Kurokawa Ken 黒川顕

… Alternative Names

Researcher Number	20343246
Other IDs
Affiliation (Current)	2020: 国立遺伝学研究所, 情報研究系, 教授
Affiliation (based on the past Project Information) *help	2018 – 2019: 国立遺伝学研究所, 情報研究系, 教授 2016 – 2018: 国立遺伝学研究所, 生命情報研究センター, 教授 2013 – 2015: 東京工業大学, 地球生命研究所, 教授 2014: 東京工業大学, 学内共同利用施設等, 教授 2014: 東京工業大学, 地球生命研究所, 准教授 … More
Review Section/Research Field	Principal Investigator Science and Engineering / Biological Sciences / Bacteriology (including Mycology) / 基礎ゲノム科学 / Genome biology Except Principal Investigator 基礎ゲノム科学 / Morphological basic dentistry / Biological Sciences / Boundary agriculture / Environmental agriculture(including landscape science) / Science and Engineering / Plant nutrition/Soil science / Bacteriology (including mycology)
Keywords	Principal Investigator ゲノム / 化学進化 / 生命起源 / 惑星起源・進化 / 比較ゲノム / 自己組織化地図法 / 地球起源 / 原始地球 / コドン使用頻度 / ゲノム構造 … More Except Principal Investigator メタゲノム / 細菌 / ゲノム / 進化 / 次世代DNAシーケンサー / リシーケンシング / 環境汚染 / 分解酵素遺伝子 / 腸内細菌叢 / メタゲノム解析 / モデル化 / 遺伝子 / 発現解析 / 発現制御 / ゲノム進化・再編 / ChIP-chip / 転写制御ネットワーク / ChAP-chip / Fur / H-NS / Zur / 転写ネットワーク / 大腸菌 / 病原性大腸菌 / 転写制御システム / ChIP-chip解析 / ChIP-seq解析 / 微生物 / 感染症 / RNA-seq / ChIP-seq / de novo配列決定 / 個人ゲノム / GWAS / インフォームドコンセント / 次世代DNAシーケンサ / 細菌叢 / 新型シーケンサー / 恒常性 / 口腔細菌叢 / 細菌ゲノム / 高速シーケンサー / 環境汚染物質分解 / 細菌集団 / バクテリオファージ / CRISPR / 微生物生態学 / 細菌叢解析 / 外来因子 / 冥王代 / 生命の起源 / 生命の誕生場 / 蛇紋岩熱水系 / 未知未培養微生物 / 嫌気性微生物 / 原始エネルギー代謝 / OD1 / エネルギー代謝 / Wood-Ljungdahl 経路 / 人工生命系 / ATPase / 特殊環境微生物 / 生命進化 / 原始生命体 / 古細菌 / アルカリ環境 / 共生 / 微生物初期進化 / ミニマムゲノム / ゲノム解析 / 化学進化 / 難培養性微生物 / 初期エネルギー代謝 / 人工生命体 / 原始地球 / ゲノムインフォマティックス / 難培養微生物 / 独立栄養微生物 / 遺伝学 / 難培養性細菌 / 難培養性 / Genetics / Gut microbiota / Genome / Metagenome / Unculturable bacteria / 新規ゲノム配列決定 / エピゲノム / RNA-Seq / 1細胞解析 / スーパーコンピューター / ゲノムアッセンブル / ゲノム多型 / ゲノムアノテーション / 水田土壌 / メタトランスクリプトーム解析 / メタン生成・消去 / 窒素固定 / DNRA / 脱窒 / 脱窒反応 / DNRA反応 / 窒素固定反応 / デルタプロテオバクテリア / 鉄還元菌 / 土壌微生物 / 土壌学 / 粘膜免疫 / 抗体 / 腸内細菌 / IgA抗体 / 腸管免疫 Less

専門書「冥王代生命学」の出版Principal InvestigatorOngoing
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Genetics
先進ゲノム解析研究推進プラットフォームOngoing
- Principal Investigator(Support)
  
  小原雄治
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
冥王代生命学の国際研究ネットワーク展開Principal InvestigatorOngoing
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Genetics
  Tokyo Institute of Technology
Mechanism of intestinal midrobiota regulation by intestinal IgA
- Principal Investigator
  
  Shinkura Reiko
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  The University of Tokyo
  Nara Institute of Science and Technology
  Nagahama Institute of Bio-Science and Technology
Hadean Eon Microbiome
- Principal Investigator
  
  KAMAGATA YOICHI
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Advanced Industrial Science and Technology
Hadean BioscienceArea Organizer
- Area Organizer
  
  黒川顕
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Hadean BiosciencePrincipal InvestigatorOngoing
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2014 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  National Institute of Genetics
  Tokyo Institute of Technology
Behavior of microbial community in the environment polluted by aromatic compound
- Principal Investigator
  
  Tsuda Masataka
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Environmental agriculture(including landscape science)
- Research Institution
  Tohoku University
Regulation and reconstruction of acquired memories in human microbiota
- Principal Investigator
  
  MARUYAMA Fumito
- Project Period (FY)
  2013 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Morphological basic dentistry
- Research Institution
  Kyoto University
  Tokyo Medical and Dental University
Metagenomic and metatranscriptomic analysis of rice paddy soil
- Principal Investigator
  
  Senoo Keishi
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Plant nutrition/Soil science
- Research Institution
  The University of Tokyo
Comparative analysis of H-NS binding profiles of three E.coli strains suggests H-NS binding contributes to sequence diversification of E.coli genomePrincipal Investigator
- Principal Investigator
  
  KUROKAWA Ken
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Genome biology
- Research Institution
  Tokyo Institute of Technology
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Response of soil microbial community to exposure of environmental pollutants
- Principal Investigator
  
  TSUDA Masataka
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Boundary agriculture
- Research Institution
  Tohoku University
Maintenance mechanism of oral homeostasis revealed by fine scale analysis of microbiota
- Principal Investigator
  
  MARUYAMA Fumito
- Project Period (FY)
  2010 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Morphological basic dentistry
- Research Institution
  Tokyo Medical and Dental University
ChIP-chip analysis of diversity of binding sites of transcriptional factors in thres E.coli strains
- Principal Investigator
  
  OGASAWARA Naotake
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Nara Institute of Science and Technology
Escherichia coli pan-genome analysis using next-generation DNA sequencing technologies
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  University of Miyazaki
Genome analysis of bacteria inhabiting the mucosal surface of intestine
- Principal Investigator
  
  HAYASHI Tetsuya
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  University of Miyazaki
Computational Biology for complicated genome system
- Principal Investigator
  
  KUHARA Satoru
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyushu University
病原細菌におけるIII型分泌装置のエフェクター蛋白質の情報解析的予測Principal Investigator
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2005 – 2006
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Nara Institute of Science and Technology
病原遺伝子データベースの構築およびゲノム全遺伝子の相互比較による相関解析Principal Investigator
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nara Institute of Science and Technology
病原性データベースの構築およびゲノム全遺伝子の相互比較による相関解析Principal Investigator
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2003
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
大腸菌O157の病原遺伝子発現における外来性tRNA遺伝子の役割Principal Investigator
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2002 – 2003
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including Mycology)
- Research Institution
  Osaka University

