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SHIMAMURA Teppei  島村 徹平

ORCIDConnect your ORCID iD *help
Researcher Number 00623943
Other IDs
Affiliation (Current) 2019: 名古屋大学, 医学系研究科, 特任准教授
Affiliation (based on the past Project Information) *help 2014 – 2019: 名古屋大学, 医学系研究科, 特任准教授
2017: 名古屋大学, 大学院医学系研究科, 特任准教授
2015: 名古屋大学, 医学(系)研究科(研究院), 准教授
2014 – 2015: 名古屋大学, 医学(系)研究科(研究院), 特任准教授
2013: 東京大学, 医科学研究所, 助教
Review Section/Research Field
Principal Investigator
Life / Health / Medical informatics / Biological Sciences
Except Principal Investigator
Complex systems / Tumor biology / Basic Section 50010:Tumor biology-related
Keywords
Principal Investigator
システム生物学 / バイオインフォマティクス / ネットワーク解析 / マルチオミクス / ベイズモデル / 次世代シークエンサー / 高次クロマチン構造 / エピゲノム / 遺伝子ネットワーク / 発現制御 … More / 転写制御 / 代謝シフト / 生体生命情報学 / 代謝ネットワーク / 代謝 / スパースモデリング … More
Except Principal Investigator
がん / システム生物学 / バイオインフォマティクス / 統計的モデリング / がん幹細胞 / 乳がん / ゲノム科学 / 遺伝統計学 / スーパーコンピュータ / 遺伝子ネットワーク / シークエンス解析 / 人工知能 / Single cell / cancer stem cells / breast cancer, / semaphoring, neuropilin / RNAシークエンス / シングルセル / 幹細胞 / 1細胞 / スフェロイド培養 / 遺伝子発現 / neuropilin / PDXモデル / ゲノム変異 / PDX / IGF / セマフォリン / がん微小環境 / 低pH / がん代謝 / 転写・代謝制御 / 転写制御 Less
  • Research Projects

    (10 results)
  • Research Products

    (83 results)
  • Co-Researchers

    (113 People)
  •  精神疾患の階層横断的理解を加速する数理モデリング技術の開発Principal InvestigatorOngoing

    • Principal Investigator
      島村 徹平
    • Project Period (FY)
      2019 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      Nagoya University
  •  Statistical modeling for cross-cutting understanding of life phenomenaPrincipal InvestigatorOngoing

    • Principal Investigator
      島村 徹平
    • Project Period (FY)
      2018 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      Nagoya University
  •  Integrative analysis of genetical mutations and heterogeneity based on stemness in breast cancer cellsOngoing

    • Principal Investigator
      後藤 典子
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 50010:Tumor biology-related
    • Research Institution
      Kanazawa University
  •  Understanding mechanism of acidic pH induced tumor progression

    • Principal Investigator
      Osawa Tsuyoshi
    • Project Period (FY)
      2016 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Tumor biology
    • Research Institution
      The University of Tokyo
  •  Transcription regulatory network atlas for functional ncRNA searchPrincipal Investigator

    • Principal Investigator
      Shimamura Teppei
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Nagoya University
  •  スーパーコンピューティングと革新的情報技術によるがんシステムの新次元探索Ongoing

    • Principal Investigator
      宮野 悟
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Elucidation of breast cancer tissue diversity by integration analysis of minimum unit omics

    • Principal Investigator
      Gotoh Noriko
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Tumor biology
    • Research Institution
      Kanazawa University
  •  Bayesian modeling for analyzing, integrating and understanding of intracellular metabolic shiftsPrincipal InvestigatorOngoing

    • Principal Investigator
      島村 徹平
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Young Scientists (A)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Nagoya University
  •  Development of a statistical approach to decipher information from high-order chromatin structure and the epigenomePrincipal Investigator

    • Principal Investigator
      Shimamura Teppei
    • Project Period (FY)
      2013 – 2015
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Nagoya University
      The University of Tokyo
  •  Development of Systems Cancer Research by Computation and Simulation

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo

All 2018 2017 2016 2015 2014 2013 2012 2011 2010 Other

All Journal Article Presentation

  • [Journal Article] Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks2018

    • Author(s)
      Park H, Shimamura T, Imoto S, Miyano S
    • Journal Title

      Journal of Computational Biology

      Volume: 25(2) Pages: 130-145

    • DOI
      10.1089/cmb.2017.0120
    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15K12139
  • [Journal Article] Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD82.2018

    • Author(s)
      Takeda Masafumi、Kanki Yasuharu、Masumoto Hidetoshi、Funakoshi Shunsuke、Hatani Takeshi、Fukushima Hiroyuki、Izumi-Taguchi Akashi、Matsui Yusuke、Shimamura Teppei、Yoshida Yoshinori、Yamashita Jun K.
    • Journal Title

      Cell Reports

      Volume: 22 Pages: 546-556

    • DOI
      10.1016/j.celrep.2017.12.057
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K15438, KAKENHI-PROJECT-16K16146, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H04819, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K19402, KAKENHI-PROJECT-15KK0251
  • [Journal Article] Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation.2018

    • Author(s)
      Kanki Y, Nakaki R, Shimamura T, Matsunaga T, Yamamizu K, Katayama S, Suehiro JI, Osawa T, Aburatani H, Kodama T, Wada Y, Yamashita JK, Minami T.
    • Journal Title

      Nucleic Acids Res.

