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shiraisi yuichi  白石 友一

… Alternative Names

SHIRAISHI Yuichi  白石 友一

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Researcher Number 70516880
Other IDs
  • ORCIDhttps://orcid.org/0000-0001-6144-5845
Affiliation (Current) 2022: 国立研究開発法人国立がん研究センター, 研究所, 分野長
Affiliation (based on the past Project Information) *help 2021 – 2022: 国立研究開発法人国立がん研究センター, 研究所, 分野長
2018 – 2020: 国立研究開発法人国立がん研究センター, 研究所, ユニット長
2013 – 2017: 東京大学, 医科学研究所, 助教
2012 – 2013: 東京大学, 医科学研究所, 特任助教
2010: The University of Tokyo, 医科学研究所, 特任研究員
2009: The Institute of Physical and Chemical Research, 細胞システムモデル化研究チーム, 特別研究員
Review Section/Research Field
Principal Investigator
Statistical science / Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics
Except Principal Investigator
Complex systems / Gastroenterology / Tumor biology / Medium-sized Section 50:Oncology and related fields / Medium-sized Section 48:Biomedical structure and function and related fields / Basic Section 53030:Respiratory medicine-related / Basic Section 63020:Radiation influence-related
Keywords
Principal Investigator
がんゲノム / スプライシング / ゲノム / 統計科学 / 機械学習 / トランスクリプトーム / 大規模データ解析 / ゲノム変異 / クラウド / 統計的学習理論 … More / スパース正則化学習 / 多値判別 / 遺伝子発現 / 相乗効果 / バイオインフォマティクス / 統計的検定理論 / マルコフ連鎖モンテカルロ / ensemble learning / stacking / groun lasso / gene regulatory network / state space model / ベイズ統計学 / 次世代シークエンス解析 / 統計数学 / 癌 / パターンマイニング / 可視化 / 統計手法 / 変異シグナチャー / 統計モデル / トピックモデル / 最適化 / がん / 後天的変異 / 公共データ / スプライシング異常 … More
Except Principal Investigator
がん / バイオインフォマティクス / システム生物学 / 統計的モデリング / 遺伝統計学 / ゲノム科学 / スーパーコンピュータ / 遺伝子ネットワーク / シークエンス解析 / ゲノム / 肝がん / 病原体 / 肝炎 / シークエンス / 人工知能 / がん微小環境 / 低pH / がん代謝 / 転写・代謝制御 / 転写制御 / 悪性リンパ腫 / CRISPR / 全ゲノムシークエンス / 横断的オミクス解析 / 細胞組織特異性 / eQTL効果 / バイインフォマティクス / 小細胞肺癌 / 酸化ストレス応答経路 / Keap1-Nrf2経路 / 非小細胞肺癌 / 抗癌剤耐性 / 酸化ストレス経路 / スプライシング / DNA複製ストレス / ATR / ゲノム不安定性 / クロマチン Less
  • Research Projects

    (13 results)
  • Research Products

    (125 results)
  • Co-Researchers

    (129 People)
  •  Cellular survival strategy through ATR-dependent DNA replication stress tolerance

    • Principal Investigator
      塩谷 文章
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 63020:Radiation influence-related
    • Research Institution
      National Cancer Center Japan
  •  大規模トランスクリプトームからの自律的知能獲得システム基盤の開発Principal Investigator

    • Principal Investigator
      白石 友一
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      National Cancer Center Japan
  •  小細胞肺癌における酸化ストレス応答系の破綻機序の解明

    • Principal Investigator
      光石 陽一郎
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 53030:Respiratory medicine-related
    • Research Institution
      Juntendo University
  •  Elucidation of disease biology and tissue specificity by trans-layer omics analysis and whole-genome sequencing

    • Principal Investigator
      Okada Yukinori
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 48:Biomedical structure and function and related fields
    • Research Institution
      Osaka University
  •  Elucidation of the genetic basis underlying lymphomagenesis by CRISPR library screening

    • Principal Investigator
      Kataoka Keisuke
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 50:Oncology and related fields
    • Research Institution
      National Cancer Center Japan
  •  Development of methods for comprehensive characterization of somatic variants causing transcription aberrations and their application to genomic medicinePrincipal Investigator

    • Principal Investigator
      Yuichi Shiraishi
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      National Cancer Center Japan
  •  Understanding mechanism of acidic pH induced tumor progression

    • Principal Investigator
      Osawa Tsuyoshi
    • Project Period (FY)
      2016 – 2017
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Tumor biology
    • Research Institution
      The University of Tokyo
  •  Development of statistical methods for large scale somatic mutation data miningPrincipal Investigator

    • Principal Investigator
      Yuichi Shiraishi
    • Project Period (FY)
      2015 – 2017
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      The University of Tokyo
  •  Neodimensional exploration for cancer systems by supercomputing and innovative information technology

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Pathogen detetcion in liver cancer by sequencing analysis

    • Principal Investigator
      NAKAGAWA Hidewaki
    • Project Period (FY)
      2013 – 2014
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Gastroenterology
    • Research Institution
      The Institute of Physical and Chemical Research
  •  Statistical method for understanding cancer genome development and pathogenesisPrincipal Investigator

    • Principal Investigator
      SHIRAISHI Yuichi
    • Project Period (FY)
      2012 – 2013
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
  •  Development of Systems Cancer Research by Computation and Simulation

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2010 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo
  •  Statistical and game theoretical approach for combining modelsPrincipal Investigator

    • Principal Investigator
      SHIRAISHI Yuichi
    • Project Period (FY)
      2009 – 2010
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Statistical science
    • Research Institution
      The University of Tokyo
      The Institute of Physical and Chemical Research

All 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 Other

All Journal Article Presentation Book

  • [Book] 実験医学2022

    • Author(s)
      白石友一
    • Total Pages
      5
    • Publisher
      クラウドを使ったゲノム解析環境の構築
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Book] 「がんゲノムにおけるスプライシング変異の検出」、医学のあゆみ 2675巻 5号2020

    • Author(s)
      白石友一
    • Total Pages
      7
    • Publisher
      医歯薬出版
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Journal Article] Genetic architecture of microRNA expression and its link to complex diseases in the Japanese population2021

    • Author(s)
      Sonehara Kyuto、Sakaue Saori、Maeda Yuichi、Hirata Jun、Kishikawa Toshihiro、Yamamoto Kenichi、Matsuoka Hidetoshi、Yoshimura Maiko、Nii Takuro、Ohshima Shiro、Kumanogoh Atsushi、Okada Yukinori
    • Journal Title

      Human Molecular Genetics

      Volume: -

    • DOI

      10.1093/hmg/ddab361

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01021
  • [Journal Article] Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease2021

    • Author(s)
      Tomofuji Yoshihiko et al.
    • Journal Title

      Annals of the Rheumatic Diseases

      Volume: 81 Pages: 278-288

    • DOI

      10.1136/annrheumdis-2021-221267

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18H05282, KAKENHI-PROJECT-19H01021
  • [Journal Article] Systematic identification of intron retention associated variants from massive publicly available transcriptome sequencing data2021

    • Author(s)
      Yuichi Shirishi et al.,
    • Journal Title

      bioRxiv

      Volume: NA

    • DOI

      10.1101/2021.10.05.463278

    • Open Access
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Journal Article] Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese2021

