Nakamura Yasukazu 中村保一

… Alternative Names

Researcher Number	60370920
Other IDs
Affiliation (Current)	2020: 国立遺伝学研究所, 情報研究系, 教授
Affiliation (based on the past Project Information) *help	2018: 国立遺伝学研究所, 生命情報研究センター, 教授 2017: 遺伝学研究所, 大量遺伝情報研究室, 教授 2012 – 2015: 国立遺伝学研究所, 生命情報研究センター, 教授 2008: Kazusa DNA Research Institute, 植物ゲノム研究部・植物ゲノム情報研究室, 特別客員研究員 2008: 財団法人かずさDNA研究所, 植物ゲノム研究部・植物ゲノム情報研究室, 室長 … More
Review Section/Research Field	Principal Investigator 基礎ゲノム科学 Except Principal Investigator Biological Sciences
Keywords	Principal Investigator タンパク質遺伝子コード領域 / 遺伝子発見 / 配列パターン解析 / コドン使用傾向 / ゲノム塩基配列解析 Except Principal Investigator 次世代DNAシーケンサー / リシーケンシング / マメ科植物 / ミヤコグサ / 根粒菌 … More

先進ゲノム解析研究推進プラットフォームOngoing
- Principal Investigator(Support)
  
  小原雄治
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Evolutionary and molecuar genetic studies to logics in plant development
- Principal Investigator
  
  Kohchi Takayuki
- Project Period (FY)
  2013 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Comprehensive analysis of interactions between plants and microbes
- Principal Investigator
  
  TABATA Satoshi
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kazusa DNA Research Institute
Comprehensive analysis of characteristic sequence patterns among protein-coding regionsPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Yasukazu
- Project Period (FY)
  2005 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Kazusa DNA Research Institute

All 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2008 2005 Other

All Journal Article Presentation

[Journal Article] Malignant paraganglioma of the posterior mediastinum : A case report with genetic analysis2019
- Author(s)
  Adachi Y., Mita H., Sasaki Y., Himori R., Onodera K., Nakamura M., Kikuchi T., Yamashita K., Yoshida Y., Ishii Y., Endo T.
- Journal Title
  
  Mol Clin Oncol
  
  Volume: 10 Pages: 10-16
- DOI
  10.3892/mco.2018.1758
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment2018
- Author(s)
  Ikawa, H., Chen, C.P., Sikma, M., Yoshimoto, M., Sakai, H., Tokida, T., Usui, Y., Nakamura, H., Ono, K., Maruyama, M., Watanabe, T., Kuwagata, T., and Hasegawa, T.
- Journal Title
  
  Global Change Biology
  
  Volume: 24 Pages: 1321-1341
- DOI
  10.1111/gcb.13981
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03896, KAKENHI-PROJECT-16H06279
[Journal Article] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2018
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 6 Pages: 1037-1039
- DOI
  10.1093/bioinformatics/btx713
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Characterization of β-Glucuronidase-Positive Escherichia coli 0157 : H7 Producing Stx2a.2018
- Author(s)
  Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato MP, Gotoh Y, Itoh T, Toyoda A, Ohnishi M, Hayashi T.
- Journal Title
  
  Emerg Infect Dis.
  
  Volume: 24 Pages: 2219-2227
- DOI
  10.3201/eid2412.180404
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Insights into land plant evolution garnered from the Marchantia polymorpha genome2017
- Author(s)
  Bowman J, Kouchi T,..(106名）..Yokoyama R, ..(4名)
- Journal Title
  
  Cell.
  
