SHIMAMURA Teppei 島村徹平

Researcher Number	00623943
Other IDs
Affiliation (Current)	2025: 東京科学大学, 総合研究院, 教授
Affiliation (based on the past Project Information) *help	2025: 東京科学大学, 総合研究院, 教授 2023 – 2024: 名古屋大学, 医学系研究科, 特任教授 2022 – 2024: 東京医科歯科大学, 難治疾患研究所, 教授 2019 – 2023: 名古屋大学, 医学系研究科, 教授 2014 – 2018: 名古屋大学, 医学系研究科, 特任准教授 … More 2017: 名古屋大学, 大学院医学系研究科, 特任准教授 2015: 名古屋大学, 医学(系)研究科(研究院), 准教授 2014 – 2015: 名古屋大学, 医学(系)研究科(研究院), 特任准教授 2013: 東京大学, 医科学研究所, 助教 Less
Review Section/Research Field	Principal Investigator Life / Health / Medical informatics / Biological Sciences / Transformative Research Areas, Section (III) / Complex systems / Basic Section 62010:Life, health and medical informatics-related / Medium-sized Section 62:Applied informatics and related fields Except Principal Investigator Tumor biology / Complex systems / Medium-sized Section 27:Chemical engineering and related fields / Basic Section 56010:Neurosurgery-related / Medium-sized Section 59:Sports sciences, physical education, health sciences, and related fields / Transformative Research Areas, Section (III) / Basic Section 50010:Tumor biology-related
Keywords	Principal Investigator 深層生成モデル / ベイズモデリング / マルチオミクス / システム生物学 / 空間トランスクリプトーム / 行列因子分解 / ネットワーク解析 / ベイズモデル / バイオインフォマティクス / 細胞ダイナミクス … More / 細胞間コミュニケーション / スパースモデリング / 臓器連関 / 一細胞解析 / マルチモーダル解析 / シングルセル解析 / 空間トランスクリプトーム解析 / シングルセルトランスクリプトーム解析 / イメージング高解像度化 / 一細胞オミクス / 相互作用ネットワーク / 時空間解析 / シングルセルオミクス / 因子分解 / 細胞運命決定 / トランスオミクス / テンソル因子分解 / 細胞間相互作用 / 深層学習 / 因子分解モデル / トピックモデル / マルチオミクス解析 / メタゲノム / 種間横断的解析 / モジュールネットワーク / 数理モデリング / 代謝 / フローサイトメトリー / メタボローム / 生体生命情報学 / 代謝シフト / 代謝ネットワーク / 転写制御 / 発現制御 / 遺伝子ネットワーク / エピゲノム / 高次クロマチン構造 / 次世代シークエンサー … More Except Principal Investigator バイオインフォマティクス / 1細胞 / 乳がん / がん幹細胞 / スーパーコンピュータ / 統計的モデリング / システム生物学 / がん / メタボロミクス / メタボローム / 質量分析 / 超臨界流体クロマトグラフィー / RNA / スプライシング / U1 snRNA / 髄芽腫 / プラセントカイン / エクサカイン / DOHaD / 運動 / 妊娠 / 胎盤 / 空間的オミックス解析 / エピゲノム / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / メタゲノム / 空間解析 / シングルセル解析 / オミックス解析 / ゲノム / 広報 / 若手支援 / 研究資源共有化 / 技術支援 / 細胞外マトリックス / １細胞 / ゲノム変異 / ニューロピリン / セマフォリン / IGF / トリプルネガティブ乳がん / スフェロイド / PDX / 転写制御 / 転写・代謝制御 / がん代謝 / 低pH / がん微小環境 / 人工知能 / PDXモデル / neuropilin / 遺伝子発現 / スフェロイド培養 / 幹細胞 / シングルセル / RNAシークエンス / semaphoring, neuropilin / breast cancer, / cancer stem cells / Single cell / シークエンス解析 / 遺伝子ネットワーク / 遺伝統計学 / ゲノム科学 Less

Development of a next-generation metabolome analysis system based on supercritical fluid separation analysis technologies
- Principal Investigator
  
  馬場健史
- Project Period (FY)
  2025 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 27:Chemical engineering and related fields
- Research Institution
  Kyushu University
胎盤による両親の運動情報の集約と次世代への臓器特異的な情報分散システムの解明
- Principal Investigator
  
  楠山譲二
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 59:Sports sciences, physical education, health sciences, and related fields
- Research Institution
  Institute of Science Tokyo
  Tokyo Medical and Dental University
領域研究「細胞外情報を統御するマルチモーダルECM」の統括と運営
- Principal Investigator
  
  藤原裕展
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Institute of Physical and Chemical Research
Modeling and simulation of extracellular information systems using next-generation deep learningPrincipal Investigator
- Principal Investigator
  
  島村徹平
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (A)
- Review Section
  
  Transformative Research Areas, Section (III)
- Research Institution
  Institute of Science Tokyo
  Tokyo Medical and Dental University
ベイズ深層学習による細胞ダイナミクスの新次元俯瞰Principal Investigator
- Principal Investigator
  
  島村徹平
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  Nagoya University
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
SHH型髄芽腫における異常RNAプロセシングの解明
- Principal Investigator
  
  鈴木啓道
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 56010:Neurosurgery-related
- Research Institution
  National Cancer Center Japan
Constructing a Disease-Related Microbiome Atlas for Advancing Understanding of Microbial FunctionalityPrincipal Investigator
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Challenging Research (Exploratory)
- Review Section
  
  Medium-sized Section 62:Applied informatics and related fields
- Research Institution
  Nagoya University
Development of Bayesian modeling approach for trans-omics data to explore inter-organ crosstalksPrincipal Investigator
- Principal Investigator
  
  島村徹平
- Project Period (FY)
  2020 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Development of Bayesian modeling approach to understand multicellular dynamicsPrincipal Investigator
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2020 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  Nagoya University
精神疾患の階層横断的理解を加速する数理モデリング技術の開発Principal Investigator
- Principal Investigator
  
  島村徹平
- Project Period (FY)
  2019 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Statistical modeling for cross-cutting understanding of life phenomenaPrincipal Investigator
- Principal Investigator
  
  島村徹平
- Project Period (FY)
  2018 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  Nagoya University
Integrative analysis of genetical mutations and heterogeneity based on stemness in breast cancer cells
- Principal Investigator
  
  Gotoh Noriko
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 50010:Tumor biology-related
- Research Institution
  Kanazawa University
Understanding mechanism of acidic pH induced tumor progression
- Principal Investigator
  
  Osawa Tsuyoshi
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Tumor biology
- Research Institution
  The University of Tokyo
Transcription regulatory network atlas for functional ncRNA searchPrincipal Investigator
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Nagoya University
Elucidation of breast cancer tissue diversity by integration analysis of minimum unit omics
- Principal Investigator
  
  Gotoh Noriko
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Tumor biology
- Research Institution
  Kanazawa University
Bayesian modeling for analyzing, integrating and understanding of intracellular metabolic shiftsPrincipal Investigator
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (A)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Nagoya University
Neodimensional exploration for cancer systems by supercomputing and innovative information technology
- Principal Investigator
  
  MIYANO SATORU
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo
Development of a statistical approach to decipher information from high-order chromatin structure and the epigenomePrincipal Investigator
- Principal Investigator
  
  Shimamura Teppei
- Project Period (FY)
  2013 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  Nagoya University
  The University of Tokyo
Development of Systems Cancer Research by Computation and Simulation
- Principal Investigator
  
  MIYANO SATORU
- Project Period (FY)
  2010 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo

[Book] 実験医学増刊 Vol.41 No.15、シングルセルマルチモーダル解析の最新技術―同一細胞・異なる細胞のモダリティ統合に向けてのアプローチ2023
- Author(s)
  島村徹平
- Total Pages
  244
- Publisher
  羊土社
- ISBN
  9784758104135
- Data Source
  KAKENHI-PLANNED-23H04938
[Book] 実験医学増刊 Vol.41 No.15、オミクス解析が明らかにする治療標的としてのがん代謝機構2023
- Author(s)
  三森功士、北川彰洋、島村徹平
- Total Pages
  222
- Publisher
  羊土社
- ISBN
  9784758104135
- Data Source
  KAKENHI-PLANNED-23H04938
[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022
- Author(s)
  小嶋泰弘、島村徹平
- Total Pages
  244
- Publisher
  羊土社
- ISBN
  9784758122610
- Data Source
  KAKENHI-PROJECT-20H04281
[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022
- Author(s)
  小嶋泰弘、島村徹平
- Total Pages
  244
- Publisher
  羊土社
- ISBN
  9784758122610
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022
- Author(s)
  小嶋泰弘、島村徹平
- Total Pages
  244
- Publisher
  羊土社
- ISBN
  9784758122610
- Data Source
  KAKENHI-PROJECT-20K21832
[Journal Article] Single-cell colocalization analysis using a deep generative model2024
- Author(s)
  Kojima Yasuhiro、Mii Shinji、Hayashi Shuto、Hirose Haruka、Ishikawa Masato、Akiyama Masashi、Enomoto Atsushi、Shimamura Teppei
- Journal Title
  
  Cell Systems
  
  Volume: 15 Issue: 2 Pages: 180-192
- DOI
  10.1016/j.cels.2024.01.007
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23K16991, KAKENHI-PROJECT-22K07000, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925
[Journal Article] Spatial and single-cell colocalisation analysis reveals MDK-mediated immunosuppressive environment with regulatory T cells in colorectal carcinogenesis2024
- Author(s)
  Hashimoto Masahiro、Kojima Yasuhiro et. al.
- Journal Title
  
  eBioMedicine
  
  Volume: 103 Pages: 105102-105102
- DOI
  10.1016/j.ebiom.2024.105102
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K16991, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08215, KAKENHI-PROJECT-21K07179, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-23K24941
[Journal Article] Topological data analysis of protein structure and inter/intra-molecular interaction changes attributable to amino acid mutations2023
- Author(s)
  Koseki Jun、Hayashi Shuto、Kojima Yasuhiro、Hirose Haruka、Shimamura Teppei
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 21 Pages: 2950-2959
- DOI
  10.1016/j.csbj.2023.05.009
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K17993, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24941
[Journal Article] Metastases and treatment-resistant lineages in patient-derived cancer cells of colorectal cancer2023
- Author(s)
  Fujino Shiki、Miyoshi Norikatsu、Ito Aya、Hayashi Rie、Yasui Masayoshi、Matsuda Chu、Ohue Masayuki、Horie Masafumi、Yachida Shinichi、Koseki Jun、Shimamura Teppei、Hata Tsuyoshi、Ogino Takayuki、Takahashi Hidekazu、Uemura Mamoru、Mizushima Tsunekazu、Doki Yuichiro、Eguchi Hidetoshi
- Journal Title
  
  Communications Biology
  
  Volume: 6 Issue: 1 Pages: 1191-1191
- DOI
  10.1038/s42003-023-05562-y
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K08709, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-23K24941
[Journal Article] 特集未病の科学 Ⅰ.未病の数理研究変分自己符号化器を用いた細胞状態遷移のゆらぎ解析と未病研究への応用2023
- Author(s)
  島村徹平、小嶋泰弘
- Journal Title
  
  生体の科学
  
  Volume: 74 Issue: 2 Pages: 118-122
- DOI
  10.11477/mf.2425201655
- ISSN
  0370-9531, 1883-5503
- Year and Date
  2023-04-15
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023
- Author(s)
  Kitagawa A, Osawa T,Noda M,Kobayashi Y, Aki S,Nakano Y,Saito T,Shimizu D,Komatsu H,Sugaya M,Takahashi J,...Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: - Issue: 12 Pages: 22068-22068
- DOI
  10.1038/s41416-023-02256-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08826, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K07260, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-22K07774, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K08745, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24164
[Journal Article] FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters2023
- Author(s)
  Li Mengjiao、Nishimura Tatsunori、Takeuchi Yasuto、Hongu Tsunaki、Wang Yuming、Hirose Haruka、Nomura Seitaro、Suzuki Yutaka、Okamoto Koji、Gotoh Noriko (et al. 22)
- Journal Title
  
