Nakamura Kensuke 中村建介

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NAKAMURA Kensuke 中村建介

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Researcher Number	20212095
Other IDs
Affiliation (Current)	2025: 前橋工科大学, 工学部, 教授
Affiliation (based on the past Project Information) *help	2014 – 2016: 前橋工科大学, 工学部, 教授 2015: 前橋工科大学, 生命情報学科, 教授 2008 – 2009: Nara Institute of Science and Technology, 情報科学研究科, 特任准教授 2007: Japan Atomic Energy Agency, システム計算科学センター, 研究職
Review Section/Research Field	Principal Investigator System genome science / Bioinformatics/Life informatics
Keywords	Principal Investigator ChIP-seq / 微生物ゲノム / プログラム開発 / 酵母 / 相同組み替え / Illumina / 機器特異的エラープロファイル / 変異解析 / 相同組換え / バイオインフォマティクス … More / マッピング / ゲノムアセンブル / エラープロファイル / 解析プログラム開発 / 転写因子 / 相同組換変異解析 / Gef-seq / イルミナ / 次世代シーケンサー / 構造ゲノミクス / 遷移金属 / タンパク質 / データベース / 配列解析 / 遷移金属イオン / 分子進化 / メタロミクス / 金属結合タンパク質 / メタローム / 進化 / 酵素 / 生命情報学 / ゲノム / 金属タンパク質 … More Except Principal Investigator 次世代DNAシーケンサ / インフォームドコンセント / GWAS / リシーケンシング / 個人ゲノム / de novo配列決定 / ChIP-seq / RNA-seq / 次世代DNAシーケンサー Less

Development of NGS Data Analysis Softwares Considering the Data Profile of Each PlatformPrincipal Investigator
- Principal Investigator
  
  Nakamura Kensuke
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  System genome science
- Research Institution
  Maebashi Institute of Technology
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Bioinformatics analysis of transition metal-binding proteinsPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Kensuke
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  Nara Institute of Science and Technology
  Japan Atomic Energy Agency

All 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 Other

All Journal Article Presentation Book Other

[Book] 「高精度で結合領域を決定する」次世代シーケンス解析スタンダード・NGSのポテンシャルを活かしきるWET&DRY2014
- Author(s)
  大島拓・石川周・Onuma Chumsakul・中村建介／二階堂愛編
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-26430199
[Journal Article] Genome-wide Identification of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by in vivo Footprinting2017
- Author(s)
  Onuma Chumsakul, Divya P. Anantsuri, Tak Quirke, Taku Oshima, Kensuke Nakamura, Shu Ishikawa and Michiko M. Nakano
- Journal Title
  
  Journal of Bacteriology
  
  Volume: 199
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26430199
[Journal Article] Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort2016
- Author(s)
  Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
- Journal Title
  
  Neurobiology of Aging
  
  Volume: 39 Pages: 219-219
- DOI
  10.1016/j.neurobiolaging.2015.11.030
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K19485, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25461277, KAKENHI-PROJECT-15K15337, KAKENHI-PROJECT-26670439, KAKENHI-PROJECT-26670445, KAKENHI-PROJECT-25860725, KAKENHI-PROJECT-25293207, KAKENHI-ORGANIZER-26117001, KAKENHI-PROJECT-15H05667, KAKENHI-PROJECT-26461319
[Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015
- Author(s)
  Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.
- Journal Title
  
  BMC Genomics
  
  Volume: 16(1) Issue: 1 Pages: 978-978
- DOI
  10.1186/s12864-015-2198-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25290071
[Journal Article] Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.2015
- Author(s)
  Matsuo H, et al.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 印刷中 Issue: 4 Pages: 652-659
- DOI
  10.1136/annrheumdis-2014-206191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-24390217, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-24590457, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244
[Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria2015
- Author(s)
  Fares-Taie, L. Gerber, S. Tawara, A. Ramirez-Miranda, A. Douet, J. Y. Verdin, H. Guilloux, A. Zenteno, J. C. Kondo, H. Moisset, H. Passet, B. Yamamoto, K. Iwai, M. Tanaka, T. Nakamura, Y. Kimura, W. Bole-Feysot, C. Vilotte, M. Odent, S. Vilotte, J. L. Munnich, A. Regnier, A. Chassaing, N. et al.
- Journal Title
  