    • Author(s)
      Tomofuji Yoshihiko、Maeda Yuichi、Oguro-Igashira Eri、Kishikawa Toshihiro、Yamamoto Kenichi、Sonehara Kyuto、Motooka Daisuke、Matsumoto Yuki、Matsuoka Hidetoshi、Yoshimura Maiko、Yagita Mayu、Nii Takuro、Ohshima Shiro、Nakamura Shota、Inohara Hidenori、Takeda Kiyoshi、Kumanogoh Atsushi、Okada Yukinori
    • Journal Title

      Annals of the Rheumatic Diseases

      Volume: 80 Pages: 1575-1583

    • DOI

      10.1136/annrheumdis-2021-220687

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H05282, KAKENHI-PROJECT-19H01021
  • [Journal Article] Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types2020

    • Author(s)
      Fujimoto A*, Fujita M, Hasegawa T, Wong JH, Maejima K, Oku-Sasaki A, Nakano K, Shiraishi Y, Miyano S, Yamamoto G, Akagi K, Imoto S, and Nakagawa H
    • Journal Title

      Genome Res

      Volume: 30 Pages: 2020-2020

    • DOI

      10.1101/gr.255026.119

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K19426, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-18H05511, KAKENHI-PROJECT-18H04049, KAKENHI-PROJECT-18H02680, KAKENHI-PROJECT-18H03328, KAKENHI-PROJECT-19K09206
  • [Journal Article] Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis.2020

    • Author(s)
      Kakiuchi Nobuyuki et al.
    • Journal Title

      Nature.

      Volume: 577 Pages: 260-265

    • DOI

      10.1038/s41586-019-1856-1

    • NAID

      120006777064

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18K07224, KAKENHI-PROJECT-18K15747, KAKENHI-PROJECT-18K16084, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-19H04806, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-19H01053, KAKENHI-PROJECT-17H04157, KAKENHI-PROJECT-19H03560, KAKENHI-PROJECT-17J05245, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-18H05278
  • [Journal Article] Invariant patterns of clonal succession determine specific clinical features of myelodysplastic syndromes2019

    • Author(s)
      Nagata Yasunobu、Ogawa Seishi., et al.
    • Journal Title

      Nat Commun

      Volume: 10 Pages: 5386-5386

    • DOI

      10.1038/s41467-019-13001-y

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-19H01053
  • [Journal Article] Frequent germline mutations of HAVCR2 in sporadic subcutaneous panniculitis-like T-cell lymphoma.2019

    • Author(s)
      Polprasert C, Takeuchi Y, Kakiuchi N, Yoshida K, Assanasen T, Sitthi W, Bunworasate U, Pirunsarn A, Wudhikarn K, Lawasut P, Uaprasert N, Kongkiatkamon S, Moonla C, Sanada M, Akita N, Takeda J, Fujii Y, Suzuki H, Nannya Y, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Rojnuckarin P, Ogawa S, Makishima H
    • Journal Title

      Blood Adv

      Volume: 3 Pages: 588-595

    • DOI

      10.1182/bloodadvances.2018028340

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K10136, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-19H01053
  • [Journal Article] Frequent structural variations involving programmed death ligands in Epstein-Barr virus-associated lymphomas.2019

    • Author(s)
      Kataoka Keisuke, Miyoshi Hiroaki, Sakata Seiji, Dobashi Akito, Couronne Lucile, Kogure Yasunori, Sato Yasuharu, Nishida Kenji, Gion Yuka, Shiraishi Yuichi, Tanaka Hiroko, et al
    • Journal Title

      Leukemia.

      Volume: Epub ahead of print Pages: 1687-1699

    • DOI

      10.1038/s41375-019-0380-5

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K07205, KAKENHI-PROJECT-17K10136, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-19K09232, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-19H01053, KAKENHI-PROJECT-17K18335
  • [Journal Article] Frequent germline mutations of HAVCR2 in sporadic subcutaneous panniculitis-like T-cell lymphoma.2019

    • Author(s)
      Watatani Yosaku,Ogawa Seishi., et al.
    • Journal Title

      Blood Advances

      Volume: 33 Pages: 2867-2883

    • DOI

      10.1038/s41375-019-0473-1

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-19H01053, KAKENHI-PROJECT-17J05245, KAKENHI-PROJECT-17K09931, KAKENHI-PROJECT-17K10136
  • [Journal Article] Effectiveness of Integrated Interpretation of Exome and Corresponding Transcriptome Data for Detecting Splicing Variants of Genes Associated With Autosomal Recessive Disorders2019

    • Author(s)
      Yamada Mamiko、Suzuki Hisato、Shiraishi Yuichi、Kosaki Kenjiro
    • Journal Title

      Mol Genet Metab Rep.

      Volume: 21 Pages: 100531-100531

    • DOI

      10.1016/j.ymgmr.2019.100531

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K17342, KAKENHI-PROJECT-18H03327
  • [Journal Article] Age-related remodelling of oesophageal epithelia by mutated cancer drivers2019

    • Author(s)
      Yokoyama A, Ogawa S., et al.
    • Journal Title

      Nature.

      Volume: 565 Pages: 312-317

    • DOI

      10.1038/s41586-018-0811-x

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-18H02692, KAKENHI-PROJECT-17K19595, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-15H05791
  • [Journal Article] A Bayesian model integration for mutation calling through data partitioning2019

    • Author(s)
      Moriyama T, Imoto S, Hayashi S, Shiraishi Y, Miyano S, Yamaguchi R
    • Journal Title

      Bioinformatics

      Volume: 35(21) Pages: 4247-4254

    • DOI

      10.1093/bioinformatics/btz233

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Defective Epstein-Barr virus in chronic active infection and haematological malignancy2019

    • Author(s)
      Okuno Y, Murata T, Sato Y,Yoshida K, Sawada A, Inoue M, Kawa K, Seto M, Ohshima K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Nishida T, Kiyoi H, Kato S, Nakamura S, Morishima S, Yoshikawa T, Fujiwara S, Shimizu N, Isobe Y, Noguchi M, Kikuta A, Iwatsuki K, Takahashi Y, Kojima S, Ogawa S, Kimura H.
    • Journal Title

      Nature Microbiology

      Volume: 4 Pages: 404-413

    • DOI

      10.1038/s41564-018-0334-0

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K09921, KAKENHI-PROJECT-17K09934, KAKENHI-PROJECT-17K10107, KAKENHI-PROJECT-18K07816, KAKENHI-PROJECT-18K15165, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-19H05656, KAKENHI-PROJECT-17H04081
  • [Journal Article] Hematopoietic lineage distribution and evolutionary dynamics of clonal hematopoiesis.2018

    • Author(s)
      Berger G,Ogawa S., et al.
    • Journal Title

      Leukemia.

