal Investigator Medium-sized Section 50:Oncology and related fields / Biological Sciences / Constructive Systems Biology / Bioinformatics/Life informatics Except Principal Investigator Basic Section 57030:Conservative dentistry-related / Basic Section 48040:Medical biochemistry-related / Basic Section 56060:Ophthalmology-related / Biological Sciences
Keywords	Principal Investigator 数理モデル / シグナル伝達 / がん / 転写制御 / 乳がん / パラメータ推定 / 大規模数理モデル / ネットワーク / 細胞周期 / ゲノムデータ … More / 予測 / シミュレーション / TNBC / 癌 / 免疫学 / NF-kappaB / 転写因子 / アトピー性皮膚炎 / 感染症 / アダプテーション / 発現制御 / 代謝 / エンハンサー / ライブセルイメージング / クロマチン / B細胞 / オミクス / NF-kB / 免疫応答 / 炎症 / システム生物 / 分子動態 / オミクス解析 / 時空間動態 / 単一細胞計測 / 細胞ネットワーク / エストロゲン受容体 / 細胞不均一性 … More Except Principal Investigator 数理モデル / オミクス解析 / 歯周病 / 単球 / オミクス / 病態遷移 / フィードバック / 3次元臓器 / YAPメカノホメオスターシス / 動物モデル / 脆弱性 / 統合解析 / 網膜神経節細胞 / 緑内障 / 遺伝子発現解析 / マウス歯周病細菌叢 / オミックス解析 / 重症化予測 / 歯周病進行経路 / 歯槽骨吸収 / 細菌叢解析 / マウスモデル / マイクロバイオーム / RNAシークエンス / 歯周病重症化予測 / オミクス計測 / 代謝 / 代謝アダプテーション / トランスオミクス Less

Mechanistic analysis of pathogenesis by systems analysis of YAP activation dynamics regulation
- Principal Investigator
  
  清木誠
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 48040:Medical biochemistry-related
- Research Institution
  Yamaguchi University
数理モデルに基づく歯周病の病態遷移機序の解明
- Principal Investigator
  
  藤原千春
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 57030:Conservative dentistry-related
- Research Institution
  Osaka University
Exploring glaucoma damage signaling pathways involved in vulnerability by retinal ganglion cells using integrated analysis
- Principal Investigator
  
  Omodaka Kazuko
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 56060:Ophthalmology-related
- Research Institution
  Tohoku University
Prediction of periodontal disease progression by a mathematical model
- Principal Investigator
  
  Fujihara Chiharu
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 57030:Conservative dentistry-related
- Research Institution
  Osaka University
Development of a mathematical modeling platform of gene networks for understanding disease mechanismsPrincipal Investigator
- Principal Investigator
  
  Okada Mariko
- Project Period (FY)
  2018 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 50:Oncology and related fields
- Research Institution
  Osaka University
Metabolic adaptation of inflammatory diseasesPrincipal Investigator
- Principal Investigator
  
  OKADA MARIKO
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
Trans-omic analysis of metabolic adaptation
- Principal Investigator
  
  Kueoda Shinya
- Project Period (FY)
  2017 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
NF-κBの振動による細胞制御の原理の解明Principal Investigator
- Principal Investigator
  
  岡田眞里子
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Constructive Systems Biology
- Research Institution
  Osaka University
  Institute of Physical and Chemical Research
Modeling of cellular heterogeneity of drug resistancePrincipal Investigator
- Principal Investigator
  
  OKADA Mariko
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The Institute of Physical and Chemical Research

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 2013 2012 2011

All Journal Article Presentation Book Patent

[Book] Quantitative imaging analysis of NF-κB for mathematical modelling applications. Computational Modeling of Signaling Networks (Edited by Lan Nguyen).2020
- Author(s)
  Johannes Nicolaus Wibisana, Takehiko Inaba, Yasushi Sako, Mariko Okada
- Publisher
  Methods in Molecular Biology, Springer Nature.
- Data Source
  KAKENHI-PLANNED-17H06302
[Book] Quantitative imaging analysis of NF-κB for mathematical modelling applications. Computational Modeling of Signaling Networks (Edited by Lan Nguyen).2020
- Author(s)
  Johannes Nicolaus Wibisana, Takehiko Inaba, Yasushi Sako, Mariko Okada
- Publisher
  Methods in Molecular Biology, Springer Nature
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Omics-Based Mathematical Modeling Unveils Pathogenesis of Periodontitis in an Experimental Murine Model2023
- Author(s)
  Fujihara C, Murakami K, Magi S, Motooka D, Nantakeeratipa N, Canela A, Tanaka RJ, Okada M, Murakami S
- Journal Title
  
  J Dent Res
  
  Volume: 102 (13) Pages: 1468-1477
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K27771
[Journal Article] Systems approaches to investigate the role of NF-κB signaling in aging2022
- Author(s)
  Masatoshi Haga, Mariko Okada
- Journal Title
  
  Biochemical Journal
  
  Volume: 479 Issue: 2 Pages: 161-183
- DOI
  10.1042/bcj20210547
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers.2022
- Author(s)
  Johannes N. Wibisana, Takehiko Inaba, Hisaaki Shinohara, Noriko Yumoto, Tetsutaro Hayashi, Mana Umeda, Masashi Ebisawa, Itoshi Nikaido, Yasushi Sako, Mariko Okada
- Journal Title
  
  PLoS Genetics
  
  Volume: 18
- DOI
  10.1101/2021.07.13.452147
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Protocol for stratification of triple-negative breast cancer patients using in silico signaling dynamics2022
- Author(s)
  Hiroaki Imoto, Sawa Yamashiro, Ken Murakami, Mariko Okada. Protocol for stratification of triple-negative breast cancer patients using in silicosignaling dynamics.
- Journal Title
  
  STAR Protoc
  
  Volume: 3 Issue: 3 Pages: 101619-101619
- DOI
  10.1016/j.xpro.2022.101619
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-20J20192
[Journal Article] Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers2022
- Author(s)
  Wibisana Johannes N.、Inaba Takehiko、Shinohara Hisaaki、Yumoto Noriko、Hayashi Tetsutaro、Umeda Mana、Ebisawa Masashi、Nikaido Itoshi、Sako Yasushi、Okada Mariko
- Journal Title
  
  PLOS Genetics
  
  Volume: 18 Issue: 6 Pages: 1010235-1010235
- DOI
  10.1371/journal.pgen.1010235
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05245, KAKENHI-PROJECT-19H05647, KAKENHI-ORGANIZER-17H06299
[Journal Article] Systems biology of protein network2022
- Author(s)
  Mariko Okada
- Journal Title
  