      Volume: 印刷中 Pages: 4344-4358

    • DOI
      10.1093/nar/gkx159
    • Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-15H01348, KAKENHI-PROJECT-26250041, KAKENHI-PROJECT-26290035, KAKENHI-PROJECT-26710013, KAKENHI-PROJECT-26430121, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15438, KAKENHI-PROJECT-15KK0251, KAKENHI-PROJECT-26710005, KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-17H03580, KAKENHI-PROJECT-17H03614, KAKENHI-PROJECT-16K14605, KAKENHI-PROJECT-16H06279
  • [Journal Article] Prognostic relevance of genetic alterations in diffuse lower-grade gliomas.2018

    • Author(s)
      Aoki Kosuke、Nakamura Hideo、Suzuki Hiromichi et al.
    • Journal Title

      Neuro Oncol.

      Volume: 20 Pages: 66-77

    • DOI
      10.1093/neuonc/nox132
    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K10761, KAKENHI-PROJECT-17K16643, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H00758, KAKENHI-PROJECT-16H05436, KAKENHI-PROJECT-15K10337
  • [Journal Article] Integrated Molecular Characterization of the Lethal Pediatric Cancer Pancreatoblastoma.2018

    • Author(s)
      Isobe T, Seki M, Yoshida K, Sekiguchi M, Shiozawa Y, Shiraishi Y,..., Kataoka K, Sato Y, Kawai T, Chiba K, Tanaka H, Shimamura T, Kato M, Iguchi A, Hama A, Taguchi T, Akiyama M, Fujimura J, Inoue A, Ito T, Deguchi T, Kiyotani C, Iehara T, Hosoi H, Oka A, Sanada M, Tanaka Y, Hata K, Miyano S, Ogawa S, Takita J
    • Journal Title

      Cancer Research

      Volume: 78(4) Pages: 865-876

    • DOI
      10.1158/0008-5472.can-17-2581
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-15K12139
  • [Journal Article] Extracellular Acidic pH Activates the Sterol Regulatory Element-Binding Protein 2 to Promote Tumor Progression2017

    • Author(s)
      Kondo A, Yamamoto S, Nakaki R, Shimamura T, Hamakubo T, Sakai J, Kodama T, Yoshida T, Aburatani H and Osawa T
    • Journal Title

      Cell Rep

      Volume: 18 Pages: 2228-2242

    • DOI
      10.1016/j.celrep.2017.02.006
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-26710005, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K14605, KAKENHI-PROJECT-16H06390, KAKENHI-PROJECT-15H05325
  • [Journal Article] ddiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells.2017

    • Author(s)
      Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji E, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada K, Ogawa T, Tojo A, Miyano S, Gotoh N.
    • Journal Title

      Oncogene

      Volume: 36 Pages: 1276-1286

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15H04294
  • [Journal Article] Addiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells.2017

    • Author(s)
      Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji EI, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada KI, Ogawa T, Tojo A, Miyano S, Gotoh N
    • Journal Title

      Oncogene.

      Volume: 36(9) Pages: 1276-1286

    • DOI
      10.1038/onc.2016.293
    • Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H06391, KAKENHI-PROJECT-16J40231, KAKENHI-PROJECT-15K14381, KAKENHI-PROJECT-16K08672
  • [Journal Article] Long non-coding RNA JHDM1D-AS1 promotes tumor growth by regulating angiogenesis in response to nutrient starvation2017

    • Author(s)
      Kondo A, Nonaka A, Shimamura T, Yamamoto S, Yoshida T, Kodama T, Aburatani H, Osawa T
    • Journal Title

      Molecular and Cellular Biology

      Volume: 37

    • DOI
      10.1128/mcb.00125-17
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K14987, KAKENHI-PROJECT-26710005, KAKENHI-PUBLICLY-16H01567, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K14605
  • [Journal Article] GIMLET: Identifying biological modulators in context-specific gene regulation using local energy statistics2017

    • Author(s)
      Shimamura Teppei, Matsui Yusuke, Kajino Taisuke, Takahashi Takashi, Miyano Satoru
    • Journal Title

      Proceedings of CIBB2017

      Volume: 1 Pages: 1-6

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Journal Article] Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p142017

    • Author(s)
      Takahashi Y, Sugimachi K, Yamamoto K, Niida A, Shimamura T, Sato T, Watanabe M, Tanaka J, Kudo S, Sugihara K, Hase K, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Suzuki Y, Miyano S, Mori M, Mimori K
    • Journal Title

      Cancer Sci

      Volume: 108(11) Pages: 2239-2247

    • DOI
      10.1111/cas.13391
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10168
  • [Journal Article] PRC2-mediated transcriptomic alterations at the embryonic stage govern tumorigenesis and clinical outcome in MYCN-driven neuroblastoma.2017

    • Author(s)
      2.Tsubota S, Kishida S, Shimamura T, Ohira M, Yamashita S, Cao D, Kiyonari S, Ushijima T, Kadomatsu K.
    • Journal Title

      Cancer Research

      Volume: 77 Pages: 5259-5271

    • DOI
      10.1158/0008-5472.can-16-3144
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16K08617, KAKENHI-PROJECT-17K10131, KAKENHI-PROJECT-16H05139, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18442
  • [Journal Article] High-resolution copy number variation analysis of schizophrenia in Japan2017