  Am J Hum Genet
  
  Volume: 96 Issue: 4 Pages: 631-9
- DOI
  10.1016/j.ajhg.2015.01.014
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25462743, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-221S0002
[Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015
- Author(s)
  Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: pcv193
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] DNA data bank of Japan (DDBJ) progress report.2015
- Author(s)
  Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: gkv1105 Issue: D1 Pages: D51-D57
- DOI
  10.1093/nar/gkv1105
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Origin of methane in serpentinite-hosted hydrothermal systems: The CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring2014
- Author(s)
  Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
- Journal Title
  
  Earth and Planetary Science Letters
  
  Volume: 386 Pages: 112-125
- DOI
  10.1016/j.epsl.2013.11.001
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21109004, KAKENHI-PLANNED-21109006, KAKENHI-PROJECT-23224013, KAKENHI-PROJECT-23244084, KAKENHI-PROJECT-25400524, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106002
[Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates2014
- Author(s)
  Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
- Journal Title
  
  Development
  
  Volume: 141 Issue: 13 Pages: 2568-80
- DOI
  10.1242/dev.108548
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-221S0002, KAKENHI-ORGANIZER-22127001
[Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014
- Author(s)
  Sakiyama M, et al.
- Journal Title
  
  Drug Metabolism and Pharmacokinetics
  
  Volume: 29 Issue: 6 Pages: 490-492
- DOI
  10.2133/dmpk.DMPK-14-SC-041
- NAID
  130004463408
- ISSN
  1347-4367, 1880-0920
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor2014
- Author(s)
  S. Kanda, T. Ohmori, A. Taguchi, K. Kudo, T. Horiuchi, Y. Sato, S. Hino, Y. Suzuki, M. Sander, S. Sugano, M. Nakao, and R. Nishinakamura.
- Journal Title
  
  J. Am. Soc. Nephrol.
  
  Volume: 25 Issue: 11 Pages: 2584-2595
- DOI
  10.1681/asn.2013080896
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-23116009, KAKENHI-PROJECT-23390228, KAKENHI-PUBLICLY-25111725, KAKENHI-PROJECT-25430178, KAKENHI-PROJECT-25870536, KAKENHI-PROJECT-26860640, KAKENHI-PROJECT-221S0002
[Journal Article] Common dysfunctional variants of ABCG2 have stronger impact on hyperuricemia progression than typical environmental risk factors.2014
- Author(s)
  Nakayama A, et al.
- Journal Title
  
  Sci Rep.
  
  Volume: 4 Issue: 1 Pages: 5227-5227
- DOI
  10.1038/srep05227
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration2014
- Author(s)
  Islam, M.R., Nakamura, K., Casco-Robles, M.M., Kunahong, A., Inami, W., Toyama, F., Maruo, F. and Chiba, C.
- Journal Title
  
  Sci. Rep.
  
  Volume: 4, 6043 Issue: 1 Pages: 6043-6043
- DOI
  10.1038/srep06043
- NAID
  120007136627
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14F04097, KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] ABCG2 dysfunction causes hyperuricemia due to both renal urate underexcretion and renal urate overload2014
- Author(s)
  Matsuo, H.　Nakayama, A.　Sakiyama, M.　et al.
- Journal Title
  