[Book] よくわかるバイオインフォマティクス入門2018
- Author(s)
  黒川顕, 森宙史, 東光一
- Pages
  123-136
- Total Pages
  208
- Publisher
  講談社
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] 微生物統合データベースによる微生物と環境の研究への貢献, 難培養微生物研究の最新技術 III―微生物の生き様に迫り課題解決へ―2015
- Author(s)
  森宙史、東光一、山田拓司、黒川顕
- Total Pages
  216
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-221S0002
[Book] メタゲノムデータベース,メタゲノム解析技術の最前線2010
- Author(s)
  森宙史,丸山史人,黒川顕
- Publisher
  シーエムシー出版,東京.
- Data Source
  KAKENHI-PROJECT-22380176
[Book] 難培養微生物研究の最新技術II-ゲノム解析を中心とした最前線と将来展望-2010
- Author(s)
  森宙史, 丸山史人, 黒川顕
- Total Pages
  287
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-20310116
[Book] 第8章メタゲノムインフォマティクス.難培養微生物研究の最新技術 II - ゲノム解析を中心とした最前線と将来展望- Current Technology and Perspectives for Yet-uncultivated Microbial Resources2010
- Author(s)
  森宙史、丸山史人、黒川顕
- Publisher
  CMC 出版,東京
- Data Source
  KAKENHI-PROJECT-22592032
[Book] メタゲノムインフォマティクス,難培養微生物研究の最新技術II2010
- Author(s)
  森宙史,丸山史人,黒川顕
- Publisher
  シーエムシー出版,東京.
- Data Source
  KAKENHI-PROJECT-22380176
[Book] 第2章メタゲノムデータベース. メタゲノム解析技術の最前線. Metagenomics:a new frontier of bacterial community researches2010
- Author(s)
  森宙史、丸山史人、*黒川顕
- Publisher
  CMC 出版,東京
- Data Source
  KAKENHI-PROJECT-22592032
[Book] 難培養微生物研究の最新技術II2010
- Author(s)
  森宙史, 丸山史人, 黒川顕
- Total Pages
  287
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-20310116
[Book] 難培養微生物研究の最新技術II2010
- Author(s)
  森宙史, 丸山史人, 黒川顕
- Total Pages
  287
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-221S0002
[Book] メタゲノム解析技術の最前線2010
- Author(s)
  森宙史, 丸山史人, 黒川顕
- Total Pages
  231
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-20310116
[Book] メタゲノム解析技術の最前線2010
- Author(s)
  森宙史, 丸山史人, 黒川顕
- Total Pages
  231
- Publisher
  シーエムシー出版
- Data Source
  KAKENHI-PROJECT-221S0002
[Book] 実験医学4月増刊号「バイオインフォマティクスツールの開発と生命研究への応用の最前線」2008
- Author(s)
  黒川顕、服部正平
- Total Pages
  226
- Publisher
  羊土社,東京
- Data Source
  KAKENHI-PROJECT-18310132
[Book] 実験医学4月増刊号「バイオデータベースとソフトウェア最前線」2008
- Author(s)
  黒川顕, 他
- Total Pages
  225
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-20310116
[Book] バイオデータベースとウェブツールの手とり足とり活用法(改訂第2版)2007
- Author(s)
  黒川顕
- Publisher
  羊土社
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Book] 実験医学4月増刊号「バイオインフォマティクスツールの開発と生命研究への応用の最前線」2007
- Author(s)
  黒川顕, 服部正平
- Publisher
  羊土社,東京
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Book] 細胞工学別冊「比較ゲノム学から読み解く生命システム」2007
- Author(s)
  黒川顕, 服部正平
- Publisher
  秀潤社,東京
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Book] 細胞工学別冊「比較ゲノム学から読み解く生命システム」2007
- Author(s)
  黒川顕、服部正平
- Total Pages
  196
- Publisher
  秀潤社,東京
- Data Source
  KAKENHI-PROJECT-18310132
[Book] バイオデータベースとウェブツールの手とり足とり活用法(改訂第2版)2007
- Author(s)
  黒川顕
- Total Pages
  254
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-18310132
[Book] The Biology of Vibrios. (ASM Press)2006
- Author(s)
  T.Iida, K.Kurokawa
- Publisher
  Comparative genomics : the genome configuration and the driving forces in the evolution of vibrios.
- Data Source
  KAKENHI-PROJECT-18310132
[Book] The Biology of Vibrios2006
- Author(s)
  T. Iida, K. Kurokawa
- Publisher
  ASM Press.Washington,D.C.
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Book] Biology of Vibrios2006
- Author(s)
  Iida, T., Kurokawa, K.
- Publisher
  ASM press
- Data Source
  KAKENHI-PROJECT-17681024
[Book] 微生物はなぜ病気を起こすか.ゲノムの特徴2004
- Author(s)
  黒川顕
- Total Pages
  206
- Publisher
  林英生
- Data Source
  KAKENHI-PROJECT-16013230
[Journal Article] Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.2019
- Author(s)
  Takizawa N, Ogura Y, Fujita Y, Noda T, Shigematsu H, Hayashi T, Kurokawa K
- Journal Title
  
  Virology
  
  Volume: 531 Pages: 126-140
- DOI
  10.1016/j.virol.2019.03.004
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Essential cellular modules for the proliferation of the primitive cell2018
- Author(s)
  Higashi Koichi、Kawai Yoshikazu、Baba Tomoya、Kurokawa Ken、Oshima Taku
- Journal Title
  
  Geoscience Frontiers
  
  Volume: 9 Pages: 1155-1161
- DOI
  10.1016/j.gsf.2016.11.013
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004
[Journal Article] VITCOMIC2 : visualization tool for the phylogenetic composition of microbial communities based on 16SrRNA gene amplicons and metagenomic shotgun sequencing2018
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
- Journal Title
  
  BMC Systems Biology
  
  Volume: 12 Pages: 30-30
- DOI
  10.1186/s12918-018-0545-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-17H01854, KAKENHI-PROJECT-15K07214, KAKENHI-PROJECT-16H06279
[Journal Article] Latent environmental allocation of microbial community data.2018
- Author(s)
  Higashi K, Suzuki S, Kurosawa S, Mori H, Kurokawa K
- Journal Title
  
  PLoS Comp. Biol.
  
  Volume: 14 Issue: 6
- DOI
  10.1371/journal.pcbi.1006143
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H04139, KAKENHI-PROJECT-17H01854, KAKENHI-PROJECT-16H06279
[Journal Article] Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-3.2018
- Author(s)
  Tajima Naoyuki、Kanesaki Yu、Sato Shusei、Yoshikawa Hirofumi、Maruyama Fumito、Kurokawa Ken、Ohta Hiroyuki、Nishizawa Tomoyasu、Asayama Munehiko、Sato Naoki
- Journal Title
  
  Genome Annotations
  
  Volume: 6
- DOI
  10.1128/genomea.01608-17
- NAID
  120006457123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-16H01782, KAKENHI-PROJECT-17H03715, KAKENHI-PROJECT-15K07368, KAKENHI-PROJECT-15K07557
[Journal Article] Differently localized lysophosphatidic acid acyltransferases crucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis2017
- Author(s)
  Nobusawa Takashi、Hori Koichi、Mori Hiroshi、Kurokawa Ken、Ohta Hiroyuki
- Journal Title
  
  The Plant Journal
  
  Volume: 90 Pages: 547-559
- DOI
  10.1111/tpj.13512
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004
[Journal Article] Comprehensive microbiome analysis of tonsillar crypts in IgA nephropathy.2017
- Author(s)
  Watanabe H, Goto S, Mori H, Higashi K, Hosomichi K, Takanashi N, Aizawa N, Yamada T, Inoue I, Kurokawa K, Narita I.
- Journal Title
  
  Nephrol Dial Transplant.
  
  Volume: in press Pages: 2072-2079
- DOI
  10.1093/ndt/gfw343
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26293201, KAKENHI-PROJECT-26670429, KAKENHI-PROJECT-15K09250, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-15H02373
[Journal Article] Intestinal IgA as a modulator of the gut microbiota2017
- Author(s)
  Okai S, Usui F, Ohta M, Mori H, Kurokawa K, Matsumoto S, Kato T, Miyauchi E, Ohno H, Shinkura R
- Journal Title
  
  Gut Microbes
  
  Volume: 6 Pages: 486-492
- DOI
  10.1080/19490976.2017.1310357
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K18711, KAKENHI-PROJECT-15H04732
[Journal Article] Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites.2017
- Author(s)
  Yonezawa T, Segawa T, Mori H, Campos PF, Hongoh Y, Endo H, Akiyoshi A, Manabe M, Kohno N, Nishida S, Wu J, Jin H, Kishino H, Kurokawa K, Yoshifumi N, Tanabe H, Mukoyama H, Yoshida K, Rasoamiaramanana A, Yamagishi S, Hayashi Y, Yoshida A, Koike H, Akishinonomiya F, Willerslev E, Hasegawa M.
- Journal Title
  
  Current Biology
  
  Volume: 27 Issue: 1 Pages: 1-10
- DOI
  10.1016/j.cub.2016.10.029
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26281017, KAKENHI-PROJECT-16K15057, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-15H03262, KAKENHI-PROJECT-16H01824, KAKENHI-PROJECT-16H02788
[Journal Article] High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in　mice.2016
- Author(s)
  Okai S, Usui F, Yokota S, Hori-I Y, Hasegawa M, Nakamura T, Kurosawa M, Okada S, Yamamoto K, Nishiyama E, Mori H, Yamada T, Kurokawa K, Matsumoto S, Nanno M, Naito T, Watanabe Y, Kato T, Miyauchi E, Ohno H, Shinkura R.
- Journal Title
  
  Nat Microbiol.
  