    • Author(s)
      Kushima I, Aleksic B, Nakatochi M, Shimamura T, Shiino T, Yoshimi A, Kimura H, Takasaki Y, Wang C, Xing J, Ishizuka K, Oya-Ito T, Nakamura Y, Arioka Y, Maeda T, Yamamoto M, Yoshida M, Noma H, Hamada S, Morikawa M, Uno Y, Okada T, Iidaka T, Iritani S, Yamamoto T,
    • Journal Title

      Molecular psychiatry

      Volume: 22 Pages: 1-11

    • DOI
      10.1038/mp.2016.88
    • Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-ORGANIZER-24116001, KAKENHI-PLANNED-24116002, KAKENHI-ORGANIZER-25117001, KAKENHI-PROJECT-25253074, KAKENHI-PROJECT-16H05375, KAKENHI-PROJECT-16H05380, KAKENHI-PROJECT-26461742, KAKENHI-PROJECT-15K14973, KAKENHI-PROJECT-15K19720, KAKENHI-PROJECT-15K09802, KAKENHI-PROJECT-24500986, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K08421, KAKENHI-PROJECT-17K10295, KAKENHI-PLANNED-25117010, KAKENHI-PROJECT-16K15559
  • [Journal Article] Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia2017

    • Author(s)
      Seki M, Kimura S, Isobe T, Yoshida K, (13 authors), Masuda K, Kawamoto H, Ohki K, Kato M, Arakawa Y, Koh K, Hanada R, Moritake H, Akiyama M, Kobayashi R, Deguchi T, Hashii Y, Imamura T, Sato A, Kiyokawa N, Oka A, Hayashi Y, Takagi M, Manabe A, Ohara A, Horibe K, Sanada M, Iwama A, Mano H, Miyano S, Ogawa S, Takita J
    • Journal Title

      Nature genetis

      Volume: 49 Pages: 1274-1281

    • DOI
      10.1038/ng.3900
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K09870, KAKENHI-PROJECT-17K10130, KAKENHI-PROJECT-17K10136, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02544, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-17H04234, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15498, KAKENHI-PROJECT-16K19574, KAKENHI-PROJECT-17K16242
  • [Journal Article] phyC: Clustering cancer evolutionary trees2017

    • Author(s)
      Matsui Y, Niida A, Uchi R, Mimori K, Miyano S, Shimamura T:
    • Journal Title

      PLoS Comput Biol

      Volume: 13(5) Pages: 1005509-1005509

    • DOI
      10.1371/journal.pcbi.1005509
    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-16K16146, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01572, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K12139
  • [Journal Article] ER Stress Signaling Promotes the Survival of Cancer “Persister Cells” Tolerant to EGFR Tyrosine Kinase Inhibitors2017

    • Author(s)
      Terai Hideki、Kitajima Shunsuke、Potter Danielle S.、Matsui Yusuke、et al.
    • Journal Title

      Cancer Research

      Volume: 78 Pages: 1044-1057

    • DOI
      10.1158/0008-5472.can-17-1904
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16K16146, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15K12139
  • [Journal Article] Tumor subclonal progression model for cancer hallmark acquisition2017

    • Author(s)
      Matsui Yusuke, Miyano Satoru, Shimamura Teppei
    • Journal Title

      Proceedings of CIBB2017

      Volume: 1 Pages: 1-6

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Journal Article] Aberrant Methylation of FOXE1 Contributes to a Poor Prognosis for Patients with Colorectal Cancer2016

    • Author(s)
      Sugimachi K, Matsumura T, Shimamura T, Hirata H, Uchi R, Ueda M, Sakimura S, Iguchi T, Eguchi H, Masuda T, Morita K, Takenaka K, Maehara Y, Mori M, Mimori K.
    • Journal Title

      Annals of Surgical Oncology

      Volume: 23(12) Pages: 3948-3955

    • DOI
      10.1245/s10434-016-5289-x
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
  • [Journal Article] A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models2016

    • Author(s)
      Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S
    • Journal Title

      Computational Statistics and Data Analysis

      Volume: 94 Pages: 63-74

    • DOI
      10.1016/j.csda.2015.08.003
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H06008, KAKENHI-PROJECT-25730173
  • [Journal Article] Integrated multiregional analysis proposing a new model of colorectal cancer evolution2016

    • Author(s)
      R. Uchi (他40名, 山本36番目)
    • Journal Title

      PLoS Genet

      Volume: 12 Pages: 1005778-1005778

    • DOI
      10.1371/journal.pgen.1005778
    • Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10150, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25462038, KAKENHI-PROJECT-25462070, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26861003, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10170, KAKENHI-PROJECT-15H05325
  • [Journal Article] NECAB3 promotes activation of hypoxia-inducible factor-1 during normoxia and enhances tumourigenicity of cancer cells.2016

    • Author(s)
      1.Nakaoka HJ, Hara T, Yoshino S, Kanamori A, Matsui Y, Shimamura T, Sato H, Murakami Y, Seiki M, Sakamoto T
    • Journal Title

      Scientific Reports,

      Volume: 6 Pages: 0-0

    • DOI
      10.1038/srep22784
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15K06829, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-24591313, KAKENHI-PROJECT-25460382, KAKENHI-PROJECT-26640121, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25290051, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H05325
  • [Journal Article] D3M: detection of differential distributions of methylation levels2016

    • Author(s)
      Matsui Y, Mizuta M, Miyano S, Shimamura T
    • Journal Title

      Bioinformatics

      Volume: 印刷中 Pages: 2248-2255

    • DOI
      10.1093/bioinformatics/btw138
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-25540008, KAKENHI-PROJECT-15K12139, KAKENHI-PUBLICLY-16H01572, KAKENHI-PROJECT-15H05325
  • [Journal Article] Genomic landscape of esophageal squamous cell carcinoma a Japanese population2016

    • Author(s)
      Sawada G, Niida A, Uchi R, Hirata H, Shimamura T, (38 authors), Mimori K
    • Journal Title

      Gastroenterology.