  Sci Rep
  
  Volume: 4：3755 Issue: 1 Pages: 1-5
- DOI
  10.1038/srep03755
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23300365, KAKENHI-PROJECT-23591205, KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster2014
- Author(s)
  K. Nakamura, M. R. Islam, M. Takayanagi, H. Yasumuro, W. Inami, A. Kunahong, R. M. Casco-Robles, F. Toyama and C. Chiba
- Journal Title
  
  PLoS One
  
  Volume: 9 Issue: 10 Pages: e109831-e109831
- DOI
  10.1371/journal.pone.0109831
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.2014
- Author(s)
  Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
- Journal Title
  
  BMC Genomics
  
  Volume: 15 Issue: 1 Pages: 699-699
- DOI
  10.1186/1471-2164-15-699
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25670271, KAKENHI-PROJECT-26870328, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128008
[Journal Article] DDBJ Read Annotation Pipeline: a cloud computing-based pipeline for high-throughput analysis of new-generation sequencing data.2013
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Morizaki, S., Sugawara, H., Ohyanagi, H., Kurata, N., Okubo, K., Takagi, T., Kaminuma, E., Nakamura, Y.
- Journal Title
  
  DNA Research
  
  Volume: 20 Issue: 4 Pages: 383-390
- DOI
  10.1093/dnares/dst017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25252005, KAKENHI-PROJECT-221S0002
[Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012
- Author(s)
  Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 5 Pages: 745-746
- DOI
  10.1093/bioinformatics/bts031
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012
- Author(s)
  Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 13 Issue: S17
- DOI
  10.1186/1471-2105-13-s17-s8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
[Journal Article] Metabolic pathway prediction based on inclusive relation between cyclic substructures2009
- Author(s)
  K. Tanaka, K. Nakamura, T. Saito, H. Osada, A. Hirai, H. Takahashi, S. Kanaya, Md. Altaf Ul-Amin, (8名2番目)
- Journal Title
  
  Plant Biotechnology vol.26
  
  Pages: 459-468
- NAID
  10026136375
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] Predicting conformation of protein complexes by determining statistically significant domain-domain interactions2009
- Author(s)
  K. Nishikata, M. Wada, H. Takahashi, K. Nakamura, S. Kanaya, Md. Altaf-Ul-Amin, (6名4番目
- Journal Title
  
  Plant Biotechnology vol.26
  
  Pages: 495-501
- NAID
  10026136491
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] MetalMine : a database of functional metal-binding sites in proteins2009
- Author(s)
  K.Nakamura, A.Hirai, Md.Altaf-Ul-Amin, H.Takahashi
- Journal Title
  
  Plant Biotechnology 26
  
  Pages: 517-521
- NAID
  10026136588
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] A Synthetic study on gymnastatins F and Q: the tandem Michael and aldol reaction approach2009
- Author(s)
  K. Murayama, T. Tanabe, Y. Ishikawa, K. Nakamura, S. Nishiyama, (5名4番目)
- Journal Title
  
  Tetrahedron Letters vol.50
  
  Pages: 3191-3194
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] Metabolic pathway prediction based on inclusive relation between cyclic substructures2009
- Author(s)
  K.Tanaka, K.Nakamura, T.Saito, H.Osada, A.Hirai, H.Takahashi, S.Kanaya, Md.Altaf-Ul-Amin
- Journal Title
  
  Plant Biotechnology 26
  
  Pages: 459-468
- NAID
  10026136375
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] Predicting conformation of protein complexes by determining statisitically significant domain-domain interactions2009
- Author(s)
  K.Nishikata, M.Wada, H.Takahashi, K.Nakamura S.Kanaya, Md.Altaf-Ul-Amin
- Journal Title
  
  Plant Biotechnology 26
  
  Pages: 495-501
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] a database of functional metal-binding sites in proteins2009
- Author(s)
  K. Nakamura, A. Hirai, Md. Altaf-U1-Amin, H. Takahashi (4名1番目)" MetalMine
- Journal Title
  