      Volume: 131 Pages: 1846-1857

    • DOI

      10.1182/blood-2017-09-805879

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26221308
  • [Journal Article] Integrated Molecular Characterization of the Lethal Pediatric Cancer Pancreatoblastoma.2018

    • Author(s)
      Isobe T, Seki M, Yoshida K, Sekiguchi M, Shiozawa Y, Shiraishi Y,..., Kataoka K, Sato Y, Kawai T, Chiba K, Tanaka H, Shimamura T, Kato M, Iguchi A, Hama A, Taguchi T, Akiyama M, Fujimura J, Inoue A, Ito T, Deguchi T, Kiyotani C, Iehara T, Hosoi H, Oka A, Sanada M, Tanaka Y, Hata K, Miyano S, Ogawa S, Takita J
    • Journal Title

      Cancer Research

      Volume: 78(4) Pages: 865-876

    • DOI

      10.1158/0008-5472.can-17-2581

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
  • [Journal Article] A comprehensive characterization of cis-acting splicing-associated variants in human cancer2018

    • Author(s)
      Shiraishi Y, Kataoka K, Chiba K, Okada A, Kogure Y, Tanaka H, Ogawa S, Miyano S.
    • Journal Title

      Genome Research

      Volume: 28 Pages: 1111-1125

    • DOI

      10.1101/gr.231951.117

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-18H03327
  • [Journal Article] Aberrant splicing and defective mRNA production induced by somatic spliceosome mutations in myelodysplasia2018

    • Author(s)
      Shiozawa Y, Malcovati L, Gall A, Sato-Otsubo A, Kataoka K, Sato Y, Watatani Y, Suzuki H, Yoshizato T, Yoshida K, Sanada M, Makishima H, Shiraishi Y, Chiba K, Hellstrom-Lindberg E, Miyano S, Ogawa S, Cazzola M
    • Journal Title

      Nat Commun.

      Volume: 9 Pages: 2642-2653

    • DOI

      10.1038/s41467-018-06063-x

    • NAID

      120006537149

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-26221308, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-17H04990
  • [Journal Article] Prognostic relevance of integrated genetic profiling in adult T-cell leukemia/lymphoma2018

    • Author(s)
      Kataoka K, Iwanaga M, Yasunaga J, Watanabe T, Ogawa S and et al.
    • Journal Title

      Blood.

      Volume: 131 Pages: 215-225

    • DOI

      10.1182/blood-2017-01-761874

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K07166, KAKENHI-PROJECT-17K09931, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H05248, KAKENHI-PROJECT-17H04209, KAKENHI-PROJECT-16H06249, KAKENHI-PROJECT-17J05245, KAKENHI-PROJECT-15K09507, KAKENHI-PROJECT-26460554, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-17K16189, KAKENHI-PLANNED-15H05909
  • [Journal Article] A novel genetic and morphologic phenotype of ARID2-mediated myelodysplasia.2018

    • Author(s)
      Sakai H, Hosono N, Nakazawa H, Przychodzen B, Polprasert C, Carraway HE, Sekeres MA, Radivoyevitch T, Yoshida K, Sanada M, Yoshizato T, Kataoka K, Nakagawa MM, Ueno H, Nannya Y, Kon A, Shiozawa Y, Takeda J, Shiraishi Y, Chiba K, Miyano S, Singh J, Padgett RA, Ogawa S, Maciejewski JP, Makishima H
    • Journal Title

      Leukemia.

      Volume: 32(3) Pages: 839-843

    • DOI

      10.1038/leu.2017.319

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-16K19574, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-17H04990
  • [Journal Article] Gene expression and risk of leukemic transformation in myelodysplasia2017

    • Author(s)
      Shiozawa Y, Malcovati L, Galli A, Pellagatti A, Karimi M, Sato-Otsubo A, Sato Y, Suzuki H, Yoshizato T, Yoshida K, Shiraishi Y, Chiba K, Makishima H, Boultwood J, Hellstroem-Lindberg E, Miyano S, Cazzola M, Ogawa S
    • Journal Title

      Blood

      Volume: 130(24) Pages: 2642-2653

    • DOI

      10.1182/blood-2017-05-783050

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H05338
  • [Journal Article] Hypoxic adaptation of leukemic cells infiltrating the CNS affords a therapeutic strategy targeting VEGFA.2017

    • Author(s)
      Kato Itaru、Nishinaka Yoko、Nakamura Masahiro、et al.
    • Journal Title

      Blood

      Volume: 129 Pages: 3126-3129

    • DOI

      10.1182/blood-2016-06-721712

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K10136, KAKENHI-PROJECT-17KT0108, KAKENHI-PROJECT-17K16251, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15J04640, KAKENHI-PROJECT-15K06921
  • [Journal Article] A framework for generating interactive reports for cancer genome analysis2017

    • Author(s)
      Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi
    • Journal Title

      The Journal of Open Source Software

      Volume: 2(20)

    • DOI

      10.21105/joss.00457

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Journal Article] Haploinsufficiency of TNFAIP3 (A20) by germline mutation is involved in autoimmune lymphoproliferative syndrome2017

    • Author(s)
      Takagi M, Ogata S, Ueno H, Yoshida K, Yeh T, Hoshino A, Piao J, Yamashita M, Nanya M, Okano T, Kajiwara M, Kanegane H, Muramatsu H, Okuno Y, Shiraishi Y, Chiba K, Tanaka H, Bando Y, Kato M, Hayashi Y, Miyano S, Imai K, Ogawa S, Kojima S, Morio T.
    • Journal Title

      J Allergy Clin Immuno

      Volume: - Pages: 1914-1922

    • DOI

      10.1016/j.jaci.2016.09.038

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26221308, KAKENHI-PROJECT-26293244, KAKENHI-PROJECT-26461570, KAKENHI-PROJECT-15K09640, KAKENHI-PROJECT-17K10099, KAKENHI-PLANNED-15H05912
  • [Journal Article] Dynamics of clonal evolution in myelodysplastic syndrome2017

    • Author(s)
      Makishima H, et al.
    • Journal Title

      Nature genetics

      Volume: 49 Pages: 204-204

    • DOI

      10.1038/ng.3742

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-26221308, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-15H05668, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-16H02660, KAKENHI-PUBLICLY-15H01504
  • [Journal Article] A comprehensive characterization of cis-acting splicing-associated variants in human cancer2017

    • Author(s)
      Yuichi Shiraishi, Keisuke Kataoka, Kenichi Chiba, Ai Okada, Yasunori Kogure, Hiroko Tanaka, Seishi Ogawa, Satoru Miyano
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/162560

    • Open Access
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Journal Article] Whole genome sequencing discriminates hepatocellular carcinoma with intrahepatic metastasis from multi-centric tumors.2017

    • Author(s)
      Furuta M, Ueno M, Fujimoto A, Hayami S, Yasukawa S, Kojima F, Arihiro K, Kawakami Y, Wardell CP, Shiraishi Y, Tanaka H, Nakano K, Maejima K, Sasaki-Oku A, Tokunaga N, Boroevich KA, Abe T, Aikata H, Ohdan H, Gotoh K, Kubo M, Tsunoda T, Miyano S, Chayama K, Yamaue H, Nakagawa H
    • Journal Title

      J Hepatic.