      Volume: 150(5) Pages: 1049-1051

    • DOI
      10.1053/j.gastro.2016.01.035
    • Peer Reviewed / Open Access / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496, KAKENHI-PROJECT-15K05577
  • [Journal Article] Comparison of chemotherapeutic agents as a myeloablative conditioning with TBI for pediatric ALL: a study from the pediatric ALL working group of the JSHCT.2015

    • Author(s)
      Seki M, Nishimura R, Yoshida K, Shimamura T, Shiraishi Y, Sato Y, Kato M, Chiba K, Tanaka H, Hoshino N, Nagae G, Shiozawa Y, Okuno Y, Hosoi H, Tanaka Y, Okita H, Miyachi M, Souzaki R, Taguchi T, Koh K, Hanada R, Kato K, Nomura Y, Akiyama M, Oka A, Igarashi T, Miyano S, Aburatani H, Hayashi Y, Ogawa S, Takita J.
    • Journal Title

      Pediatr Blood Cancer.

      Volume: 6 Pages: 1844-50

    • DOI
      10.1038/ncomms8557
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-26461566, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-25461611, KAKENHI-PROJECT-25670482, KAKENHI-PROJECT-26670493, KAKENHI-PROJECT-26670766, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26293242
  • [Journal Article] High performance computing of a fusion gene detection pipeline on the K computer2015

    • Author(s)
      Ito S, Shiraishi Y, Shimamura T, Chiba K, Miyano S
    • Journal Title

      BIBM

      Volume: 2015 Pages: 1441-1447

    • DOI
      10.1109/bibm.2015.7359888
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015

    • Author(s)
      Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T
    • Journal Title

      MC Syst Biol

      Volume: 9(1) Pages: 14-14

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated molecular analysis of adult T-cell leukemia/lymphoma.2015

    • Author(s)
      Kataoka K, Nagata Y, Kitanaka A, Shiraishi Y, Shimamura T, Yasunaga J, Totoki Y, Chiba K, Sato-Otsubo A, Nagae G, et al.
    • Journal Title

      Nat Genet

      Volume: 47(11) Pages: 1304-1315

    • DOI
      10.1038/ng.3415
    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-15K09479, KAKENHI-PROJECT-15K09507, KAKENHI-PROJECT-26460554, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-25250020, KAKENHI-PROJECT-26893127, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-25293219
  • [Journal Article] Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks2015

    • Author(s)
      Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T.
    • Journal Title

      BMC Systems Biology

      Volume: 9 Pages: 14-14

    • DOI
      10.1186/s12918-015-0154-2
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24300111, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-25730173
  • [Journal Article] Mutational landscape and clonal architecture in grade-II/III gliomas.2015

    • Author(s)
      Suzuki H, Aoki K, Natsume A, Ogawa S. et al.
    • Journal Title

      Nat Genet

      Volume: 47 Pages: 458-468

    • DOI
      10.1038/ng.3273
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PLANNED-22134006, KAKENHI-PLANNED-23107010, KAKENHI-PROJECT-24390341, KAKENHI-PROJECT-15K10337, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K19964, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26640088, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25861268, KAKENHI-PROJECT-25290048
  • [Journal Article] An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma.2015

    • Author(s)
      Sawada G, Niida A, Hirata H, Komatsu H, Uchi R, Shimamura T, Takahashi Y, Kurashige J, Matsumura T, Ueo H, Takano Y, Ueda M, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Yamasaki M, Tanaka F, Tachimori Y, Kajiyama Y, Natsugoe S, Fujita H, Tanaka Y, Calin G, Miyano S, Doki Y, Mori M, Mimori K
    • Journal Title

      PLoS One.

      Volume: 10(10)

    • DOI
      10.1371/journal.pone.0139808
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
  • [Journal Article] Elevated beta-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs.2015

    • Author(s)
      Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N
    • Journal Title

      Scientific Reports

      Volume: 5 Pages: 13076-13076

    • DOI
      10.1038/srep13076
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15K18426, KAKENHI-PROJECT-15K20965, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-26640072, KAKENHI-PROJECT-25730173
  • [Journal Article] Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker2014

    • Author(s)
      Park H, Shimamura T, Miyano S, Imoto S
    • Journal Title

      PLoS One

      Volume: 9(1)

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal2014

    • Author(s)
      Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K.
    • Journal Title

      Ann Surg Oncol

      Volume: 4 Pages: 640-647

    • DOI
      10.1245/s10434-014-3740-4
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-24592005, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
  • [Journal Article] Allelic imbalance at an 8q24 oncogenic SNP is involved in activating MYC in human colorectal cancer2014

    • Author(s)
      Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K
    • Journal Title

      Ann Surg Oncol.