  Journal of Clinical Investigation
  
  Volume: 133 Issue: 22 Pages: 1-19
- DOI
  10.1172/jci166666
- URL
  https://pure.teikyo.jp/en/publications/d71d747a-da13-460e-9ab3-392d35ed0efc
- Language
  English
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18237, KAKENHI-PROJECT-21K15501, KAKENHI-PROJECT-22K07037, KAKENHI-PROJECT-23K06610, KAKENHI-PROJECT-23K06630, KAKENHI-PROJECT-22K20818, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04923, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H05045, KAKENHI-PROJECT-21H02761, KAKENHI-PROJECT-21H03081
[Journal Article] A pyrenoid-localized protein SAGA1 is necessary for Ca2+-binding protein CAS-dependent expression of nuclear genes encoding inorganic carbon transporters in Chlamydomonas reinhardtii2023
- Author(s)
  Shimamura Daisuke、Yamano Takashi、Niikawa Yuki、Hu Donghui、Fukuzawa Hideya
- Journal Title
  
  Photosynthesis Research
  
  Volume: － Issue: 2 Pages: 181-192
- DOI
  10.1007/s11120-022-00996-7
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H03073, KAKENHI-PROJECT-21K19145, KAKENHI-PUBLICLY-21H05660, KAKENHI-PROJECT-22H04925
[Journal Article] Hypoxia activates SREBP2 through Golgi disassembly in bone marrow-derived monocytes for enhanced tumor growth2023
- Author(s)
  Nakahara R, Aki S, Sugaya M, Hirose H, Kato M, Maeda K, Sakamoto DM, Kojima Y, Nishida M, Ando R, Muramatsu M, Pan M, Tsuchida R, Matsumura Y, Yanai H, Takano H, Yao R, Sando S, Shibuya M, Sakai J, Kodama T, Kidoya H, Shimamura T, Osawa T.
- Journal Title
  
  The EMBO Journal
  
  Volume: 42 Issue: 22 Pages: 15252-15252
- DOI
  10.15252/embj.2023114032
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K18411, KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-23KJ0581, KAKENHI-PROJECT-22KJ0927, KAKENHI-PUBLICLY-23H04772, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H04826, KAKENHI-PROJECT-23K24149
[Journal Article] Plucked scalp hair follicle samples are useful RNA sources for mRNA analysis of most genodermatosis-associated genes2023
- Author(s)
  Takeuchi So、Takeichi Takuya、Muro Yoshinao、Shimamura Teppei、Akiyama Masashi
- Journal Title
  
  Journal of Dermatological Science
  
  Volume: 111 Issue: 2 Pages: 68-70
- DOI
  10.1016/j.jdermsci.2023.06.004
- Data Source
  KAKENHI-PLANNED-23H04938
[Journal Article] Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer2023
- Author(s)
  Ozato Y, Mimori K(28番目）,他26名
- Journal Title
  
  Cell Reports
  
  Volume: 42 Issue: 1 Pages: 111929-111929
- DOI
  10.1016/j.celrep.2022.111929
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08908, KAKENHI-PROJECT-22K19464, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K07659, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179
[Journal Article] Acidic Extracellular pH Drives Accumulation of N1-Acetylspermidine and Recruitment of Pro-Tumor Neutrophils2023
- Author(s)
  Kato M, Maeda K, Nakahara R, Hirose H, Kondo A, Aki S, Sugaya M, Hibino S, Nishida M, Hasegawa M, Morita H, Ando R, Tsuchida R, Yoshida M, Kodama T, Yanai H, Shimamura T and Osawa T
- Journal Title
  
  PNAS Nexus
  
  Volume: 10 Issue: 10 Pages: 1093-1093
- DOI
  10.1093/pnasnexus/pgad306
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-23KJ0581, KAKENHI-PROJECT-22KJ0927, KAKENHI-PUBLICLY-23H04772, KAKENHI-PLANNED-23H04882, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H05473, KAKENHI-PROJECT-23K24149
[Journal Article] Increased flexibility of the SARS-CoV-2 RNA-binding site causes resistance to remdesivir2023
- Author(s)
  Torii Shiho、Kim Kwang Su、Koseki Jun、Suzuki Rigel、Iwanami Shoya、Fujita Yasuhisa、Jeong Yong Dam、Ito Jumpei、Asakura Hiroyuki、Nagashima Mami、Sadamasu Kenji、Yoshimura Kazuhisa、Sato Kei、Matsuura Yoshiharu、Shimamura Teppei、Iwami Shingo、Fukuhara Takasuke、The Genotype to Phenotype Japan (G2P-Japan) Consortium
- Journal Title
  
  PLOS Pathogens
  
  Volume: 19 Issue: 3 Pages: e1011231-e1011231
- DOI
  10.1371/journal.ppat.1011231
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19829, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K24941, KAKENHI-PUBLICLY-22H05215
[Journal Article] UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data2023
- Author(s)
  Abe Ko、Shimamura Teppei
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 24 Issue: 5
- DOI
  10.1093/bib/bbad253
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925
[Journal Article] Metabolic remodeling of pyrimidine synthesis pathway and serine synthesis pathway in human glioblastoma2022
- Author(s)
  Nakamizo Akira、Miyamatsu Yuichiro、Hirose Haruka、Amano Toshiyuki、Matsuo Satoshi、Fujiwara Minako、Shimamura Teppei、Yoshimoto Koji
- Journal Title
  
  Scientific Reports
  
  Volume: 12 Issue: 1 Pages: 16277-16277
- DOI
  10.1038/s41598-022-20613-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K09541, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839
[Journal Article] Bayesian statistical method for detecting structural and topological diversity in polymorphic proteins2022
- Author(s)
  Hayashi Shuto、Koseki Jun、Shimamura Teppei
- Journal Title
  
  Computational and Structural Biotechnology Journal
  
  Volume: 20 Pages: 6519-6525
- DOI
  10.1016/j.csbj.2022.11.038
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K17993, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K24941
[Journal Article] UVB-Induced Skin Autoinflammation Due to Nlrp1b Mutation and Its Inhibition by Anti-IL-1β Antibody2022
- Author(s)
  Murase Yuya、Takeichi Takuya、Koseki Jun、Miyasaka Yuki、Muro Yoshinao、Ohno Tamio、Shimamura Teppei、Akiyama Masashi
- Journal Title
  
  Frontiers in Immunology
  
  Volume: 13 Pages: 876390-876390
- DOI
  10.3389/fimmu.2022.876390
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-18K16058, KAKENHI-PUBLICLY-22H04839
[Journal Article] Detecting time-evolving phenotypic components of adverse reactions against BNT162b2 SARS-CoV-2 vaccine via non-negative tensor factorization2022
- Author(s)
  Ikeda Kei、Nakada Taka-Aki、Kageyama Takahiro、Tanaka Shigeru、Yoshida Naoki、Ishikawa Tetsuo、Goshima Yuki、Otaki Natsuko、Iwami Shingo、Shimamura Teppei、Taniguchi Toshibumi、Igari Hidetoshi、Hanaoka Hideki、Yokote Koutaro、Tsuyuzaki Koki、Nakajima Hiroshi、Kawakami Eiryo
- Journal Title
  
  iScience
  
  Volume: 25 Issue: 10 Pages: 105237-105237
- DOI
  10.1016/j.isci.2022.105237
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21837, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-19K20406, KAKENHI-PUBLICLY-22H04839
[Journal Article] Exome sequencing of Japanese schizophrenia multiplex families supports the involvement of calcium ion channels2022
- Author(s)
  Toyama Miho、Takasaki Yuto、Branko Aleksic、Kimura Hiroki、Kato Hidekazu、Nawa Yoshihiro、Kushima Itaru、Ishizuka Kanako、Shimamura Teppei、Ogi Tomoo、Ozaki Norio
- Journal Title
  
  PLOS ONE
  
  Volume: 17(5) Issue: 5 Pages: e0268321-e0268321
- DOI
  10.1371/journal.pone.0268321
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20K20602, KAKENHI-PROJECT-21H04815, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-21H02848, KAKENHI-PUBLICLY-22H04839
[Journal Article] An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis2022
- Author(s)
  Takahashi K, Abe K, Kubota SI, Fukatsu N, Morishita Y, Yoshimatsu Y, Satoshi Hirakawa, Yoshiaki Kubota, Tetsuro Watabe, Shogo Ehata, Hiroki R. Ueda, Teppei Shimamura, Kohei Miyazono
- Journal Title
  
  Nature Communiactions
  
  Volume: 13 Issue: 1 Pages: 5239-5239
- DOI
  10.1038/s41467-022-32848-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07094, KAKENHI-PROJECT-22K15435, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-18H05270, KAKENHI-PROJECT-20H03851, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PLANNED-17H06326, KAKENHI-ORGANIZER-19H05794, KAKENHI-PROJECT-20H00513
[Journal Article] A bifurcation concept for B-lymphoid/plasmacytoid dendritic cells with largely fluctuating transcriptome dynamics.2022
- Author(s)
  Nagaharu K, Kojima Y, Hirose H, Minoura K, Hinohara K, Minami H, Kageyama Y, Sugimoto Y, Masuya M, Nii S, Seki M, Suzuki Y, Tawara I, Shimamura T, Katayama N, Nishikawa H, Ohishi K.
- Journal Title
  
  Cell Rep.
  
  Volume: 40 Issue: 9 Pages: 111260-111260
- DOI
  10.1016/j.celrep.2022.111260
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K10838, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00455, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839
[Journal Article] Metabolome and transcriptome analysis on muscle of sporadic inclusion body myositis.2022
- Author(s)
  Murakami, A., Noda, S., Kazuta, T., Hirano, S., Kimura, S., Nakanishi, H., Matsuo, K., Tsujikawa, K., Iida, M., Koike, H., Sakamoto, K., Hara, Y., Kuru, S., Kadomatsu, K., Shimamura, T., Ogi, T., Katsuno, M.
- Journal Title
  
  Ann Clin Transl Neurol.
  
