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Nakamura Kensuke  中村 建介

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NAKAMURA Kensuke  中村 建介

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Researcher Number 20212095
Other IDs
Affiliation (Current) 2025: 前橋工科大学, 工学部, 教授
Affiliation (based on the past Project Information) *help 2014 – 2016: 前橋工科大学, 工学部, 教授
2015: 前橋工科大学, 生命情報学科, 教授
2008 – 2009: Nara Institute of Science and Technology, 情報科学研究科, 特任准教授
2007: Japan Atomic Energy Agency, システム計算科学センター, 研究職
Review Section/Research Field
Principal Investigator
System genome science / Bioinformatics/Life informatics
Keywords
Principal Investigator
ChIP-seq / 微生物ゲノム / プログラム開発 / 酵母 / 相同組み替え / Illumina / 機器特異的エラープロファイル / 変異解析 / 相同組換え / バイオインフォマティクス … More / マッピング / ゲノムアセンブル / エラープロファイル / 解析プログラム開発 / 転写因子 / 相同組換変異解析 / Gef-seq / イルミナ / 次世代シーケンサー / 構造ゲノミクス / 遷移金属 / タンパク質 / データベース / 配列解析 / 遷移金属イオン / 分子進化 / メタロミクス / 金属結合タンパク質 / メタローム / 進化 / 酵素 / 生命情報学 / ゲノム / 金属タンパク質 … More
Except Principal Investigator
次世代DNAシーケンサ / インフォームドコンセント / GWAS / リシーケンシング / 個人ゲノム / de novo配列決定 / ChIP-seq / RNA-seq / 次世代DNAシーケンサー Less
  • Research Projects

    (3 results)
  • Research Products

    (73 results)
  • Co-Researchers

    (73 People)
  •  Development of NGS Data Analysis Softwares Considering the Data Profile of Each PlatformPrincipal Investigator

    • Principal Investigator
      Nakamura Kensuke
    • Project Period (FY)
      2014 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      System genome science
    • Research Institution
      Maebashi Institute of Technology
  •  Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

    • Principal Investigator
      KOHARA Yuji
    • Project Period (FY)
      2010 – 2015
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      National Institute of Genetics
  •  Bioinformatics analysis of transition metal-binding proteinsPrincipal Investigator

    • Principal Investigator
      NAKAMURA Kensuke
    • Project Period (FY)
      2007 – 2009
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Nara Institute of Science and Technology
      Japan Atomic Energy Agency

All 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 Other

All Journal Article Presentation Book Other

  • [Book] 「高精度で結合領域を決定する」次世代シーケンス解析スタンダード・NGSのポテンシャルを活かしきるWET&DRY2014

    • Author(s)
      大島拓・石川周・Onuma Chumsakul・中村建介 / 二階堂愛 編
    • Publisher
      羊土社
    • Data Source
      KAKENHI-PROJECT-26430199
  • [Journal Article] Genome-wide Identification of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by in vivo Footprinting2017

    • Author(s)
      Onuma Chumsakul, Divya P. Anantsuri, Tak Quirke, Taku Oshima, Kensuke Nakamura, Shu Ishikawa and Michiko M. Nakano
    • Journal Title

      Journal of Bacteriology

      Volume: 199

    • Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26430199
  • [Journal Article] Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort2016

    • Author(s)
      Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
    • Journal Title

      Neurobiology of Aging

      Volume: 39 Pages: 219-219

    • DOI

      10.1016/j.neurobiolaging.2015.11.030

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-15K19485, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25461277, KAKENHI-PROJECT-15K15337, KAKENHI-PROJECT-26670439, KAKENHI-PROJECT-26670445, KAKENHI-PROJECT-25860725, KAKENHI-PROJECT-25293207, KAKENHI-ORGANIZER-26117001, KAKENHI-PROJECT-15H05667, KAKENHI-PROJECT-26461319
  • [Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015

    • Author(s)
      Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.
    • Journal Title

      BMC Genomics

      Volume: 16(1) Issue: 1 Pages: 978-978

    • DOI

      10.1186/s12864-015-2198-5

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25290071
  • [Journal Article] Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.2015

    • Author(s)
      Matsuo H, et al.
    • Journal Title

      Ann Rheum Dis.