  Plant Biotechnology vol.26
  
  Pages: 517-521
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] BAAQ: An Infrastructure for Application Integration and Knowledge Discovery in Bioinformatics2007
- Author(s)
  G. Xiujun, K. Nakamura, H. Yu, K. Yura, N. Go, (5名2番目)
- Journal Title
  
  IEEE Transactions on Information Technology in Biomedicine vol.11
  
  Pages: 428-434
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] Synthesisi of pingusane-type sesquiterpenoids, acutifolone A and pinguisenol along with bisacutifolones through the Diels-Alder dimerization reaction2007
- Author(s)
  J. Shiina, M. Oikawa, K. Nakamura, R. Obata, S. Nishiyama (5名3番目)
- Journal Title
  
  European Journal of Organic Chemistry vol.2007
  
  Pages: 5190-5197
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Journal Article] BAAQ:An Infrastructure for Application Intergration and Knowledge Discovery in Bioinformatics2007
- Author(s)
  Gong Xiujun, K. Nakamura, et. al.
- Journal Title
  
  IEEE Transaction on Information Technology in Biomedicine 11
  
  Pages: 428-434
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] プラットフォームの特性を考慮した次世代シーケンサーデータ解析技術基盤の整備2016
- Author(s)
  竹内敬一郎・中村建介
- Organizer
  第３９回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2016-12-01
- Data Source
  KAKENHI-PROJECT-26430199
[Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015
- Author(s)
  Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
- Organizer
  57th ASH Annual Meeting
- Place of Presentation
  Orlando, FL, USA
- Year and Date
  2015-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 「Gef-seqに対応したマッピングプログラムおよびGUIの開発」2015
- Author(s)
  松本秀太・中村建介
- Organizer
  第９回　日本ゲノム微生物学会年会
- Place of Presentation
  神戸大学
- Year and Date
  2015-03-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサーのベースコール精度の検証2015
- Author(s)
  松本秀太・中村建介
- Organizer
  第38回分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Year and Date
  2015-12-01
- Data Source
  KAKENHI-PROJECT-26430199
[Presentation] Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated by the Research Communities (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  International Plant & Animal Genome XXII
- Place of Presentation
  サンディエゴ、米国
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第55回日本植物生理学会年会
- Place of Presentation
  富山大学
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  JSBi2013
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Our Informatics Approaches for Marchantia Genome2013
- Author(s)
  Nagasaki H, Iida N, Nakamura Y.
- Organizer
  Marchantia IV
- Place of Presentation
  メルボルン、オーストラリア
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] NGS由来大量データレポジトリDRAと解析支援パイプラインの提供2012
- Author(s)
  中村保一
- Organizer
  理研シンポジウム・データ駆動型生命情報科学の挑戦
- Place of Presentation
  仙台
- Year and Date
  2012-05-09
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列のクラウド型パイプライン2011
- Author(s)
  長崎英樹, 望月孝子, 神沼英里, 渡邊成樹, 児玉悠一, 猿橋智, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  第52回日本植物生理学会年会
- Place of Presentation
  東北大学(宮城県仙台市)
- Year and Date
  2011-03-20
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列からのDNA多型注釈データベース構築系統識別ワークフローの開発2011
- Author(s)
  猿橋智、長崎英樹、望月孝子、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads2011
- Author(s)
  Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  8th Solanaceae and 2nd Cucurbitaceae Joint Conference
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2011-11-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  Functional Genomics and Systems Biology 2011 Wellcome Trust Scientific Conferences
- Place of Presentation
  Hinxton, Cambridge, UK
- Year and Date
  2011-11-30
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 日本DNAデータバンク(DDBJ)での新規電算機システムによる超並列型シーケンサ由来の大規模塩基配列情報解析支援の試み2011
- Author(s)
  望月孝子, 児玉悠一, 猿橋智, 長崎英樹, 神沼英里, 菅原秀明, 大久保公策, 高木利久, 中村保一
- Organizer
  「生命情報科学若手の会」第2回研究会
- Place of Presentation
  国立遺伝学研究所(静岡県三島市)
- Year and Date
  2011-10-09
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] イルミナシーケンサーの配列特異的エラーについて2011
- Author(s)
  中村建介
- Organizer
  日本進化学会第13回大会
- Place of Presentation
  京都大学
- Year and Date
  2011-07-31
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  SMBE2011 (Society of Molecular Biology and Evolution)
- Place of Presentation