  Biophys Rev
  
  Volume: 14 Issue: 6 Pages: 1231-1232
- DOI
  10.1007/s12551-022-01023-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] A text-based computational framework for patient-specific modeling for classification of cancers2022
- Author(s)
  Hiroaki Imoto, Sawa Yamashiro, Mariko Okada
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 3 Pages: 103944-103944
- DOI
  10.1016/j.isci.2022.103944
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-20J20192
[Journal Article] Mathematical Modeling and Transcriptome Profiling of Breast Cancer Cells During Tamoxifen Treatment Reveal Multiple Trajectories for Resistant Subtypes2021
- Author(s)
  Magi Shigeyuki、Ki Sewon、Ukai Masao、Naito Atsuhiko、Suzuki Yutaka、Okada Mariko
- Journal Title
  
  Research Square
  
  Volume: -
- DOI
  10.21203/rs.3.rs-136924/v1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PUBLICLY-19H04963, KAKENHI-PROJECT-18H04031
[Journal Article] Building patient‐specific models for receptor tyrosine kinase signaling networks2021
- Author(s)
  Ebata Kyoichi、Yamashiro Sawa、Iida Keita、Okada Mariko
- Journal Title
  
  The FEBS Journal
  
  Volume: - Issue: 1 Pages: 90-101
- DOI
  10.1111/febs.15831
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Cell Shape‐Based Chemical Screening Reveals an Epigenetic Network Mediated by Focal Adhesions2021
- Author(s)
  Kanazawa Tomomi、Michida Hiroki、Uchino Yuki、Ishihara Akari、Zhang Suxiang、Tabata Sho、Suzuki Yutaka、Imamoto Akira、Okada Mariko
- Journal Title
  
  The FEBS Journal
  
  Volume: - Issue: 19 Pages: 5613-5628
- DOI
  10.1111/febs.15840
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17KK0199, KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Reengineering protein-phosphorylation switches2021
- Author(s)
  Boris N Kholodenko, Mariko Okada
- Journal Title
  
  Science
  
  Volume: 373 Issue: 6550 Pages: 25-26
- DOI
  10.1126/science.abj5028
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells2021
- Author(s)
  Minami Ando, Shigeyuki Magi, Masahide Seki, Yutaka Suzuki, Takeya Kasukawa, Diane Lefaudeux, Alexander Hoffmann, Mariko Okada
- Journal Title
  
  NPJ systems biology and applications
  
  Volume: 7 Issue: 1 Pages: 1-15
- DOI
  10.1038/s41540-021-00204-7
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] A combination approach of pseudotime analysis and mathematical modeling for understanding drug-resistant mechanisms.2021
- Author(s)
  Shigeyuki Magi, Sewon Ki, Masao Ukai, Elisa Dominguez-Huettinger, Atsuhiko Naito, Yutaka Suzuki, Mariko Okada.
- Journal Title
  
  Sci Rep
  
  Volume: 11 Issue: 1 Pages: 18511-18511
- DOI
  10.1038/s41598-021-97887-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-20K15782
[Journal Article] A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data?Application to the ErbB Receptor Signaling Pathway2020
- Author(s)
  Imoto Hiroaki、Zhang Suxiang、Okada Mariko
- Journal Title
  
  Cancers
  
  Volume: 12 Issue: 10 Pages: 2878-2878
- DOI
  10.3390/cancers12102878
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-20J20192
[Journal Article] The number of transcription factors at an enhancer determine switch-like gene expression.2020
- Author(s)
  Hiroki Michida, Hiroaki Imoto, Hisaaki Shinohara, Noriko Yumoto, Masahide Seki, Mana Umeda, Tetsutaro Hayashi, Itoshi Nikaido, Kasukawa Takeya, Yutaka Suzuki, Mariko Okada-Hatakeyama.
- Journal Title
  
  Cell Reports
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302
[Journal Article] The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression2020
- Author(s)
  Michida Hiroki、Imoto Hiroaki、Shinohara Hisaaki、Yumoto Noriko、Seki Masahide、Umeda Mana、Hayashi Tetsutaro、Nikaido Itoshi、Kasukawa Takeya、Suzuki Yutaka、Okada-Hatakeyama Mariko
- Journal Title
  
  Cell Reports
  
  Volume: 31 Issue: 9 Pages: 107724-107724
- DOI
  10.1016/j.celrep.2020.107724
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-20J20192
[Journal Article] Essential role of the Crk family-dosage in DiGeorge-like anomaly and metabolic homeostasis.2020
- Author(s)
  Akira Imamoto, Sewon Ki, Leiming Li, Kazunari Iwamoto, Venkat Maruthamuthu, John Devany, Ocean Lu, Tomomi Kanazawa, Suxiang Zhang, Takuji Yamada, Akiyoshi Hirayama, Shinji Fukuda, Yutaka Suzuki, Mariko Okada
- Journal Title
  
  Life Science Alliance
  
  Volume: - Issue: 2 Pages: e201900635-e201900635
- DOI
  10.26508/lsa.201900635
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PLANNED-17H06306, KAKENHI-PUBLICLY-18H04805, KAKENHI-PROJECT-18H04031
[Journal Article] The number of transcription factors at an enhancer determines switch-like gene expression.2020
- Author(s)
  Hiroki Michida, Hiroaki Imoto, Hisaaki Shinohara, Noriko Yumoto, Masahide Seki, Mana Umeda, Tetsutaro Hayashi, Itoshi Nikaido, Kasukawa Takeya, Yutaka Suzuki, Mariko Okada-Hatakeyama.
- Journal Title
  
  Cell Reports
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods2020
- Author(s)
  Kimura Shuhei、Fukutomi Ryo、Tokuhisa Masato、Okada Mariko
- Journal Title
  
  Frontiers in Genetics
  
  Volume: 11
- DOI
  10.3389/fgene.2020.595912
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Computational prediction of the signal-dependent gene expression dynamics by integrating bioinformatics and modeling approaches.2020
- Author(s)
  Sufeng Chiang, Jia-Hsin Huang, Huai-Kuang Tsai, Mariko Okada.
- Journal Title
  
  FEBS Letter
  
  Volume: - Issue: 10 Pages: 1477-1496
- DOI
  10.1002/1873-3468.13757
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Signal-dependent regulation of early-response genes and cell cycle: a quantitative view2019
- Author(s)
  Hiroaki Imoto, Mariko Okada
- Journal Title
  