  Volume: 1 Pages: 16103-16103
- DOI
  10.1038/nmicrobiol.2016.103
- NAID
  120005818448
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-25112006, KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-15H04732, KAKENHI-PROJECT-16H05207, KAKENHI-PROJECT-16J11295, KAKENHI-PROJECT-16K18711, KAKENHI-ORGANIZER-25112001
[Journal Article] A key genetic factor for fucosyllactose utilization affects infant gut microbiota development2016
- Author(s)
  Matsuki T, Yahagi K, Mori H, Matsumoto H, Hara T, Tajima S, Ogawa E, Kodama H, Yamamoto K, Yamada T, Matsumoto S, Kurokawa K
- Journal Title
  
  Nature Communications
  
  Volume: 7 Pages: 11939-11939
- DOI
  10.1038/ncomms11939
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-26106004
[Journal Article] H-NS facilitates sequence diversification of horizontally transferred DNAs during their integration in host chromosomes2016
- Author(s)
  Higashi K., Tobe T., Kanai A., Uyar E., Ishikawa S., Suzuki Y., Ogasawara N., Kurokawa K., and Oshima T
- Journal Title
  
  PLoS Genetics
  
  Volume: 12
- DOI
  10.1371/journal.pgen.1005796
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26450090, KAKENHI-PROJECT-15K16125, KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-25292206
[Journal Article] Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses.2015
- Author(s)
  Yuta Matsumura, Hidayu Al-saari, Sayaka Mino, Satoshi Nakagawa, Fumito Maruyama, Yoshitoshi Ogura, Tetsuya Hayashi, Ken Kurokawa, Toko Sawabe, Tomoo Sawabe.
- Journal Title
  
  Int. J. Hydrogen Energy
  
  Volume: 40 Pages: 9137-9146
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data2015
- Author(s)
  Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
- Journal Title
  
  PLoS ONE
  
  Volume: 10
- DOI
  10.1371/journal.pone.0126967
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26670717, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-25710016
[Journal Article] Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance2015
- Author(s)
  Kato H, Mori H, Maruyama F, Toyoda A, Oshima K, Endo R, Fuchu G, Miyakoshi M, Dozono A, Ohtsubo Y, Nagata Y, Hattori M, Fujiyama A, Kurokawa K, Tsuda M
- Journal Title
  
  DNA Res
  
  Volume: 22 Pages: 413-424
- DOI
  10.1093/dnares/dsv023
- NAID
  120005850199
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-26660054, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-15H04471
[Journal Article] Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence.2015
- Author(s)
  Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M.
- Journal Title
  
  The ISME Journal
  
  Volume: in press Pages: 1166-1176
- DOI
  10.1038/ismej.2014.209
- NAID
  120005667717
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-221S0002
[Journal Article] Complete genome sequence of a phenanthrene degrader, Mycobacterium sp. strain EPa45 (NBRC 110737), isolated from a phenanthrene-degrading consortium2015
- Author(s)
  Kato H, Ogawa N, Ohtsubo Y, Oshima K, Toyoda A, Mori H, Nagata Y, Kurokawa K, Hattori M, Fujiyama A, Tsuda M
- Journal Title
  
  Genome Announc
  
  Volume: 3
- DOI
  10.1128/genomea.00782-15
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-26660054, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-15H04471
[Journal Article] DomSign:a top-down annotation pipeline to enlarge enzyme space in the protein universe.2015
- Author(s)
  Wang T, Mori H, Zhang C, Kurokawa K, Xing X, Yamada T
- Journal Title
  
  BMC Bioinfo.
  
  Volume: 16 Pages: 96-96
- DOI
  10.1186/s12859-015-0499-y
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24770015, KAKENHI-PUBLICLY-25108708, KAKENHI-PROJECT-25710016, KAKENHI-PROJECT-26670717, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106004
[Journal Article] 冥王代生命学の創成2015
- Author(s)
  黒川顕
- Journal Title
  
  Japan Geoscience Letters
  
  Volume: 11(3) Pages: 5-7
- Data Source
  KAKENHI-ORGANIZER-26106001
[Journal Article] Origin of methane is serpentinite-hosted hydrothermal systems: the CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring.2014
- Author(s)
  Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
- Journal Title
  
  Earth Planetary Sci. Lett.
  
  Volume: 386 Pages: 112-125
- DOI
  10.1016/j.epsl.2013.11.001
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-21109004, KAKENHI-PLANNED-21109006, KAKENHI-PROJECT-23224013, KAKENHI-PROJECT-23244084, KAKENHI-PROJECT-25400524, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106002
[Journal Article] Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes.2014
- Author(s)
  Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M Kurokawa K
- Journal Title
  
  DNA Res.
  
  Volume: 21 Pages: 217-227
- DOI
  10.1093/dnares/dst052
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-24658068, KAKENHI-PROJECT-24770015, KAKENHI-PROJECT-25292043, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-221S0002
[Journal Article] 生命誕生場の謎に挑む冥王代生命学の創成2014
- Author(s)
  黒川顕
- Journal Title
  
  実験医学
  
  Volume: 32(16) Pages: 2656-2656
- Data Source
  KAKENHI-ORGANIZER-26106001
[Journal Article] Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation2014
- Author(s)
  Hori, Koichi, et al.
- Journal Title
  
  Nature Communication
  
  Volume: 5 Pages: 3978-3978
- DOI
  10.1038/ncomms4978
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14J12093, KAKENHI-PROJECT-24570042, KAKENHI-PROJECT-25292206
[Journal Article] Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.2014
- Author(s)
  Tajima N, Sato S,Maruyama F,Kurokawa K,Ohta H, Tabata S, Sekine K, Moriyama T, Sato N
- Journal Title
  
  J Plant Res.
  
  Volume: 127 Pages: 389-397
- DOI
  10.1007/s10265-014-0627-1
- NAID
  40020051727
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-25870155, KAKENHI-PROJECT-221S0002
[Journal Article] ヒトメタゲノムの大規模コホート研究2014
- Author(s)
  森宙史，山田拓司，黒川顕
- Journal Title
  
  生物の科学「遺伝」
  
  Volume: 67(3) Pages: 279-282
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] A novel small regulatory RNA enhances cell motility in enterohemorrhagic <i>Escherichia coli</i>2014
- Author(s)
  Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K,Ohinishi M, Sekine Y
- Journal Title
  
  The Journal of General and Applied Microbiology
  
  Volume: 60(1) Issue: 1 Pages: 44-50
- DOI
  10.2323/jgam.60.44
- NAID
  130004802264
- ISSN
  0022-1260, 1349-8037
- Language
  English
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-26460525, KAKENHI-PROJECT-221S0002
[Journal Article] CLAST: CUDA implemented large-scale alignment search tool2014
- Author(s)
  Yano M, Mori H, Akiyama Y, Yamada T, Kurokawa K
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 15 Pages: 406-406
- DOI
  10.1186/s12859-014-0406-y
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-24770015, KAKENHI-PROJECT-25292206, KAKENHI-PLANNED-26106004, KAKENHI-PROJECT-221S0002
[Journal Article] Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4.2013
- Author(s)
  Masuda M, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K
- Journal Title
  
  Genome Announc.
  