      Volume: 21 Pages: 3468-3476

    • DOI
      10.1245/s10434-013-3468-6
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-24591984, KAKENHI-PROJECT-25730173
  • [Journal Article] Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma.2014

    • Author(s)
      Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J
    • Journal Title

      Cancer Res.

      Volume: 74 Pages: 2742-2749

    • DOI
      10.1158/0008-5472.can-13-2470
    • Peer Reviewed / Open Access / Acknowledgement Compliant
    • Data Source
      KAKENHI-PROJECT-23390269, KAKENHI-PROJECT-25253095, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26293242, KAKENHI-PROJECT-26670493
  • [Journal Article] Allelic Imbalance at an 8q24 Oncogenic SNP is involved in activating MYC in human colorectal cancer2014

    • Author(s)
      Sugimachi K, Niida A, Yamamoto K, Shimamura T, Imoto S, Iinuma H, Shinden Y, Eguchi H, Sudo T, Watanabe M, Tanaka J, Kudo S, Hase K, Kusunoki M, Yamada K, Shimada Y, Sugihara K, Maehara Y, Miyano S, Mori M, Mimori K
    • Journal Title

      Ann Surg Oncol

      Volume: 21 Suppl 4 Pages: 515-521

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma2014

    • Author(s)
      Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J
    • Journal Title

      Cancer Res.

      Volume: 74(10) Pages: 2742-2749

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated molecular analysis of clear-cell renalcell carcinoma2014

    • Author(s)
      Sato Y, Yoshida K
    • Journal Title

      Nat Genet

      Volume: 45 Pages: 860-7

    • DOI
      10.1038/ng.2699
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134008, KAKENHI-PLANNED-24112006, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24700272, KAKENHI-PROJECT-25291023, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521
  • [Journal Article] Loss of CDCP1 expression promotes invasiveness and poor prognosis in esophageal squamous cell carcinoma2014

    • Author(s)
      Sawada G, Takahashi Y, Niida A, Shimamura T, Kurashige J, Matsumura T, Ueo H, Uchi R, Takano Y, Ueda M, Hirata H, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Miyano S, Doki Y, Mori M, Mimori K
    • Journal Title

      Ann Surg Oncol

      Volume: 21 Suppl 4 Pages: 640-647

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA12014

    • Author(s)
      Barclay, S.S., Tamura, T., Ito H., Fujita, K., Tagawa, K., Shimamura, T., Katsuta, A., Shiwaku, H., Sone, M., Imoto, S., Miyano, S. and Okazawa, H.
    • Journal Title

      Hum Mol Genet.

      Volume: 23 Pages: 1345-1364

    • DOI
      10.1093/hmg/ddt524
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-ORGANIZER-22110001, KAKENHI-PLANNED-22110002, KAKENHI-PROJECT-23500401, KAKENHI-PROJECT-24500378, KAKENHI-PROJECT-24700374, KAKENHI-PROJECT-25730173
  • [Journal Article] Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker2014

    • Author(s)
      Park H, Shimamura T, Miyano S, Imoto S
    • Journal Title

      PLoS One

      Volume: 9(10)

    • DOI
      10.1371/journal.pone.0108990
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2013

    • Author(s)
      Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(8) Pages: 860-867

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] The tumor-suppressive miR-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinoma2013

    • Author(s)
      Furuta M
    • Journal Title

      PLOS One

      Volume: 8

    • DOI
      10.1371/journal.pone.0060155
    • Peer Reviewed
    • Data Source
      KAKENHI-ORGANIZER-22130001, KAKENHI-PLANNED-22134002, KAKENHI-PROJECT-22240090, KAKENHI-PROJECT-23390077, KAKENHI-PROJECT-25250019, KAKENHI-PROJECT-25253081, KAKENHI-PROJECT-25640062, KAKENHI-PROJECT-25730173, KAKENHI-PLANNED-22134004
  • [Journal Article] Inhibition of histone demethylase JMJD1A improves anti-angiogenic therapy and reduces tumor associated macrophages2013

    • Author(s)
      Osawa T, Tsuchida R, Muramatsu M, Shimamura T, Wang F, Suehiro JI, Kanki Y, Wada Y, Yuasa Y, Aburatani H, Miyano S, Minami T, Kodama T, Shibuya M.
    • Journal Title

      Cancer Res.

      Volume: 73(10) Pages: 3019-3028

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms2013

    • Author(s)
      Kon A, Shih LY, Sanada M, Shiraishi Y, Okuno Y, Nagae G, Nishimoto A, Nowak D, Sato Y, Shimamura T, Tanaka H, Chiba K, Yamaguchi T, Otsu M, Obara N, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(10) Pages: 1232-1237

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis2013

    • Author(s)
      Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M
    • Journal Title

      Cancer Res.