      Volume: 66(2) Pages: 363-373

    • DOI

      10.1016/j.jhep.2016.09.021

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26293308, KAKENHI-PROJECT-15K19915, KAKENHI-PROJECT-17K10675, KAKENHI-PROJECT-26430196, KAKENHI-PROJECT-15H04814
  • [Journal Article] Clonal evolution in myelodysplastic syndromes2017

    • Author(s)
      da Silva-Coelho P, Kroeze LI, Yoshida K, Koorenhof-Scheele TN, Knops R, van de Locht LT, de Graaf AO, Massop M, Sandmann S, Dugas M, Stevens-Kroef MJ, Cermak J, Shiraishi Y, Chiba K, Tanaka H, Miyano S, de Witte T, Blijlevens NMA, Muus P, Huls G, van der Reijden BA, Ogawa S, Jansen JH.
    • Journal Title

      Nature communications

      Volume: 印刷中 Pages: 15099-15099

    • DOI

      10.1038/ncomms15099

    • NAID

      130005163316

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H05668, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26221308
  • [Journal Article] Recurrent SPI1 (PU.1) fusions in high-risk pediatric T cell acute lymphoblastic leukemia2017

    • Author(s)
      Seki M, Kimura S, Isobe T, Yoshida K, (13 authors), Masuda K, Kawamoto H, Ohki K, Kato M, Arakawa Y, Koh K, Hanada R, Moritake H, Akiyama M, Kobayashi R, Deguchi T, Hashii Y, Imamura T, Sato A, Kiyokawa N, Oka A, Hayashi Y, Takagi M, Manabe A, Ohara A, Horibe K, Sanada M, Iwama A, Mano H, Miyano S, Ogawa S, Takita J
    • Journal Title

      Nature genetis

      Volume: 49 Pages: 1274-1281

    • DOI

      10.1038/ng.3900

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K09870, KAKENHI-PROJECT-17K10130, KAKENHI-PROJECT-17K10136, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H02544, KAKENHI-PROJECT-17H04224, KAKENHI-PROJECT-17H04234, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-16K15498, KAKENHI-PROJECT-16K19574, KAKENHI-PROJECT-17K16242, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-15H05325
  • [Journal Article] Mutational Landscape of Pediatric Acute Lymphoblastic Leukemia.2017

    • Author(s)
      Hoshino A, Okada S, Yoshida K, Nishida N, Okuno Y, Ueno H, Yamashita M, Okano T, Tsumura M, Nishimura S, Sakata S, Kobayashi M, Nakamura H, Kamizono J, Mitsui-Sekinaka K, Ichimura T, Ohga S, Nakazawa Y, Takagi M, Imai K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Kojima S, Nonoyama S, Morio T, Kanegane H.
    • Journal Title

      Journal of Allergy and Clinical Immunology

      Volume: - Pages: 223-231

    • DOI

      10.1016/j.jaci.2016.09.029

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26221308, KAKENHI-PROJECT-26293244, KAKENHI-PROJECT-26293250, KAKENHI-PROJECT-26461570, KAKENHI-PROJECT-15K15386, KAKENHI-PROJECT-15K21189, KAKENHI-PROJECT-15K09640, KAKENHI-PROJECT-17K10099, KAKENHI-PROJECT-17K10112, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H05355, KAKENHI-PROJECT-16K15528
  • [Journal Article] A novel adaptive penalized logistic regression for uncovering biomarker associated with anti-cancer drug sensitivity2017

    • Author(s)
      Park H, Shiraishi Y, Imoto S, Miyano S
    • Journal Title

      EEE/ACM Trans Comput Biol Bioinform

      Volume: -

    • DOI

      10.1109/tcbb.2016.2561937

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Impact of genetic alterations in stem-cell transplantation for myelodysplasia and secondary acute myeloid leukemia2017

    • Author(s)
      Yoshizato T, et. al., Sanada M, et. al., Ogawa S.
    • Journal Title

      Blood.

      Volume: 129 Pages: 2347-2358

    • DOI

      10.1182/blood-2016-12-754796

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-26115009, KAKENHI-PROJECT-16H05338, KAKENHI-PROJECT-15H05668, KAKENHI-PROJECT-15J02911, KAKENHI-PROJECT-17K16189, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26221308, KAKENHI-PROJECT-17H04209
  • [Journal Article] OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads2017

    • Author(s)
      Moriyama T, Shiraishi Y, Chiba K, Yamaguchi R, Imoto S, Miyano S
    • Journal Title

      IEEE Transactions on NanoBioscience

      Volume: 14 Pages: 116-122

    • DOI

      10.1109/tnb.2017.2670601

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-16H02676
  • [Journal Article] Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population2016

    • Author(s)
      G. Sawada (他43名, 山本21番目)
    • Journal Title

      Gastroenterology.

      Volume: 150 Pages: 1049-1051

    • DOI

      10.1053/j.gastro.2016.01.035

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496
  • [Journal Article] Whole genome mutational landscape and characterization of non-coding and structural mutations in liver cancer2016

    • Author(s)
      Fujimoto A et al.
    • Journal Title

      Nat Genet.

      Volume: 48 Pages: 500-509

    • DOI

      10.1038/ng.3547

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-26114721, KAKENHI-PROJECT-15H04814, KAKENHI-PROJECT-26293308, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-26430196
  • [Journal Article] A simple model-based approach to inferring and visualizing cancer mutation signatures2016

    • Author(s)
      Yuichi Shiraishi , Georg Tremmel, Satoru Miyano, Matthew Stephens
    • Journal Title

      PLoS Genetics

      Volume: 11(12)

    • DOI

      10.1371/journal.pgen.1005657

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00398, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-25280105
  • [Journal Article] Variegated RHOA mutations in adult T-cell leukemia/lymphoma.2016

    • Author(s)
      Nagata Y, Kontani K, Enami T, Kataoka K, Ishii R, Totoki Y, Kataoka TR, Hirata M, Aoki K, Nakano K, Kitanaka A, Sakata-Yanagimoto M, Egami S, Shiraishi Y, Chiba K, Tanaka H, Shiozawa Y, Yoshizato T, (9名), Miyano S, Nureki O, Shibata T, Haga H, Shimoda K, Katada T, Chiba S, Watanabe T, Ogawa S
    • Journal Title

      Blood.

      Volume: 127 Pages: 596-604

    • DOI

      10.1182/blood-2015-06-644948

    • Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-26893127, KAKENHI-PROJECT-14J03784, KAKENHI-PROJECT-26650029, KAKENHI-PROJECT-26290053, KAKENHI-PROJECT-26291038, KAKENHI-PROJECT-25461407, KAKENHI-PROJECT-23229001
  • [Journal Article] Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution2016

    • Author(s)
      R. Uchi (他40名, 山本36番目)
    • Journal Title

      PLoS Genet

      Volume: 12 Pages: 1005778-1005778

    • DOI

      10.1371/journal.pgen.1005778

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10150, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25462038, KAKENHI-PROJECT-25462070, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26861003, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10170, KAKENHI-PROJECT-15H05325
  • [Journal Article] Aberrant PD-L1 expression via 3'-UTR disruption in multiple cancers.2016

    • Author(s)
      Kataoka K, et al.
    • Journal Title

      Nature

      Volume: 534 Issue: 7607 Pages: 402-406

    • DOI

      10.1038/nature18294

    • Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-24111008, KAKENHI-PLANNED-15H05912, KAKENHI-ORGANIZER-24111001, KAKENHI-PROJECT-26220207, KAKENHI-PROJECT-26221004, KAKENHI-PROJECT-15H04743, KAKENHI-PROJECT-15K09480, KAKENHI-PROJECT-16H06276
  • [Journal Article] Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity.2015

    • Author(s)
      Fujimoto A, Furuta M, Shiraishi Y, Shigemizu D, Abe T, Boroevich KA, Nakano K, Yamamoto Y, Tanaka H, Shibuya T, Shibata T, Kubo M, Chayama K, Miyano S, Tsunoda T, Nakagawa H, 他
    • Journal Title