  Volume: 1(4)
- DOI
  10.1128/genomea.00577-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310131, KAKENHI-PUBLICLY-25117508, KAKENHI-PROJECT-25292206, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-221S0002
[Journal Article] Complete genome sequence of Propionibacterium acnes isolate from sarcoidosis patient2013
- Author(s)
  K. Minegishi, C. Aikawa, A.Furukawa, T. Watanabe, T. Nakano, Y. Ogura, Y. Ohtsubo, K. Kurokawa, T. Hayashi, F. Maruyama, I. Nakagawa,Y. Eishi
- Journal Title
  
  Genome Announc
  
  Volume: 1
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient2013
- Author(s)
  Minegishi K, Aikawa C, Furukawa A, Watanabe T, Nakano T, Ogura Y, Ohtsubo Y, Kurokawa K, Hayashi T, Maruyama F, Nakagawa I, Eishi Y
- Journal Title
  
  Genome Announcment
  
  Volume: 1 Pages: 1-1
- DOI
  10.1128/genomea.00016-12
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J05796, KAKENHI-PROJECT-12J06919, KAKENHI-PROJECT-22380176, KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-23651183, KAKENHI-PROJECT-23790478, KAKENHI-PROJECT-24659402, KAKENHI-PUBLICLY-25125708, KAKENHI-PROJECT-25293370, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-25670775, KAKENHI-PROJECT-221S0002, KAKENHI-PUBLICLY-23125511
[Journal Article] Updating the Vibrio clades defined by multilocus sequence phylogeny : Proposal of eight new clades, and the description of Vibrio tritonius sp. Nov.2013
- Author(s)
  Sawabe T, Ogura Y, Matsumura Y, Gao F, Amin A, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R,Thompson F, Gomez -Gil B, Christen R,Maruyama F,Kurokawa K, Hayashi T
- Journal Title
  
  Frontiers in Aquatic Microbiol
  
  Volume: 4 Pages: 1-14
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23310131
[Journal Article] Updating the Vibrio clades defined by multilocus sequence phylogeny: Proposal of eight new clades, and the description of Vibrio tritonius sp. nov.2013
- Author(s)
  T. Sawabe, Y. Ogura, Y. Matsumura et al.
- Journal Title
  
  Frontiers in Aquatic Microbiol.
  
  Volume: 4 Pages: 1-14
- DOI
  10.3389/fmicb.2013.00414
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-25292122, KAKENHI-PROJECT-25305013, KAKENHI-PROJECT-23310131
[Journal Article] Updating the Vibrio clades defined by multilocus sequence phylogeny: Proposal of eight new clades, and the description of Vibrio tritonius sp. nov.2013
- Author(s)
  Sawabe T, Ogura Y, Matsumura Y, Gao F, Amin A, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson F, Gomez-Gil B, Christen R, Maruyama F, Kurokawa K, Hayashi T
- Journal Title
  
  Frontiers in Aquatic Microbiol.
  
  Volume: 4 Pages: 1-14
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Complete Genome Sequence of the serotype k Streptococcus mutans LJ232012
- Author(s)
  C. Aikawa, N. Furukawa, T. Watanabe, K. Minegishi, A. Furukawa, Y. Eishi,K. Oshima, K. Kurokawa, M. Hattori,K. Nakano, *F. Maruyama, I. Nakagawa and T. Ooshima
- Journal Title
  
  J. Bacteriol
  
  Volume: 194 Pages: 2754-2754
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] Novel conjugative transferable multiple drug resistance plasmid pAQU1 from Photobacterium damselae subsp. damselae isolated from marine aquaculture environment2012
- Author(s)
  L. Nonaka, F. Maruyama, M.Miyamoto, M. Miyakoshi, K. Kurokawa, M. Masuda
- Journal Title
  
  Microb.Environ
  
  Volume: 27 Pages: 263-272
- NAID
  10030869338
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] GHOSTM: A GPU-accelerated homology search tool for metagenomics2012
- Author(s)
  Suzuki S, Ishida T, Kurokawa K, Akiyama Y
- Journal Title
  
  PLoS one
  
  Volume: 7 Pages: 1-8
- DOI
  10.1371/journal.pone.0036060
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J08766, KAKENHI-PROJECT-22380176, KAKENHI-PROJECT-23310131, KAKENHI-PROJECT-221S0002
[Journal Article] Ehrlich, and Bork: Enterotypes of the human gut microbiome2011
- Author(s)
  M. Arumugam, 18人, K. Kurokawa, 19人, MetaHIT Consortium, J. Weissenbach, S. D
- Journal Title
  
  Nature
  
  Volume: 473 Pages: 174-180
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22380176
[Journal Article] CRISPR inhibition of prophage acquisition in Streptococcus pyogenes2011
- Author(s)
  T. Nozawa, N. Furukawa, C. Aikawa, T. Watanabe, B. Haobam, K. Kurokawa, *F. Maruyama, I. Nakagawa
- Journal Title
  
  PLoS One
  
  Volume: 6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S2011
- Author(s)
  N. Tajima, S. Sato, F. Maruyama, N.Kaneko, V. Sasaki, K. Kurokawa, H.Ohta, Y. Kanesaki, H. Yoshikawa, S. Tabata, M. Ikeuchi and *N. Sato
- Journal Title
  
  DNA Res
  
  Volume: 18 Pages: 393-399
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] Complete Genome Sequence of the Periodontogenic Bacterium Porphyromonas gingivalis TDC602011
- Author(s)
  F. Maruyama, T. Watanabe, T. Nozawa, A. Aoki, S. Okano, Y. Shibata, K. Oshima, K. Kurokawa, M. Hattori, I. Nakagawa, Y. Abiko
- Journal Title
  
  J. Bacteriol
  
  Volume: 193 Pages: 4259-4260
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] Complete genome sequence of the wild-type commensal Escherichia coil strain SE15, belonging to phylogenetic group B2.2010
- Author(s)
  H.Toh, K.Oshima, A.Toyoda, Y.Ogura, T.Ooka, (他3名) K.Kurokawa, (他3名) T.Hayashi, M.Hattori
- Journal Title
  
  J.Bacteriol. 192(4)
  
  Pages: 1165-1166
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences2010
- Author(s)
  H. Mori, F. Maruyama, K. Kurokawa.VITCOMIC
- Journal Title
  
  BMC Biofinfo
  
  Volume: 11 Pages: 332-332
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22592032
[Journal Article] VITCOMIC : visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences2010
- Author(s)
  Mori, H., Maruyama, F., Kurokawa, K.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 11 Pages: 332-332
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] RNA polymerase trafficking in Bacillus subtilis cells.2010
- Author(s)
  Ishikawa S, Oshima T, Kurokawa K, Kusuya Y, Ogasawara N.
- Journal Title
  
  J Bacteriol 192
  
  Pages: 5778-5787
- Data Source
  KAKENHI-PROJECT-20241045
[Journal Article] VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences2010
- Author(s)
  H. Mori, F. Maruyama and K. Kurokawa
- Journal Title
  
  BMC Bioinfo
  
  Volume: 11 Pages: 332-332
- DOI
  10.1186/1471-2105-11-332
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22380176
[Journal Article] The complete genome sequence and comparative genome analysis of enteropathogenic E. coli 0127:H6 strain E2348/69.2009
- Author(s)
  A.Iguchi, N.R.Thomson, Y.Ogura, D.Saunders, T.Ooka, 他, K.Kurokawa, 他, T.Hayashi, J.Parkhill, G.Frankel
- Journal Title
  
  J.Bacteriol. 191(1)
  
  Pages: 347-354
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Comparative genomics reveal the mechanism of the parallel evolution of 0157 and non-0157 enterohemorrhagic Escherichia coli.2009
- Author(s)
  Y.Ogura, T.Ooka, (他7名), K.Kurokawa, T.Tobe, M.Hattori, T.Hayashi
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 106(42)
  
  Pages: 17939-17944
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] メタゲノム研究の最前線-454とメタゲノム解析-2009
- Author(s)
  森宙史, 林哲也, 黒川顕
- Journal Title
  