      Volume: 印刷中 Issue: 4 Pages: 652-659

    • DOI

      10.1136/annrheumdis-2014-206191

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-24390217, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-24590457, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244
  • [Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria2015

    • Author(s)
      Fares-Taie, L. Gerber, S. Tawara, A. Ramirez-Miranda, A. Douet, J. Y. Verdin, H. Guilloux, A. Zenteno, J. C. Kondo, H. Moisset, H. Passet, B. Yamamoto, K. Iwai, M. Tanaka, T. Nakamura, Y. Kimura, W. Bole-Feysot, C. Vilotte, M. Odent, S. Vilotte, J. L. Munnich, A. Regnier, A. Chassaing, N. et al.
    • Journal Title

      Am J Hum Genet

      Volume: 96 Issue: 4 Pages: 631-9

    • DOI

      10.1016/j.ajhg.2015.01.014

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-25462743, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-221S0002
  • [Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015

    • Author(s)
      Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
    • Journal Title

      Plant Cell Physiol.

      Volume: pcv193

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] DNA data bank of Japan (DDBJ) progress report.2015

    • Author(s)
      Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T.
    • Journal Title

      Nucleic Acids Res.

      Volume: gkv1105 Issue: D1 Pages: D51-D57

    • DOI

      10.1093/nar/gkv1105

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] Origin of methane in serpentinite-hosted hydrothermal systems: The CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring2014

    • Author(s)
      Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
    • Journal Title

      Earth and Planetary Science Letters

      Volume: 386 Pages: 112-125

    • DOI

      10.1016/j.epsl.2013.11.001

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21109004, KAKENHI-PLANNED-21109006, KAKENHI-PROJECT-23224013, KAKENHI-PROJECT-23244084, KAKENHI-PROJECT-25400524, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106002
  • [Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates2014

    • Author(s)
      Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
    • Journal Title

      Development

      Volume: 141 Issue: 13 Pages: 2568-80

    • DOI

      10.1242/dev.108548

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-221S0002, KAKENHI-ORGANIZER-22127001
  • [Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014

    • Author(s)
      Sakiyama M, et al.
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 29 Issue: 6 Pages: 490-492

    • DOI

      10.2133/dmpk.DMPK-14-SC-041

    • NAID

      130004463408

    • ISSN
      1347-4367, 1880-0920
    • Language
      English
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
  • [Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor2014

    • Author(s)
      S. Kanda, T. Ohmori, A. Taguchi, K. Kudo, T. Horiuchi, Y. Sato, S. Hino, Y. Suzuki, M. Sander, S. Sugano, M. Nakao, and R. Nishinakamura.
    • Journal Title

      J. Am. Soc. Nephrol.

      Volume: 25 Issue: 11 Pages: 2584-2595

    • DOI

      10.1681/asn.2013080896

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-23116009, KAKENHI-PROJECT-23390228, KAKENHI-PUBLICLY-25111725, KAKENHI-PROJECT-25430178, KAKENHI-PROJECT-25870536, KAKENHI-PROJECT-26860640, KAKENHI-PROJECT-221S0002
  • [Journal Article] Common dysfunctional variants of ABCG2 have stronger impact on hyperuricemia progression than typical environmental risk factors.2014

    • Author(s)
      Nakayama A, et al.
    • Journal Title

      Sci Rep.

      Volume: 4 Issue: 1 Pages: 5227-5227

    • DOI

      10.1038/srep05227

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
  • [Journal Article] The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration2014

    • Author(s)
      Islam, M.R., Nakamura, K., Casco-Robles, M.M., Kunahong, A., Inami, W., Toyama, F., Maruo, F. and Chiba, C.
    • Journal Title

      Sci. Rep.