  Volume: 171 Pages: 287-304
- DOI
  10.1016/j.cell.2017.09.030
- NAID
  120006353839
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07389, KAKENHI-PROJECT-16K07398, KAKENHI-PROJECT-16K14742, KAKENHI-PROJECT-17K19374, KAKENHI-PROJECT-17K19412, KAKENHI-PROJECT-17K17595, KAKENHI-PROJECT-15KK0254, KAKENHI-INTERNATIONAL-15K21750, KAKENHI-PLANNED-15H05956, KAKENHI-PUBLICLY-16H01229, KAKENHI-PUBLICLY-16H01460, KAKENHI-PUBLICLY-17H05441, KAKENHI-PUBLICLY-17H05845, KAKENHI-WRAPUP-17H06066, KAKENHI-PLANNED-17H06472, KAKENHI-PLANNED-25113005, KAKENHI-PLANNED-25113009, KAKENHI-PROJECT-25221103, KAKENHI-PROJECT-17H01437, KAKENHI-PROJECT-15H04382, KAKENHI-PROJECT-15H04386, KAKENHI-PROJECT-15H04391, KAKENHI-PROJECT-15H04628, KAKENHI-PROJECT-17H07333, KAKENHI-PROJECT-16J04519, KAKENHI-PROJECT-15K07104, KAKENHI-PROJECT-16K13087, KAKENHI-INTERNATIONAL-15K21758, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-17H05841, KAKENHI-PROJECT-17H03691, KAKENHI-PROJECT-17H03967
[Journal Article] Genomic characterization reconfirms the taxonomic status of <i>Lactobacillus parakefiri</i>2017
- Author(s)
  Yasuhiro TANIZAWA, Hisami KOBAYASHI, Eli KAMINUMA, Mitsuo SAKAMOTO, Moriya OHKUMA, Yasukazu NAKAMURA, Masanori ARITA, Masanori TOHNO
- Journal Title
  
  Bioscience of Microbiota, Food and Health
  
  Volume: 36 Issue: 3 Pages: 129-134
- DOI
  10.12938/bmfh.16-026
- NAID
  130005759236
- ISSN
  2186-3342
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Centromere evolution and CpG methylation during vertebrate speciation2017
- Author(s)
  Ichikawa K, Tomioka S, Suzuki Y, Nakamura R, Doi K, Yoshimura J, Kumagai M, Inoue Y, Uchida Y, Irie N, Takeda H, Morishita S.
- Journal Title
  
  Nature Communications
  
  Volume: 1833 Pages: 1722-1730
- DOI
  10.1038/s41467-017-01982-7
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06387, KAKENHI-PROJECT-15H05603, KAKENHI-PROJECT-15J03645, KAKENHI-PROJECT-16H06279
[Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing.2017
- Author(s)
  Yamaguchi T, Hosomichi K, Yano K, Kim YI, Nakaoka H, Kimura R, Otsuka H, Nonaka N, Haga S, Takahashi M, Shirota T, Kikkawa Y, Yamada A, Kamijo R, Park SB, Nakamura M, Maki K, Inoue I.
- Journal Title
  
  Human Genom Variation
  
  Volume: 印刷中 Pages: 1005-1005
- DOI
  10.1038/hgv.2017.5
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06502, KAKENHI-PROJECT-15H02373, KAKENHI-PROJECT-15H05016, KAKENHI-PROJECT-26430195, KAKENHI-PROJECT-15K20367, KAKENHI-PROJECT-15K11051, KAKENHI-PROJECT-16K15782, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19804, KAKENHI-PROJECT-17K17089, KAKENHI-PROJECT-25251043, KAKENHI-PROJECT-16K15843
[Journal Article] Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish2017
- Author(s)
  Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Hiroto S, Fukushima, Shinichi Morishita, Hiroyuki Takeda
- Journal Title
  
  PLOS Genetics
  
  Volume: 13 Issue: 12
- DOI
  10.1371/journal.pgen.1007123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017
- Author(s)
  Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Shinichi Morishita and Hiroyuki Takeda
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 10 Pages: 44-44
- DOI
  10.1186/s13072-017-0152-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20975, KAKENHI-PROJECT-16H06279
[Journal Article] <b>Methods for analyzing next-generation sequencing dataVI. genome assembly </b>2017
- Author(s)
  谷澤靖洋、神沼英里、中村保一、清水謙多郎、門田幸二
- Journal Title
  