      Nat Comms

      Volume: 6 Pages: 00-00

    • DOI

      10.1038/ncomms7120

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PLANNED-22134008, KAKENHI-PUBLICLY-25134717, KAKENHI-PUBLICLY-25134720, KAKENHI-PROJECT-25670375, KAKENHI-PUBLICLY-26114721, KAKENHI-PROJECT-26430196
  • [Journal Article] PRPF8 defects cause missplicing in myeloid malignancies2015

    • Author(s)
      Kurtovic-Kozaric A, Przychodzen B, Singh J, Konarska MM, Clemente MJ, Otrock ZK, Nakashima M, Hsi ED, Yoshida K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Ogawa S, Boultwood J, Makishima H, Maciejewski JP, Padgett RA
    • Journal Title

      Leukemia

      Volume: 29(1) Pages: 126-136

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity2015

    • Author(s)
      Fujimoto A, Furuta M, Shiraishi Y, Gotoh K, Kawakami Y, Arihiro K, Nakamura T, Ueno M, Ariizumi SI, Hai Nguyen H, Shigemizu D, Abe T, Boroevich KA, Nakano K, Sasaki A, Kitada R, Maejima K, Yamamoto Y, Tanaka H, Shibuya T, Shibata T, Ojima H, Shimada K, Hayami S, Shigekawa Y, Aikata H, Ohdan H, Marubashi S, et al.
    • Journal Title

      Nat Commun.

      Volume: 6 Pages: 6120-6120

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated molecular analysis of adult T cell leukemia/lymphoma2015

    • Author(s)
      Kataoka K, Nagata Y, Kitanaka A, Shiraishi Y, Shimamura T, Yasunaga J, Totoki Y, Chiba K, Sato-Otsubo A, Nagae G, et al.
    • Journal Title

      Nat Genet

      Volume: 47(11) Pages: 1304-1315

    • DOI

      10.1038/ng.3415

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K08987, KAKENHI-PROJECT-15K09479, KAKENHI-PROJECT-15K09507, KAKENHI-PROJECT-26460554, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-25250020, KAKENHI-PROJECT-26893127, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-25293219
  • [Journal Article] Genomon ITDetector: A tool for somatic internal tandem duplication detection from cancer genome sequencing data. Bioinformatics2015

    • Author(s)
      Chiba K, Shiraishi Y, Nagata Y, Yoshida K, Imoto S, Ogawa S, Miyano S.
    • Journal Title

      Bioinformatics

      Volume: 31(1) Pages: 116-118

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers.2015

    • Author(s)
      Shiraishi Y, Fujimoto A, Furuta M, Chayama K, Tsunoda T, Miyano S, and Nakagawa H, 他
    • Journal Title

      PLoS One.

      Volume: 9

    • DOI

      10.1371/journal.pone.0114263

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PLANNED-22134008, KAKENHI-PUBLICLY-25134717, KAKENHI-PROJECT-25670375, KAKENHI-PROJECT-26430196, KAKENHI-PROJECT-26670383, KAKENHI-PROJECT-221S0001
  • [Journal Article] High performance computing of a fusion gene detection pipeline on the K computer2015

    • Author(s)
      Ito S, Shiraishi Y, Shimamura T, Chiba K, Miyano S
    • Journal Title

      BIBM

      Volume: 2015 Pages: 1441-1447

    • DOI

      10.1109/bibm.2015.7359888

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] The landscape of somatic mutations in Down syndrome-related myeloid disorders2014

    • Author(s)
      Yoshida K
    • Journal Title

      Nature genetics

      Volume: 45 Pages: 1293-1200

    • DOI

      10.1038/ng.2759

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134006, KAKENHI-PROJECT-23249052, KAKENHI-PROJECT-23390266, KAKENHI-PROJECT-23390273, KAKENHI-PROJECT-23591560, KAKENHI-PROJECT-24390242, KAKENHI-PROJECT-24390262, KAKENHI-PROJECT-24390268, KAKENHI-PROJECT-24659458, KAKENHI-PROJECT-24700272, KAKENHI-PROJECT-24791054, KAKENHI-PROJECT-25461611, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25670482
  • [Journal Article] Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers2014

    • Author(s)
      Shiraishi Y, Fujimoto A, Furuta M, Tanaka H, Chiba K, Boroevich KA, Abe T, Kawakami Y, Ueno M, Gotoh K, Ariizumi S, Shibuya T, Nakano K, Sasaki A, Maejima K, Kitada R, Hayami S, Shigekawa Y, Marubashi S, Yamada T, Kubo M, et. al.
    • Journal Title

      PLoS One

      Volume: 9(12)

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recurrent genetic defects on chromosome 7q in myeloid neoplasms2014

    • Author(s)
      Hosono N, Makishima H, Jerez A, Yoshida K, Przychodzen B, McMahon S, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Sanada M, Gomez-Segui I, Verma AK, McDevitt MA, Sekeres MA, Ogawa S, Maciejewski JP
    • Journal Title

      Leukemia

      Volume: 28(6) Pages: 1348-1351

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Landscape of genetic lesions in 944 patients with myelodysplastic syndromes2014

    • Author(s)
      Haferlach T, Nagata Y, Grossmann V, Okuno Y, Bacher U, Nagae G, Schnittger S, Sanada M, Kon A, Alpermann T, Yoshida K, Roller A, Nadarajah N, Shiraishi Y, Shiozawa Y, Chiba K, Tanaka H, Koeffler HP, Klein HU, Dugas M, Aburatani H, Kohlmann A, Miyano S, Haferlach C, Kern W, Ogawa S
    • Journal Title

      Leukemia

      Volume: 28(2) Pages: 241-247

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Tracing the development of acute myeloid leukemia in CBL syndrome2014

    • Author(s)
      Becker H, Yoshida K, Blagitko-Dorfs N, Claus R, Pantic M, Abdelkarim M, Niemoller C, Greil C, Hackanson B, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Dohner K, Schnittger S, Henneke P, Niemeyer CM, Flotho C, Pfeifer D, Ogawa S, Lubbert M
    • Journal Title

      Blood

      Volume: 123(12) Pages: 1883-1886

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Deep sequencing reveals stepwise mutation acquisition in paroxysmal nocturnal hemoglobinuria2014

    • Author(s)
      Shen W, Clemente MJ, Hosono N, Yoshida K, Przychodzen B, Yoshizato T, Shiraishi Y, Miyano S, Ogawa S, Maciejewski JP, Makishima H
    • Journal Title

      J Clin Invest

      Volume: 124(10) Pages: 4529-4538

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Clonal leukemic evolution in myelodysplastic syndromes with TET2 and IDH1/2 mutations2014

    • Author(s)
      Lin TL, Nagata Y, Kao HW, Sanada M, Okuno Y, Huang CF, Liang DC, Kuo MC, Lai CL, Lee EH, Shih YS, Tanaka H, Shiraishi Y, Chiba K, Lin TH, Wu JH, Miyano S, Ogawa S, Shih LY
    • Journal Title

      Haematologica

      Volume: 99(1) Pages: 28-36

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Somatic RHOA mutation in angioimmunoblastic T cell lymphoma2014

    • Author(s)
      Sakata-Yanagimoto M, Enami T, Yoshida K, Shiraishi Y, Ishii R, Miyake Y, Muto H, Tsuyama N, Sato-Otsubo A, Okuno Y, Sakata S, Kamada Y, Nakamoto-Matsubara R, et. al.
    • Journal Title

      Nat Genet.