  Volume: 9 Issue: 10 Pages: 1602-1615
- DOI
  10.1002/acn3.51657
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K18251, KAKENHI-PROJECT-22K15705, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-21K20686, KAKENHI-PUBLICLY-22H04839
[Journal Article] Smoking enhances the expression of angiotensin‐converting enzyme 2 involved in the efficiency of severe acute respiratory syndrome coronavirus 2 infection2022
- Author(s)
  Suzuki Rigel、Ono Yuki、Noshita Koji、Kim Kwang Su、Ito Hayato、Morioka Yuhei、Tamura Tomokazu、Okuzaki Daisuke、Tagawa Tetsuzo、Takenaka Tomoyoshi、Yoshizumi Tomoharu、Shimamura Teppei、Iwami Shingo、Fukuhara Takasuke
- Journal Title
  
  Microbiology and Immunology
  
  Volume: 67 Issue: 1 Pages: 22-31
- DOI
  10.1111/1348-0421.13034
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-21H02736, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K27671
[Journal Article] A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data2021
- Author(s)
  Minoura Kodai、Abe Ko、Nam Hyunha、Nishikawa Hiroyoshi、Shimamura Teppei
- Journal Title
  
  Cell Reports Methods
  
  Volume: 1(5) Issue: 5 Pages: 100071-100071
- DOI
  10.1016/j.crmeth.2021.100071
- Data Source
  KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832
[Journal Article] Depletion of central memory CD8+ T cells might impede the antitumor therapeutic effect of Mogamulizumab2021
- Author(s)
  Maeda Yuka、Wada Hisashi、Sugiyama Daisuke、Saito Takuro、Irie Takuma、Itahashi Kota、Minoura Kodai、Suzuki Susumu、Kojima Takashi、Kakimi Kazuhiro、Nakajima Jun、Funakoshi Takeru、Iida Shinsuke、Oka Mikio、Shimamura Teppei、Doi Toshihiko、Doki Yuichiro、Nakayama Eiichi、Ueda Ryuzo、Nishikawa Hiroyoshi
- Journal Title
  
  Nature Communications
  
  Volume: 12(1) Issue: 1 Pages: 7280-7280
- DOI
  10.1038/s41467-021-27574-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-17H06162, KAKENHI-PROJECT-19H03729, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-21K07112, KAKENHI-PROJECT-20K21832
[Journal Article] Hierarchical non-negative matrix factorization using clinical information for microbial communities2021
- Author(s)
  Abe Ko、Hirayama Masaaki、Ohno Kinji、Shimamura Teppei
- Journal Title
  
  BMC Genomics
  
  Volume: 22 Issue: 1 Pages: 104-104
- DOI
  10.1186/s12864-021-07401-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-20H04281
[Journal Article] Integrated multiomics analysis of hepatoblastoma unravels its heterogeneity and provides novel druggable targets2020
- Author(s)
  Sekiguchi M, Seki M, Kawai T, Yoshida K, Yoshida M, Isobe T, Hoshino N, Shirai R, Tanaka M, Souzaki R, Watanabe K, Arakawa Y, Nannya Y, Suzuki H, Fujii Y, Kataoka K, Shiraishi Y, Chiba K, Tanaka H, Shimamura T, Sato Y, Sato-Otsubo A, Kimura S, Kubota Y, Hiwatari M, et al
- Journal Title
  
  NPJ Precis Oncol.
  
  Volume: 4 Issue: 1 Pages: 20-20
- DOI
  10.1038/s41698-020-0125-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K07693, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20H00528
[Journal Article] CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data2020
- Author(s)
  Minoura K*, Abe K*, Maeda Y, Nishikawa H, Shimamura T§
- Journal Title
  
  Bioinformatics
  
  Volume: - Issue: 11 Pages: 873-873
- DOI
  10.1093/bioinformatics/btaa873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-17K15738, KAKENHI-PROJECT-17H06162, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K21832
[Journal Article] Meta‐Analysis of Gut Dysbiosis in Parkinson's Disease2020
- Author(s)
  Nishiwaki Hiroshi、Ito Mikako、Ishida Tomohiro、Hamaguchi Tomonari、Maeda Tetsuya、Kashihara Kenichi、Tsuboi Yoshio、Ueyama Jun、Shimamura Teppei、Mori Hiroshi、Kurokawa Ken、Katsuno Masahisa、Hirayama Masaaki、Ohno Kinji
- Journal Title
  
  Movement Disorders
  
  Volume: 35 Issue: 9 Pages: 1626-1635
- DOI
  10.1002/mds.28119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08001, KAKENHI-PROJECT-20K06925, KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K07094
[Journal Article] ARHGAP10, which encodes Rho GTPase-activating protein 10, is a novel gene for schizophrenia risk2020
- Author(s)
  Mariko Sekiguchi, Akiko Kodama,... Emiko Shishido,... Daisuke Mori, Norio Ozaki
- Journal Title
  
  Translational psychiatry
  
  Volume: 10 Issue: 1 Pages: 1-15
- DOI
  10.1038/s41398-020-00917-z
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K08072, KAKENHI-PROJECT-20K07082, KAKENHI-PROJECT-20K07965, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-18K14816, KAKENHI-PROJECT-20K16488, KAKENHI-PROJECT-20K16625, KAKENHI-PROJECT-19H05467, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-18H04040, KAKENHI-PROJECT-20H03611, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K07383, KAKENHI-PROJECT-18K15512, KAKENHI-PROJECT-19K16111, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-17H04252, KAKENHI-PROJECT-18KT0022
[Journal Article] Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells2020
- Author(s)
  Higashijima Y, Matsui Y, Shimamura T, Nakaki R, Nagai N, Tsutsumi S, Abe Y, Link VM, Osaka M, Yoshida M, Watanabe R, Tanaka T, Taguchi A, Miura M, Ruan X, Li G, Inoue T, Nangaku M, Kimura H, Furukawa T, Aburatani H, Wada Y, Ruan Y, Glass CK, Kanki Y
- Journal Title
  
  The EMBO Journal
  
  Volume: 39 Issue: 7 Pages: 1-1
- DOI
  10.15252/embj.2019103949
- NAID
  120006902140
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K23850, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04899, KAKENHI-PLANNED-18H05527, KAKENHI-PUBLICLY-19H05210, KAKENHI-PLANNED-19H05744, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-17J07088, KAKENHI-PROJECT-17K15991, KAKENHI-PROJECT-19K21297, KAKENHI-PROJECT-20K09448, KAKENHI-PROJECT-20K21832, KAKENHI-PROJECT-20K17242, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-18H02803, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K22679, KAKENHI-ORGANIZER-19H05739, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-20H03432
[Journal Article] Model-based clustering for flow and mass cytometry data with clinical information2020
- Author(s)
  Abe K, Minoura K, Maeda Y, Nishikawa H, Shimamura T§
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 21(Suppl 13) Issue: S13 Pages: 393-393
- DOI
  10.1186/s12859-020-03671-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K15738, KAKENHI-PROJECT-17H06162
[Journal Article] EXOSC9 depletion attenuates P-body formation, stress resistance, and tumorigenicity of cancer cells.2020
- Author(s)
  Yoshino S, Matsui Y, Fukui Y, Seki M, Yamaguchi K, Kanamori A, Saitoh Y, Shimamura T, Suzuki Y, Furukawa Y, Kaneko S, Seiki M, Murakami Y, Inoue JI, Sakamoto T.
- Journal Title
  
  Sci Rep
  
  Volume: 10 Issue: 1 Pages: 9275-9275
- DOI
  10.1038/s41598-020-66455-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07659, KAKENHI-PROJECT-20K07563, KAKENHI-PROJECT-20K21832, KAKENHI-INTERNATIONAL-16K21739, KAKENHI-ORGANIZER-16H06573, KAKENHI-PLANNED-16H06575, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-18H03207
[Journal Article] Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson’s Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder2020
- Author(s)
  Nishiwaki Hiroshi、Hamaguchi Tomonari、Ito Mikako、Ishida Tomohiro、Maeda Tetsuya、Kashihara Kenichi、Tsuboi Yoshio、Ueyama Jun、Shimamura Teppei、Mori Hiroshi、Kurokawa Ken、Katsuno Masahisa、Hirayama Masaaki、Ohno Kinji
- Journal Title
  
  mSystems
  
  Volume: 5 Issue: 6
- DOI
  10.1128/msystems.00797-20
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08001, KAKENHI-PROJECT-20K06925, KAKENHI-PROJECT-19K22802, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-19H05210, KAKENHI-PUBLICLY-20H04841, KAKENHI-PROJECT-20H03561, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-17K07094
[Journal Article] Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas2019
- Author(s)
  Ohka Fumiharu、Shinjo Keiko、Deguchi Shoichi、Matsui Yusuke et al.
- Journal Title
  
  Cancer Research
  
  Volume: 79 Issue: 19 Pages: 4814-4827
- DOI
  10.1158/0008-5472.can-19-1272
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K18151, KAKENHI-PROJECT-19KK0228, KAKENHI-PLANNED-17H06356, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04899, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-17H03582, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-17K07247
[Journal Article] Phosphoethanolamine Accumulation Protects Cancer Cells under Glutamine Starvation through Downregulation of PCYT22019
- Author(s)
  Osawa T, Shimamura T, Saito K, Hasegawa Y, Ishii N, Nishida M, Ando R, Kondo A, Anwar M, Kato K, Endo K, Yamano S, Kanki Y, Matsumura Y, Minami T, Tanaka T, Anai M, Wada Y, Wanibuchi H, Hayashi M, Hamada A, Yoshida M, Yachida S, Nakao M, Sakai J, Aburatani H, Shibuya M, Hanada K, Miyano S, Soga T, Kodama T
- Journal Title
  
  Cell Rep.
  
  Volume: 29(1) Issue: 1 Pages: 89-103
- DOI
  10.1016/j.celrep.2019.08.087
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04688, KAKENHI-PUBLICLY-18H04797, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04897, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-16H06390, KAKENHI-PROJECT-19H01031, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-19H03496, KAKENHI-PROJECT-18K16132
[Journal Article] Divergent lncRNA MYMLR regulates MYC by eliciting DNA looping and promoter-enhancer interaction2019
- Author(s)
  Kajino T, Shimamura T, Gong S, Yanagisawa K, Ida L, Nakatochi M, Griesing S, Shimada Y, Kano K, Suzuki M, Miyano S
- Journal Title
  
  EMBO J
  
  Volume: 38 Issue: 17 Pages: 1-13
- DOI
  10.15252/embj.201798441
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K08174, KAKENHI-PLANNED-15H05910, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-18H02698
[Journal Article] ENIGMA: An Enterotype-Like Unigram Mixture Model for Microbial Association Analysis.2019
- Author(s)
  Abe K, Hirayama H, Ohno K, Shimamura T.
- Journal Title
  
  BMC Genomics
  
  Volume: 20(Suppl 2) Issue: S2 Pages: 191-191
- DOI
  10.1186/s12864-019-5476-9
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325, KAKENHI-PUBLICLY-19H05210
[Journal Article] Replication stress triggers microsatellite destabilization and hypermutation leading to clonal expansion in vitro2019
- Author(s)
  Matsuno Yusuke、Atsumi Yuko、Shimizu Atsuhiro、Katayama Kotoe、Fujimori Haruka、Hyodo Mai、Minakawa Yusuke、Nakatsu Yoshimichi、Kaneko Syuzo、Hamamoto Ryuji、Shimamura Teppei、Miyano Satoru、Tsuzuki Teruhisa、Hanaoka Fumio、Yoshioka Ken-ichi
- Journal Title
  
  Nature Communications
  
  Volume: 10 Issue: 1 Pages: 3925-3925
- DOI
  10.1038/s41467-019-11760-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K11542, KAKENHI-PROJECT-19K12215, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04908, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-19H03429
[Journal Article] Model-based cell clustering and population tracking for time-series flow cytometry data.2019
- Author(s)
  Minoura K, Abe K, Maeda Y, Nishikawa H, Shimamura T.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 20(Suppl 23) Issue: S23 Pages: 633-633
- DOI
  10.1186/s12859-019-3294-3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-17H06162
[Journal Article] Tumor subclonal progression model for cancer hallmark acquisition2019
- Author(s)
  Matsu Y, Miyano S, Shimamura T
- Journal Title
  
  LNBI
  
  Volume: 10834 Pages: 115-123
- DOI
  10.1007/978-3-030-14160-8_12
- ISBN
  9783030141592, 9783030141608
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04899, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-16K16146, KAKENHI-PROJECT-18K18151
[Journal Article] A Network of Networks Approach for Modeling Interconnected Brain Tissue-Specific Networks.2019
- Author(s)
  Kawakubo H, Matsui Y, Kushima I, Ozaki N, Shimamura T.
- Journal Title
  
  Bioinformatics
  
  Volume: - Issue: 17 Pages: 1-10
- DOI
  10.1093/bioinformatics/btz032
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-18H04899, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-18K18151, KAKENHI-PUBLICLY-19H05210
[Journal Article] Distinct methylation levels of mature microRNAs in gastrointestinal cancers2019
- Author(s)
  Konno Masamitsu、Koseki Jun、Asai Ayumu、Yamagata Akira、Shimamura Teppei、Motooka Daisuke、Okuzaki Daisuke、Kawamoto Koichi、Mizushima Tsunekazu、Eguchi Hidetoshi、Takiguchi Shuji、Satoh Taroh、Mimori Koshi、Ochiya Takahiro、Doki Yuichiro、Ofusa Ken、Mori Masaki、Ishii Hideshi
- Journal Title
  