  Japanese Journal of Lactic Acid Bacteria
  
  Volume: 27 Issue: 1 Pages: 41-52
- DOI
  10.4109/jslab.27.41
- NAID
  130005628247
- ISSN
  1343-327X, 2186-5833
- Year and Date
  2017-04-26
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] The naming of names: Guidelines for gene nomenclature in Marchantia2016
- Author(s)
  Bowman, J., Araki, T., Arteaga-Vazquez, M., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S.S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K.T., Zachgo, S., and Kohchi, T.
- Journal Title
  
  Plant Cell Physiol
  
  Volume: 57 Pages: 257-261
- DOI
  10.1093/pcp/pcv193
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26650102, KAKENHI-INTERNATIONAL-15K21758, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114003, KAKENHI-PLANNED-24114009, KAKENHI-PLANNED-25113005, KAKENHI-PLANNED-25113009, KAKENHI-PROJECT-15H04382, KAKENHI-PROJECT-24370022, KAKENHI-PROJECT-24370024, KAKENHI-PLANNED-25113004, KAKENHI-PLANNED-25113007, KAKENHI-PLANNED-25113002, KAKENHI-PROJECT-25221103, KAKENHI-PROJECT-15H04628
[Journal Article] Japanese Consortium for Amyotrophic Lateral Sclerosis Research (JaCALS). Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort.2016
- Author(s)
  Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
- Journal Title
  
  Neurobiol Aging.
  
  Volume: 39 Pages: 219-219
- DOI
  10.1016/j.neurobiolaging.2015.11.030
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K19485, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25461277, KAKENHI-PROJECT-15K15337, KAKENHI-PROJECT-26670439, KAKENHI-PROJECT-26670445, KAKENHI-PROJECT-25860725, KAKENHI-PROJECT-25293207, KAKENHI-ORGANIZER-26117001, KAKENHI-PROJECT-15H05667, KAKENHI-PROJECT-26461319
[Journal Article] DFAST and DAGA: web-based integrated genome annotation tools and resources2016
- Author(s)
  Tanizawa Y, Fujisawa T, Kamimuma E, Nakamura Y, Arita M.
- Journal Title
  
  Bioscience of Microbiota, Food and Health
  
  Volume: 35 Issue: 4 Pages: 173-184
- DOI
  10.12938/bmfh.16-003
- NAID
  130005250038
- ISSN
  2186-3342
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Genome-wide association study of clinically-defined gout identifies multiple risk loci and its association with clinical subtypes2016
- Author(s)
  Matsuo H, et al.
- Journal Title
  
  Annals of the Rheumatic Diseases
  
  Volume: 印刷中 Pages: 625-659
- DOI
  10.1136/annrheumdis-2014-206191
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-24390217, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-24590457, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-15K05577
[Journal Article] Assessing Cell-to-Cell DNA Methylation Variability on Individual Long Reads.2016
- Author(s)
  Qu W, Tsukahara T, Nakamura R, Yurino H, Hashimoto S, Tsuji S, Takeda H, Morishita S.
- Journal Title
  
  Sci Rep.
  
  Volume: 6 Pages: 21317-21317
- DOI
  10.1038/srep21317
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015
- Author(s)
  Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: pcv193
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015
- Author(s)
  Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.
- Journal Title
  
  BMC Genomics
  
  Volume: 16(1) Pages: 978-978
- DOI
  10.1186/s12864-015-2198-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25290071
[Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria.2015
- Author(s)
  Fares-Taie, L. Gerber, S. Tawara, A. Ramirez-Miranda, A. Douet, J. Y. Verdin, H. Guilloux, A. Zenteno, J. C. Kondo, H. Moisset, H. Passet, B. Yamamoto, K. Iwai, M. Tanaka, T. Nakamura, Y. Kimura, W. Bole-Feysot, C. Vilotte, M. Odent, S. Vilotte, J. L. Munnich, A. Regnier, A. Chassaing, N. et al.
- Journal Title
  
  Am J Hum Genet.
  