      Volume: 46(2) Pages: 171-175

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Haploinsufficiency of Sf3b1 leads to compromised stem cell function but not to myelodysplasia2014

    • Author(s)
      Matsunawa M, Yamamoto R, Sanada M, Sato-Otsubo A, Shiozawa Y, Yoshida K, Otsu M, Shiraishi Y, Miyano S, Isono K, Koseki H, Nakauchi H, Ogawa S
    • Journal Title

      Leukemia

      Volume: 28(9) Pages: 1844-1850

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma2014

    • Author(s)
      Seki M, Yoshida K, Shiraishi Y, Shimamura T, Sato Y, Nishimura R, Okuno Y, Chiba K, Tanaka H, Kato K, Kato M, Hanada R, Nomura Y, Park MJ, Ishida T, Oka A, Igarashi T, Miyano S, Hayashi Y, Ogawa S, Takita J
    • Journal Title

      Cancer Res.

      Volume: 74(10) Pages: 2742-2749

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Acquired initiating mutations in early hematopoietic cells of CLL patients2014

    • Author(s)
      Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Beral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA
    • Journal Title

      Cancer Discov

      Volume: 4(9) Pages: 1088-1101

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2014

    • Author(s)
      Sato Y, Yoshida K
    • Journal Title

      Nat Genet

      Volume: 45 Pages: 860-7

    • DOI

      10.1038/ng.2699

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-12J04216, KAKENHI-PLANNED-22134008, KAKENHI-PLANNED-24112006, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-24700272, KAKENHI-PROJECT-25291023, KAKENHI-PROJECT-25670446, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521
  • [Journal Article] HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations2014

    • Author(s)
      Usuyama N, Shiraishi Y, Sato Y, Kume H, Homma Y, Ogawa S, Miyano S, Imoto S
    • Journal Title

      Bioinformatics

      Volume: 30(23) Pages: 3302-3309

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Recurrent somatic mutations underlie corticotropin-independent Cushing's syndrome2014

    • Author(s)
      Sato Y, Maekawa S, Ishii R, Sanada M, Morikawa T, Shiraishi Y, Yoshida K, Nagata Y, Sato-Otsubo A, Yoshizato T, Suzuki H, Shiozawa Y, Kataoka K, Kon A, Aoki K, Chiba K, Tanaka H, Kume H, Miyano S, Fukayama M, Nureki O, Homma Y, Ogawa S
    • Journal Title

      Science

      Volume: 344(6186) Pages: 917-920

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Novel recurrent mutations in the RAS-like GTP-binding gene RIT1 in myeloid malignancies2013

    • Author(s)
      Gomez-Segui I, Makishima H, Jerez A, Yoshida K, Przychodzen B, Miyano S, Shiraishi Y, Husseinzadeh HD, Guinta K, Clemente M, Hosono N, McDevitt MA, Moliterno AR, Sekeres MA, Ogawa S, Maciejewski JP.
    • Journal Title

      Leukemia

      Volume: 27(9) Pages: 1943-1946

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] ACTN1 mutations cause congenital macrothrombocytopenia2013

    • Author(s)
      Kunishima S, Okuno Y, Yoshida K, Shiraishi Y, Sanada M, Muramatsu H, Chiba K, Tanaka H, Miyazaki K, Sakai M, Ohtake M, Kobayashi R, Iguchi A, Niimi G, Otsu M, Takahashi Y, Miyano S, Saito H, Kojima S and Ogawa S.
    • Journal Title

      American Journal of Human Genetics

      Volume: 92(3) Pages: 431-438

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2013

    • Author(s)
      Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y and Ogawa S.
    • Journal Title

      Nature Genetics

      Volume: 45(8) Pages: 860-7

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Somatic SETBP1 mutations in myeloid malignancies2013

    • Author(s)
      Makishima H, Yoshida K, Nguyen N, Okuno Y, Ng KP, Gudmundsson KO, Vishwakarma BA, Jerez A, Gomez-Segui I, Takahashi M, Shiraishi Y, Nagata Y, Guinta K, Mori H, Sekeres MA, Chiba K, Tanaka H, Muramatsu H, Sakaguchi H, Paquette RL, McDevitt MA, Kojima S, Saunthararajah Y, Miyano S, Shih LY, Du Y, Ogawa S, Maciejewski JP.
    • Journal Title

      Nature Genet.

      Volume: 45(8) Pages: 942-946

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data2013

    • Author(s)
      Shiraishi Y, Sato Y, Chiba K, Okuno Y, Nagata Y, Yoshida K, Shiba N, Hayashi Y, Kume H, Homma Y, Sanada M, Ogawa S and Miyano S.
    • Journal Title

      Nucleic Acids Research

      Volume: 41(7)

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms2013

    • Author(s)
      Kon A, Shih LY, Minamino M, Sanada M, Shiraishi Y, Nagata Y, Yoshida K, Okuno Y, Bando M, Nakato R, Ishikawa S, Sato-Otsubo A, Nagae G, Nishimoto A, Haferlach C, Nowak D, Sato Y, Alpermann T, Nagasaki M, Shimamura T, Tanaka H, Chiba K, Yamamoto R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S and Ogawa S.
    • Journal Title

      Nature Genetics

      Volume: 45(10) Pages: 1232-7

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] An empirical Bayesian framework for somatic mutation detection from cancer2013

    • Author(s)
      Shiraishi Y, Sato Y, Chiba K, Okuno Y, Nagata Y, Yoshida K, Shiba N, Hayashi Y, Kume H, Homma Y, Sanada M, Ogawa S, Miyano S
    • Journal Title

      Nucleic Acids Res.

      Volume: 41(7)

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] BCOR and BCORL1 mutations in myelodysplastic syndromes and related disorders2013

    • Author(s)
      Damm F, Chesnais V, Nagata Y, Yoshida K, Okuno Y, Itzykson R, Sanada M, Shiraishi Y, Gelsi-Boyer V, Miyano S, Mori H, Shih LY, Park S, Dreyfus F, Rose C, Cheze S, Vey N, Legentil M, Duffourd Y, de Botton S, Preudhomme C, Birnbaum D, Bernard OA, Ogawa S, Fontenay M, Kosmider O.
    • Journal Title

      Blood

      Volume: 122(18) Pages: 3169-3177

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Exome sequencing identifies secondary mutations of SETBP1 and JAK3 in juvenile myelomonocytic leukemia2013

    • Author(s)
      Sakaguchi H, Okuno Y, Muramatsu H, Yoshida K, Shiraishi Y, Takahashi M, Kon A, Sanada M, Chiba K, Tanaka H, Makishima H, Wang X, Xu Y, Doisaki S, Hama A, Nakanishi K, Takahashi Y, Yoshida N, Maciejewski JP, Miyano S, Ogawa S and Kojima S.
    • Journal Title

      Nature Genetics

      Volume: 45(8) Pages: 937-41

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms2013

    • Author(s)
      Kon A, Shih LY, Sanada M, Shiraishi Y, Okuno Y, Nagae G, Nishimoto A, Nowak D, Sato Y, Shimamura T, Tanaka H, Chiba K, Yamaguchi T, Otsu M, Obara N, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(10) Pages: 1232-1237

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data.2013

    • Author(s)
      Yuichi Shiraishi
    • Journal Title

      Nucleic Acids Research

      Volume: 41

    • DOI

      10.1093/nar/gkt126

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-23249052, KAKENHI-PROJECT-23591560, KAKENHI-PROJECT-24390242, KAKENHI-PROJECT-24390268, KAKENHI-PROJECT-24659458, KAKENHI-PROJECT-24700272, KAKENHI-PROJECT-25670482, KAKENHI-PLANNED-22134006
  • [Journal Article] Integrated molecular analysis of clear-cell renal cell carcinoma2013

    • Author(s)
      Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S.
    • Journal Title

      Nature Genet.