  Nature Communications
  
  Volume: 10 Issue: 1 Pages: 3888-3888
- DOI
  10.1038/s41467-019-11826-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K08617, KAKENHI-PROJECT-18K08704, KAKENHI-PROJECT-19K07688, KAKENHI-PROJECT-19K09172, KAKENHI-PROJECT-19K22658, KAKENHI-PROJECT-18KK0251, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-17H04282, KAKENHI-PROJECT-19H03715, KAKENHI-PROJECT-18K16355, KAKENHI-PROJECT-18K16356, KAKENHI-PROJECT-16H06276, KAKENHI-PROJECT-16H06279
[Journal Article] GIMLET: Identifying biological modulators in context-specific gene regulation using local energy statistics2019
- Author(s)
  Shimamura T, Matsui Y, Kajino T, Ito S, Takahashi T, Miyano S
- Journal Title
  
  LNBI
  
  Volume: 10834 Pages: 124-137
- DOI
  10.1007/978-3-030-14160-8_13
- ISBN
  9783030141592, 9783030141608
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04899, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-16K16146, KAKENHI-PROJECT-18K18151
[Journal Article] Regnase-1-mediated post-transcriptional regulation is essential for hematopoietic stem and progenitor cell homeostasis2019
- Author(s)
  Kidoya H, Muramatsu F, Shimamura T, Jia W, Satoh T, Hayashi Y, Naito H, Kunisaki Y, Arai F, Seki M, Suzuki Y, Osawa T, Akira S., Takakura N.
- Journal Title
  
  Nature Commun,
  
  Volume: 10 Issue: 1 Pages: 1072-1072
- DOI
  10.1038/s41467-019-09028-w
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04797, KAKENHI-PUBLICLY-18H04897, KAKENHI-PROJECT-16H02470, KAKENHI-PROJECT-17H04208, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-26710005, KAKENHI-PROJECT-19K22553, KAKENHI-PROJECT-19K16742, KAKENHI-PUBLICLY-18H04798, KAKENHI-PUBLICLY-19H05210, KAKENHI-PROJECT-18H02841, KAKENHI-PROJECT-19H03496
[Journal Article] GIMLET: Identifying biological modulators in context-specific gene regulation using local energy statistics.2018
- Author(s)
  Shimamura T, Matsui Y, Kajino T, Ito S, Takahashi T, Miyano S.
- Journal Title
  
  Lecture Notes in Bioinformatics
  
  Volume: 10834 Pages: 115-123
- DOI
  10.1101/349928
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325
[Journal Article] Tumor subclonal progression model for cancer hallmark acquisition.2018
- Author(s)
  Matsui Y, Miyano S, Shimamura T.
- Journal Title
  
  Lecture Notes in Bioinformatics
  
  Volume: 10834 Pages: 124-137
- DOI
  10.1101/149252
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325
[Journal Article] hibition controls aggressive prostate tumors deficient in Y-linked histone demethylase KDM5D.2018
- Author(s)
  Komura K、Yoshikawa Y, Shimamura T, Chakraborty G, Gerke TA, Hinohara K, Chadalavada K, Jeong SH, Armenia J, Du SY, Mazzu YZ, Taniguchi K, Ibuki N, Meyer CA, Nanjangud GJ, Inamoto T, Lee GM, Mucci LA, Azuma H, Sweeney CJ, Kantoff PW.
- Journal Title
  
  Journal of Clinical Investigation
  
  Volume: 128(7) Issue: 7 Pages: 2979-95
- DOI
  10.1172/jci96769
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K11033, KAKENHI-PROJECT-18K16716, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-17K16821
[Journal Article] Integrated Molecular Characterization of the Lethal Pediatric Cancer Pancreatoblastoma2018
- Author(s)
  Isobe T, Seki M, Yoshida K, Sekiguchi M, Shiozawa Y, Shiraishi Y,..., Kataoka K, Sato Y, Kawai T, Chiba K, Tanaka H, Shimamura T, Kato M, Iguchi A, Hama A, Taguchi T, Akiyama M, Fujimura J, Inoue A, Ito T, Deguchi T, Kiyotani C, Iehara T, Hosoi H, Oka A, Sanada M, Tanaka Y, Hata K, Miyano S, Ogawa S, Takita J
- Journal Title
  
  Cancer Res
  
  Volume: 78(4) Issue: 4 Pages: 865-876
- DOI
  10.1158/0008-5472.can-17-2581
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks2018
- Author(s)
  Park H, Shimamura T, Imoto S, Miyano S
- Journal Title
  
  J Comput Biol
  
  Volume: 25(2) Issue: 2 Pages: 130-145
- DOI
  10.1089/cmb.2017.0120
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer2018
- Author(s)
  Saito T, Niida A, Uchi R, Hirata H, Kodama M, Okimoto T, Murakami K, Suzuki Y, Ogawa S, Miyano S, Mimori K, et al.
- Journal Title
  
  Nature Communications
  
  Volume: 9 Issue: 1 Pages: 2884-2884
- DOI
  10.1038/s41467-018-05226-0
- NAID
  120006551763
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K08695, KAKENHI-PROJECT-18K07946, KAKENHI-PROJECT-18K08009, KAKENHI-PROJECT-18K08649, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-15H05707
[Journal Article] A latent allocation model for the analysis of microbial composition and disease2018
- Author(s)
  Abe K, Hirayama H, Ohno K, Shimamura T.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 19(Suppl 19) Issue: S19 Pages: 519-519
- DOI
  10.1186/s12859-018-2530-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325
[Journal Article] Comparative Analyses of Copy-Number Variation in Autism Spectrum Disorder and Schizophrenia Reveal Etiological Overlap and Biological Insights.2018
- Author(s)
  Kushima I, (27名中略）, Hashimoto R,(80名中29番目) , et al.
- Journal Title
  
  Cell Rep
  
  Volume: 24(11) Issue: 11 Pages: 2838-2856
- DOI
  10.1016/j.celrep.2018.08.022
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18KT0022, KAKENHI-PROJECT-16K10248, KAKENHI-PROJECT-17K10295, KAKENHI-PROJECT-18K07590, KAKENHI-PROJECT-16K19763, KAKENHI-PROJECT-17K16403, KAKENHI-PROJECT-15KK0339, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-17H00883, KAKENHI-PROJECT-16H05375, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-17H05090, KAKENHI-PROJECT-16K08421, KAKENHI-PROJECT-16K09965, KAKENHI-PROJECT-16K15554, KAKENHI-PROJECT-16K19759, KAKENHI-PROJECT-16K21046, KAKENHI-PROJECT-18K15512, KAKENHI-PROJECT-26293261, KAKENHI-PROJECT-16H05380
[Journal Article] Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD822018
- Author(s)
  Takeda Masafumi、Kanki Yasuharu、Masumoto Hidetoshi、Funakoshi Shunsuke、Hatani Takeshi、Fukushima Hiroyuki、Izumi-Taguchi Akashi、Matsui Yusuke、Shimamura Teppei、Yoshida Yoshinori、Yamashita Jun K.
- Journal Title
  
  Cell Reports
  
  Volume: 22 Issue: 2 Pages: 546-556
- DOI
  10.1016/j.celrep.2017.12.057
- NAID
  120006460050
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K15438, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H04819, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K19402, KAKENHI-PROJECT-15KK0251, KAKENHI-PROJECT-18K18151, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-16K16146
[Journal Article] Prognostic relevance of genetic alterations in diffuse lower-grade gliomas2017
- Author(s)
  Aoki Kosuke、Nakamura Hideo、Suzuki Hiromichi et al.
- Journal Title
  
  Neuro-Oncology
  
  Volume: 20 Issue: 1 Pages: 66-77
- DOI
  10.1093/neuonc/nox132
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K10761, KAKENHI-PROJECT-17K16643, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H00758, KAKENHI-PROJECT-16H05436, KAKENHI-PROJECT-15K10337, KAKENHI-PROJECT-17K10862, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05325
[Journal Article] ER Stress Signaling Promotes the Survival of Cancer “Persister Cells” Tolerant to EGFR Tyrosine Kinase Inhibitors2017
- Author(s)
  Terai Hideki、Kitajima Shunsuke、Potter Danielle S.、Matsui Yusuke、et al.
- Journal Title
  
  Cancer Research
  
  Volume: 78 Issue: 4 Pages: 1044-1057
- DOI
  10.1158/0008-5472.can-17-1904
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K16146, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] High-resolution copy number variation analysis of schizophrenia in Japan.2017
- Author(s)
  Kushima I, Aleksic B, Nakatochi M, Shimamura T, Shiino T, Yoshimi A, Kimura H, Takasaki Y, Wang C, Xing J, Ishizuka K, Oya-Ito T, Nakamura Y, Arioka Y, Maeda T, Yamamoto M, Yoshida M, Noma H, Hamada S, Morikawa M, Uno Y, Okada T, Iidaka T, Iritani S, Yamamoto T,
- Journal Title
  
  Molecular Psychiatry
  
  Volume: 22 Issue: 3 Pages: 430-440
- DOI
  10.1038/mp.2016.88
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-ORGANIZER-24116001, KAKENHI-PLANNED-24116002, KAKENHI-ORGANIZER-25117001, KAKENHI-PLANNED-25117010, KAKENHI-PROJECT-25253074, KAKENHI-PROJECT-16H05375, KAKENHI-PROJECT-16H05380, KAKENHI-PROJECT-26461742, KAKENHI-PROJECT-15K14973, KAKENHI-PROJECT-15K19720, KAKENHI-PROJECT-15K09802, KAKENHI-PROJECT-24500986, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15559, KAKENHI-PROJECT-16K08421, KAKENHI-PROJECT-17K10295
[Journal Article] Long Noncoding RNA JHDM1D-AS1 Promotes Tumor Growth by Regulating Angiogenesis in Response to Nutrient Starvation2017
- Author(s)
  Kondo A, Nonaka A, Shimamura T, Yamamoto S, Yoshida T, Kodama T, Aburatani H, Osawa T
- Journal Title
  
  Molecular and Cellular Biology
  
  Volume: 37 Issue: 18
- DOI
  10.1128/mcb.00125-17
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K14987, KAKENHI-PROJECT-26710005, KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K14605, KAKENHI-PROJECT-15H05325
[Journal Article] PRC2-mediated transcriptomic alterations at the embryonic stage govern tumorigenesis and clinical outcome in MYCN-driven neuroblastoma.2017
- Author(s)
  Tsubota S, Kishida S, Shimamura T, Ohira M, Yamashita S, Cao D, Kiyonari S, Ushijima T, Kadomatsu K.
- Journal Title
  
  Cancer Res
  
  Volume: 77(19) Pages: 5259-5271
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H05325
[Journal Article] Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia.2017
- Author(s)
  Seki M, Kimura S, Isobe T, Yoshida K, (13 authors), Masuda K, Kawamoto H, Ohki K, Kato M, Arakawa Y, Koh K, Hanada R, Moritake H, Akiyama M, Kobayashi R, Deguchi T, Hashii Y, Imamura T, Sato A, Kiyokawa N, Oka A, Hayashi Y, Takagi M, Manabe A, Ohara A, Horibe K, Sanada M, Iwama A, Mano H, Miyano S, Ogawa S, Takita J
- Journal Title
  
  Nature Genetics
  
  Volume: 49 Issue: 8 Pages: 1274-1281
- DOI
  10.1038/ng.3900
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K09870, KAKENHI-PROJECT-17K10130, KAKENHI-PROJECT-17K10136, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02544, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-17H04234, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15498, KAKENHI-PROJECT-16K19574, KAKENHI-PROJECT-17K16242, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-15H05325
[Journal Article] Dynamically and epigenetically coordinated GATA/ETS/SOX transcription is indispensable for endothelial cell differentiation2017
- Author(s)
  Kanki Y, Nakaki R, Shimamura T, Matsunaga T, Yamamizu K, Katayama S, Suehiro JI, Osawa T, Aburatani H, Kodama T, Wada Y, Yamashita JK, Minami T.
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 印刷中 Issue: 8 Pages: 4344-4358
- DOI
  10.1093/nar/gkx159
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-15H01348, KAKENHI-PROJECT-26250041, KAKENHI-PROJECT-26290035, KAKENHI-PROJECT-26710013, KAKENHI-PROJECT-26430121, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15438, KAKENHI-PROJECT-15KK0251, KAKENHI-PROJECT-26710005, KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-17H03580, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-16K14605, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-15H05325
[Journal Article] Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.2017
- Author(s)
  Takahashi Y, Sugimachi K, Yamamoto K, Niida A, Shimamura T, Sato T, Watanabe M, Tanaka J, Kudo S, Sugihara K, Hase K, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Suzuki Y, Miyano S, Mori M, Mimori K
- Journal Title
  
  Cancer Sci.
  