      Volume: 4, 6043 Issue: 1 Pages: 6043-6043

    • DOI

      10.1038/srep06043

    • NAID

      120007136627

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-14F04097, KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
  • [Journal Article] ABCG2 dysfunction causes hyperuricemia due to both renal urate underexcretion and renal urate overload2014

    • Author(s)
      Matsuo, H. Nakayama, A. Sakiyama, M. et al.
    • Journal Title

      Sci Rep

      Volume: 4:3755 Issue: 1 Pages: 1-5

    • DOI

      10.1038/srep03755

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23300365, KAKENHI-PROJECT-23591205, KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
  • [Journal Article] A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster2014

    • Author(s)
      K. Nakamura, M. R. Islam, M. Takayanagi, H. Yasumuro, W. Inami, A. Kunahong, R. M. Casco-Robles, F. Toyama and C. Chiba
    • Journal Title

      PLoS One

      Volume: 9 Issue: 10 Pages: e109831-e109831

    • DOI

      10.1371/journal.pone.0109831

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
  • [Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.2014

    • Author(s)
      Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
    • Journal Title

      BMC Genomics

      Volume: 15 Issue: 1 Pages: 699-699

    • DOI

      10.1186/1471-2164-15-699

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25670271, KAKENHI-PROJECT-26870328, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128008
  • [Journal Article] DDBJ Read Annotation Pipeline: a cloud computing-based pipeline for high-throughput analysis of new-generation sequencing data.2013

    • Author(s)
      Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Morizaki, S., Sugawara, H., Ohyanagi, H., Kurata, N., Okubo, K., Takagi, T., Kaminuma, E., Nakamura, Y.
    • Journal Title

      DNA Research

      Volume: 20 Issue: 4 Pages: 383-390

    • DOI

      10.1093/dnares/dst017

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25252005, KAKENHI-PROJECT-221S0002
  • [Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012

    • Author(s)
      Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
    • Journal Title

      Bioinformatics

      Volume: 28 Issue: 5 Pages: 745-746

    • DOI

      10.1093/bioinformatics/bts031

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012

    • Author(s)
      Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
    • Journal Title

      BMC Bioinformatics

      Volume: 13 Issue: S17

    • DOI

      10.1186/1471-2105-13-s17-s8

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
  • [Journal Article] Metabolic pathway prediction based on inclusive relation between cyclic substructures2009

    • Author(s)
      K. Tanaka, K. Nakamura, T. Saito, H. Osada, A. Hirai, H. Takahashi, S. Kanaya, Md. Altaf Ul-Amin, (8名2番目)
    • Journal Title

      Plant Biotechnology vol.26

      Pages: 459-468

    • NAID

      10026136375

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] Predicting conformation of protein complexes by determining statistically significant domain-domain interactions2009

    • Author(s)
      K. Nishikata, M. Wada, H. Takahashi, K. Nakamura, S. Kanaya, Md. Altaf-Ul-Amin, (6名4番目
    • Journal Title

      Plant Biotechnology vol.26

      Pages: 495-501

    • NAID

      10026136491

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] MetalMine : a database of functional metal-binding sites in proteins2009

    • Author(s)
      K.Nakamura, A.Hirai, Md.Altaf-Ul-Amin, H.Takahashi
    • Journal Title

      Plant Biotechnology 26

      Pages: 517-521

    • NAID

      10026136588

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] A Synthetic study on gymnastatins F and Q: the tandem Michael and aldol reaction approach2009

    • Author(s)
      K. Murayama, T. Tanabe, Y. Ishikawa, K. Nakamura, S. Nishiyama, (5名4番目)
    • Journal Title

      Tetrahedron Letters vol.50

      Pages: 3191-3194

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] Metabolic pathway prediction based on inclusive relation between cyclic substructures2009

    • Author(s)
      K.Tanaka, K.Nakamura, T.Saito, H.Osada, A.Hirai, H.Takahashi, S.Kanaya, Md.Altaf-Ul-Amin
    • Journal Title

      Plant Biotechnology 26

      Pages: 459-468

    • NAID

      10026136375

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] Predicting conformation of protein complexes by determining statisitically significant domain-domain interactions2009

    • Author(s)
      K.Nishikata, M.Wada, H.Takahashi, K.Nakamura S.Kanaya, Md.Altaf-Ul-Amin
    • Journal Title

      Plant Biotechnology 26

      Pages: 495-501

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] a database of functional metal-binding sites in proteins2009