  京都大学
- Year and Date
  2011-07-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサーのアーカイブDBとクラウド型データ解析システムの紹介2011
- Author(s)
  神沼英里、児玉悠一、猿橋智、望月孝子、長崎英樹、高木利久、大久保公策、中村保一
- Organizer
  第154回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-08-19
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列のクラウド型解析パイプラインDDBJ Pipeline進捗:de novoアセンブル配列注釈ワークフロー2011
- Author(s)
  長崎英樹、望月孝子、児玉悠一、猿橋智、高木利久、大久保公策、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud based pipeline for high-throughput analysis of next generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
- Organizer
  Plant and Animal Genome XIX Conference
- Place of Presentation
  San Diego, USA
- Year and Date
  2011-01-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Takagi, T., Okubo, K., Kaminuma, E., Nakamura, Y.
- Organizer
  The 2nd International Conference on the Progress of "1000 Plant & Animal Reference Genomes Project"
- Place of Presentation
  Shenzhen, China
- Year and Date
  2011-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウト型解析パイプライン2011
- Author(s)
  猿橋智, 児玉悠一, 李慶範, 大城戸利久, 横山会美, 長崎英樹, 望月孝子, 神沼英里, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  NGS現場の会第1回研究会
- Place of Presentation
  熱海ニューフジヤホテル(静岡県熱海市)
- Year and Date
  2011-05-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Annotation Pipeline-A cloud computing-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  The tenth Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics
- Place of Presentation
  Hinxton, UK
- Year and Date
  2010-09-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Metalome in coordination with Metabolome2010
- Author(s)
  K.Nakamura, A.Hirai, H.Takahashi S.Kanaya
- Organizer
  8th Metabolome Informatics Workshop
- Place of Presentation
  慶応義塾鶴岡キャンパス(山形県)
- Year and Date
  2010-01-29
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列データ解析パイプライン2010
- Author(s)
  長崎英樹、望月孝子、神沼英里、渡邊成樹、児玉悠一、猿橋智、菅原秀明、高木利久、大久保公策、中村保一
- Organizer
  第33回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2010-12-07
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A web-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2010)
- Place of Presentation
  Boston, USA
- Year and Date
  2010-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Metallome in coordination with Metabolome2010
- Author(s)
  K. Nakamura, A. Hirai, H. Takahashi, S. Kanaya
- Organizer
  8thMetabolome Informatics Workshop
- Place of Presentation
  慶応鶴岡キャンパス
- Year and Date
  2010-01-29
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  第148回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  農林水産先端技術研究所(茨城県つくば市)
- Year and Date
  2010-09-10
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud computing based analytical tool for next-generation sequencing data2010
- Author(s)
  Yasukazu Nakamura, Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideki Nagasaki, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo
- Organizer
  Rice Annotation Project RAP7 meeting
- Place of Presentation
  東京国際交流館(東京都江東区)
- Year and Date
  2010-10-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  NIASシンポジウム「イネ遺伝学・分子生物学ワークショップ2010」
- Place of Presentation
  つくば国際会議場(茨城県つくば市)
- Year and Date
  2010-07-02
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] MetalMine: a databse of functional metal-ion-binding sites in proteins2009
- Author(s)
  K. Nakamura, A. Hirai, H. Takahashi, Md. Altaf Ul-Amin, S. Kanaya
- Organizer
  GIW2009 The 20th International Conference on Genome Informatics
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] MetalMine : a database of functional metal-ion-binding sites in proteins2009
- Author(s)
  K.Nakamura, A.Hirai, H.Takahashi, Md.Altaf-Ul-Amin, S.Kanaya
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  パシフィコ横浜(神奈川県)
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] 遷移金属結合サイトデータベースの構築2008
- Author(s)
  中村建介
- Organizer
  第八回日本タンパク質化学会年会
- Place of Presentation
  タワーホール船堀(東京)
- Year and Date
  2008-06-10
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] Prediction of metal-binding sites for high-throughput metalloproteomics data2007
- Author(s)
  K. Nakamura, K. Yura, N. Go
- Organizer
  VII European Symposium of the Protein Society
- Place of Presentation
  Stockholm, Sweden
- Year and Date