  Volume: 108(11) Issue: 11 Pages: 2239-2247
- DOI
  10.1111/cas.13391
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-15H05325
[Journal Article] PRC2-Mediated Transcriptomic Alterations at the Embryonic Stage Govern Tumorigenesis and Clinical Outcome in MYCN-Driven Neuroblastoma2017
- Author(s)
  2.Tsubota S, Kishida S, Shimamura T, Ohira M, Yamashita S, Cao D, Kiyonari S, Ushijima T, Kadomatsu K.
- Journal Title
  
  Cancer Res.
  
  Volume: 77 Issue: 19 Pages: 5259-5271
- DOI
  10.1158/0008-5472.can-16-3144
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K08617, KAKENHI-PROJECT-17K10131, KAKENHI-PROJECT-16H05139, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18442
[Journal Article] Tumor subclonal progression model for cancer hallmark acquisition2017
- Author(s)
  Matsui Yusuke, Miyano Satoru, Shimamura Teppei
- Journal Title
  
  Proceedings of CIBB2017
  
  Volume: 1 Pages: 1-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K12139
[Journal Article] Extracellular Acidic pH Activates the Sterol Regulatory Element-binding Protein 2 to Promote Tumor Progression2017
- Author(s)
  Kondo A, Yamamoto S, Nakaki R, Shimamura T, Hamakubo T, Sakai J, Kodama T, Yoshida T, Aburatani H and Osawa T
- Journal Title
  
  Cell Reports
  
  Volume: 18 Issue: 9 Pages: 2228-2242
- DOI
  10.1016/j.celrep.2017.02.006
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-26710005, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K14605, KAKENHI-PROJECT-16H06390, KAKENHI-PROJECT-15H05325
[Journal Article] Comprehensive genetic analysis of donor cell derived leukemia with KMT2A rearrangement.2017
- Author(s)
  Taniguchi R, Muramatsu H, Okuno Y, Suzuki K, Obu S, Nakatochi M, Shimamura T, Takahashi Y, Horikoshi Y, Watanabe K, Kojima S.
- Journal Title
  
  Pediatr Blood Cancer
  
  Volume: 65(2) Issue: 2
- DOI
  10.1002/pbc.26823
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H05325
[Journal Article] ddiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells.2017
- Author(s)
  Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji E, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada K, Ogawa T, Tojo A, Miyano S, Gotoh N.
- Journal Title
  
  Oncogene
  
  Volume: 36 Pages: 1276-1286
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H04294
[Journal Article] Addiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells2017
- Author(s)
  Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji EI, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada KI, Ogawa T, Tojo A, Miyano S, Gotoh N
- Journal Title
  
  Oncogene
  
  Volume: 36(9) Issue: 9 Pages: 1276-1286
- DOI
  10.1038/onc.2016.293
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H06391, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-16J40231, KAKENHI-PROJECT-15K14381, KAKENHI-PROJECT-16K08672, KAKENHI-PROJECT-15H05325
[Journal Article] GIMLET: Identifying biological modulators in context-specific gene regulation using local energy statistics2017
- Author(s)
  Shimamura Teppei, Matsui Yusuke, Kajino Taisuke, Takahashi Takashi, Miyano Satoru
- Journal Title
  
  Proceedings of CIBB2017
  
  Volume: 1 Pages: 1-6
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K12139
[Journal Article] phyC: Clustering cancer evolutionary trees.2017
- Author(s)
  Matsui Y, Niida A, Uchi R, Mimori K, Miyano S, Shimamura T:
- Journal Title
  
  PLoS Comput Biol.
  
  Volume: 13(5) Issue: 5 Pages: 1005509-1005509
- DOI
  10.1371/journal.pcbi.1005509
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-16K16146, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01572, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] Aberrant Methylation of FOXE1 Contributes to a Poor Prognosis for Patients with Colorectal Cancer.2016
- Author(s)
  Sugimachi K, Matsumura T, Shimamura T, Hirata H, Uchi R, Ueda M, Sakimura S, Iguchi T, Eguchi H, Masuda T, Morita K, Takenaka K, Maehara Y, Mori M, Mimori K.
- Journal Title
  
  Ann Surg Oncol.
  
  Volume: 23(12) Issue: 12 Pages: 3948-3955
- DOI
  10.1245/s10434-016-5289-x
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population.2016
- Author(s)
  G. Sawada (他43名, 山本21番目)
- Journal Title
  
  Gastroenterology
  
  Volume: 150 Issue: 5 Pages: 1171-1182
- DOI
  10.1053/j.gastro.2016.01.035
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496
[Journal Article] NECAB3 Promotes Activation of Hypoxia-inducible factor-1 during Normoxia and Enhances Tumourigenicity of Cancer Cells2016
- Author(s)
  1.Nakaoka HJ, Hara T, Yoshino S, Kanamori A, Matsui Y, Shimamura T, Sato H, Murakami Y, Seiki M, Sakamoto T
- Journal Title
  
  Sci Rep
  
  Volume: 6 Issue: 1 Pages: 22784-22784
- DOI
  10.1038/srep22784
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K06829, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-24591313, KAKENHI-PROJECT-25460382, KAKENHI-PROJECT-26640121, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25290051, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-16H04695
[Journal Article] Detection of differential distributions of methylation patterns2016
- Author(s)
  Matsui Y, Mizuta M, Miyano S, Shimamura T
- Journal Title
  
  Bioinformatics
  
  Volume: 印刷中 Issue: 15 Pages: 1-8
- DOI
  10.1093/bioinformatics/btw138
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-25540008, KAKENHI-PROJECT-15K12139, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H05325
[Journal Article] Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution.2016
- Author(s)
  R. Uchi (他40名, 山本36番目)
- Journal Title
  
  PLoS Genetics
  
  Volume: 12 Issue: 2 Pages: 1-24
- DOI
  10.1371/journal.pgen.1005778
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10150, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25462038, KAKENHI-PROJECT-25462070, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26861003, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10170, KAKENHI-PROJECT-15H05325
[Journal Article] Mutational landscape and clonal architecture in grade II and III gliomas2015
- Author(s)
  Suzuki H, Aoki K, Natsume A, Ogawa S. et al.
- Journal Title
  
  Nat Genet.
  
  Volume: 47 Issue: 5 Pages: 458-468
- DOI
  10.1038/ng.3273
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22134006, KAKENHI-PLANNED-23107010, KAKENHI-PROJECT-24390341, KAKENHI-PROJECT-15K10337, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K19964, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26640088, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25861268, KAKENHI-PROJECT-25290048
[Journal Article] An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma2015
- Author(s)
  Sawada G, Niida A, Hirata H, Komatsu H, Uchi R, Shimamura T, Takahashi Y, Kurashige J, Matsumura T, Ueo H, Takano Y, Ueda M, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Yamasaki M, Tanaka F, Tachimori Y, Kajiyama Y, Natsugoe S, Fujita H, Tanaka Y, Calin G, Miyano S, Doki Y, Mori M, Mimori K
- Journal Title
  
  PLoS One
  
  Volume: 10(10) Issue: 10 Pages: e0139808-e0139808
- DOI
  10.1371/journal.pone.0139808
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
[Journal Article] Integrated genetic and epigenetic analysis defines novel molecular subgroups in rhabdomyosarcoma.2015
- Author(s)
  Seki M, Nishimura R, Yoshida K, Shimamura T, Shiraishi Y, Sato Y, Kato M, Chiba K, Tanaka H, Hoshino N, Nagae G, Shiozawa Y, Okuno Y, Hosoi H, Tanaka Y, Okita H, Miyachi M, Souzaki R, Taguchi T, Koh K, Hanada R, Kato K, Nomura Y, Akiyama M, Oka A, Igarashi T, Miyano S, Aburatani H, Hayashi Y, Ogawa S, Takita J.
- Journal Title
  
  Nat Commun.
  
  Volume: 6 Issue: 1 Pages: 7557-7557
- DOI
  10.1038/ncomms8557
- NAID
  120005623266
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-26461566, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-25461611, KAKENHI-PROJECT-25670482, KAKENHI-PROJECT-26670493, KAKENHI-PROJECT-26670766, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26293242
[Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015
- Author(s)
  Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T
- Journal Title
  
  MC Syst Biol
  
  Volume: 9(1) Pages: 14-14
- NAID
  120005749949
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Integrated molecular analysis of adult T cell leukemia/lymphoma.2015
- Author(s)
  Kataoka K, Nagata Y, Kitanaka A, Shiraishi Y, Shimamura T, Yasunaga J, Totoki Y, Chiba K, Sato-Otsubo A, Nagae G, et al.
- Journal Title
  
  Nat Genet.
  
  Volume: 47(11) Issue: 11 Pages: 1304-15
- DOI
  10.1038/ng.3415
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-15K09479, KAKENHI-PROJECT-15K09507, KAKENHI-PROJECT-26460554, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-25250020, KAKENHI-PROJECT-26893127, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-25293219
[Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015
- Author(s)
  Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T.
- Journal Title
  
  BMC Systems Biology
  
  Volume: 9 Issue: 1 Pages: 14-14
- DOI
  10.1186/s12918-015-0154-2
- NAID
  120005749949
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24300111, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-25730173
[Journal Article] A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models2015
- Author(s)
  Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S
- Journal Title
  
  Computational Statistics & Data Analysis
  
  Volume: 94 Pages: 63-74
- DOI
  10.1016/j.csda.2015.08.003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H06008, KAKENHI-PROJECT-25730173
[Journal Article] High performance computing of a fusion gene detection pipeline on the K computer2015
- Author(s)
  Ito S, Shiraishi Y, Shimamura T, Chiba K, Miyano S
- Journal Title
  
  BIBM
  
  Volume: 2015 Pages: 1441-1447
- DOI
  10.1109/bibm.2015.7359888
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-15H05912
[Journal Article] Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs2015
- Author(s)
  Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N
- Journal Title
  
  Scientific Report
  
  Volume: 5 Issue: 1 Pages: 13076-13076
- DOI
  10.1038/srep13076
- NAID
  120005764206
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18426, KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-26640072, KAKENHI-PROJECT-25730173
[Journal Article] Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal squamous cell carcinoma2014
- Author(s)
  Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K
- Journal Title
  
  Ann Surg Oncol
  
  Volume: 21 Suppl 4 Pages: 640-647
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker2014
- Author(s)
  Park H, Shimamura T, Miyano S, Imoto S
- Journal Title
  
  PLoS One
  
  Volume: 9(10) Issue: 10 Pages: e108990-e108990
- DOI
  10.1371/journal.pone.0108990
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25730173
[Journal Article] Allelic Imbalance at an 8q24 Oncogenic SNP is involved in activating MYC in human colorectal cancer2014
- Author(s)
  Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K
- Journal Title
  
  Ann Surg Oncol
  
  Volume: 21 Suppl 4 Pages: 515-521
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal squamous cell carcinoma.2014
- Author(s)
  Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K.
- Journal Title
  
  Ann Surg Oncol.
  