  蛋白質核酸酵素 54
  
  Pages: 1264-1270
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Development of a multiplex PCR-based rapid typing method for enterohemorrhagic Escherichia 0157 strains.2009
- Author(s)
  T.Ooka, (他3名), K.Kurokawa, Y.Ogura, (他6名), T.Hayashi
- Journal Title
  
  J.Clin.Microbiol. 47(9)
  
  Pages: 2888-2894
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] J Bacteriol2009
- Author(s)
  Uyar E, Kurokawa K, Yoshimura M, Ishikawa S, Ogasawara N, Oshima T.
- Journal Title
  
  Differential binding profiles of StpA in wild-type and h-ns mutant cells : a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis. 191
  
  Pages: 2388-2391
- Data Source
  KAKENHI-PROJECT-20241045
[Journal Article] Complete DNA sequence and analysis of the transferable multiple drug resistance plasmids(R-plasmids) from Photobacterium damselae subsp. Piscicida isolated in Japan and USA2008
- Author(s)
  Kim, MJ., Hirono, I., Kurokawa, K., Maki, T., Hawke, J., Kondo, H., Santos, M., Aoki, T
- Journal Title
  
  Antimicrob. Agents Chemother 52
  
  Pages: 606-611
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative genomic analysis using microarray demonstrates strong correlation between presence of Vp-PAI and pathogenicity in Kanagawa phenomenon-positive Vibrio parahaemolyticus2008
- Author(s)
  Izutsu, K., Kurokawa, K., Tashiro, K., Kuhara, S., Hayashi, T., Honda, T., Iida, T
- Journal Title
  
  Infect. Immun. 76(3)
  
  Pages: 1016-1023
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping.2008
- Author(s)
  Y.Ogura, 他, K.Kurokawa, 他, T.Ooka, 他, T.Hayashi
- Journal Title
  
  J.Bacteriol. 190(21)
  
  Pages: 6948-6960
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20310116
[Journal Article] Comparative genomic analysis using microayyay demonstrates a strong correlation between the presence of the 80-kilobase pathogenicity island pathogenicity in Kanagawa phenomenon-positive Vibro parahamolyticus strains2008
- Author(s)
  Izutsu, K・Kurokawa, K・Tashiro, K・Kuhara, S・Hayashi, T・Honda, T・Iida, T
- Journal Title
  
  Infect. Immun 76(3)
  
  Pages: 1016-1023
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] The entire organization of transcription unites on the Bacillus subtilis genome2007
- Author(s)
  Kobayashi, H., Akitomi, J., Fujii, N., Kobayashi, K, Amin, M.A., Kurokawa, K., Ogasawara, N., Kanaya, S
- Journal Title
  
  BMC Genomics 8
  
  Pages: 197-201
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.2007
- Author(s)
  Kurokawa K., et. al.
- Journal Title
  
  DNA Res. 14
  
  Pages: 169-181
- NAID
  120005302320
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kurokawa K., et. al.
- Journal Title
  
  DNA Res. 14
  
  Pages: 169-181
- NAID
  120005302320
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] メタゲノミクスのバイオインフォマティクス2007
- Author(s)
  黒川顕
- Journal Title
  
  化学と生物 45
  
  Pages: 495-501
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, VK., Srivastava, TR, Taylor, TD., Noguchi, D., Mori, H., Ogura, Y., Ehrlich, DS., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T., Hattori, M
- Journal Title
  
  Anaerobe 13
  
  Pages: 220-227
- NAID
  120005302320
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Extensive genomic diversity and selective conservation of virulence-determinants in enterohaemorrhagic Escherichia coli strains of O157 and non-O157 serotypes2007
- Author(s)
  Ogura, Y., Ooka Asadulghani., A., Terajima, J, Nougayrede, J-R., Kurokawa, K., Tashiro, K., Tobe, T., Nakayama, K., Kuhara, S., Oswald, E., Watanabe, H., Hayashi, T
- Journal Title
  
  DNARes 14
  
  Pages: 155-168
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Vibrionaceae versatile bacterial family with evolutionary conserved variability2007
- Author(s)
  Dryselius, R., Kurokawa, K., Iida, T.
- Journal Title
  
  Res. Microbiol 158
  
  Pages: 479-486
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Analysis of invariant sequences in 266 complete genomes2007
- Author(s)
  Goto, N., Kurokawa, K., Yasunaga, T
- Journal Title
  
  Gene 401
  
  Pages: 172-180
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] メタゲノミクスのバイオインフォマティクス2007
- Author(s)
  黒川顕
- Journal Title
  
  化学と生物 45
  
  Pages: 495-501
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.2007
- Author(s)
  Kurokawa, K., et al.
- Journal Title
  
  DNA Res. 14
  
  Pages: 169-181
- NAID
  120005302320
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] Comparative genomics : genome configuration and the driving forces in the evolution of vibrios2007
- Author(s)
  Iida, T., Kurokawa, K
- Journal Title
  
  Clin. Microbiol. Infect 13
  
  Pages: 48-54
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Vibrionaceae : versatile bacterial family with evolutionaly conserved variability.2007
- Author(s)
  Dryselius, R., Kurokawa, K., Iida, T.
- Journal Title
  
  Res. Microbiol. (In press)
- Data Source
  KAKENHI-PROJECT-17681024
[Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.2007
- Author(s)
  Kurokawa, K., et. al.
- Journal Title
  
  DNA Res 14
  
  Pages: 169-181
- NAID
  120005302320
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17018026
[Journal Article] Distribution of stable DnaA-binding sites on the Bacillus Subtilis genome detected using a modified ChIP-chip method2007
- Author(s)
  Ishikawa, S., Ogura, Y., Yoshimura, M., Okumura, H., Cho, E., Kawai, Y., Kurokawa, K., Oshima, T., Ogasawara, N
- Journal Title
  
  DNA Res 14
  
  Pages: 169-181
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Complexity of the genomic diversity of enterohaemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligo DNA microarray and the Whole Genome PCR Scanning2006
- Author(s)
  Ogura, Y., Kurokawa, K., Ooka, T., Tashiro, K., Tobe, T., Ohnishi, M., Nakayama, K., Morimoto, T., Terajima, J., Watanabe, H., Kuhara, S., Hayashi, T
- Journal Title
  
  DNA Res 13
  
  Pages: 3-14
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of phosphatidylinositol mannoside in Mycobacteria2006
- Author(s)
  Morita, Y., Sena, C., Waller, R., Kurokawa, K., Semee, M., Nakatani, F., Haites, R., Billman-Jacobe, H., McConville, M., Maeda, Y., Kinoshita, T
- Journal Title
  
  J. Biol. Chem. 281
  
  Pages: 25143-25155
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] DPClus : A density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks2006
- Author(s)
  Altaf-Ul-Amin, M., Tuji, H., Kurokawa, K., Asahi, H., Shnbo, Y., Kanaya, S
- Journal Title
  
  The Biology of Vibrios (ASM press)
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Complexity of the genomic diversity in enterhemorrhagic Escherichia coli 0157 revealed bye the combinational use of the 0157 Sakai.2006
- Author(s)
  Ogura, Y., Kurokawa, K., et al.
- Journal Title
  
  DNA Res. 13
  
  Pages: 3-14
- Data Source
  KAKENHI-PROJECT-17681024
[Journal Article] Bioinformatics tool for genomic era ; A step towards the in silico experiments - focused on molecular cloning2006
- Author(s)
  Ohyama, A., Kurokawa, K., Enai, K., Saitoh, H., Kanaya, S., Altaf-Ul-Amin, M., Ogasawara, N
- Journal Title
  
  J. Comp. Aid. Chem 7
  
  Pages: 102-115
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Prediction of protein functions based on protein-protein interaction networks : A min-cut approach2006
- Author(s)
  Altaf-Ul-Amin, M., Koma, T., Kurokawa, K., Kanaya, S
- Journal Title
  
  BMC Bioinfo 7
  
  Pages: 207-220
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase2006
- Author(s)
  Oshima, T., Ishikawa, S., Kurokawa, K., Aiba, H., Ogasawara, N
- Journal Title
  