  Current Opinion in Systems Biology
  
  Volume: -
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes2019
- Author(s)
  Suzuki Toru、Kikuguchi Chisato、Nishijima Saori、Nagashima Takeshi、Takahashi Akinori、Okada Mariko、Yamamoto Tadashi
- Journal Title
  
  Development
  
  Volume: 146 Issue: 4
- DOI
  10.1242/dev.168146
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K07079, KAKENHI-PUBLICLY-17H06018, KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Pulmonary phagocyte-derived NPY controls the pathology of severe influenza virus infection2019
- Author(s)
  Seiki Fujiwara, Midori Hoshizaki, Yu Ichida, Dennis Lex, Etsushi Kuroda, Ken Ishii, Shigeyuki Magi, Mariko Okada, Hiroyuki Takao, Masahiro Gandou, Hirotaka Imai, Ryujiro Hara, Herbert Herzog, Akihiko Yoshimura, Hitoshi Okamura, Josef Penninger, Arthur Slutsky, Stefan Uhlig, Keiji Kuba, and Yumiko Imai
- Journal Title
  
  Nature Microbiology
  
  Volume: 4 Pages: 258-268
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302
[Journal Article] [Regular Paper] Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data2018
- Author(s)
  Kimura Shuhei、Tokuhisa Masato、Okada-Hatakeyama Mariko
- Journal Title
  
  Proc. of the 18th IEEE International Conference on Bioinformatics and Bioengineering
  
  Volume: - Pages: 98-103
- DOI
  10.1109/bibe.2018.00026
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-26330275
[Journal Article] Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers2018
- Author(s)
  Rui Liu, Jinzeng Wang, Masao Ukai, Ki Sewon, Pei Chen, Yutaka Suzuki, Haiyun Wang, Kazuyuki Aihara, Mariko Okada-Hatakeyama, Luonan Chen
- Journal Title
  
  Journal of Molecular Cell Biology
  
  Volume: - Issue: 8 Pages: 1-16
- DOI
  10.1093/jmcb/mjy059
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-15H05707
[Journal Article] Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR22018
- Author(s)
  Ishiguro Soh、Galipon Josephine、Ishii Rintaro、Suzuki Yutaka、Kondo Shinji、Okada-Hatakeyama Mariko、Tomita Masaru、Ui-Tei Kumiko
- Journal Title
  
  RNA Biology
  
  Volume: 15 Issue: 7 Pages: 976-989
- DOI
  10.1080/15476286.2018.1486658
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031, KAKENHI-PROJECT-16J06287, KAKENHI-PROJECT-16H06279
[Journal Article] Pulmonary phagocyte-derived NPY controls the pathology of severe influenza virus infection2018
- Author(s)
  Seiki Fujiwara, Midori Hoshizaki, Yu Ichida, Dennis Lex, Etsushi Kuroda, Ken Ishii, Shigeyuki Magi, Mariko Okada, Hiroyuki Takao, Masahiro Gandou, Hirotaka Imai, Ryujiro Hara, Herbert Herzog, Akihiko Yoshimura, Hitoshi Okamura, Josef Penninger, Arthur Slutsky, Stefan Uhlig, Keiji Kuba, and Yumiko Imai
- Journal Title
  
  Nature Microbiology
  
  Volume: 9 Pages: 460-460
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04031
[Journal Article] Tamoxifen mechanically reprograms the tumor microenvironment via HIF‐1A and reduces cancer cell survival2018
- Author(s)
  Cortes Ernesto、Lachowski Dariusz、Robinson Benjamin、Sarper Muge、Teppo Jaakko S、Thorpe Stephen D、Lieberthal Tyler J、Iwamoto Kazunari、Lee David A、Okada‐Hatakeyama Mariko、Varjosalo Markku T、del R?o Hern?ndez Armando E
- Journal Title
  
  EMBO reports
  
  Volume: 20 Issue: 1
- DOI
  10.15252/embr.201846557
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-17H06302, KAKENHI-PROJECT-18H04031
[Journal Article] Current Status of Mathematical Modeling of Cancer; From the Viewpoint of Cancer Hallmarks.2017
- Author(s)
  Magi S, Iwamoto K, Okada-Hatakeyama, M.
- Journal Title
  
  Current Opinion in Systems Biology.
  
  Volume: 印刷中
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15KT0084
[Journal Article] Oscillation dynamics underlies functional switching of NF-κB for B cell activation.2016
- Author(s)
  Inoue K, Shinohara H, Behar M, Yumoto N, Tanaka G, Hoffmann A, Aihara K, Okada-Hatakeyama M
- Journal Title
  
  npj Systems Biology & Application
  
  Volume: 2 Pages: 16024-16024
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Journal Article] Stimulus-Dependent Inhibitor of Apoptosis Protein Expression Prolongs the Duration of B Cell Signalling.2016
- Author(s)
  Shinohara H, Inoue K, Yumoto N, Nagashima T, Okada-Hatakeyama M.
- Journal Title
  
  Scientific Reports
  
  Volume: 6 Issue: 1 Pages: 27706-27706
- DOI
  10.1038/srep27706
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-15H01195, KAKENHI-PROJECT-15KT0084, KAKENHI-PROJECT-15K08534
[Journal Article] Phase responses of oscillating components in a signaling pathway2013
- Author(s)
  Nomura M, Okada-Hatakeyama M
- Journal Title
  
  Front Physiol
  
  Volume: 2013;4 Pages: 68-68
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] Phase responses of oscillating components in a signaling pathway.2013
- Author(s)
  Nomura M, Okada-Hatakeyama M
- Journal Title
  
  Front Physiol
  
  Volume: 4 Pages: 3389-3389
- DOI
  10.3389/fphys.2013.00068
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] An ErbB receptor-mediated AP-1 regulatory network is modulated by STAT3 and c-MYC during calcium-dependent keratinocyte differentiation.2012
- Author(s)
  Saeki Y., Nagashima T., Kimura S., and Okada-Hatakeyama M.
- Journal Title
  
  Exp. Dermatol.
  
  Volume: 21 Issue: 4 Pages: 293-298
- DOI
  10.1111/j.1600-0625.2012.01453.x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells.2012
- Author(s)
  Hiroshima, M., Saeki, Y., Okada-Hatakeyama, M., and Sako, Y.
- Journal Title
  
  Proc. Natl. Acad. Sci. U.S.A.
  