  Volume: 96 Pages: 631-639
- DOI
  10.1016/j.ajhg.2015.01.014
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25462743, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-221S0002
[Journal Article] DNA data bank of Japan (DDBJ) progress report.2015
- Author(s)
  Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: gkv1105
- DOI
  10.1093/nar/gkv1105
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] New Susceptibility Gene, IKZF1, for Cold Medicine–Related Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis with Severe Mucosal Involvements.2015
- Author(s)
  Ueta M, Sawai H, Sotozono C, Hitomi Y, Kaniwa N, Kim MK, Seo KY, Yoon KC, Joo CK, Kannabiran C, Wakamatsu TH, Sangwan V, Rathi V, Basu S, Ozeki T, Mushiroda T, Sugiyama E, Maekawa K, Nakamura R, Aihara M, Matsunaga K, Sekine A, Gomes JÁP, Hamuro J, Saito Y, Kubo M, Kinoshita S, Tokunaga K.
- Journal Title
  
  J Allergy Clin Immunol
  
  Volume: 未定 Pages: 03744-0
- DOI
  10.1016/j.jaci.2014.12.1916
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22133008, KAKENHI-PROJECT-25293355, KAKENHI-PROJECT-25460082, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25462637
[Journal Article] Common dysfunctional variants of ABCG2 have strong impact on hyperuricemia progression than typical environmental risk factors.2014
- Author(s)
  Nakayama A, et al.
- Journal Title
  
  Sci Rep
  
  Volume: 4 Pages: 5227-5227
- DOI
  10.1038/srep05227
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes2014
- Author(s)
  Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
- Journal Title
  
  BMC Genomics
  
  Volume: 15 Pages: 699-699
- DOI
  10.1186/1471-2164-15-699
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25670271, KAKENHI-PROJECT-26870328, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128008
[Journal Article] A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster.2014
- Author(s)
  K. Nakamura, M. R. Islam, M. Takayanagi, H. Yasumuro, W. Inami, A. Kunahong, R. M. Casco-Robles, F. Toyama and C. Chiba
- Journal Title
  
  PLoS ONE
  
  Volume: 9
- DOI
  10.1371/journal.pone.0109831
- NAID
  120005496692
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] Origin of methane is serpentinite-hosted hydrothermal systems: the CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring.2014
- Author(s)
  Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
- Journal Title
  
  Earth Planetary Sci. Lett.
  
  Volume: 386 Pages: 112-125
- DOI
  10.1016/j.epsl.2013.11.001
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PLANNED-21109004, KAKENHI-PLANNED-21109006, KAKENHI-PROJECT-23224013, KAKENHI-PROJECT-23244084, KAKENHI-PROJECT-25400524, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106002
[Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014
- Author(s)
  Sakiyama M, et al.
- Journal Title
  
  Drug Metabolism and Pharmacokinetics
  
  Volume: 29(6) Issue: 6 Pages: 490-2
- DOI
  10.2133/dmpk.dmpk-14-sc-041
  10.2133/dmpk.DMPK-14-SC-041
- NAID
  130004463408
- ISSN
  1347-4367, 1880-0920
- Language
  English
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates.2014
- Author(s)
  Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
- Journal Title
  
  Development
  
  Volume: 141 Pages: 2568-2580
- DOI
  10.1242/dev.108548
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-221S0002, KAKENHI-ORGANIZER-22127001
[Journal Article] ABCG2 dysfunction causes hyperuricemia due to both renal urate underexcretion and renal urate overload.2014
- Author(s)
  Matsuo, H.　Nakayama, A.　Sakiyama, M.　et al.
- Journal Title
  
  Sci Rep.
  
  Volume: 4：3755 Pages: 3755-3755
- DOI
  10.1038/srep03755
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-23300365, KAKENHI-PROJECT-23591205, KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration.2014
- Author(s)
  Islam, M.R., Nakamura, K., Casco-Robles, M.M., Kunahong, A., Inami, W., Toyama, F., Maruo, F. and Chiba, C.
- Journal Title
  
  Sci Rep
  
  Volume: 4, 6043 Pages: 6043-6043
- DOI
  10.1038/srep06043
- NAID
  120005477902
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14F04097, KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor.2014
- Author(s)
  S. Kanda, T. Ohmori, A. Taguchi, K. Kudo, T. Horiuchi, Y. Sato, S. Hino, Y. Suzuki, M. Sander, S. Sugano, M. Nakao, and R. Nishinakamura.
- Journal Title
  