      Volume: 73(7) Pages: 2059-2069

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recurrent mutations in multiple components of the cohesin complex inmyeloid neoplasms2013

    • Author(s)
      Kon A, Yoshida K
    • Journal Title

      Nature Genetics

      Volume: 45 Pages: 1232-1237

    • DOI
      10.1038/ng.2731
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134003, KAKENHI-PLANNED-22134006, KAKENHI-PROJECT-22221009, KAKENHI-PLANNED-23106004, KAKENHI-PROJECT-23249052, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24249056, KAKENHI-PROJECT-24390242, KAKENHI-PROJECT-24659458, KAKENHI-PROJECT-25290065, KAKENHI-PROJECT-25461408, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25670471, KAKENHI-PROJECT-25670489, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521
  • [Journal Article] Inhibition of histone demethylase JMJD1A improves anti-angiogenic therapy and reduces tumor-associated macrophages2013

    • Author(s)
      Shimamura T, Wang F, Suehiro J, Kanki Y, Wada Y, Yuasa Y, Aburatani H, Miyano S, Minami T, Kodama T, Shibuya M
    • Journal Title

      Cancer Research

      Volume: 73 Pages: 3019-28

    • DOI
      10.1158/0008-5472.can-12-3231
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23300342, KAKENHI-PROJECT-23701047, KAKENHI-PUBLICLY-24116509, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24650609, KAKENHI-PROJECT-24700969, KAKENHI-PROJECT-24710227, KAKENHI-PUBLICLY-25118505, KAKENHI-PUBLICLY-25125707, KAKENHI-PUBLICLY-25134706, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25893063
  • [Journal Article] Plastin3 is a novel marker for circulating tumor cells undergoing the epithelial-mesenchymal transition and is associated with colorectal cancer prognosis2013

    • Author(s)
      Yokobori T, Iinuma H, Shimamura T, Imoto S, Sugimachi K, Ishii H, Iwatsuki M, Ota D, Ohkuma M, Iwaya T, Nishida N, Kogo R, Sudo T, Tanaka F, Shibata K, Toh H, Sato T, Barnard GF, Fukagawa T, Yamamoto S, Nakanishi H, Sasaki S, Miyano S, Watanabe T, Kuwano H, Mimori K, Pantel K, Mori M.
    • Journal Title

      Cancer Res.

      Volume: 1; 73(7) Pages: 2059-2069

    • DOI
      10.1158/0008-5472.can-12-0326
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23591937, KAKENHI-PLANNED-24108006, KAKENHI-PROJECT-24591984, KAKENHI-PROJECT-25430111, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25730173
  • [Journal Article] Statistical model-based testing to evaluate the recurrence of genomic aberrations2012

    • Author(s)
      Niida A, Imoto S, Shimamura T, Miyano S
    • Journal Title

      Bioinformatics

      Volume: 28(12)

    • DOI
      10.1093/bioinformatics/bts203
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Epidermal growth factor receptor tyrosine kinase defines criticalprognostic genes of stage I lung adenocarcinoma2012

    • Author(s)
      後藤 典子
    • Journal Title

      PLoS One

      Volume: 7

    • DOI
      10.1371/journal.pone.0043923
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130009, KAKENHI-PROJECT-22300099, KAKENHI-PROJECT-23390062, KAKENHI-PLANNED-22134004
  • [Journal Article] Identifying Gene pathways associated with cancer characteristics via sparse statistical methods2012

    • Author(s)
      Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 9(4) Pages: 966-972

    • DOI
      10.1109/tcbb.2012.48
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] SiGN : large-scale gene network estimation environment for high performance computing2011

    • Author(s)
      Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S
    • Journal Title

      Genome Informatics

      Volume: 25 Pages: 40-52

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Inferring contagion in regulatory networks2011

    • Author(s)
      Fujita A, Sato JR, Demas MAA, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar, MC, Miyano S
    • Journal Title

      IEEE/ACM Transactions on Computational Biology and Bioinformatics

      Volume: 8(2) Pages: 570-576

    • DOI
      10.1109/tcbb.2010.40
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells2011

    • Author(s)
      Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N
    • Journal Title

      Am J Cancer Res

      Volume: 1(7) Pages: 828-833

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition2011

    • Author(s)
      Shimamura, T., Imoto, S., Shimada, Y., Hosono, Y., Niida, A., Nagasaki, M., Yamaguchi, R., Takahashi, T., Miyano, S
    • Journal Title

      PLoS ONE

      Volume: 6

    • DOI
      10.1371/journal.pone.0020804
    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21249037, KAKENHI-PLANNED-22134004, KAKENHI-PLANNED-22134005
  • [Journal Article] Model-free unsupervised gene set screening based on information enrichment in expression profiles2010

    • Author(s)
      Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Fujita, A., Shimamura, T., Miyano, S.
    • Journal Title

      Bioinformatics

      Volume: 26(24) Pages: 3090-3097

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning2010

    • Author(s)
      Kawano, S., Shimamura, T., Niida, A., Imoto, S., Yamaguchi, R., Nagasaki, M., Yoshida, R., Print, C., Miyano, S.
    • Journal Title

      Proc.IEEE 10th International Symposium on Bioinformatics & Bioengineering

      Pages: 253-258

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Inferring dynamic gene networks under varying conditions for transcriptomic network comparison2010

    • Author(s)
      Shimamura, T., Imoto, S., Yamaguchi, R., Nagasaki, M., Miyano, S.
    • Journal Title

      Bioinformatics

      Volume: 26(8) Pages: 1064-1072

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Collocation-based sparse estimation for constructing dynamic gene networks2010

    • Author(s)
      Shimamura, T., Imoto, S., Nagasaki, M., Yamauchi, M., Yamaguchi, R., Fujita, A., Tamada, Y, Gotoh, N., Miyano, S.
    • Journal Title

      Genome Informatics

      Volume: 24 Pages: 164-178

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Presentation] 生命科学におけるビッグデータ駆動型科学の実践と将来2017