  Volume: 109 Issue: 35 Pages: 13984-13989
- DOI
  10.1073/pnas.1200464109
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells2012
- Author(s)
  Hiroshima, M., Saeki, Y., Okada-Hatakeyama, M., and Sako, Y
- Journal Title
  
  Proc. Natl. Acad. Sci. U.S.A.
  
  Volume: 109 (35) Pages: 13984-13989
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] An ErbB receptor-mediated AP-1 regulatory network is modulated by STAT3 and c-MYC during calcium-dependent keratinocyte differentiation2012
- Author(s)
  Saeki Y., Nagashima T., Kimura S., and Okada-Hatakeyama M
- Journal Title
  
  Exp. Dermatol
  
  Volume: 21(4) Pages: 293-298
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] Inference of S-system models of genetic networks by solving one-dimensional function optimization problems2012
- Author(s)
  Kimura S., Araki D., Matsumura K., and Okada-Hatakeyama M
- Journal Title
  
  Math. Biosci
  
  Volume: 235(2) Pages: 161-170
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] nference of S-system models of genetic networks by solving one-dimensional function optimization problems.2012
- Author(s)
  Kimura S., Araki D., Matsumura K., and Okada-Hatakeyama M.
- Journal Title
  
  Math. Biosci
  
  Volume: 235 Issue: 2 Pages: 161-170
- DOI
  10.1016/j.mbs.2011.11.008
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154, KAKENHI-PROJECT-23700266
[Journal Article] Catching transcriptional regulation by thermostatistical modeling.2012
- Author(s)
  Till D. F., Cheong, A., Okada-Hatakeyama, M., and Kholodenko, B.N.
- Journal Title
  
  Physical Biology
  
  Volume: 9 Issue: 4 Pages: 45007-45007
- DOI
  10.1088/1478-3975/9/4/045007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] がん細胞情報伝達のダイナミクスとシステムバイオロジー2012
- Author(s)
  岡田眞里子
- Journal Title
  
  応用数理
  
  Volume: 22 (3)
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] Catching transcriptional regulation by thermostatistical modeling2012
- Author(s)
  Till D. F., Cheong, A., Okada-Hatakeyama, M., and Kholodenko, B.N
- Journal Title
  
  Physical Biology
  
  Volume: 9(4) Pages: 45007-45007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] A kinetic model explains increased gefitinib sensitivity associated with Mig6 expression2011
- Author(s)
  Naruo, Y., Nagashima, T., Ushikoshi-Nakayama, R., Saeki, Y., Nakakuki, T., Naka, T., Tanaka, H., Tsai, S-F., and Okada-Hatakeyama, M
- Journal Title
  
  BMC Systems Biology
  
  Volume: 5(1) Pages: 29-29
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] 遺伝子ネットワークのスイッチが細胞運命を決定する2011
- Author(s)
  岡田眞里子
- Journal Title
  
  実験医学増刊
  
  Volume: 29 (12) Pages: 127-132
- Data Source
  KAKENHI-PROJECT-23650154
[Journal Article] A rank-based statistical test for measuring synergistic effects between two gene sets2011
- Author(s)
  Shiraishi Y., Okada-Hatakeyama M., and Miyano S
- Journal Title
  