      Volume: 45(8) Pages: 860-867

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Exome sequencing identifies secondary mutations of SETBP1 and JAK3 in juvenile myelomonocytic leukemia2013

    • Author(s)
      Sakaguchi H, Okuno Y, Muramatsu H, Yoshida K, Shiraishi Y, Takahashi M, Kon A, Sanada M, Chiba K, Tanaka H, Makishima H, Wang X, Xu Y, Doisaki S, Hama A, Nakanishi K, Takahashi Y, Yoshida N, Maciejewski JP, Miyano S, Ogawa S, Kojima S.
    • Journal Title

      Nature Genet.

      Volume: 45(8) Pages: 937-941

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] The landscape of somatic mutations in Down syndrome-related myeloid disorders2013

    • Author(s)
      Yoshida K, Toki T, Okuno Y, Kanezaki R, Shiraishi Y, Sato-Otsubo A, Kon A, Nagata Y, Sato Y, Wang R, Shiba N, Chiba K, Tanaka H, Hama A, Hasegawa D, Nakamura K, Kanegane H, Tsukamoto K, Adachi S, Kawakami K, Kato K, Nishimura R, Izraeli S, Hayashi Y, Miyano S, Kojima S, Ito E, Ogawa S
    • Journal Title

      Nature Genet.

      Volume: 45 Pages: 1293-1299

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] The landscape of somatic mutations in Down syndrome-related myeloid disorders2013

    • Author(s)
      Yoshida K, Toki T, Okuno Y, Kanezaki R, Shiraishi Y, Sato-Otsubo A, Sanada M, Park MJ, Terui K, Suzuki H, Kon A, Nagata Y, Sato Y, Wang R, Shiba N, Chiba K, Tanaka H, Hama A, Muramatsu H, Hasegawa D, Nakamura K, Kanegane H, Tsukamoto K, Adachi S, Kawakami K, Kato K, Nishimura R, Izraeli S, Hayashi Y, Miyano S, Kojima S, Ito E, Ogawa S.
    • Journal Title

      Nature Genetics

      Volume: 45(11) Pages: 1293-9

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Clonal selection in xenografted TAM recapitulates the evolutionary process of myeloid leukemia in Down syndrome2013

    • Author(s)
      Saida S, Watanabe K, Sato-Otsubo A, Terui K, Yoshida K, Okuno Y, Toki T, Wang RN, Shiraishi Y, Miyano S, Kato I, Morishima T, Fujino H, Umeda K, Hiramatsu H, Adachi S, Ito E, Ogawa S, Ito M, Nakahata T, Heike T.
    • Journal Title

      Blood

      Volume: 121(21) Pages: 4377-4387

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] Identification of genes up-regulated in ALK-positive and EGFR/KRAS/ALK-negative lung adenocarcinomas2012

    • Author(s)
      後藤 典子
    • Journal Title

      Cancer Res.

      Volume: 72 Pages: 100-111

    • DOI

      10.1158/0008-5472.can-11-1403

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130009, KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-23390062
  • [Journal Article] A rank-based statistical test for measuring synergistic effects between two gene sets2011

    • Author(s)
      Shiraishi U, Okada-Hatakeyama M, Miyano S
    • Journal Title

      Bioinformatics

      Volume: 27(17) Pages: 2399-2405

    • DOI

      10.1093/bioinformatics/btr382

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004
  • [Journal Article] ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information2011

    • Author(s)
      Suzuki S, Yasuda T, Shiraishi Y, Miyano S, Nagasaki M
    • Journal Title

      BMC Bioinformatics

      Volume: 12

    • DOI

      10.1186/1471-2105-12-s14-s7

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-23650150
  • [Journal Article] Statistical approaches for combining binary classifiers for multiclass classification2011

    • Author(s)
      Yuichi Shiraishi, Kenji Fukumizu
    • Journal Title

      Neurocomputing 74

      Pages: 680-688

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Journal Article] Frequent pathway mutations of splicing machinery in myelodysplasia., Nature2011

    • Author(s)
      Kenichi Yoshida
    • Journal Title

      Nature

      Volume: 478 Pages: 332-339

    • DOI

      10.1038/nature10496

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-22130002, KAKENHI-PLANNED-22134004, KAKENHI-PROJECT-22390191, KAKENHI-PROJECT-22659058, KAKENHI-PROJECT-22790895, KAKENHI-PLANNED-23106004, KAKENHI-PUBLICLY-23118503, KAKENHI-PROJECT-23390269, KAKENHI-PROJECT-23659482, KAKENHI-PROJECT-23659533, KAKENHI-PROJECT-23791068, KAKENHI-PROJECT-23791075
  • [Journal Article] Statistical approaches for combining binary classifiers for multiclass classification2011

    • Author(s)
      Yuichi Shiraishi, Kenji Fukumizu
    • Journal Title

      Neurocomputing

      Volume: 74 Pages: 680-688

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Journal Article] Frequent pathway mutations of splicing machinery in myelodysplasia2011

    • Author(s)
      Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S and Ogawa S.
    • Journal Title

      Nature

      Volume: 478 Pages: 64-69

    • Data Source
      KAKENHI-PROJECT-24700272
  • [Journal Article] Inferring cluster-based networks from differently stimulated multiple time-course gene expression data2010

    • Author(s)
      Yuichi Shiraishi, Shuhei Kimura, Mariko Okada
    • Journal Title

      Bioinformatics

      Volume: 26 Pages: 1073-1081

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Journal Article] Inferring cluster-based networks from differently stimulated multiple time-course gene expression data2010

    • Author(s)
      Yuichi Shiraishi, Shuhei Kimura, Mariko Okada
    • Journal Title

      Bioinformatics 26

      Pages: 1073-1081

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] 大規模公共トランスクリプトームレポジトリからの自律的知識獲得システム基盤2022

    • Author(s)
      白石友一
    • Organizer
      2021年度国立遺伝学研究所研究会「ゲノム医科学とバイオインフォマティクスの接点と集学研究」
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] 知識発見を加速するゲノム解析プラットフォームについて2022

    • Author(s)
      白石友一
    • Organizer
      和3年度国際がん研究シンポジウム「全ゲノム解析が変革するがん研究・がん医療」
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] クラウドを使ったゲノム解析基盤2022

    • Author(s)
      白石友一
    • Organizer
      第11回マルチNGSオミクス解析研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] 知識発見を加速するオミクス解析基盤2022

    • Author(s)
      白石友一
    • Organizer
      大阪大学医学系研究科バイオインフォマティクスセミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] Systematic identification of intron retention associated variants from massive publicly available transcriptome sequencing data2021

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      International Conference on Genomics (IGC-16)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] Massive in-silico screening of intron retention causing variants using publicly available transcriptome sequencing data2021

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      nternational Caparica Conference in splicing 2021 (splicing2021)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21H03549
  • [Presentation] Splicing Junction Variant-based Naive Bayes Classifier as a Tool for Hot Spot Mutation Status Prediction in Pancancer2020