  Volume: 4 Issue: S4 Pages: 640-647
- DOI
  10.1245/s10434-014-3740-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24592005, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
[Journal Article] Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker2014
- Author(s)
  Park H, Shimamura T, Miyano S, Imoto S
- Journal Title
  
  PLoS One
  
  Volume: 9(1)
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Allelic Imbalance at an 8q24 Oncogenic SNP is Involved in Activating MYC in Human Colorectal Cancer2014
- Author(s)
  Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K
- Journal Title
  
  Ann Surg Oncol
  
  Volume: 21 Issue: S4 Pages: 3468-3476
- DOI
  10.1245/s10434-013-3468-6
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24591984, KAKENHI-PROJECT-25730173
[Journal Article] Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma2014
- Author(s)
  Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J
- Journal Title
  
  Cancer Res
  
  Volume: 74 Issue: 10 Pages: 2742-9
- DOI
  10.1158/0008-5472.can-13-2470
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23390269, KAKENHI-PROJECT-25253095, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26293242, KAKENHI-PROJECT-26670493
[Journal Article] Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma2014
- Author(s)
  Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J
- Journal Title
  
  Cancer Res.
  
  Volume: 74（１０） Pages: 2742-2749
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1.2014
- Author(s)
  Barclay, S.S., Tamura, T., Ito H., Fujita, K., Tagawa, K., Shimamura, T., Katsuta, A., Shiwaku, H., Sone, M., Imoto, S., Miyano, S. and Okazawa, H.
- Journal Title
  
  Hum Mol Genet
  
  Volume: 23 Issue: 5 Pages: 1345-1364
- DOI
  10.1093/hmg/ddt524
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-22110001, KAKENHI-PLANNED-22110002, KAKENHI-PROJECT-23500401, KAKENHI-PROJECT-24500378, KAKENHI-PROJECT-24700374, KAKENHI-PROJECT-25730173
[Journal Article] Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis2013
- Author(s)
  Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M.
- Journal Title
  
  Cancer Res
  
  Volume: 73 Issue: 7 Pages: 2059
- DOI
  10.1158/0008-5472.can-12-0326
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23591937, KAKENHI-PLANNED-24108006, KAKENHI-PROJECT-24591984, KAKENHI-PROJECT-25430111, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25730173
[Journal Article] The Tumor-suppressive mir-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinoma.2013
- Author(s)
  Furuta M
- Journal Title
  
  PLoS One
  
  Volume: 8 Issue: 3 Pages: e60155-e60155
- DOI
  10.1371/journal.pone.0060155
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-22130001, KAKENHI-PLANNED-22134002, KAKENHI-PROJECT-22240090, KAKENHI-PROJECT-23390077, KAKENHI-PROJECT-25250019, KAKENHI-PROJECT-25253081, KAKENHI-PROJECT-25640062, KAKENHI-PROJECT-25730173, KAKENHI-PLANNED-22134004
[Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms2013
- Author(s)
  Kon A, Shih LY, Sanada M, Shiraishi Y, Okuno Y, Nagae G, Nishimoto A, Nowak D, Sato Y, Shimamura T, Tanaka H, Chiba K, Yamaguchi T, Otsu M, Obara N, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.
- Journal Title
  
  Nature Genet.
  
  Volume: 45(10) Pages: 1232-1237
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms.2013
- Author(s)
  Kon A, Yoshida K
- Journal Title
  
  Nature Genet.
  
  Volume: 45 Issue: 10 Pages: 1232-1237
- DOI
  10.1038/ng.2731
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134003, KAKENHI-PLANNED-22134006, KAKENHI-PROJECT-22221009, KAKENHI-PLANNED-23106004, KAKENHI-PROJECT-23249052, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24249056, KAKENHI-PROJECT-24390242, KAKENHI-PROJECT-24659458, KAKENHI-PROJECT-25290065, KAKENHI-PROJECT-25461408, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25670471, KAKENHI-PROJECT-25670489, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521
[Journal Article] Inhibition of histone demethylase JMJD1A improves anti-angiogenic therapy and reduces tumor associated macrophages2013
- Author(s)
  Shimamura T, Wang F, Suehiro J, Kanki Y, Wada Y, Yuasa Y, Aburatani H, Miyano S, Minami T, Kodama T, Shibuya M
- Journal Title
  
  Cancer Res
  
  Volume: 73 Issue: 10 Pages: 3019-3028
- DOI
  10.1158/0008-5472.can-12-3231
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23300342, KAKENHI-PROJECT-23701047, KAKENHI-PUBLICLY-24116509, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24650609, KAKENHI-PROJECT-24700969, KAKENHI-PROJECT-24710227, KAKENHI-PUBLICLY-25118505, KAKENHI-PUBLICLY-25125707, KAKENHI-PUBLICLY-25134706, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25893063
[Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2013
- Author(s)
  Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S.
- Journal Title
  
  Nature Genet.
  
  Volume: 45(8) Pages: 860-867
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Inhibition of histone demethylase JMJD1A improves anti-angiogenic therapy and reduces tumor associated macrophages2013
- Author(s)
  Osawa T, Tsuchida R, Muramatsu M, Shimamura T, Wang F, Suehiro JI, Kanki Y, Wada Y, Yuasa Y, Aburatani H, Miyano S, Minami T, Kodama T, Shibuya M.
- Journal Title
  
  Cancer Res.
  
  Volume: 73(10) Pages: 3019-3028
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma.2013
- Author(s)
  Sato Y, Yoshida K
- Journal Title
  
  Nature Genet.
  
  Volume: 45 Issue: 8 Pages: 860-867
- DOI
  10.1038/ng.2699
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134008, KAKENHI-PLANNED-24112006, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24700272, KAKENHI-PROJECT-25291023, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521
[Journal Article] Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis2013
- Author(s)
  Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M
- Journal Title
  
  Cancer Res.
  
  Volume: 73(7) Pages: 2059-2069
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma2012
- Author(s)
  後藤　典子
- Journal Title
  
  PLoS ONE
  
  Volume: 7 Issue: 9 Pages: e43923-e43923
- DOI
  10.1371/journal.pone.0043923
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22130009, KAKENHI-PROJECT-22300099, KAKENHI-PROJECT-23390062, KAKENHI-PLANNED-22134004
[Journal Article] Identifying Gene pathways associated with cancer characteristics via sparse statistical methods2012
- Author(s)
  Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 9(4) Issue: 4 Pages: 966-972
- DOI
  10.1109/tcbb.2012.48
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Statistical model-based testing to evaluate the recurrence of genomic aberrations2012
- Author(s)
  Niida A, Imoto S, Shimamura T, Miyano S
- Journal Title
  
  Bioinformatics
  
  Volume: 28(12) Issue: 12 Pages: i115-i120
- DOI
  10.1093/bioinformatics/bts203
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells2011
- Author(s)
  Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N
- Journal Title
  
  Am J Cancer Res
  
  Volume: 1(7) Pages: 828-833
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] SiGN : large-scale gene network estimation environment for high performance computing2011
- Author(s)
  Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S
- Journal Title
  
  Genome Informatics
  
  Volume: 25 Pages: 40-52
- NAID
  130004567842
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Inferring contagion in regulatory networks2011
- Author(s)
  Fujita A, Sato JR, Demas MAA, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar, MC, Miyano S
- Journal Title
  
  IEEE/ACM Transactions on Computational Biology and Bioinformatics
  
  Volume: 8(2) Issue: 2 Pages: 570-576
- DOI
  10.1109/tcbb.2010.40
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition2011
- Author(s)
  Shimamura, T., Imoto, S., Shimada, Y., Hosono, Y., Niida, A., Nagasaki, M., Yamaguchi, R., Takahashi, T., Miyano, S
- Journal Title
  
  PLoS ONE
  
  Volume: 6 Issue: 6 Pages: e20804-e20804
- DOI
  10.1371/journal.pone.0020804
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21249037, KAKENHI-PLANNED-22134004, KAKENHI-PLANNED-22134005
[Journal Article] Inferring dynamic gene networks under varying conditions for transcriptomic network comparison2010
- Author(s)
  Shimamura, T., Imoto, S., Yamaguchi, R., Nagasaki, M., Miyano, S.
- Journal Title
  
  Bioinformatics
  
  Volume: 26(8) Pages: 1064-1072
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning2010
- Author(s)
  Kawano, S., Shimamura, T., Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Yoshida, R., Print, C., Miyano, S.
- Journal Title
  
  Proc.IEEE 10th International Symposium on Bioinformatics & Bioengineering
  
  Pages: 253-258
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Collocation-based sparse estimation for constructing dynamic gene networks2010
- Author(s)
  Shimamura, T., Imoto, S., Nagasaki, M., Yamauchi, M., Yamaguchi, R., Fujita, A., Tamada, Y, Gotoh, N., Miyano, S.
- Journal Title
  
  Genome Informatics
  
  Volume: 24 Pages: 164-178
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Journal Article] Model-free unsupervised gene set screening based on information enrichment in expression profiles2010
- Author(s)
  Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Fujita, A., Shimamura, T., Miyano, S.
- Journal Title
  