  J. Comp. Aid. Chem 7
  
  Pages: 150-156
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparison of protein complexes predicted from PPI networks by DPClus and Newman clustering algorithms2006
- Author(s)
  Tuji, H., Altaf-Ul-Amin, M., Arita, M., Nishio, H., Shinbo, Y., Kurokawa, K., Kanaya, S
- Journal Title
  
  Trans. Bioinformat 47
  
  Pages: 31-41
- NAID
  130000022290
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Elucidating conservation of genes in multiple genomes based on graphs con figured by bidirectional best-hit relationships2006
- Author(s)
  Maeno, H., Altaf-Ul-Amin, M., Shinbo, Y., Kurokawa, K., Ogasawara, N., Kanaya, S
- Journal Title
  
  Trans. Bioinformat 47
  
  Pages: 1-11
- NAID
  130000022287
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Sperical SOM and arrangement of neurons using herix on sphere2006
- Author(s)
  Nishio, H., Altaf-Ul-Amin, M., Kurokawa, K., Kanaya, S
- Journal Title
  
  IPSJ Transactions on Mathematical Modeling and Its Applications 47, 14
  
  Pages: 56-60
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Journal Article] Comparative genomics : genome configuration and the driving forces in the evolution of vibrios.2006
- Author(s)
  Iida, T., Kurokawa.K.
- Journal Title
  