    • Author(s)
      島村徹平
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] システム生物学的アプローチに基づくオミックス統合解析2016

    • Author(s)
      島村徹平
    • Organizer
      第39回日本分子生物学会年会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H05325
  • [Presentation] Identifying biological modulators using local energy statistics2016

    • Author(s)
      Teppei Shimamura
    • Organizer
      CMStatistics 2016 (ERCIM2016)
    • Place of Presentation
      セビリア大学(スペイン、セビリア)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] マルチオミックス情報に基づくがんのモジュレーター因子の網羅的探索2016

    • Author(s)
      島村徹平
    • Organizer
      第5回生命医薬情報学連合大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H05325
  • [Presentation] システム生物学的アプローチに基づくオミックス統合解析2016

    • Author(s)
      島村徹平
    • Organizer
      第39回分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] マルチオミックス情報に基づくがんのモジュレーター因子の網羅的探索2016

    • Author(s)
      島村徹平
    • Organizer
      第5回生命医薬情報学連合大会
    • Place of Presentation
      東京国際交流館プラザ平成(東京都江東区)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] 局所距離相関に基づくモジュレーター因子の網羅的探索法2016

    • Author(s)
      島村徹平
    • Organizer
      2016年度統計関連学会連合大会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] Analysis of Big Data - Genome Data -2016

    • Author(s)
      島村徹平
    • Organizer
      実世界データ循環学サマースクール2016
    • Place of Presentation
      ハノイ工科大学(ベトナム、ハノイ)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] Bayesian integrated analysis of chromatin interaction maps2015

    • Author(s)
      Shimamura T
    • Organizer
      Pacific Symposium on Biocomputing 2015
    • Place of Presentation
      The Fairmont Orchid, Hawaii (アメリカ、ハワイ州)
    • Year and Date
      2015-01-06
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] がん悪性化に寄与する発現制御調整因子のイン・シリコ探索2015

    • Author(s)
      島村徹平
    • Organizer
      がんゲノムの情報と数理
    • Place of Presentation
      東京大学医科学研究所(東京都港区)
    • Year and Date
      2015-09-30
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] がんの俯瞰的理解のための統合的統計モデリング2015

    • Author(s)
      島村徹平
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-02
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] がん悪性化に寄与する発現制御調整因子のイン・シリコ探索2015

    • Author(s)
      島村徹平
    • Organizer
      がんゲノムの情報と数理
    • Place of Presentation
      東京大学医科学研究所(東京都港区)
    • Year and Date
      2015-09-30
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] がんの俯瞰的理解のための統合的統計モデリング2015

    • Author(s)
      島村徹平
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Invited
    • Data Source
      KAKENHI-PROJECT-15H05325
  • [Presentation] がんの俯瞰的理解のための統合的統計モデリング2015

    • Author(s)
      島村徹平
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-02
    • Invited
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] Discovering modulators of gene regulation by local energy statistics2015

    • Author(s)
      Teppei Shimamura
    • Organizer
      IFCS2015
    • Place of Presentation
      ボローニャ大学(イタリア、ボローニャ)
    • Year and Date
      2015-07-07
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K12139
  • [Presentation] オミックスビッグデータ解析の現状と課題2015

    • Author(s)
      島村徹平
    • Organizer
      平成26年度「複雑データの解析法に関する研究会」
    • Place of Presentation
      統計数理研究所(東京都立川市)
    • Year and Date
      2015-02-19
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] Discovering modulators of gene regulation by local energy statistics2015

    • Author(s)
      Teppei Shimamura
    • Organizer
      IFCS2015
    • Place of Presentation
      ボローニャ大学(イタリア、ボローニャ)
    • Year and Date
      2015-07-07
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] Integrative systems understanding of cancer metabolism with constraint-based modeling of metabolic flux2014

    • Author(s)
      島村徹平
    • Organizer
      第73回日本癌学会学術総会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2014-09-26
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] オミクス解析におけるグラフィックス2014

    • Author(s)
      島村徹平
    • Organizer
      日本計算機統計学会第28回シンポジウム
    • Place of Presentation
      沖縄科学技術大学院大学(沖縄県恩納村)
    • Year and Date
      2014-11-15
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] Systems analysis of cancer metabolism with constraint-based model of metabolic flux2014

    • Author(s)
      島村徹平
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2014-10-17
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] Hierarchical Bayes model-based analysis of chromatin interaction maps2013

    • Author(s)
      Shimamura T
    • Organizer
      Genome Informatics
    • Place of Presentation
      Cold Spring Harbor Laboratory, NY, USA
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] Accurate detection of chromatin interactions from ChIA-PET sequencing data with a hierarchical Bayes model2013

    • Author(s)
      Shimamura T
    • Organizer
      Clinical Genomics and Informatics Europe
    • Place of Presentation
      Sheraton Hotel and Spa, Lisbon, Portugal
    • Data Source
      KAKENHI-PROJECT-25730173
  • [Presentation] 抗がん剤感受性予測に向けてのバイオインフォマティクスの現状と課題