  Bioinformatics
  
  Volume: 26(24) Pages: 3090-3097
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-22134004
[Presentation] Deep generative models to reveal cellular level dynamics and communication2023
- Author(s)
  島村徹平
- Organizer
  10th International Congress on Industrial and Applied Mathematics(ICIAM2023)
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層生成モデルによる細胞運命決定シミュレーション2023
- Author(s)
  島村徹平
- Organizer
  第96回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 生成AIで紐解く多細胞システムの動作原理2023
- Author(s)
  島村徹平
- Organizer
  日本学術会議生物系薬学分科会公開シンポジウム
- Invited
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] 深層学習による細胞ダイナミクスの新次元俯瞰2023
- Author(s)
  島村徹平
- Organizer
  第5回がんと代謝研究会・若手の会
- Invited
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] 未病検知のための深層生成モデルの開発と応用2023
- Author(s)
  島村徹平
- Organizer
  第5回日本メディカルAI学会学術集会
- Invited
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] Deep generative models to reveal cellular level dynamics and communication2023
- Author(s)
  島村徹平
- Organizer
  ICIAM2023
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] Functional analysis of LCI15, which suppresses the CO2-concentrating mechanism in the green algae Chlamydomonas reinhardtii2023
- Author(s)
  Shizuka Miichi、Daisuke Shimamura、Junko Yasuda、Takashi Yamano、Hideya Fukuzawa
- Organizer
  19th International Student Seminar
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層生成モデルによる細胞運命決定シュミレーション2023
- Author(s)
  島村徹平
- Organizer
  第96回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] 深層生成モデルで読み解く生命システムの動作原理2023
- Author(s)
  島村徹平
- Organizer
  第7回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 深層学習による細胞ダイナミクスの新次元俯瞰2023
- Author(s)
  島村徹平
- Organizer
  第5回がんと代謝研究会・若手の会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 未病検知のための深層生成モデルの開発と応用2023
- Author(s)
  島村徹平
- Organizer
  第5回日本メディカルAI学会学術集会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層生成モデルで読み解く生命システムの動作原理2023
- Author(s)
  島村徹平
- Organizer
  第7回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] AIのレンズを通じて見る多細胞システムのダイナミクス2023
- Author(s)
  島村徹平
- Organizer
  第46回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-23H04938
[Presentation] AIのレンズを通じて見る多細胞システムのダイナミクス2023
- Author(s)
  島村徹平
- Organizer
  第46回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] データから読み解く生命医科学2022
- Author(s)
  島村徹平
- Organizer
  脳神経内科医のためのバイオインフォマティクス・ハンズオン 2021
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第60回日本癌治療学会学術集会会長企画シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第95回日本生化学会大会企画シンポジウム
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  LINK-Jセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] A New Modality Using Deep Learning for Elucidating Tumor Microenvironment2022
- Author(s)
  島村徹平
- Organizer
  第81回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第95回日本生化学会大会企画シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  LINK-Jセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 深層生成モデルで読み解く生命システムの動作原理2022
- Author(s)
  島村徹平
- Organizer
  第7回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] A new modality for elucidating tumor microenvironment using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第81回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Identification of human pDC/B bifurcation with highly fluctuating cell state dynamics2022
- Author(s)
  永春　圭規、小嶋　泰弘、廣瀬　遥香、日野原　邦彦、杦本　由香、　仁井　栄、俵　功、島村　徹平、片山　直之、大石　晃嗣
- Organizer
  第84回日本血液学会学術集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第95回日本生化学会大会企画シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] Estimating fluctuations in cell state dynamics and predicting fate bifurcations under influenza infection using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第20回あわじ感染と免疫国際フォーラム
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] Abnormal pyrenoid morphology due to the SAGA1 mutation affects CAS-dependent gene expression and CAS localization in Chlamydomonas reinhardtii2022
- Author(s)
  Daisuke Shimamura、Takashi Yamano、Yuuki Niikawa、Hu Donghui、Hideya Fukuzawa
- Organizer
  The 10th International Symposium on Inorganic Carbon Utilization by Aquatic Photosynthetic Organisms
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  LINK-Jセミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] データから読み解く生命医科学2022
- Author(s)
  島村徹平
- Organizer
  脳神経内科医のためのバイオインフォマティクス・ハンズオン 2021
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] A new modality for elucidating tumor microenvironment using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第81回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第95回日本生化学会大会企画シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Estimating fluctuations in cell state dynamics and predicting fate bifurcations under influenza infection using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第20回あわじ感染と免疫国際フォーラム
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 細胞間コミュニケーションを読み解くためのデータ科学2022
- Author(s)
  島村徹平
- Organizer
  第6回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] 深層学習で細胞社会を読み解く2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会フォーラム
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 深層学習で細胞社会を読み解く2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習で細胞社会を読み解く2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会フォーラム
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Estimating fluctuations in cell state dynamics and predicting fate bifurcations under influenza infection using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第20回あわじ感染と免疫国際フォーラム
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] 細胞間コミュニケーションを読み解くためのデータ科学2022
- Author(s)
  島村徹平
- Organizer
  第6回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第60回日本癌治療学会学術集会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 細胞間コミュニケーションを読み解くためのデータ科学2022
- Author(s)
  島村徹平
- Organizer
  第6回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] データから読み解く生命医科学2022
- Author(s)
  島村徹平
- Organizer
  脳神経内科医のためのバイオインフォマティクス・ハンズオン 2021
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] A new modality for elucidating tumor microenvironment using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第81回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Unveiling highly fluctuating single-cell transcriptome dynamics at a novel bifurcation point in human lymphoid pathway2022
- Author(s)
  Keiki Nagaharu、Yasuhiro Kojima、Yuki Kageyama、Yuka Sugimoto、Masahiro Masuya、Shigeru Nii、Masahide Seki、Yutaka Suzuki、Isao Tawara、Teppei Shimamura、Naoyuki Katayama、Kohshi Ohishi
- Organizer
  64th ASH Annual Meeting & Exposition
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第60回日本癌治療学会学術集会会長企画シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Estimating fluctuations in cell state dynamics and predicting fate bifurcations under influenza infection using deep learning2022
- Author(s)
  島村徹平
- Organizer
  第20回あわじ感染と免疫国際フォーラム
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 深層学習で細胞社会を読み解く2022
- Author(s)
  島村徹平
- Organizer
  第45回日本分子生物学会年会フォーラム
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 深層学習による生体内微小環境の新次元俯瞰2022
- Author(s)
  島村徹平
- Organizer
  第60回日本癌治療学会学術集会会長企画シンポジウム
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04839
[Presentation] データとモデルが駆動する生命科学2021
- Author(s)
  島村徹平
- Organizer
  第32回高遠・分子細胞生物学シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 細胞間コミュニケーションを読み解く深層学習2021
- Author(s)
  島村徹平
- Organizer
  第94回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] Deep learning to decipher cell dynamics and cell-cell interactions2021
- Author(s)
  島村徹平
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 一細胞マルチモーダル情報をデータとモデルから読み解く2021
- Author(s)
  島村徹平
- Organizer
  産業技術研究所人工知能研究センター第51回AIセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Modeling cell population dynamics and cell-to-cell communication from single-cell multi-omics data2021
- Author(s)
  島村徹平
- Organizer
  第80回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Deep learning to decipher cell dynamics and cell-cell interactions2021
- Author(s)
  島村徹平
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 細胞集団のダイナミクスを捉えるためのベイズモデリング2021
- Author(s)
  島村徹平
- Organizer
  第5回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 細胞間コミュニケーションを読み解く深層学習2021
- Author(s)
  島村徹平
- Organizer
  第94回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 細胞集団のダイナミクスを捉えるためのベイズモデリング2021
- Author(s)
  島村徹平
- Organizer
  第5回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 細胞間コミュニケーションを読み解く深層学習2021
- Author(s)
  島村徹平
- Organizer
  第94回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Modeling cell population dynamics and cell-to-cell communication from single-cell multi-omics data2021
- Author(s)
  島村徹平
- Organizer
  第80回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] 細胞集団のダイナミクスを捉えるためのベイズモデリング2021
- Author(s)
  島村徹平
- Organizer
  第5回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] Deep learning to decipher cell dynamics and cell-cell interactions2021
- Author(s)
  島村徹平
- Organizer
  第44回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] データとモデルが駆動する生命科学2021
- Author(s)
  島村徹平
- Organizer
  第32回高遠・分子細胞生物学シンポジウム
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] データとモデルが駆動する生命科学2021
- Author(s)
  島村徹平
- Organizer
  第32回高遠・分子細胞生物学シンポジウム
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 一細胞マルチモーダル情報をデータとモデルから読み解く2021
- Author(s)
  島村徹平
- Organizer
  産業技術研究所人工知能研究センター第51回AIセミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] 細胞集団のダイナミクスを捉えるためのベイズモデリング2021
- Author(s)
  島村徹平
- Organizer
  第5回理論免疫学ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] シングルセルオミクス解析のためのAI技術の最新動向2021
- Author(s)
  島村徹平
- Organizer
  第39回内分泌代謝学サマーセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] シングルセルオミクス解析のためのAI技術の最新動向2021
- Author(s)
  島村徹平
- Organizer
  第39回内分泌代謝学サマーセミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] シングルセルオミクス解析のためのAI技術の最新動向2021
- Author(s)
  島村徹平
- Organizer
  第39回内分泌代謝学サマーセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 一細胞マルチモーダル情報をデータとモデルから読み解く2021
- Author(s)
  島村徹平
- Organizer
  産業技術研究所人工知能研究センター第51回AIセミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] Modeling cell population dynamics and cell-to-cell communication from single-cell multi-omics data2021
- Author(s)
  島村徹平
- Organizer
  第80回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] がん研究における一細胞解析のためのモデリング・AI 技術の最新動向2020
- Author(s)
  島村徹平
- Organizer
  第79回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 今こそ知りたい！行列因子分解～ゼロから始めるマルチオミクス解析～2020
- Author(s)
  島村徹平
- Organizer
  代謝統合オミクス若手技術セミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 臓器連関トランスオミクス解析のためのベイズモデリング2020
- Author(s)
  島村徹平
- Organizer
  第93回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] データサイエンスを駆動力とした多細胞ダイナミクスの数理モデリング2020
- Author(s)
  島村徹平
- Organizer
  新学術領域「細胞ダイバース」第3回若手ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 多細胞時空間動態のベイズモデリングとその応用2020
- Author(s)
  島村徹平
- Organizer
  第2回日本メディカルAI学会学術集会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] がん研究における一細胞解析のためのモデリング・AI 技術の最新動向2020
- Author(s)
  島村徹平
- Organizer
  第79回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] 数理モデリングによる生命現象の理解と制御2020
- Author(s)
  島村徹平
- Organizer
  東北大学加齢研究所セミナー・キャノンメディカルシステムズARL共催セミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 多細胞時空間動態のベイズモデリングとその応用2020
- Author(s)
  島村徹平
- Organizer
  第2回日本メディカルAI学会学術集会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 数理モデリングによる生命現象の理解と制御2020
- Author(s)
  島村徹平
- Organizer
  東北大学加齢研究所セミナー・キャノンメディカルシステムズARL共催セミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 臓器連関トランスオミクス解析のためのベイズモデリング2020
- Author(s)
  島村徹平
- Organizer
  第93回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 今こそ知りたい！行列因子分解～ゼロから始めるマルチオミクス解析～2020
- Author(s)
  島村徹平
- Organizer
  代謝統合オミクス若手技術セミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] データサイエンスを駆動力とした多細胞ダイナミクスの数理モデリング2020
- Author(s)
  島村徹平
- Organizer
  新学術領域「細胞ダイバース」第3回若手ワークショップ
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] がん研究における一細胞解析のためのモデリング・AI 技術の最新動向2020
- Author(s)
  島村徹平
- Organizer
  第79回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 臓器連関トランスオミクス解析のためのベイズモデリング2020
- Author(s)
  島村徹平
- Organizer
  第93回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] がん研究における一細胞解析のためのモデリング・AI 技術の最新動向2020
- Author(s)
  島村徹平
- Organizer
  第79回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 今こそ知りたい！行列因子分解～ゼロから始めるマルチオミクス解析～2020
- Author(s)
  島村徹平
- Organizer
  代謝統合オミクス若手技術セミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-20H04841
[Presentation] 今こそ知りたい！行列因子分解～ゼロから始めるマルチオミクス解析～2020
- Author(s)
  島村徹平
- Organizer
  代謝統合オミクス若手技術セミナー
- Invited
- Data Source
  KAKENHI-PROJECT-20K21832
[Presentation] 臓器連関トランスオミクス解析のためのベイズモデリング2020
- Author(s)
  島村徹平
- Organizer
  第93回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-20H04281
[Presentation] 医学と予兆学～疾病発生および治癒効果の予兆に向けて～2019
- Author(s)
  島村徹平
- Organizer
  名古屋大学予兆学シンポジウム
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 多細胞時空間解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第11回がんゲノム・エピゲノム数理統計研究会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 一細胞時空間オミクス解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第92回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 一細胞遺伝子発現プロファイルからの細胞集団および細胞間コミュニケーションの動態モデリング2019
- Author(s)
  島村徹平
- Organizer
  第57回日本生物物理学会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 拡張された非負値行列因子分解によるオミクスデータの解析2019
- Author(s)
  島村徹平
- Organizer
  2019年度統計関連学会連合大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 一細胞時空間オミクス解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第92回日本生化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] データサイエンスを駆動力とした多細胞時空間動態のモデリング2019
- Author(s)
  島村徹平
- Organizer
  Single-Cell 2019 OSAKAセミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] データサイエンスを駆動力とした多細胞時空間動態のモデリング2019
- Author(s)
  島村徹平
- Organizer
  Single-Cell 2019 OSAKAセミナー
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] データサイエンスとAIで迫る時空間オミクス研究の現在と未来2019
- Author(s)
  島村徹平
- Organizer
  大阪大学蛋白質研究所セミナー「がん研究の新機軸」
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 拡張された非負値行列因子分解によるオミクスデータの解析2019
- Author(s)
  島村徹平
- Organizer
  2019年度統計関連学会連合大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 多細胞時空間解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第42回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] がん免疫療法の耐性化ダイナミクスを理解するための数理モデリング2019
- Author(s)
  阿部興、島村徹平
- Organizer
  日本バイオインフォマティクス学会2019年年会・第8回生命医薬情報学連合大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 一細胞遺伝子発現プロファイルからの細胞集団および細胞間コミュニケーションの動態モデリング2019
- Author(s)
  島村徹平
- Organizer
  第57回日本生物物理学会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] がん免疫療法の耐性化ダイナミクスを理解するための数理モデリング2019
- Author(s)
  阿部興、島村徹平
- Organizer
  日本バイオインフォマティクス学会2019年年会・第8回生命医薬情報学連合大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 多細胞時空間解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第42回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-19H05210
[Presentation] 多細胞時空間解析のためのデータサイエンス2019
- Author(s)
  島村徹平
- Organizer
  第11回がんゲノム・エピゲノム数理統計研究会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 医学と予兆学～疾病発生および治癒効果の予兆に向けて～2019
- Author(s)
  島村徹平
- Organizer
  名古屋大学予兆学シンポジウム
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] データサイエンスとAIで迫る時空間オミクス研究の現在と未来2019
- Author(s)
  島村徹平
- Organizer
  大阪大学蛋白質研究所セミナー「がん研究の新機軸」
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 腫瘍内不均一性の一細胞トランスクリプトーム解析のためのバイオインフォマティクス2018
- Author(s)
  島村徹平
- Organizer
  第77回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] がん微小環境における細胞間相互作用のモデリング2018
- Author(s)
  島村徹平
- Organizer
  2018年度統計関連学会連合大会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] バイオインフォマティクスにおけるスパースモデリング2018
- Author(s)
  島村徹平
- Organizer
  日本行動計量学会　第46回大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] がん免疫システムの時間・空間・個体間多様性を読み解くデータサイエンス2018
- Author(s)
  島村徹平
- Organizer
  第41回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] Sparse Regression Modeling of Drug Response with A Localized Estimation Framework2018
- Author(s)
  島村徹平
- Organizer
  The Pacific Symposium on Biocomputing (PSB) 2018
- Int'l Joint Research
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] データサイエンスとの連携・融合による生命科学研究の新時代2018
- Author(s)
  島村徹平
- Organizer
  第61回日本神経化学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] がん免疫システムの時間・空間・個体間多様性を読み解くデータサイエンス2018
- Author(s)
  島村徹平
- Organizer
  第41回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] 疾患メタゲノム解析のためのベイズモデリング2018
- Author(s)
  島村徹平
- Organizer
  第7回生命医薬情報学連合大会(IIBMP2018)
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] Sparse Regression Modeling of Drug Response with A Localized Estimation Framework2018
- Author(s)
  島村徹平
- Organizer
  The Pacific Symposium on Biocomputing (PSB) 2018
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] バイオインフォマティクスにおけるスパースモデリング2018
- Author(s)
  島村徹平
- Organizer
  日本行動計量学会　第46回大会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] データサイエンスとの連携・融合による生命科学研究の新時代2018
- Author(s)
  島村徹平
- Organizer
  第61回日本神経化学会大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 疾患メタゲノム解析のためのベイズモデリング2018
- Author(s)
  島村徹平
- Organizer
  第7回生命医薬情報学連合大会(IIBMP2018)
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] がん微小環境における細胞間相互作用のモデリング2018
- Author(s)
  島村徹平
- Organizer
  2018年度統計関連学会連合大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-18H04798
[Presentation] 腫瘍内不均一性の一細胞トランスクリプトーム解析のためのバイオインフォマティクス2018
- Author(s)
  島村徹平
- Organizer
  第77回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] 生命科学におけるビッグデータ駆動型科学の実践と将来2017
- Author(s)
  島村徹平
- Organizer
  2017年度生命科学系学会合同年次大会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] 生命科学におけるビッグデータ駆動型科学の実践と将来2017
- Author(s)
  島村徹平
- Organizer
  2017年度生命科学系学会合同年次大会
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics2017
- Author(s)
  島村徹平
- Organizer
  CIBB2017(Computational Intelligence methods for Bioinformatics and Biostatistics)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] Sparse Regression Modeling of Drug Response with A Localized Estimation Framework2017
- Author(s)
  島村徹平
- Organizer
  ISMB/ECCB2017(Intelligent Systems for Molecular Biology and the 16TH European Conference on Computational Biology)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] システム生物学的アプローチに基づくオミックス統合解析2016
- Author(s)
  島村徹平
- Organizer
  第３９回日本分子生物学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] システム生物学的アプローチに基づくオミックス統合解析2016
- Author(s)
  島村徹平
- Organizer
  第３９回分子生物学会年会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] 局所距離相関に基づくモジュレーター因子の網羅的探索法2016
- Author(s)
  島村徹平
- Organizer
  2016年度統計関連学会連合大会
- Place of Presentation
  金沢大学（石川県金沢市）
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] Identifying biological modulators using local energy statistics2016
- Author(s)
  Teppei Shimamura
- Organizer
  CMStatistics 2016 (ERCIM2016)
- Place of Presentation
  セビリア大学（スペイン、セビリア）
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] マルチオミックス情報に基づくがんのモジュレーター因子の網羅的探索2016
- Author(s)
  島村徹平
- Organizer
  第５回生命医薬情報学連合大会
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] マルチオミックス情報に基づくがんのモジュレーター因子の網羅的探索2016
- Author(s)
  島村徹平
- Organizer
  第5回生命医薬情報学連合大会
- Place of Presentation
  東京国際交流館プラザ平成（東京都江東区）
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] Analysis of Big Data - Genome Data -2016
- Author(s)
  島村徹平
- Organizer
  実世界データ循環学サマースクール2016
- Place of Presentation
  ハノイ工科大学（ベトナム、ハノイ）
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] がんの俯瞰的理解のための統合的統計モデリング2015
- Author(s)
  島村徹平
- Organizer
  第38回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド（兵庫県神戸市）
- Year and Date
  2015-12-02
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] オミックスビッグデータ解析の現状と課題2015
- Author(s)
  島村徹平
- Organizer
  平成２６年度「複雑データの解析法に関する研究会」
- Place of Presentation
  統計数理研究所（東京都立川市）
- Year and Date
  2015-02-19
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] Bayesian integrated analysis of chromatin interaction maps2015
- Author(s)
  Shimamura T
- Organizer
  Pacific Symposium on Biocomputing 2015
- Place of Presentation
  The Fairmont Orchid, Hawaii （アメリカ、ハワイ州）
- Year and Date
  2015-01-06
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] Discovering modulators of gene regulation by local energy statistics2015
- Author(s)
  Teppei Shimamura
- Organizer
  IFCS2015
- Place of Presentation
  ボローニャ大学（イタリア、ボローニャ）
- Year and Date
  2015-07-07
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] Discovering modulators of gene regulation by local energy statistics2015
- Author(s)
  Teppei Shimamura
- Organizer
  IFCS2015
- Place of Presentation
  ボローニャ大学（イタリア、ボローニャ）
- Year and Date
  2015-07-07
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] がん悪性化に寄与する発現制御調整因子のイン・シリコ探索2015
- Author(s)
  島村徹平
- Organizer
  がんゲノムの情報と数理
- Place of Presentation
  東京大学医科学研究所（東京都港区）
- Year and Date
  2015-09-30
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] がんの俯瞰的理解のための統合的統計モデリング2015
- Author(s)
  島村徹平
- Organizer
  第38回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド（兵庫県神戸市）
- Invited
- Data Source
  KAKENHI-PROJECT-15H05325
[Presentation] がん悪性化に寄与する発現制御調整因子のイン・シリコ探索2015
- Author(s)
  島村徹平
- Organizer
  がんゲノムの情報と数理
- Place of Presentation
  東京大学医科学研究所（東京都港区）
- Year and Date
  2015-09-30
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] がんの俯瞰的理解のための統合的統計モデリング2015
- Author(s)
  島村徹平
- Organizer
  第38回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド（兵庫県神戸市）
- Year and Date
  2015-12-02
- Invited
- Data Source
  KAKENHI-PROJECT-15K12139
[Presentation] Integrative systems understanding of cancer metabolism with constraint-based modeling of metabolic flux2014
- Author(s)
  島村徹平
- Organizer
  第73回日本癌学会学術総会
- Place of Presentation
  パシフィコ横浜（神奈川県横浜市）
- Year and Date
  2014-09-26
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] オミクス解析におけるグラフィックス2014
- Author(s)
  島村徹平
- Organizer
  日本計算機統計学会第２８回シンポジウム
- Place of Presentation
  沖縄科学技術大学院大学（沖縄県恩納村）
- Year and Date
  2014-11-15
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] Systems analysis of cancer metabolism with constraint-based model of metabolic flux2014
- Author(s)
  島村徹平
- Organizer
  第８７回日本生化学会大会
- Place of Presentation
  国立京都国際会館（京都府京都市）
- Year and Date
  2014-10-17
- Invited
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] Hierarchical Bayes model-based analysis of chromatin interaction maps2013
- Author(s)
  Shimamura T
- Organizer
  Genome Informatics
- Place of Presentation
  Cold Spring Harbor Laboratory, NY, USA
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] Accurate detection of chromatin interactions from ChIA-PET sequencing data with a hierarchical Bayes model2013
- Author(s)
  Shimamura T
- Organizer
  Clinical Genomics and Informatics Europe
- Place of Presentation
  Sheraton Hotel and Spa, Lisbon, Portugal
- Data Source
  KAKENHI-PROJECT-25730173
[Presentation] 抗がん剤感受性予測に向けてのバイオインフォマティクスの現状と課題
- Author(s)
  島村徹平
- Organizer
  日本計算機統計学会第27回大会
- Place of Presentation
  青森県弘前大学
- Invited
- Data Source
  KAKENHI-PROJECT-25730173