    • Author(s)
      K. Nakamura, A. Hirai, Md. Altaf-U1-Amin, H. Takahashi (4名1番目)" MetalMine
    • Journal Title

      Plant Biotechnology vol.26

      Pages: 517-521

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] BAAQ: An Infrastructure for Application Integration and Knowledge Discovery in Bioinformatics2007

    • Author(s)
      G. Xiujun, K. Nakamura, H. Yu, K. Yura, N. Go, (5名2番目)
    • Journal Title

      IEEE Transactions on Information Technology in Biomedicine vol.11

      Pages: 428-434

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] Synthesisi of pingusane-type sesquiterpenoids, acutifolone A and pinguisenol along with bisacutifolones through the Diels-Alder dimerization reaction2007

    • Author(s)
      J. Shiina, M. Oikawa, K. Nakamura, R. Obata, S. Nishiyama (5名3番目)
    • Journal Title

      European Journal of Organic Chemistry vol.2007

      Pages: 5190-5197

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Journal Article] BAAQ:An Infrastructure for Application Intergration and Knowledge Discovery in Bioinformatics2007

    • Author(s)
      Gong Xiujun, K. Nakamura, et. al.
    • Journal Title

      IEEE Transaction on Information Technology in Biomedicine 11

      Pages: 428-434

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] プラットフォームの特性を考慮した次世代シーケンサーデータ解析技術基盤の整備2016

    • Author(s)
      竹内敬一郎・中村建介
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-12-01
    • Data Source
      KAKENHI-PROJECT-26430199
  • [Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015

    • Author(s)
      Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
    • Organizer
      57th ASH Annual Meeting
    • Place of Presentation
      Orlando, FL, USA
    • Year and Date
      2015-12-06
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 「Gef-seqに対応したマッピングプログラムおよびGUIの開発」2015

    • Author(s)
      松本秀太・中村建介
    • Organizer
      第9回 日本ゲノム微生物学会年会
    • Place of Presentation
      神戸大学
    • Year and Date
      2015-03-06
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 次世代シーケンサーのベースコール精度の検証2015

    • Author(s)
      松本秀太・中村建介
    • Organizer
      第38回分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2015-12-01
    • Data Source
      KAKENHI-PROJECT-26430199
  • [Presentation] Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated by the Research Communities (ポスター)2014

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      International Plant & Animal Genome XXII
    • Place of Presentation
      サンディエゴ、米国
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2014

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      第55回 日本植物生理学会年会
    • Place of Presentation
      富山大学
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2013

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database (ポスター)2013

    • Author(s)
      Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
    • Organizer
      JSBi2013
    • Place of Presentation
      タワーホール船堀(東京)
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Our Informatics Approaches for Marchantia Genome2013

    • Author(s)
      Nagasaki H, Iida N, Nakamura Y.
    • Organizer
      Marchantia IV
    • Place of Presentation
      メルボルン、オーストラリア
    • Invited
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] NGS由来大量データレポジトリDRAと解析支援パイプラインの提供2012

    • Author(s)
      中村保一
    • Organizer
      理研シンポジウム・データ駆動型生命情報科学の挑戦
    • Place of Presentation
      仙台
    • Year and Date
      2012-05-09
    • Invited
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列のクラウド型パイプライン2011

    • Author(s)
      長崎英樹, 望月孝子, 神沼英里, 渡邊成樹, 児玉悠一, 猿橋智, 菅原秀明, 高木利久, 大久保公策, 中村保一
    • Organizer
      第52回日本植物生理学会年会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2011-03-20
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 新型シーケンサ・アーカイブ配列からのDNA多型注釈データベース構築系統識別ワークフローの開発2011

    • Author(s)
      猿橋智、長崎英樹、望月孝子、神沼英里、中村保一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-12-14
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads2011

    • Author(s)
      Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
    • Organizer
      8th Solanaceae and 2nd Cucurbitaceae Joint Conference
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2011-11-28
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Sequence specific error profile of Illumina sequencers2011

    • Author(s)
      Kensuke Nakamura
    • Organizer
      Functional Genomics and Systems Biology 2011 Wellcome Trust Scientific Conferences
    • Place of Presentation
      Hinxton, Cambridge, UK
    • Year and Date
      2011-11-30
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 日本DNAデータバンク(DDBJ)での新規電算機システムによる超並列型シーケンサ由来の大規模塩基配列情報解析支援の試み2011