  Bioinformatics
  
  Volume: 27(17) Pages: 2399-2405
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23650154
[Patent] 腫瘍のサブタイプ決定方法及びその応用、並びにサブタイプ決定のための方法2021
- Inventor(s)
  井元宏明、山城紗和、岡田眞里子
- Industrial Property Rights Holder
  井元宏明、山城紗和、岡田眞里子
- Industrial Property Rights Type
  特許
- Industrial Property Number
  2021-128753
- Filing Date
  2021
- Data Source
  KAKENHI-PROJECT-18H04031
[Patent] 腫瘍のサブタイプ決定方法及びその応用、並びにサブタイプ決定のための方法2021
- Inventor(s)
  井元宏明、山城紗和、岡田眞里子
- Industrial Property Rights Holder
  井元宏明、山城紗和、岡田眞里子
- Industrial Property Rights Type
  特許
- Filing Date
  2021
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 疾患シグナルネットワークの患者固有モデルの構築と応用2023
- Author(s)
  岡田眞里子
- Organizer
  日本生理学会第100回記念大会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Stratification of cancer patients based on the signaling dynamics.2022
- Author(s)
  Mariko Okada
- Organizer
  International Symposium on Evolutionary Genomics and Bioinformatics 2022
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Gene expression heterogeneity arising from signaling networks.2022
- Author(s)
  Mariko Okada
- Organizer
  INSERM-JSPS Joint Seminar
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Stratification of cancer patients based on the signaling dynamics.2022
- Author(s)
  Mariko Okada
- Organizer
  International Symposium on Evolutionary Genomics and Bioinformatics 2022. Co-hosted with the Institute for Protein Research (IPR) , Osaka University
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 数理モデルを用いた歯周病重症化の病因解明2022
- Author(s)
  藤原　千春、Teerachate Nantakeeratipat, 井元　宏明、岡田　眞里子、村上　伸也
- Organizer
  第43回日本炎症・再生医学会
- Data Source
  KAKENHI-PROJECT-20H03864
[Presentation] 数理モデリングは本当に役に立つのか？臨床データ解析編2022
- Author(s)
  岡田眞里子
- Organizer
  第433回CBI学会講演会　CBI学会関西部会
- Invited
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Gene expression heterogeneity arises from signaling networks2022
- Author(s)
  Mariko Okada
- Organizer
  ICSB 2022 Berlin
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Pasmopy: Patient-Specific Modeling in Python for Classification of Cancers2022
- Author(s)
  Mariko Okada
- Organizer
  The 8th Conference on Systems Biology of Mammalian cells
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 臨床オミクスを用いた患者固有シミュレーション基盤と今後の展望2022
- Author(s)
  岡田眞里子
- Organizer
  2022年日本バイオインフォマティクス学会年会第1１回生命医薬情報学連合大会
- Invited
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Osaka University WPI Premium Research Institute for Human Metaverse Medicine Kick-off Symposium2022
- Author(s)
  Mariko Okada
- Organizer
  Patient-specific Modeling of Human Diseases.
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Modeling cell-cell heterogeneity from a signaling network2022
- Author(s)
  Mariko Okada
- Organizer
  IBS BIMAG seminar
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] NF-κB転写制御におけるデジタル応答のメカニズム解明2022
- Author(s)
  岡田眞里子
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] バイオDXを支える誰にでも使いやすい細胞モデリング基盤の構築と応用2021
- Author(s)
  岡田眞里子
- Organizer
  バイオDXの最前線JST CREST キックオフシンポジウム
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 細胞シミュレーションによる患者固有モデルの構築2021
- Author(s)
  岡田眞里子
- Organizer
  大阪大学数理・データ科学教育研究センター主催講演会「医学研究における数理的方法」
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] A computational platform for mathematical modeling of cancer networks2021
- Author(s)
  Mariko Okada
- Organizer
  The international Chemical Congress of Pacific Basin
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] A computational platform for mathematical modeling of cancer networks.2021
- Author(s)
  Mariko Okada
- Organizer
  The international Chemical Congress of Pacific Basin Societies (PacifiChem)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 細胞AI学習に基づくがん増殖メカニズム同定法の開発2021
- Author(s)
  岡田眞里子
- Organizer
  上原記念生命科学財団研究計画発表会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 個別化医療に向けた臨床オミクスデータの数理モデルへの適用2021
- Author(s)
  岡田眞里子
- Organizer
  第47回東北眼疾患病態研究会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 個別化医療に向けた臨床オミクスデータの数理モデルへの適用2021
- Author(s)
  岡田眞里子
- Organizer
  第47回東北眼疾患病態研究会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 細胞シミュレーションによる患者固有モデルの構築2021
- Author(s)
  岡田眞里子
- Organizer
  大阪大学数理・データ科学教育研究センター主催講演会「医学研究における数理的方法」
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞制御メカニズム理解のための数理モデル構築とツール開発2020
- Author(s)
  岡田眞里子
- Organizer
  第16回生物数学の理論とその応用ー生命現象の定量的理解に向けてー
- Invited
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] オミクス解析を用いた歯周病による組織破壊機構の理解2020
- Author(s)
  藤原千春, Teerachate Nantakeeratipat, Wibisana, Johannes Nicolaus, 飯田渓太, 井元宏明, 岡田眞里子、村上伸也
- Organizer
  第43回日本分子生物学会
- Data Source
  KAKENHI-PROJECT-20H03864
[Presentation] Prediction and validation of NF-kB mediated gene expression mechanisms in B cells using bulk and single cell sequencing data2020
- Author(s)
  Mariko Okada
- Organizer
  8th Annual Meeting of the International Cytokine & Interferon Society
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Prediction and validation of NF-kB mediated gene expression mechanisms in B cells using bulk and single cell sequencing data2020
- Author(s)
  Mariko Okada
- Organizer
  8th Annual Meeting of the International Cytokine & Interferon Society
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Reclassification of cancer subtypes based on the dynamic cell behaviors2020
- Author(s)
  Mariko Okada
- Organizer
  The 1st International Symposium on Human InformatiX
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Building a mathematical model of periodontal disease2020
- Author(s)
  Teerachate Nantakeeratipat, Chiharu Fujihara, Johannes Nicolaus Wibisana, Hiroaki Imoto, Keita Iida, Mariko Okada and Shinya Murakami
- Organizer
  第43回日本分子生物学会
- Data Source
  KAKENHI-PROJECT-20H03864
[Presentation] Reclassification of cancer subtypes based on the dynamic cell behaviors2020
- Author(s)
  Mariko Okada
- Organizer
  The 1st International Symposium on Human InformatiX
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative analysis of immune response using Omics and imaging2019
- Author(s)
  Mariko Okada
- Organizer
  1st International Symposium on Inflammation Cellular Society
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Model-based understanding of cell proliferation2019
- Author(s)
  Mariko Okada
- Organizer
  The 42nd Annual Meeting of the Molecular Biology Society of Japan
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative evaluation of kinase activities and transcriptional regulation using mathematical model2019
- Author(s)
  岡田　眞里子
- Organizer
  第92回日本薬理学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative analysis of biological networks using mathematical models2019
- Author(s)
  Mariko Okada
- Organizer
  The 9th International Congress on Industrial and Applied Mathematics (ICIAM 2019) The CJK-SIAMs joint mini-symposium on Mathematical Biology
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative evaluation of kinase activities and transcriptional regulation using mathematical model2019
- Author(s)
  岡田眞里子
- Organizer
  第92回日本薬理学会年会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Analyze immune response using Omics and imaging2019
- Author(s)
  Mariko Okada
- Organizer
  The 3rd International Symposium for Trans-Omics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Analyze Omics data using kinetic model2019
- Author(s)
  Mariko Okada
- Organizer
  The 57th Annual Meeting of the Biophysical Society of Japan
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Analyze Omics data using kinetic model2019
- Author(s)
  Mariko Okada
- Organizer
  The 57th Annual Meeting of the Biophysical Society of Japan
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative analysis of immune response using Omics and imaging.2019
- Author(s)
  Mariko Okada
- Organizer
  1st International Symposium on Inflammation Cellular Society
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative analysis of biological networks using mathematical models2019
- Author(s)
  Mariko Okada
- Organizer
  The 9th International Congress on Industrial and Applied Mathematics (ICIAM 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Analyze immune response using Omics and imaging2019
- Author(s)
  Mariko Okada
- Organizer
  The 3rd International Symposium for Trans-Omics
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞制御メカニズム理解のための数理モデル構築とツール開発2019
- Author(s)
  岡田眞里子
- Organizer
  第16回生物数学の理論とその応用ー生命現象の定量的理解に向けてー
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Model-based understanding of cell proliferation2019
- Author(s)