  J Am Soc Nephrol
  
  Volume: 25 Pages: 2584-2595
- DOI
  10.1681/asn.2013080896
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-23116009, KAKENHI-PROJECT-23390228, KAKENHI-PUBLICLY-25111725, KAKENHI-PROJECT-25430178, KAKENHI-PROJECT-25870536, KAKENHI-PROJECT-26860640, KAKENHI-PROJECT-221S0002
[Journal Article] DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.2013
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Morizaki, S., Sugawara, H., Ohyanagi, H., Kurata, N., Okubo, K., Takagi, T., Kaminuma, E., Nakamura, Y.
- Journal Title
  
  DNA Res.
  
  Volume: 20 Pages: 383-390
- DOI
  10.1093/dnares/dst017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25252005, KAKENHI-PROJECT-221S0002
[Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012
- Author(s)
  Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Pages: 745-746
- DOI
  10.1093/bioinformatics/bts031
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012
- Author(s)
  Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 13
- DOI
  10.1186/1471-2105-13-s17-s8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
[Journal Article] Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in Japanese.2012
- Author(s)
  Nakamura M
- Journal Title
  
  Am. J. Hum. Genet.
  
  Volume: 91 Pages: 721-728
- DOI
  10.1016/j.ajhg.2012.08.010
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22590344, KAKENHI-PROJECT-22590725, KAKENHI-PROJECT-22590748, KAKENHI-PROJECT-23591014, KAKENHI-PROJECT-23790781, KAKENHI-PROJECT-24390187, KAKENHI-PROJECT-24591867, KAKENHI-PROJECT-24790728, KAKENHI-PLANNED-22133008, KAKENHI-PROJECT-221S0002
[Journal Article] A large scale analysis of protein-protein interactions in the nitrogenfixing bacterium Mesorhizobium loti2008
- Author(s)
  Shimoda, Y., Shinpo, S., Kohara, M., Nakamura, Y., Tabata, S., Sato, S.
- Journal Title
  
  DNA Res. 15(1)
  
  Pages: 13-23
- Data Source
  KAKENHI-PROJECT-17018041
[Journal Article] The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotusjaponicus root nodules2005
- Author(s)
  Krusell, L., Krause, K., Ott, T., Desbrosses, G., Kraemer, U., Sato, S., Nakamura, Y., Tabata, S., James, E.K., Sandal, N et al.
- Journal Title
  