  Biology of Vibrios (In press)
- Data Source
  KAKENHI-PROJECT-17018026
[Patent] 情報処理システム、情報処理方法、及びプログラム2017
- Inventor(s)
  黒川顕、東光一、森宙史
- Industrial Property Rights Holder
  大学共同利用機関法人情報・システム研究機構
- Industrial Property Rights Type
  特許
- Industrial Property Number
  2017-012340
- Filing Date
  2017-01-26
- Data Source
  KAKENHI-PROJECT-16H06279
[Patent] 情報処理システム、情報処理方法、及びプログラム2017
- Inventor(s)
  黒川顕、東光一、森宙史
- Industrial Property Rights Holder
  黒川顕、東光一、森宙史
- Industrial Property Rights Type
  特許
- Filing Date
  2017
- Overseas
- Data Source
  KAKENHI-PLANNED-26106004
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡邊治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Filing Date
  2006-06-02
- Acquisition Date
  2006-06-13
- Data Source
  KAKENHI-PROJECT-18310132
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡辺治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Acquisition Date
  2006-06-13
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Patent] 微生物の識別方法、及び該方法に使用するプライマー並びに識別キット2006
- Inventor(s)
  大岡唯祐, 林哲也, 小椋義俊, 中山恵介, 黒川顕, 寺嶋淳, 渡辺治雄
- Industrial Property Rights Holder
  大岡唯祐, 林哲也
- Industrial Property Number
  2006-155279
- Filing Date
  2006-06-02
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] VITCOMIC2 and MicrobeDB. jp : Analyzing and comparing microbial community sequencing data2019
- Author(s)
  Mori H, Kurokawa K.
- Organizer
  Frontiers of Genome Science 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] VITCOMIC2 : Visualization and analysis tool for the phylogenetic composition of microbial communities based on 16S rRNA gene sequences2018
- Author(s)
  Mori H, Kurokawa K.
- Organizer
  ASM Microbe 2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Integrated database for microbe “MicrobeDB. jp”2018
- Author(s)
  Kurokawa K
- Organizer
  JSME2018&10thASME
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 大量データに対応した微生物群集の系統組成推定・描画ツールVITCOMIC22017
- Author(s)
  森宙史, 丸山貴之, 矢野雅大, 黒川顕
- Organizer
  第11回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] VITCOMIC2 : visualization of the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing2017
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
- Organizer
  ProkaGenomics 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] VITCOMIC2 : Visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing2017
- Author(s)
  Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K.
- Organizer
  GIW 2017
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 汚染土壌細菌叢の新規環境への定着及び再汚染のメタゲノム解析2016
- Author(s)
  加藤広海、森宙史、渡来直生、永山浩史、大坪嘉行、永田裕二、豊田敦、黒川顕、津田雅孝
- Organizer
  第10回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 土壌微生物のノトバイオロジー2016
- Author(s)
  加藤広海、森宙史、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
- Organizer
  日本農芸化学会2016年度大会
- Place of Presentation
  札幌
- Year and Date
  2016-03-27
- Invited
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 環境試料RNAの大量シーケンシングと経時解析による有用遺伝子の大規模検索2016
- Author(s)
  中村祐哉、森宙史、黒川顕、中島信孝
- Organizer
  日本農芸化学会2016年度大会
- Place of Presentation
  札幌
- Year and Date
  2016-03-27
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 冥王代生命学の創成2016
- Author(s)
  黒川顕
- Organizer
  第10回日本ゲノム微生物学会
- Place of Presentation
  東京工業大学
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-ORGANIZER-26106001
[Presentation] 大規模オミックスデータの可視化・解析ツール「FuncTree」の開発2016
- Author(s)
  山手雄太、森宙史、黒川顕、山田拓司
- Organizer
  第10回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 微生物統合データベースを高度化する微生物環境オントロジーと解析アプリケーションの開発2016
- Author(s)
  鈴木真也、山本希、森宙史、黒川顕
- Organizer
  第10回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 微生物群集動態の原理解明に向けた再現モデルの構築2016
- Author(s)
  渡来直生、森宙史、加藤広海、大坪嘉行、小椋義俊、永田裕二、豊田敦、藤山秋佐夫、林哲也、津田雅孝、黒川顕
- Organizer
  第10回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 微生物統合データベー MicrobeDB.jpの検索システムの高度化と新解析パイプライン2016
- Author(s)
  森宙史、藤澤貴智、千葉啓和、山本希、内山郁夫、菅原秀明、中村保一、黒川顕、MicrobeDB.jpプロジェクトチーム
- Organizer
  第10回日本ゲノム微生物学会年会
- Place of Presentation
  東京
- Year and Date
  2016-03-04
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] The mechanisms of Copper acquisition and detoxification in Aspergillus fumigatus.2015
- Author(s)
  Kusuya Y, Kurokawa K, Takahashi H.
- Organizer
  ISHAM 2015
- Place of Presentation
  Melbourne, Australia
- Year and Date
  2015-05-04
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015
- Author(s)
  Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
- Organizer
  57th ASH Annual Meeting
- Place of Presentation
  Orlando, FL, USA
- Year and Date
  2015-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Asian Microbiome Project: 次世代シーケンサーを用いたアジア人腸内細菌叢のプロファイル化2014
- Author(s)
  東佳那子、百田理恵、山本麻寿紗、林哲也、小椋義俊、黒川顕、豊田敦、加藤和人、AMP study group、園元謙二、渡辺幸一、Lee Yuan Kun、中山二郎
- Organizer
  日本生物工学会　第21回九州支部熊本大会
- Place of Presentation
  熊本大学
- Year and Date
  2014-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 土壌微生物の移植メタゲノム2014
- Author(s)
  加藤広海, 森宙史, 丸山史人, 豊田敦, 大坪嘉行, 永田裕二, 藤山秋佐夫, 黒川顕, 津田雅孝
- Organizer
  第8回日本ゲノム微生物学会年会
- Place of Presentation
  東京農業大学　世田谷キャンパス
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Deciphering ancient ecosystems with environmental genomics and “Earth-Life DB”2013
- Author(s)
  Ken Kurokawa
- Organizer
  The 1st ELSI International Symposium
- Place of Presentation
  Tokyo
- Invited
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Time series metagenomic analysis of soil microbial community2013
- Author(s)
  M. Tsuda and K. Kurokawa
- Organizer
  International Symposium on Genome Science "Expanding Frontiers of Genome Science"
- Place of Presentation
  Tokyo
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] メタゲノム解析の現状と将来2013
- Author(s)
  黒川顕
- Organizer
  社団法人企業研究会CAMMフォーラム
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] 微生物統合データベース「MicrobeDB.jp」2013
- Author(s)
  黒川顕
- Organizer
  科学技術振興機構バイオサイエンスデータベースセンターシンポジウム「トーゴーの日シンポジウム2013 -ここまできたライフサイエンスデータベースの統合-」
- Place of Presentation
  東京
- Invited
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] メタゲノミクスの現状と未来2012
- Author(s)
  黒川顕
- Organizer
  情報・システム研究機構シンポジウム2012「生命科学のビッグデータ革命」
- Place of Presentation
  東京
- Year and Date
  2012-11-09
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Development of an integrated analysis system for metagenomics and its applications for soil metagenome analysis2012
- Author(s)
  Kurokawa, K.
- Organizer
  BiWO2011
- Place of Presentation
  東京(招待講演)
- Year and Date
  2012-01-26
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 環境メタゲノミクス2012
- Author(s)
  黒川顕
- Organizer
  日本農芸化学会2012年度大会
- Place of Presentation
  京都(招待講演)
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Metagenomic Analysis of Microbial Community in Soil Contaminated with Aromatic Pollutants2012
- Author(s)
  M. Tsuda, 5 人, Y. Ohtsubo, Y. Nagata, A. Fujiyama, and K. Kurokawa
- Organizer
  Japan-Finland Biotechnology Symposium2012
- Place of Presentation
  Sendai
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Development of an integrated analysis system for metagenomics and a global microbial database MicrobeDB.jp2012
- Author(s)
  K. Kurokawa
- Organizer
  第28回日本微生物生態学会
- Place of Presentation
  豊橋
- Year and Date
  2012-09-20
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] 環境メタゲノミクス2012
- Author(s)
  黒川顕
- Organizer
  日本農芸化学会2011年大会
- Place of Presentation
  京都
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Comparative analysis of H-NS binding profiles of three E.coli strains suggests H-NS binding contributes to sequence diversification of E.coli genome2012
- Author(s)
  Higashi K, Oshima T, Kurokawa K.
- Organizer
  ASM the 112th General Meeting, San Francisco
- Place of Presentation
  California (USA)
- Year and Date
  2012-06-16
- Data Source
  KAKENHI-PROJECT-23310131
[Presentation] 環境メタゲノミクス2012
- Author(s)
  黒川顕
- Organizer
  日本農芸化学会2012年度大会シンポジウム
- Place of Presentation
  京都(招待講演)
- Year and Date
  2012-03-25
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] メタゲノミクスの現状と未来2012
- Author(s)
  黒川顕
- Organizer
  情報・システム研究機構シンポジウム2012「生命科学のビッグデータ革命」
- Place of Presentation
  東京
- Year and Date
  2012-11-09
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Development of an integrated analysis system for metagenomics and its applications for soil metagenome analysis2012
- Author(s)
  K.Kurokawa
- Organizer
  BiWO2011
- Place of Presentation
  東京(招待講演)
- Year and Date
  2012-01-26
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] 生態系の理解に向けたゲノム情報の解析と活用2011
- Author(s)
  黒川顕
- Organizer
  農業環境技術研究所公開セミナー
- Place of Presentation
  つくば(招待講演)
- Year and Date
  2011-12-06
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] ゲノムからメタゲノムへ2011
- Author(s)
  黒川顕
- Organizer
  CBI/JSBi2011合同大会
- Place of Presentation
  神戸(招待講演)
- Year and Date
  2011-11-09
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサーによるメタゲノム解析2011
- Author(s)
  黒川顕
- Organizer
  第63回生物工学会大会
- Place of Presentation
  京都
- Year and Date
  2011-09-27
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] Hydrogen evolution of Vibrio tritonius sp.nov.2011
- Author(s)
  Y.Matsumura, S.Nakagawa, F.Maruyama, Y.Ogura, T.Hayashi, K.Kurokawa, T.Sawabe
- Organizer
  VIBRIO 2011
- Place of Presentation
  Santiago de Compostela-Spain
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノムからメタゲノムへ2011
- Author(s)
  黒川顕
- Organizer
  CBI/JSBi2011合同大会
- Place of Presentation
  神戸(招待講演)
- Year and Date
  2011-11-09
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] 生態系の理解に向けたゲノム情報の解析と活用2011
- Author(s)
  黒川顕
- Organizer
  農業環境技術研究所公開セミナー
- Place of Presentation
  つくば(招待講演)
- Year and Date
  2011-12-06
- Data Source
  KAKENHI-PROJECT-23310131
[Presentation] 大島拓核様体タンパク質H-NS結合位置の大腸菌株間比較解析2011
- Author(s)
  東光一, 戸邉亨, 鈴木穣, 菅野純夫, 石川周, 小笠原直毅, 黒川顕
- Organizer
  第5回日本ゲノム微生物学会年会
- Place of Presentation
  仙台
- Year and Date
  2011-03-16
- Data Source
  KAKENHI-PROJECT-20241045
[Presentation] 新型シーケンサーによるメタゲノム解析2011
- Author(s)
  黒川顕
- Organizer
  第63回日本生物工学会大会
- Place of Presentation
  京都(招待講演)
- Year and Date
  2011-09-27
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] 新型シーケンサーによるメタゲノム解析2011
- Author(s)
  黒川顕
- Organizer
  第63回日本生物工学会大会
- Place of Presentation
  東京(招待講演)
- Year and Date
  2011-09-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  千里ライフサイエンスセミナー
- Place of Presentation
  大阪(招待講演)
- Year and Date
  2010-10-22
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノム情報立脚型社会2010
- Author(s)
  黒川顕
- Organizer
  日本生体医工学会バイオメクフォーラム
- Place of Presentation
  大阪(招待講演)
- Year and Date
  2010-12-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  第12回日本進化学会
- Place of Presentation
  東京
- Year and Date
  2010-08-03
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  日本進化学会
- Place of Presentation
  東京(招待講演)
- Year and Date
  2010-08-03
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  千里ライフサイエンスセミナー
- Place of Presentation
  大阪
- Year and Date
  2010-10-22
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  日本ブドウ球菌研究会
- Place of Presentation
  東京(招待講演)
- Year and Date
  2010-07-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ゲノム情報立脚型社会2010
- Author(s)
  黒川顕
- Organizer
  日本生体医工学会バイオメクフォーラム
- Place of Presentation
  大阪
- Year and Date
  2010-12-11
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Fluctuation of gene pools of soil microbiota induced by contamination with aromatic hydrocarbons2010
- Author(s)
  H. Kato, 2 人, Y. Ohtsubo, 5 人, Y. Nagata, A. Fujiyama, K. Kurokawa and M. Tsuda
- Organizer
  13th International Society for Microbial Ecology Conference
- Place of Presentation
  Seattle, USA
- Data Source
  KAKENHI-PROJECT-22380176
[Presentation] ゲノムからメタゲノムへ2010
- Author(s)
  黒川顕
- Organizer
  第55回日本ブドウ球菌研究会
- Place of Presentation
  東京
- Year and Date
  2010-07-21
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Metagenomics analysis using Next-generation sequencing technology2009
- Author(s)
  K.Kurokawa
- Organizer
  第32回日本分子生物学会年会シンポジウム
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] メタゲノムインフォマティクス2009
- Author(s)
  黒川顕
- Organizer
  日本農芸化学会2009年大会シンポジウム
- Place of Presentation
  福岡
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] 次世代シークエンサーによるメタゲノム解析の可能性2008
- Author(s)
  黒川顕
- Organizer
  第288回CBI学会研究講演会
- Place of Presentation
  東京
- Year and Date
  2008-08-22
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Comparative metagenomics revealed commonly enriched gene sets in Human intestine.2008
- Author(s)
  Kurokawa, K., et al.
- Organizer
  The Biology of Genomes
- Place of Presentation
  CSHL アメリカニューヨーク
- Year and Date
  2008-05-05
- Data Source
  KAKENHI-PROJECT-20310116
[Presentation] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes2007
- Author(s)
  Kuwahara, T., Kurokawa, K., Itoh, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V. K., Srivastava, T.P., Taylor, T. D., Noguchi, H., Mori, H., Ogura, Y., Ehrlich, D. S., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T., Hattori, M
- Organizer
  The 7th International Workshop on Advanced Genomics
- Place of Presentation
  Tpkyo
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Metagenomics of microbial community in human intestine2007
- Author(s)
  Kurokawa, K., et. al.
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor Laboratory,NY,U.S.A
- Year and Date
  2007-05-07
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] メタゲノムインフォマティクス2007
- Author(s)
  黒川顕
- Organizer
  第2回放射線防御研究センターシンポジウム
- Place of Presentation
  千葉
- Year and Date
  2007-12-18
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Metagenomics of microbial community in human intestine2007
- Author(s)
  Kurokawa, K., et. al.
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor Laboratory, NY, U.S.A
- Year and Date
  2007-05-07
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] ヒト腸内フローラのメタゲノム解析2007
- Author(s)
  黒川顕
- Organizer
  日本乳酸菌学会
- Place of Presentation
  相模原
- Year and Date
  2007-07-05
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] ゲノム解析からメタゲノム解析へ2007
- Author(s)
  黒川顕
- Organizer
  第3回アグリバイオインフォマティクスシンポジウム
- Place of Presentation
  東京
- Year and Date
  2007-03-19
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] ヒト腸内フローラのメタゲノム解析2007
- Author(s)
  黒川顕
- Organizer
  新化学発展協会
- Place of Presentation
  東京
- Year and Date
  2007-10-23
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Metagenomics of microbial community in human intestine2007
- Author(s)
  Kurokawa, K., Oshima, K., Toh, H., Toyoda, A., Itoh, T., Noguchi, H., Yamakura, K., Itoh, T., Kuwahara, H., Morita, H., Takami, T., Hayashi, G., Hattori, M
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor Laboratory, NY, U.S.
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Metagenomics of microbial community in human intestine2006
- Author(s)
  Kurokawa K., et. al.
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor Laboratory,NY,U.S
- Year and Date
  2006-05-11
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] The mechanism of genomic diversification in Enterohemorrhagic E. coli O157 : H72006
- Author(s)
  Ooka, T, Ogura, Y., Nakayama, K., Kurokawa, K., Ohnishi, M., Terajima, J., Watanabe, H., Hayashi., T
- Organizer
  VTEC 2006 Melbourne(6th International Symposium on Shiga Toxin(Verocyt otoxin) -Producing Escherichia coli Infections)
- Place of Presentation
  October, Melbourne.
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Comparative genome analysis of O157 and non-O157 enterohemorrhagic Escherichia coli strains using the whole genome PCR scanning and the O157 oligoDNA microarray2006
- Author(s)
  Ogura, Y., Ooka, K., Kurokawa, K., Terajima, J., Nakayama, K., Watanabe, H., Tobe, T., Hayashi., T
- Organizer
  VTEC 2006 Melbourne(6th International Symposium on Shiga Toxin(Verocyt otoxin)-Producing Escherichia coli Infections)
- Place of Presentation
  Melbourne
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] Metagenomics of microbial community in human intestine2006
- Author(s)
  Kurokawa, K., Oshima, K., Toh, H., Toyoda, A., Itoh, T., Noguchi, H., Yamakura, K., Itoh, K., Kuwahara, T., Morita, H., Takami, H.,Hayashi', T., Hattori., T
- Organizer
  The Biology of Genomes
- Place of Presentation
  Cold Spring Harbor Laboratory, NY,U.S.
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18310132
[Presentation] 細菌群集構造可視化ツール「VITCOMIC2」
- Author(s)
  森宙史、丸山貴之、矢野雅大、山田拓司、黒川顕
- Organizer
  第9回日本ゲノム微生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2015-03-06 – 2015-03-08
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] VITCOMIC2 analysis system: visualization tool for taxonomic composition of microbial communities
- Author(s)
  Hiroshi Mori, Takayuki Maruyama, Masahiro Yano, Takuji Yamada, Ken Kurokawa
- Organizer
  International Symposium on Genome Science 2015 "Expanding Frontiers of Genome Science II"
- Place of Presentation
  Tokyo
- Year and Date
  2015-01-20 – 2015-01-21
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 微生物統合データベースの超高度化推進のための微生物の生息環境オントロジーと解析アプリケーションの開発
- Author(s)
  鈴木真也、山本希、森宙史、黒川顕
- Organizer
  第9回日本ゲノム微生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2015-03-06 – 2015-03-08
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 微生物統合データベース「MicrobeDB.jp」
- Author(s)
  森宙史、藤澤貴智、千葉啓、山本希、鈴木真也、菅原秀明、内山郁夫、中村保一、黒川顕
- Organizer
  環境微生物系学会合同大会2014
- Place of Presentation
  浜松
- Year and Date
  2014-10-21 – 2014-10-24
- Invited
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] Transplantation of soil microbiota: establishment process of microbial community in sterilized soil
- Author(s)
  Masataka Tsuda, Hiromi Kato, Hiroshi Mori, Fumito Maruyama, Atsushi Toyoda, Yoshitoshi Ogura, Tetsuya Hayashi, Asao Fujiyama, Ken Kurokawa
- Organizer
  International Symposium on Genome Science 2015 "Expanding Frontiers of Genome Science II"
- Place of Presentation
  Tokyo
- Year and Date
  2015-01-20 – 2015-01-21
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 移植された土壌微生物の定着過程とその安定性について
- Author(s)
  加藤広海、森宙史、丸山史人、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
- Organizer
  第9回日本ゲノム微生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2015-03-06 – 2015-03-08
- Data Source
  KAKENHI-PROJECT-25292206
[Presentation] 土壌における微生物コミュニティの形成過程について
- Author(s)
  加藤広海、森宙史、丸山史人、永山浩史、大坪嘉行、永田裕二、黒川顕、津田雅孝
- Organizer
  環境微生物系学会合同大会2014
- Place of Presentation
  浜松
- Year and Date
  2014-10-21 – 2014-10-24
- Data Source
  KAKENHI-PROJECT-25292206