  Mariko Okada
- Organizer
  The 42nd Annual Meeting of the Molecular Biology Society of Japan
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Cooperative mechanism in epigenetic network controls gene expression quantity2019
- Author(s)
  Mariko Okada
- Organizer
  Bioinformatics Seminar, Academia Sinica, Taiwan
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Cooperative mechanism in epigenetic network controls gene expression quantity2019
- Author(s)
  Mariko Okada
- Organizer
  Bioinformatics Seminar, Academia Sinica, Taiwan
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Integrative analysis to reveal transcriptional regulation of NF-kB2018
- Author(s)
  Mariko Okada
- Organizer
  IMS-JSI International Symposium on Immunology 2018 "Checkpoint in medical science and its technology
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative transcriptional control of NF-kB2018
- Author(s)
  Mariko Okada
- Organizer
  ISMB 2018, Chicago
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞ネットワークの数理モデリングと疾患研究への応用2018
- Author(s)
  岡田眞里子
- Organizer
  公開シンポジウム「医療情報分析の実際」
- Invited
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Biological significance of the oscillatory dynamics of NF-kB for target gene expression2018
- Author(s)
  Minami Ando, Shigeyuki Magi, Kazunari Iwamoto, Mariko Okada
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Integrative analysis to reveal transcriptional regulation of NF-kB2018
- Author(s)
  Mariko Okada
- Organizer
  IMS-JSI International Symposium on Immunology 2018 "Checkpoint in medical science and its technology
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Experimental Validation of a Mathematical Model of ErbB Receptor Signaling to Cell Cycle2018
- Author(s)
  Kyoichi Ebata, Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada-Hatakeyama
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞ネットワークの数理モデリングと疾患研究への応用2018
- Author(s)
  岡田　眞里子
- Organizer
  公開シンポジウム「医療情報分析の実際」
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Predictions of cellular responses with a mathematical model integrating ErbB signaling and cell cycle2018
- Author(s)
  Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada
- Organizer
  第91回日本生化学会大会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative analysis of transcriptional regulation2018
- Author(s)
  Mariko Okada
- Organizer
  Seminar at Chinese Academy of Sciences, Shanghai
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] An input-output relationship of signaling-epigenetic regulation. Symposium on Chromosome Biology and Cell Signalling.2018
- Author(s)
  Mariko Okada
- Organizer
  Joint IPR Seminar by IISER TVM and Osaka Univ.
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Time-series analysis on the process of acquiring resistance for estrogen receptor antagonist in breast cancer cells2018
- Author(s)
  Shigeyuki Magi, Sewon Ki, Masao Ukai, Yutaka Suzuki, Mariko Okada
- Organizer
  3rd Symposium on Complex Biodynamics & Networks
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Crk遺伝子ファミリーによる細胞機能制御の統合的解析2018
- Author(s)
  金沢朋実, 岩本一成, 間木重行, 張素香, 今本公, 岡田眞里子
- Organizer
  第91回日本生化学会大会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] NF-kB - p38 MAPK crosstalk mechanism regulating gene expression dynamics2018
- Author(s)
  Hiroki Michida, Minami Ando, Shigeyuki Magi, Mariko Okada
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 乳がんのタモキシフェン耐性獲得過程の時系列解析2018
- Author(s)
  間木重行, 奇世媛, 鵜飼正雄, 鈴木穣, 岡田眞里子
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Signal-dependent transcriptional regulation for cell fate control2018
- Author(s)
  Mariko Okada
- Organizer
  3rd Symposium on Complex Biodynamics & Networks
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Understanding biological systems from multi-order kinetics2018
- Author(s)
  岡田眞里子
- Organizer
  第91回日本生化学会大会「多次元速度論からの生物の理解」
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Model-based prediction of ErbB signaling activities on cell cycle entry2018
- Author(s)
  Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Time-sries analysis on the process of acquiring tamoxifen resistance in breast cancer cells2018
- Author(s)
  Shigeyuki Magi, Yutaka Suzuki, Mariko Okada
- Organizer
  第77回日本癌学会学術総会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative transcriptional control of NF-kB2018
- Author(s)
  Mariko Okada
- Organizer
  ISMB 2018, Chicago
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Understanding biological systems from multi-order kinetics2018
- Author(s)
  Mariko Okada
- Organizer
  第91回日本生化学会大会「多次元速度論からの生物の理解」
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Systems biology of signaling network2018
- Author(s)
  Mariko Okada
- Organizer
  Seminar at Centre for Molecular Medicine, Jawaharlal Nehru University
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Modeling of signal-transcriptional network2018
- Author(s)
  Mariko Okada
- Organizer
  18th World Congress of Basic and Clinical Pharmacology (WCP2018 Kyoto)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Modeling of signal-transcriptional network2018
- Author(s)
  Mariko Okada
- Organizer
  18th World Congress of Basic and Clinical Pharmacology (WCP2018 Kyoto)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 細胞システム解析の考え方と基礎・応用2018
- Author(s)
  岡田　眞里子
- Organizer
  第16回日本糖鎖科学コンソーシアムシンポジウム
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Biological significance of the oscillatory dynamics of NF-kB for target gene expression2018
- Author(s)
  Minami Ando, Shigeyuki Magi, Kazunari Iwamoto, Mariko Okada
- Organizer
  第91回日本生化学会大会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Quantitative transcriptional control of NF-kB2018
- Author(s)
  Mariko Okada
- Organizer
  Seminar at UCLA Biology Institute
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative Transcription Control Mediated by Signaling Network2018
- Author(s)
  Mariko Okada
- Organizer
  The 19th International Conference on Systems Biology (ICSB 2018)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞システム解析の考え方と基礎・応用2018
- Author(s)
  岡田眞里子
- Organizer
  第16回日本糖鎖科学コンソーシアムシンポジウム
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative analysis of transcriptional regulation2018
- Author(s)
  Mariko Okada
- Organizer
  Seminar at Chinese Academy of Sciences, Shanghai
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Investigation of the crosstalk mechanism between two damped oscillators, NF-kB and p38 MAP kinase2018
- Author(s)
  Hiroki Michida, Minami Ando, Kazunari Iwamoto, Shigeyuki Magi, Mariko Okada
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Data-driven modelling of cellular network2018
- Author(s)
  Mariko Okada
- Organizer
  The 2018 International Conference on Computational Systems B Biology (ISB 2018)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Dynamics and regulatory principles of biological networks2018
- Author(s)
  Mariko Okada
- Organizer
  蛋白研６０週年記念講演会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Mechanisms of biphasic transcriptional responses in cell fate regulation2018
- Author(s)
  Mariko Okada
- Organizer
  RIKEN Center for Sustainable Resource Science (CSRS) Seminar
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Quantitative Transcription Control Mediated by Signaling Network2018
- Author(s)
  Mariko Okada
- Organizer
  The 19th International Conference on Systems Biology (ICSB 2018)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Modeling and Omics analysis of NF-kB system2018
- Author(s)
  Mariko Okada
- Organizer
  'IPR Seminar "BioNetworks in Health and Diseases"
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 炎症疾患の代謝アダプテーション2018
- Author(s)
  岡田　眞里子
- Organizer
  新学術研究「代謝オミクス」第2回　領域会議
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Modeling and Omics analysis of NF-kB system2018
- Author(s)
  Mariko Okada
- Organizer
  'IPR Seminar "BioNetworks in Health and Diseases"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Data-driven modelling of cellular network2018
- Author(s)
  Mariko Okada
- Organizer
  The 2018 International Conference on Computational Systems B Biology (ISB 2018)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Signal-dependent transcriptional regulation for cell fate control2018
- Author(s)
  Mariko Okada
- Organizer
  3rd Symposium on Complex Biodynamics & Networks
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] Dynamics and regulatory principles of biological networks2018
- Author(s)
  岡田眞里子
- Organizer
  蛋白研６０週年記念講演会
- Data Source
  KAKENHI-PROJECT-18H04031