  Plant Cell 17
  
  Pages: 1625-1636
- Data Source
  KAKENHI-PROJECT-17018041
[Presentation] ゼニゴケMarchantiapolymorphaと珪藻Nitzschiasp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子、谷沢靖洋、中村保一, 他
- Organizer
  第60回植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2019
- Author(s)
  谷沢靖洋、藤澤貴智、有田正規、中村保一
- Organizer
  第13回ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Database for the Chromosome-Level Assembly for a Liverwort Marchantia polymorpha2019
- Author(s)
  Nakamura, Y., Tanizawa, Y., Mochizuki, T., et al.
- Organizer
  Plant and Animal Genomics 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケMarchantia polymorphaと珪藻Nitzschia sp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子, 谷澤靖洋, 山岡尚平, 西浜竜一, 金澤建彦, 上田貴志, 大和勝幸, 河内孝之, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第60回日本植物生理学会年会(名古屋)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケ・珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで2018
- Author(s)
  望月孝子、谷沢靖洋、中村保一
- Organizer
  第1回植物インフォマティックス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Hideki Nagasaki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  Plant and Animal Genome XXVI
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第12回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Both common and rare genetic variants of ABCG2 are risks for gout2018
- Author(s)
  Higashino T, Takada T, Nakaoka H, Toyoda Y, Stiburkova B, Miyata H, Ikebuchi Y, Nakashima H, Shimizu S, Kawaguchi M, Sakiyama M, Nakayama A, Akashi A, Tanahashi Y, Kawamura Y, Nakamura T, Wakai K, Okada R, Yamamoto K, Hosomichi K, Hosoya T, Ichida K, Ooyama H, Suzuki H, Inoue I, Merriman TR, Shinomiya N, Matsuo H.
- Organizer
  European Human Genetics Conference 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 精原細胞期と成熟卵母細胞期のマウス生殖細胞への放射線照射は子どものゲノムに小さなサイズの欠失とマルチサイト変異を誘発する2018
- Author(s)
  佐藤康成、Kuo Tony、瀬々潤、西村まゆみ、島田義也、中村典、内村有邦
- Organizer
  日本放射線影響学会第61回大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T, Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2018
- Author(s)
  谷沢靖洋、藤澤貴智、中村保一
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第91回日本細菌学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 網羅的遺伝子構造予測自動アノテーションパイプラインの開発2018
- Author(s)
  篠田恭寛, 梶谷嶺, 小林史弥, 高橋和希, 中村優太, 湯淺英知, 伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Development of Marchantia Gene Nomenclature Database2018
- Author(s)
  Yasuhiro Tanizawa, Takako Mochizuki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] THE COMPLETE GENOME OF A NON-PHOTOSYNTHETIC DIATOM AND ITS PLASTIDAL SULFOLIPID BIOSYNTHESIS2018
- Author(s)
  Kamikawa R, Oyama K, Tanizawa Y, Mochizuki T, Nakayama T, Tanifuji, G, Nakamura Y, Kato M, Miyashita H
- Organizer
  ISOP/PSA
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : ゼニゴケゲノムデータベースの構築2018
- Author(s)
  望月孝子、谷澤靖洋、長崎英樹、山岡尚平、西浜竜一、金澤建彦、上田貴志、大和勝幸、河内孝之、中村保一
- Organizer
  第59回日本植物生理学会年会(札幌)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Genome Database for Marchantia polymorpha2017
- Author(s)
  Y Tanizawa, T Mochizuki, Y Nakamura
- Organizer
  The 65th NIBB Conference : Renaissance of Marchantia polymorpha
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Towards Better Genome Annotation.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Symposium on "Genome Evolution at Mishima"(GEM)
- Place of Presentation
  三島
- Year and Date
  2017-03-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Biology of a picoeukaryotic phytoplankton, Parmales(Bolidophyceae), a sister group of diatoms2017
- Author(s)
  桑田晃, 一宮睦雄, 吉川伸哉, 山田和正, 河地正伸, Mary-Hélène Noël, 斉藤憲治, 中村洋路, 沢田健, Adriana Lopes dos Santos, Daniel Vaulot
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-wide association study of clinically defined gout and subtypes identifies multiple susceptibility loci including transporter genes.2017
- Author(s)
  Hirotaka Matsuo, Nakayama Akiyoshi, Hirofumi Nakaoka, Ken Yamamoto, Masayuki Sakiyama, Amara Shaukat, Yu Toyoda, Yukinori Okada, Yoichiro Kamatani, Masahiro Nakatochi, Takahiro Nakamura, Tappei Takada, Katsuhisa Inoue, Hiroshi Nakashima, Seiko Shimizu, Kawaguchi Makoto, Asahi Hishida, Kenji Wakai, Blanka Stiburkova, Lisa K. Stamp, Nicola Dalbeth, Tatsuo Hosoya, Ituro Inoue, Atsushi Takahashi, Michiaki Kubo, Hiroshi Ooyama, Toru Shimizu, Kimiyoshi Ichida, Tony R. Merriman, Nariyoshi Shinomiya
- Organizer
  67th Annual Meeting of the American Society of Human Genetics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Organizer
  The 28th International Conference on Genome Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST-Toward faster genome publication.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Advanced Genome Science International Symposium “The Start of New Genomics”
- Place of Presentation
  東京
- Year and Date
  2017-01-10
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST : Toward faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, M Arita, Y Nakamura
- Organizer
  NIG International Symposium 2017 Commemorationg the 30th Anniversary of DDBJ. Life, Environment, and Evolution Revealed by Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] パルマ藻Triparma Iaevisの細胞壁形成機構の解析2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 一柳紀凛, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Morphological and transcriptome analysis in cell wall formation of Triparma laevis2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キットNextera XTによるシーケンスバイアスと細菌のGC含量の関係2017
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  NGS現場の会第5回研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 「Gef-seqに対応したマッピングプログラムおよびGUIの開発」2015
- Author(s)
  松本秀太・中村建介
- Organizer
  第９回　日本ゲノム微生物学会年会
- Place of Presentation
  神戸大学
- Year and Date
  2015-03-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015
- Author(s)
  Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
- Organizer
  57th ASH Annual Meeting
- Place of Presentation
  Orlando, FL, USA
- Year and Date
  2015-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated by the Research Communities (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  International Plant & Animal Genome XXII