    • Author(s)
      島村徹平
    • Organizer
      日本計算機統計学会第27回大会
    • Place of Presentation
      青森県弘前大学
    • Invited
    • Data Source
      KAKENHI-PROJECT-25730173
  • 1.  SHIRAISHI Yuichi (70516880)
    # of Collaborated Projects: 3 results
    # of Collaborated Products: 10 results
  • 2.  GOTOH Noriko (10251448)
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  • 3.  MIYANO SATORU (50128104)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 36 results
  • 4.  IMOTO Seiya (10345027)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 22 results
  • 5.  YAMAGUCHI Rui (90380675)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 14 results
  • 6.  TAMADA Yoshinori (80435495)
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  • 7.  東條 有伸 (00211681)
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  • 8.  岡本 康司 (80342913)
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  • 9.  NAGASAKI Masao (90396862)
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  • 10.  HIGUCHI Tomoyuki (70202273)
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  • 11.  KAYANO Mitsunori (20590095)
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  • 12.  Osawa Tsuyoshi (50567592)
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  • 13.  KANKI Yasuharu (00534869)
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  • 14.  PARK HEEWON (70756642)
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  • 15.  新井田 厚司 (00772493)
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  • 16.  片山 琴絵 (40581195)
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  • 17.  張 耀中 (60817138)
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  • 18.  鈴木 穣 (40323646)
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  • 19.  多田 敬一郎 (80271568)
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  • 20.  SUGIMACHI Keishi
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  • 21.  SUDO Tomoya
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  • 22.  TAKEDA Masafumi
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  • 23.  ABURATANI Hiroyuki
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  • 24.  YAMASHITA Jun
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  • 25.  SUEHIRO Junichi
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  • 26.  HIDE Takuichiro
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  • 27.  HIDESHI Ishii
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  • 28.  MATSYBARA Daisuk
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  • 29.  SANADA Masashi
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  • 30.  SATO Aiko
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    # of Collaborated Products: 1 results
  • 31.  IRITANI Syuji
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  • 32.  ALEKSIC Branko
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  • 33.  KAWASAKI Yoshihiro
    # of Collaborated Projects: 0 results
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  • 34.  WATANABE Shunji
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  • 35.  YOSHIDA Ryo
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  • 36.  前原 喜彦
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  • 37.  江口 英利
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  • 38.  平田 秀成
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 4 results
  • 39.  永江 玄太
    # of Collaborated Projects: 0 results
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  • 40.  滝田 順子
    # of Collaborated Projects: 0 results
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  • 41.  西村 力
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  • 42.  林 泰秀
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  • 43.  加藤 元博
    # of Collaborated Projects: 0 results
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  • 44.  三森 功士
    # of Collaborated Projects: 0 results
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  • 45.  酒井 寿郎
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 46.  稲澤 譲治
    # of Collaborated Projects: 0 results
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  • 47.  小崎 健一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 48.  田中 真二
    # of Collaborated Projects: 0 results
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  • 49.  山本 健
    # of Collaborated Projects: 0 results
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  • 50.  飯沼 久恵
    # of Collaborated Projects: 0 results
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  • 51.  井口 友宏
    # of Collaborated Projects: 0 results
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  • 52.  岩谷 岳
    # of Collaborated Projects: 0 results
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  • 53.  渡辺 聡明
    # of Collaborated Projects: 0 results
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  • 54.  山田 英樹
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  • 55.  南 敬
    # of Collaborated Projects: 0 results
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  • 56.  和田 洋一郎
    # of Collaborated Projects: 0 results
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  • 57.  角田 達彦
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  • 58.  藤本 明洋
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  • 59.  宮 冬樹
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  • 60.  嘉村 巧
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  • 61.  小川 誠司
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  • 62.  中村 英夫
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  • 63.  青木 恒介
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  • 64.  竹内 一郎
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  • 65.  若林 俊彦
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  • 66.  夏目 敦至
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  • 67.  坂本 毅治
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  • 68.  佐藤 博
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  • 69.  村上 善則
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  • 70.  森 正樹
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  • 71.  赤司 浩一
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  • 72.  下野 洋平
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  • 73.  北中 明
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  • 74.  安永 純一朗
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  • 75.  永田 安伸
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  • 76.  松岡 雅雄
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  • 77.  阿部 竜也
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  • 78.  鈴木 啓道
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  • 79.  鈴木 孝禎
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  • 80.  近藤 豊
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  • 81.  本村 和也
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  • 82.  岡澤 均
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  • 83.  曽根 雅紀
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  • 84.  田村 拓也
    # of Collaborated Projects: 0 results
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  • 85.  田川 一彦
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  • 86.  水田 正弘
    # of Collaborated Projects: 0 results
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  • 87.  石川 俊平
    # of Collaborated Projects: 0 results
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  • 88.  中内 啓光
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  • 89.  小原 直
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  • 90.  大津 真
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  • 91.  佐藤 秀明
    # of Collaborated Projects: 0 results
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  • 92.  岸田 聡
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 93.  市川 美紀
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 94.  門松 健治
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    # of Collaborated Products: 1 results
  • 95.  清成 信一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 96.  加藤 忠史
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 97.  吉川 武男
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 98.  豊田 倫子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 99.  尾崎 紀夫
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 100.  糸川 昌成
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 101.  橋本 亮太
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 102.  久島 周
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 103.  伊藤 友子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 104.  吉見 陽
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 105.  増田 喬子
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 106.  岩間 厚志
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 107.  昆 彩奈
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 108.  湯浅 保仁
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 109.  土岐 祐一郎
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 110.  田中 文明
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 111.  中西 速夫
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 112.  中田 飛鳥
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 113.  高橋 隆
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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