    • Author(s)
      Raul Mateos, Naoko Iida, Kenichi Chiba, Ai Okada, Yuichi Shiraishi
    • Organizer
      79th Annual Meeting of the Japanese Cancer Association
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] An atlas of intron retention associated variants collected by cloud-based transcriptome analysis platform2020

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      3rd International Caparica Conference in Splicing 2020
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] Detecting genomic variants causing abnormal splicing using only transcriptome data2020

    • Author(s)
      Naoko Iida, Kenichi Chiba, Raul Mateos, Yuichi Shiraishi
    • Organizer
      79th Annual Meeting of the Japanese Cancer Association
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] 大規模トランスクリプトーム解析の情報基盤2020

    • Author(s)
      白石 友一
    • Organizer
      第2回日本メディカルAI学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] 大規模トランスクリプトーム解析の情報基盤2019

    • Author(s)
      白石 友一
    • Organizer
      第92回日本生化学会大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] がんゲノムにおけるスプライシング変異の網羅的な検出2018

    • Author(s)
      白石友一
    • Organizer
      生命医薬情報学連合大会(IIBMP2018)
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] がんゲノムにおけるスプライシング変異の網羅的な検出2018

    • Author(s)
      白石友一
    • Organizer
      第91回日本生化学会大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] がんゲノム・トランスクリプトームの統合解析2018

    • Author(s)
      白石友一
    • Organizer
      2018年度統計関連学会連合大会
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] Systematic Identification of Splicing Associated Variants toward Precision Medicine2018

    • Author(s)
      白石友一
    • Organizer
      第49回高松宮妃癌研究基金国際シンポジウム
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H03327
  • [Presentation] The landscape of splicing associated variants revealed bylarge scale whole exome and transcriptome analysis2017

    • Author(s)
      白石 友一、片岡 圭亮、千葉 健一、岡田 愛、田中 洋子、小川 誠司、宮野 悟
    • Organizer
      第77回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] 大規模がんゲノム変異データマイニングのための統計学的手法2016

    • Author(s)
      白石友一
    • Organizer
      第五回生命医薬情報学連合大会
    • Place of Presentation
      東京
    • Year and Date
      2016-09-29
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] 大規模がんゲノム変異データマイニングのための統計学的手法2016

    • Author(s)
      白石友一
    • Organizer
      2016年度統計関連学会連合大会
    • Place of Presentation
      金沢
    • Year and Date
      2016-09-04
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] Genomon-SVを使った大規模エキソーム解析で明らかになった構造変異の全体像2016

    • Author(s)
      白石友一
    • Organizer
      第75回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2016-10-06
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] がんゲノムにおける変異シグナチャーを検出する新たな統計的手法について2015

    • Author(s)
      白石友一
    • Organizer
      第74回日本癌学会総会
    • Place of Presentation
      名古屋国際会議場(愛知県名古屋市)
    • Year and Date
      2015-10-08
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] Extraction of Latent Probabilistic Mutational Signature in Cancer Genomes2015

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      RECOMB-Seq/CCB-2015
    • Place of Presentation
      ワルシャワ、ポーランド
    • Year and Date
      2015-04-10
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K00398
  • [Presentation] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data2014

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      Pacific Symposium on Biocomputing, 2014
    • Place of Presentation
      Hawaii, USA
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] Integrated analysis of whole genome and whole transcriptome sequencing of HBV-associated hepatocellular carcinoma2013

    • Author(s)
      白石友一
    • Organizer
      NGS現場の会、第三回研究会
    • Place of Presentation
      神戸
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] Integrated analysis of whole genome and whole transcriptome sequencing of HBV-associated hepatocellular carcinoma2013

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      COLD SPRING HARBOR ASIA CONFERENCES Frontiers in Bioinformatics, 2013
    • Place of Presentation
      Suzhou, China
    • Invited
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] Integrated analysis of whole genome and whole transcriptome sequencing of HBV-associated hepatocellular carcinoma2013

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      COLD SPRING HARBOR CONFERENCES, The Biology of Genomes, 2013
    • Place of Presentation
      COLD SPRING HARBOR, USA
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data2013

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      Mutation Detection 2013
    • Place of Presentation
      Lake Louise, Canada
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data2013

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      Clinical Genomics & Informatics Europe conference & expo, 2013
    • Place of Presentation
      Lisbon, Portugal
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] A rank-based statistical test for measuring synergistic effects between two gene sets2010

    • Author(s)
      白石友一
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-10
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Predicting regulatory networks from large scale time-course microarray data under several stimulation conditions on MCF-7 cells2010

    • Author(s)
      白石友一
    • Organizer
      9th European Conference on Computational Biology
    • Place of Presentation
      Ghent, Belgium
    • Year and Date
      2010-09-27
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Arank-based statistical test for measuring synergistic effects between two gene sets2010

    • Author(s)
      白石友一
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会合同大会
    • Place of Presentation
      神戸・神戸ポートアイランド
    • Year and Date
      2010-12-10
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Predicting regulatory networks from large scale time-course microarray data under several stimulation conditions on MCF-7 cells2010

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      9th European Conference on Computational Biology
    • Place of Presentation
      Ghent, Belgium.
    • Year and Date
      2010-09-27
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Inferring cluster-based networks from differently stimulated multiple time-course gene expression data2009

    • Author(s)
      白石友一
    • Organizer
      17th Annual International conference on Intelligent Systems for Molecular Biology
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2009-06-29
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Inferring cluster-based networks from differently stimulated multiple time-course gene expression data2009

    • Author(s)
      Yuichi Shiraishi
    • Organizer
      17th Annual International conference on Intelligent Systems for Molecular Biology
    • Place of Presentation
      Stockholm, Sweden.
    • Year and Date
      2009-06-29
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Inferring cluster-based networks from differently stimulated multiple time-course gene expression data2009

    • Author(s)
      白石友一
    • Organizer
      2009年度統計関連学会連合大会
    • Place of Presentation
      京都
    • Year and Date
      2009-09-07
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] Statistical approaches for combining binary classifiers for multiclass classification2009

    • Author(s)
      白石友一
    • Organizer
      2009年度統計関連学会連合大会
    • Place of Presentation
      京都
    • Year and Date
      2009-09-08
    • Data Source
      KAKENHI-PROJECT-21700316
  • [Presentation] An empirical Bayesian framework for mutation detection from cancer genome sequencing data

    • Author(s)
      Yuichi Shiraishi, Yusuke Sato, Yusuke Okuno, Kenichi Yoshida, Yasunobu Nagata, Masashi Sanda, Seishi Ogawa, Satoru Miyano
    • Organizer
      2012 Sapporo Workshop on Machine Learning and Applications to Biology
    • Place of Presentation
      札幌
    • Invited
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] がんの病態,発病機序を理解するためのゲノム解析

    • Author(s)
      白石友一
    • Organizer
      第15回情報論的学習理論ワークショップ(IBIS2012)
    • Place of Presentation
      東京
    • Invited
    • Data Source
      KAKENHI-PROJECT-24700272
  • [Presentation] 第12回日本再生医療学会総会

    • Author(s)
      白石友一
    • Organizer
      がんゲノムにおける後天的変異を高感度に検出するための統計的手法について
    • Place of Presentation
      横浜
    • Invited
    • Data Source
      KAKENHI-PROJECT-24700272
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