- Place of Presentation
  サンディエゴ、米国
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第55回日本植物生理学会年会
- Place of Presentation
  富山大学
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Our Informatics Approaches for Marchantia Genome2013
- Author(s)
  Nagasaki H, Iida N, Nakamura Y.
- Organizer
  Marchantia IV
- Place of Presentation
  メルボルン、オーストラリア
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  JSBi2013
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] NGS由来大量データレポジトリDRAと解析支援パイプラインの提供2012
- Author(s)
  中村保一
- Organizer
  理研シンポジウム・データ駆動型生命情報科学の挑戦
- Place of Presentation
  仙台
- Year and Date
  2012-05-09
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] イルミナシーケンサーの配列特異的エラーについて2011
- Author(s)
  中村建介
- Organizer
  日本進化学会第13回大会
- Place of Presentation
  京都大学
- Year and Date
  2011-07-31
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサーのアーカイブDBとクラウド型データ解析システムの紹介2011
- Author(s)
  神沼英里、児玉悠一、猿橋智、望月孝子、長崎英樹、高木利久、大久保公策、中村保一
- Organizer
  第154回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-08-19
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads2011
- Author(s)
  Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  8th Solanaceae and 2nd Cucurbitaceae Joint Conference
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2011-11-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  SMBE2011 (Society of Molecular Biology and Evolution)
- Place of Presentation
  京都大学
- Year and Date
  2011-07-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  Functional Genomics and Systems Biology 2011 Wellcome Trust Scientific Conferences
- Place of Presentation
  Hinxton, Cambridge, UK
- Year and Date
  2011-11-30
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Takagi, T., Okubo, K., Kaminuma, E., Nakamura, Y.
- Organizer
  The 2nd International Conference on the Progress of "1000 Plant & Animal Reference Genomes Project"
- Place of Presentation
  Shenzhen, China
- Year and Date
  2011-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列のクラウド型パイプライン2011
- Author(s)
  長崎英樹, 望月孝子, 神沼英里, 渡邊成樹, 児玉悠一, 猿橋智, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  第52回日本植物生理学会年会
- Place of Presentation
  東北大学(宮城県仙台市)
- Year and Date
  2011-03-20
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 日本DNAデータバンク(DDBJ)での新規電算機システムによる超並列型シーケンサ由来の大規模塩基配列情報解析支援の試み2011
- Author(s)
  望月孝子, 児玉悠一, 猿橋智, 長崎英樹, 神沼英里, 菅原秀明, 大久保公策, 高木利久, 中村保一
- Organizer
  「生命情報科学若手の会」第2回研究会
- Place of Presentation
  国立遺伝学研究所(静岡県三島市)
- Year and Date
  2011-10-09
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud based pipeline for high-throughput analysis of next generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
- Organizer
  Plant and Animal Genome XIX Conference
- Place of Presentation
  San Diego, USA
- Year and Date
  2011-01-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列からのDNA多型注釈データベース構築系統識別ワークフローの開発2011
- Author(s)
  猿橋智、長崎英樹、望月孝子、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウト型解析パイプライン2011
- Author(s)
  猿橋智, 児玉悠一, 李慶範, 大城戸利久, 横山会美, 長崎英樹, 望月孝子, 神沼英里, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  NGS現場の会第1回研究会
- Place of Presentation
  熱海ニューフジヤホテル(静岡県熱海市)
- Year and Date
  2011-05-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列のクラウド型解析パイプラインDDBJ Pipeline進捗:de novoアセンブル配列注釈ワークフロー2011
- Author(s)
  長崎英樹、望月孝子、児玉悠一、猿橋智、高木利久、大久保公策、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  第148回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  農林水産先端技術研究所(茨城県つくば市)
- Year and Date
  2010-09-10
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列データ解析パイプライン2010
- Author(s)
  長崎英樹、望月孝子、神沼英里、渡邊成樹、児玉悠一、猿橋智、菅原秀明、高木利久、大久保公策、中村保一
- Organizer
  第33回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2010-12-07
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud computing based analytical tool for next-generation sequencing data2010
- Author(s)
  Yasukazu Nakamura, Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideki Nagasaki, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo
- Organizer
  Rice Annotation Project RAP7 meeting
- Place of Presentation
  東京国際交流館(東京都江東区)
- Year and Date
  2010-10-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A web-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2010)
- Place of Presentation
  Boston, USA
- Year and Date
  2010-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  NIASシンポジウム「イネ遺伝学・分子生物学ワークショップ2010」
- Place of Presentation
  つくば国際会議場(茨城県つくば市)
- Year and Date
  2010-07-02
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Annotation Pipeline-A cloud computing-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  The tenth Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics
- Place of Presentation
  Hinxton, UK
- Year and Date
  2010-09-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Yasukazu Nakamura, Hideki Nagasaki, Naoko Iida
- Organizer
  Expanding Frontiers of Genome Science II
- Place of Presentation
  一橋講堂
- Year and Date
  2015-01-20 – 2015-01-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ミヤコグサ根粒菌STM変異株の共生に関する表現型とタンパク質間相互作用情報を基にした新規共生関連遺伝子の機能類推
- Author(s)
  中務弘基、下田宣司、中村保一、田畑哲之、佐藤修正
- Organizer
  第32回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-17018041
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第56回日本植物生理学会年会
- Place of Presentation
  東京農業大学
- Year and Date
  2015-03-16 – 2015-03-18
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki Kimitsune Ishizaki Katsuyuki T. Yamato Takayuki Kohchi Yasukazu Nakamura
- Organizer
  International Plant & Animal Genome XXIII
- Place of Presentation
  San Diego, CA, USA
- Year and Date
  2015-01-10 – 2015-01-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort ゼニゴケゲノムアノテーションデータベースの構築
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第37回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2014-11-25 – 2014-11-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for the Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki, Naoko Iida, Yasukazu Nakamura
- Organizer
  Marchantia Workshop 2014
- Place of Presentation
  神戸大学
- Year and Date
  2014-12-08 – 2014-12-10
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002