1. SHIRAISHI Yuichi (70516880)

# of Collaborated Projects: 3 results

# of Collaborated Products: 5 results
2. GOTOH Noriko (10251448)

# of Collaborated Projects: 3 results

# of Collaborated Products: 4 results
3. MIYANO SATORU (50128104)

# of Collaborated Projects: 2 results

# of Collaborated Products: 26 results
4. IMOTO Seiya (10345027)

# of Collaborated Projects: 2 results

# of Collaborated Products: 16 results
5. YAMAGUCHI Rui (90380675)

# of Collaborated Projects: 2 results

# of Collaborated Products: 10 results
6. TAMADA Yoshinori (80435495)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
7. Osawa Tsuyoshi (50567592)

# of Collaborated Projects: 2 results

# of Collaborated Products: 3 results
8. 東條有伸 (00211681)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
9. 岡本康司 (80342913)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
10. 鈴木穣 (40323646)

# of Collaborated Projects: 2 results

# of Collaborated Products: 1 results
11. NAGASAKI Masao (90396862)

# of Collaborated Projects: 1 results

# of Collaborated Products: 7 results
12. HIGUCHI Tomoyuki (70202273)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. KAYANO Mitsunori (20590095)

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SHIMAMURA Teppei 島村 徹平

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Modeling and simulation of extracellular information systems using next-generation deep learningPrincipal Investigator

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ベイズ深層学習による細胞ダイナミクスの新次元俯瞰Principal Investigator

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Constructing a Disease-Related Microbiome Atlas for Advancing Understanding of Microbial FunctionalityPrincipal Investigator

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Development of Bayesian modeling approach for trans-omics data to explore inter-organ crosstalksPrincipal Investigator

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Development of Bayesian modeling approach to understand multicellular dynamicsPrincipal Investigator

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精神疾患の階層横断的理解を加速する数理モデリング技術の開発Principal Investigator

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Statistical modeling for cross-cutting understanding of life phenomenaPrincipal Investigator

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Transcription regulatory network atlas for functional ncRNA searchPrincipal Investigator

SHIMAMURA Teppei 島村徹平

[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022

[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022

[Book] 実験医学別冊最強のステップUPシリーズ空間オミクス解析スタートアップ実践ガイド、空間トランスクリプトームに基づく細胞間相互作用ネットワークの解析技術2022