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79. ANZAI Yuichiro

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80. OKADA Kiyotaka

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81. SAKAKI Yoshiyuki

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82. TAKAKU Fumimaro

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83. TOYOSHIMA Kumao

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84. NAKAMURA Keiko

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85. HOTTA Yoshiki

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86. YONEZAWA Akinori

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87. YOSHIKAWA Hiroshi

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88. YOSHIDA Mitsuaki

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89. INOKO Hidetoshi

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90. TODA Tatsushi

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91. INAZAWA Johji

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92. GOJOBORI Takashi

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93. URUSHIHARA Hideko

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94. TAKEDA Hiroyuki

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95. SHIROISHI Toshihiko

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96. ITOH Takashi

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97. SATOH Noriyuki

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98. MATSUDA Hideo

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99. GOTO Susumu

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100. NAKAMURA Toshinobu

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101. OMORI Soichi

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102. NAKAMURA Hitomi

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103. WATANABE Hirohumi

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104. HOSOMICHI Kazuyoshi

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106. ISHIKAWA Shu

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107. YOSHIKAWA Shinya

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108. SEGAWA Takahiro

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109. NISHIDA Yasutami

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110. 増田真二

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111. 新蔵礼子

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116. 増田建

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118. 後藤眞

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123. 佐藤直樹

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124. 兼崎友

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125. 戸邊享

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126. 遠藤秀紀

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127. 吉田邦夫

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128. 阿部芳郎

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Kurokawa Ken 黒川 顕

KUROKAWA Ken 黒川 顕

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専門書「冥王代生命学」の出版Principal InvestigatorOngoing

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先進ゲノム解析研究推進プラットフォームOngoing

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冥王代生命学の国際研究ネットワーク展開Principal InvestigatorOngoing

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Hadean BioscienceArea Organizer

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Hadean BiosciencePrincipal InvestigatorOngoing

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Comparative analysis of H-NS binding profiles of three E.coli strains suggests H-NS binding contributes to sequence diversification of E.coli genomePrincipal Investigator

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Kurokawa Ken 黒川顕

KUROKAWA Ken 黒川顕