    • Author(s)
      望月孝子, 児玉悠一, 猿橋智, 長崎英樹, 神沼英里, 菅原秀明, 大久保公策, 高木利久, 中村保一
    • Organizer
      「生命情報科学若手の会」第2回研究会
    • Place of Presentation
      国立遺伝学研究所(静岡県三島市)
    • Year and Date
      2011-10-09
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] イルミナシーケンサーの配列特異的エラーについて2011

    • Author(s)
      中村建介
    • Organizer
      日本進化学会第13回大会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-31
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Sequence specific error profile of Illumina sequencers2011

    • Author(s)
      Kensuke Nakamura
    • Organizer
      SMBE2011 (Society of Molecular Biology and Evolution)
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-27
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 次世代シーケンサーのアーカイブDBとクラウド型データ解析システムの紹介2011

    • Author(s)
      神沼英里、児玉悠一、猿橋智、望月孝子、長崎英樹、高木利久、大久保公策、中村保一
    • Organizer
      第154回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-08-19
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 新型シーケンサ・アーカイブ配列のクラウド型解析パイプラインDDBJ Pipeline進捗:de novoアセンブル配列注釈ワークフロー2011

    • Author(s)
      長崎英樹、望月孝子、児玉悠一、猿橋智、高木利久、大久保公策、神沼英里、中村保一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2011-12-14
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Read Annotation Pipeline : A cloud based pipeline for high-throughput analysis of next generation sequencing data2011

    • Author(s)
      Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
    • Organizer
      Plant and Animal Genome XIX Conference
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2011-01-15
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data2011

    • Author(s)
      Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Takagi, T., Okubo, K., Kaminuma, E., Nakamura, Y.
    • Organizer
      The 2nd International Conference on the Progress of "1000 Plant & Animal Reference Genomes Project"
    • Place of Presentation
      Shenzhen, China
    • Year and Date
      2011-07-11
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウト型解析パイプライン2011

    • Author(s)
      猿橋智, 児玉悠一, 李慶範, 大城戸利久, 横山会美, 長崎英樹, 望月孝子, 神沼英里, 菅原秀明, 高木利久, 大久保公策, 中村保一
    • Organizer
      NGS現場の会第1回研究会
    • Place of Presentation
      熱海ニューフジヤホテル(静岡県熱海市)
    • Year and Date
      2011-05-28
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Sequence Read Annotation Pipeline-A cloud computing-based analytical tool for next-generation sequencing data2010

    • Author(s)
      Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
    • Organizer
      The tenth Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics
    • Place of Presentation
      Hinxton, UK
    • Year and Date
      2010-09-15
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Metalome in coordination with Metabolome2010

    • Author(s)
      K.Nakamura, A.Hirai, H.Takahashi S.Kanaya
    • Organizer
      8th Metabolome Informatics Workshop
    • Place of Presentation
      慶応義塾鶴岡キャンパス(山形県)
    • Year and Date
      2010-01-29
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列データ解析パイプライン2010

    • Author(s)
      長崎英樹、望月孝子、神沼英里、渡邊成樹、児玉悠一、猿橋智、菅原秀明、高木利久、大久保公策、中村保一
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2010-12-07
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Read Annotation Pipeline : A web-based analytical tool for next-generation sequencing data2010

    • Author(s)
      Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
    • Organizer
      18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2010)
    • Place of Presentation
      Boston, USA
    • Year and Date
      2010-07-11
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Metallome in coordination with Metabolome2010

    • Author(s)
      K. Nakamura, A. Hirai, H. Takahashi, S. Kanaya
    • Organizer
      8thMetabolome Informatics Workshop
    • Place of Presentation
      慶応鶴岡キャンパス
    • Year and Date
      2010-01-29
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010

    • Author(s)
      神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
    • Organizer
      第148回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
    • Place of Presentation
      農林水産先端技術研究所(茨城県つくば市)
    • Year and Date
      2010-09-10
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] DDBJ Read Annotation Pipeline : A cloud computing based analytical tool for next-generation sequencing data2010