[Presentation] 細胞形態と代謝を繋ぐシグナル軸の同定.2017
- Author(s)
  岡田眞里子
- Organizer
  アステラス病態代謝研究会　平成29年度研究報告会
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] システムバイオロジーと創薬2017
- Author(s)
  岡田眞里子
- Organizer
  バイオグリッド研究会2017　～AI、シミュレーション、システムバイオロジーと創薬～
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Analysis of Omics data using kinetic model2017
- Author(s)
  Mariko Okada
- Organizer
  Seminar at Dept. of Bioengineering, Imperial College London
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞モデリングとAI - オミクス研究から実用的システム生物学の構築へ-2017
- Author(s)
  岡田眞里子
- Organizer
  ConBio2017
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] NF-kappaB転写因子の動態と機能2017
- Author(s)
  岡田眞里子
- Organizer
  九州大学生体防御制御研究所セミナー
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] オミクスと数理モデリングによる細胞制御機構の解明2017
- Author(s)
  岡田眞里子
- Organizer
  23th Cardiovascular Metabolism and Aging Conference
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] システムバイオロジーとバイオデータベース2017
- Author(s)
  岡田眞里子
- Organizer
  NBDCワークショップ
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] シグナル伝達の数理モデル化と細胞変換2017
- Author(s)
  岡田眞里子
- Organizer
  新学術領域「数理シグナル」第１回若手ワークショップ
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Trans-Omics analysis of NF-kappaB regulation2017
- Author(s)
  Mariko Okada
- Organizer
  CREST & Scientific Research on Innovative Areas Symposium. “The 1st International Symposium for Trans-Omics”
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] 細胞の形態と代謝ネットワーク2017
- Author(s)
  岡田眞里子
- Organizer
  第11回メタボロームシンポジウム
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Mathematical modeling of cancer signaling network.2017
- Author(s)
  Mariko Okada
- Organizer
  The Third Trilateral Workshop for Frontier Protein Studies 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Classic yet unique dynamic properties of NF-kappaB gene regulation2017
- Author(s)
  岡田眞里子
- Organizer
  OIST-JST Joint Seminar
- Invited
- Data Source
  KAKENHI-PLANNED-17H06302
[Presentation] Multiple-scale cooperativity in signal-transcription network for cellular commitment.2016
- Author(s)
  Mariko Okada
- Organizer
  Trans-Omics: New Approaches in Biology and Medicine 2016
- Place of Presentation
  九州大学（福岡県・福岡市）
- Year and Date
  2016-11-02
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] ダイナミクスの分解と合成による細胞ネットワークの理解2016
- Author(s)
  岡田眞里子
- Organizer
  「細胞を創る研究会9.0」
- Place of Presentation
  早稲田大学（東京都・新宿区）
- Year and Date
  2016-11-21
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] シグナル伝達・転写ネットワークの協同性と階層統合.2016
- Author(s)
  岡田眞里子
- Organizer
  CRESTシンポジウム「トランスオミクスによる生命システムの解明」
- Place of Presentation
  東京大学（東京都文京区）
- Year and Date
  2016-03-03
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Experimental and modeling analysis of signal transduction network in mammalian cells.2016
- Author(s)
  Okada-Hatakeyama M
- Organizer
  2016 A3 Workshop on Interdisciplinary Research Connecting Mathematics and Biology.
- Place of Presentation
  北京（中国）
- Year and Date
  2016-04-23
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] システムバイオロジーを用いた免疫シグナル・エピジェネティクスネットワークの理解2016
- Author(s)
  岡田眞里子
- Organizer
  第372回CBI学会講演会　システムバイオロジーの最新動向.
- Place of Presentation
  東京大学（東京都・文京区）
- Year and Date
  2016-05-24
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Switch-like activation of transcription factors in cell decision program.2016
- Author(s)
  Okada-Hatakeyama M
- Organizer
  Lecture at Academia Sinica
- Place of Presentation
  台北（台湾）
- Year and Date
  2016-04-13
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] 数理モデルを用いたプロテオーム・オミクスデータの統合とNF-kBの分子機能2016
- Author(s)
  岡田眞里子
- Organizer
  第89回日本生化学会大会
- Place of Presentation
  仙台国際センター（宮城県・仙台市）
- Year and Date
  2016-09-27
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Experimental and mathematical analysis of signaling network.2016
- Author(s)
  Okada-Hatakeyama M
- Organizer
  Lecture at National Taiwan University
- Place of Presentation
  台北（台湾）
- Year and Date
  2016-04-14
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Mathematical modeling for quantitative understanding of cellular network.2016
- Author(s)
  Mariko Okada
- Organizer
  Japan-Korea Bilateral Symposium on Multi-scale Structural Biology.
- Place of Presentation
  大阪大学（大阪府・吹田市）
- Year and Date
  2016-12-22
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] 細胞制御における転写因子のデジタル活性化.2016
- Author(s)
  岡田眞里子
- Organizer
  第10回　スーパーコンピュータ「京」と創薬・医療の産学連携セミナー - HPCI計算生命科学推進プログラム-バイオシミュレーションの最前線
- Place of Presentation
  グランフロント大阪（大阪府大阪市）
- Year and Date
  2016-01-22
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Experimental and modeling analysis of signal transduction network in mammalian cells.2016
- Author(s)
  Okada-Hatakeyama M
- Organizer
  2016 A3 Workshop on Interdisciplinary Research Connecting Mathematics and Biology
- Place of Presentation
  北京市（中国）
- Year and Date
  2016-04-22
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] 動的セントラルドグマの計算的予測と実験検証.2016
- Author(s)
  岡田眞里子
- Organizer
  第39回日本分子生物学会
- Place of Presentation
  パシフィコ横浜（神奈川県・横浜市）
- Year and Date
  2016-11-30
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Modeling Cellular Signaling Functions in Mammalian Cells. The 4th Bioscience and Biotechnology International Symposium.2016
- Author(s)
  Okada-Hatakeyama M
- Organizer
  Multifaceted Approaches to Disease Intervention
- Place of Presentation
  東京工業大学（神奈川県横浜市）
- Year and Date
  2016-01-13
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] 数理モデルによるオミクスデータの統合と疾患メカニズムの予測.2015
- Author(s)
  岡田眞里子
- Organizer
  第５３回日本生物物理学会年会シンポジウム.
- Place of Presentation
  金沢大学（石川県金沢市）
- Year and Date
  2015-09-13
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Mechanisms of dynamics behaviors of NF-kB signaling in B cell.2015
- Author(s)
  Okada-Hatakeyama M
- Organizer
  16th International Conference of Systems Biology (ICSB)
- Place of Presentation
  シンガポール
- Year and Date
  2015-11-24
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] CAGEを使ってシグナル伝達－転写ネットワークを解剖する.2015
- Author(s)
  岡田眞里子
- Organizer
  理研公開シンポジウム「転写産物解析を使って疾患を研究する」
- Place of Presentation
  理化学研究所（神奈川県横浜市）
- Year and Date
  2015-09-03
- Invited
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] Data-based modeling of signal-transcription network for cell fate control.2015
- Author(s)
  Okada-Hatakeyama M
- Organizer
  BioNetVista Workshop-ICSB2015
- Place of Presentation
  シンガポール
- Year and Date
  2015-11-25
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15KT0084
[Presentation] A switch in NF-kappa B signaling2013
- Author(s)
  Mariko Okada
- Organizer
  The first annual Winter q-Bio Meeting
- Place of Presentation
  Hawaii, USA (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] A switch in NF-kappa B signaling.2013
- Author(s)
  Mariko Okada
- Organizer
  The first annual Winter q-Bio Meeting
- Place of Presentation
  Hawaii, USA
- Invited
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] 実験と計算による細胞情報処理機構の同定.2012
- Author(s)
  岡田眞里子
- Organizer
  情報処理学会バイオ情報学研究会 (SIG BIO)
- Place of Presentation
  飯塚
- Invited
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] シグナル転写ネットワークのダイナミクスと疾病制御2012
- Author(s)
  岡田眞里子
- Organizer
  文部科学省イノベーションシステム整備事業先端融合領域イノベーション創出拠点形成プログラム「翻訳後修飾プロテオミクス医療研究拠点の形成」第4回公開シンポジウムバイオインフォマティクスの最前線
- Place of Presentation
  横浜 (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] シグナル転写ネットワークのダイナミクスと疾病制御.2012
- Author(s)
  岡田眞里子
- Organizer
  文部科学省イノベーションシステム整備事業　先端融合領域イノベーション創出拠点形成プログラム「翻訳後修飾プロテオミクス医療研究拠点の形成」第4回公開シンポジウム　バイオインフォマティクスの最前線
- Place of Presentation
  横浜
- Invited
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] 実験と計算による細胞情報処理機構の同定2012
- Author(s)
  岡田眞里子
- Organizer
  情報処理学会バイオ情報学研究会 (SIG BIO)
- Place of Presentation
  飯塚 (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] シグナル伝達の空間制御と不均一性に関するモデル化の試み2011
- Author(s)
  岡田眞里子
- Organizer
  理研シンポジウム「細胞システムの動態と論理III」
- Place of Presentation
  和光 (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] c-Fos転写因子のスイッチ様活性化を説明するシグナル?転写ネットワークの速度論的解析2011
- Author(s)
  岡田眞里子
- Organizer
  第84回日本生化学会大会
- Place of Presentation
  京都 (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] Identifying logics of signal-transcription network for cellular differentiation2011
- Author(s)
  Mariko Okada
- Organizer
  IFReC / IPR Joint Seminar
- Place of Presentation
  Osaka (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154
[Presentation] 細胞運命を決定する遺伝子ネットワークのスイッチ機構2011
- Author(s)
  岡田眞里子
- Organizer
  ミニシンポジウム : 計算ウイルス学・免疫学の展開
- Place of Presentation
  京都 (招待発表)
- Data Source
  KAKENHI-PROJECT-23650154