  2007-05-15
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] Prediction of Metal-Binding Sites for High-Throughput Metalloproteomics Data2007
- Author(s)
  Kensuke Nakamura
- Organizer
  VII European Symposium of The Protein Society
- Place of Presentation
  ストックホルム/スヴェーデン
- Year and Date
  2007-05-16
- Data Source
  KAKENHI-PROJECT-19500255
[Presentation] The Construction of Genome Annotation Database for the Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki, Naoko Iida, Yasukazu Nakamura
- Organizer
  Marchantia Workshop 2014
- Place of Presentation
  神戸大学
- Year and Date
  2014-12-08 – 2014-12-10
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第56回日本植物生理学会年会
- Place of Presentation
  東京農業大学
- Year and Date
  2015-03-16 – 2015-03-18
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Yasukazu Nakamura, Hideki Nagasaki, Naoko Iida
- Organizer
  Expanding Frontiers of Genome Science II
- Place of Presentation
  一橋講堂
- Year and Date
  2015-01-20 – 2015-01-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki Kimitsune Ishizaki Katsuyuki T. Yamato Takayuki Kohchi Yasukazu Nakamura
- Organizer
  International Plant & Animal Genome XXIII
- Place of Presentation
  San Diego, CA, USA
- Year and Date
  2015-01-10 – 2015-01-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Gef-seqに対応したマッピングプログラムおよびGUIの開発
- Author(s)
  中村建介・松本秀太
- Organizer
  第９回日本ゲノム微生物学会年会
- Place of Presentation
  神戸大学
- Year and Date
  2015-03-06 – 2015-03-08
- Data Source
  KAKENHI-PROJECT-26430199
[Presentation] The Construction of Genome Annotation Database for Liverwort ゼニゴケゲノムアノテーションデータベースの構築
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第37回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2014-11-25 – 2014-11-27
- Data Source
  KAKENHI-PROJECT-221S0002
[]
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Nakamura Kensuke 中村 建介

NAKAMURA Kensuke 中村 建介

Research Projects

Research Products

Co-Researchers

Development of NGS Data Analysis Softwares Considering the Data Profile of Each PlatformPrincipal Investigator

Principal Investigator

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Research Institution

Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

Principal Investigator

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Research Institution

Bioinformatics analysis of transition metal-binding proteinsPrincipal Investigator

Principal Investigator

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Research Institution

[Book] 「高精度で結合領域を決定する」次世代シーケンス解析スタンダード・NGSのポテンシャルを活かしきるWET&DRY2014

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Publisher

Data Source

[Journal Article] Genome-wide Identification of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by in vivo Footprinting2017

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[Journal Article] Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort2016

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DOI

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[Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015

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[Journal Article] Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.2015

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DOI

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[Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria2015

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[Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015

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[Journal Article] DNA data bank of Japan (DDBJ) progress report.2015

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[Journal Article] Origin of methane in serpentinite-hosted hydrothermal systems: The CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring2014

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[Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates2014

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[Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014

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[Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor2014

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Journal Title

Nakamura Kensuke 中村建介

NAKAMURA Kensuke 中村建介