    • Author(s)
      Yasukazu Nakamura, Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideki Nagasaki, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo
    • Organizer
      Rice Annotation Project RAP7 meeting
    • Place of Presentation
      東京国際交流館(東京都江東区)
    • Year and Date
      2010-10-14
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010

    • Author(s)
      神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
    • Organizer
      NIASシンポジウム「イネ遺伝学・分子生物学ワークショップ2010」
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2010-07-02
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] MetalMine: a databse of functional metal-ion-binding sites in proteins2009

    • Author(s)
      K. Nakamura, A. Hirai, H. Takahashi, Md. Altaf Ul-Amin, S. Kanaya
    • Organizer
      GIW2009 The 20th International Conference on Genome Informatics
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-15
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] MetalMine : a database of functional metal-ion-binding sites in proteins2009

    • Author(s)
      K.Nakamura, A.Hirai, H.Takahashi, Md.Altaf-Ul-Amin, S.Kanaya
    • Organizer
      The 20th International Conference on Genome Informatics
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-15
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] 遷移金属結合サイトデータベースの構築2008

    • Author(s)
      中村建介
    • Organizer
      第八回日本タンパク質化学会年会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2008-06-10
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] Prediction of metal-binding sites for high-throughput metalloproteomics data2007

    • Author(s)
      K. Nakamura, K. Yura, N. Go
    • Organizer
      VII European Symposium of the Protein Society
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2007-05-15
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] Prediction of Metal-Binding Sites for High-Throughput Metalloproteomics Data2007

    • Author(s)
      Kensuke Nakamura
    • Organizer
      VII European Symposium of The Protein Society
    • Place of Presentation
      ストックホルム/スヴェーデン
    • Year and Date
      2007-05-16
    • Data Source
      KAKENHI-PROJECT-19500255
  • [Presentation] The Construction of Genome Annotation Database for the Liverwort Marchantia polymorpha

    • Author(s)
      Hideki Nagasaki, Naoko Iida, Yasukazu Nakamura
    • Organizer
      Marchantia Workshop 2014
    • Place of Presentation
      神戸大学
    • Year and Date
      2014-12-08 – 2014-12-10
    • Invited
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha

    • Author(s)
      長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
    • Organizer
      第56回日本植物生理学会年会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2015-03-16 – 2015-03-18
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha

    • Author(s)
      Yasukazu Nakamura, Hideki Nagasaki, Naoko Iida
    • Organizer
      Expanding Frontiers of Genome Science II
    • Place of Presentation
      一橋講堂
    • Year and Date
      2015-01-20 – 2015-01-21
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha

    • Author(s)
      Hideki Nagasaki Kimitsune Ishizaki Katsuyuki T. Yamato Takayuki Kohchi Yasukazu Nakamura
    • Organizer
      International Plant & Animal Genome XXIII
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2015-01-10 – 2015-01-14
    • Data Source
      KAKENHI-PROJECT-221S0002
  • [Presentation] Gef-seqに対応したマッピングプログラムおよびGUIの開発

    • Author(s)
      中村建介・松本秀太
    • Organizer
      第9回日本ゲノム微生物学会年会
    • Place of Presentation
      神戸大学
    • Year and Date
      2015-03-06 – 2015-03-08
    • Data Source
      KAKENHI-PROJECT-26430199
  • [Presentation] The Construction of Genome Annotation Database for Liverwort ゼニゴケゲノムアノテーションデータベースの構築

    • Author(s)
      長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
    • Organizer
      第37回 日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Data Source
      KAKENHI-PROJECT-221S0002
  • []

  • []

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    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 60.  SATOH Noriyuki
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 61.  MATSUDA Hideo
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 62.  GOTO Susumu
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 63.  TSUDA Masataka
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 64.  OMORI Soichi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 65.  KUBO Takahiko
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 66.  SATO Kengo
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 67.  MATSUO Hirotaka
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 68.  KONDO Hiroyuki
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 69.  NAKAMURA Shota
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 70.  中村 亮一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 71.  中尾 光善
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 72.  倉田 のり
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 73.  千葉 親文
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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