1. Fujihara Chiharu (00755358)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
2. 木村周平 (20342777)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
3. 柏木陽一郎 (20598396)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
4. 村上伸也 (70239490)

# of Collaborated Projects: 2 results

# of Collaborated Products: 4 results
5. Kueoda Shinya (50273850)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
6. Omodaka Kazuko (80569583)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. 角田達彦 (10273468)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 馬場健史 (10432444)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
9. 鈴木穣 (40323646)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. 松田史生 (50462734)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
11. 伊藤隆司 (90201326)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
12. 中山敬一 (80291508)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 三木康史 (10598395)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 中澤徹 (30361075)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. 佐藤孝太 (50732327)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. 清木誠 (50226619)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 浅岡洋一 (10436644)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 徳永雅之 (10845043)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 北川孝雄 (20614928)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 田尾嘉誉 (30425417)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 有賀隆行 (30452262)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 岩山智明 (80757865)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. MITOSCH Karin

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 奇世援

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. 湯本範子

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. 岩本一成

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. KHOLODENKO Boris

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
28. 長嶋剛史

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. 井上聡

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
30. TABATA Sho

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
31. 鈴木亨

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
32. 篠原久明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
33. 二階堂愛

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

OKADA MARIKO 岡田 眞里子

OKADA Mariko 岡田 眞里子

Research Projects

Research Products

Co-Researchers

Mechanistic analysis of pathogenesis by systems analysis of YAP activation dynamics regulation

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数理モデルに基づく歯周病の病態遷移機序の解明

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Exploring glaucoma damage signaling pathways involved in vulnerability by retinal ganglion cells using integrated analysis

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Prediction of periodontal disease progression by a mathematical model

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Development of a mathematical modeling platform of gene networks for understanding disease mechanismsPrincipal Investigator

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Metabolic adaptation of inflammatory diseasesPrincipal Investigator

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Trans-omic analysis of metabolic adaptation

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NF-κBの振動による細胞制御の原理の解明Principal Investigator

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Modeling of cellular heterogeneity of drug resistancePrincipal Investigator

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[Book] Quantitative imaging analysis of NF-κB for mathematical modelling applications. Computational Modeling of Signaling Networks (Edited by Lan Nguyen).2020

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[Book] Quantitative imaging analysis of NF-κB for mathematical modelling applications. Computational Modeling of Signaling Networks (Edited by Lan Nguyen).2020

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[Journal Article] Omics-Based Mathematical Modeling Unveils Pathogenesis of Periodontitis in an Experimental Murine Model2023

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[Journal Article] Systems approaches to investigate the role of NF-κB signaling in aging2022

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[Journal Article] Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers.2022

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OKADA MARIKO 岡田眞里子

OKADA Mariko 岡田眞里子