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178. 神田祥一郎

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179. 谷川俊祐

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Nakamura Yasukazu 中村 保一

NAKAMURA Yasukazu 中村 保一

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先進ゲノム解析研究推進プラットフォームOngoing

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Project Period (FY)

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Evolutionary and molecuar genetic studies to logics in plant development

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Review Section

Research Institution

Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia

Principal Investigator

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Research Institution

Comprehensive analysis of interactions between plants and microbes

Principal Investigator

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Review Section

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Comprehensive analysis of characteristic sequence patterns among protein-coding regionsPrincipal Investigator

Principal Investigator

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Research Institution

[Journal Article] Malignant paraganglioma of the posterior mediastinum : A case report with genetic analysis2019

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DOI

Data Source

[Journal Article] Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment2018

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DOI

Data Source

[Journal Article] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2018

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DOI

Data Source

[Journal Article] Genomic Characterization of β-Glucuronidase-Positive Escherichia coli 0157 : H7 Producing Stx2a.2018

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DOI

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[Journal Article] Insights into land plant evolution garnered from the Marchantia polymorpha genome2017

Author(s)

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DOI

NAID

Data Source

[Journal Article] Genomic characterization reconfirms the taxonomic status of <i>Lactobacillus parakefiri</i>2017

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NAID

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Data Source

[Journal Article] Centromere evolution and CpG methylation during vertebrate speciation2017

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DOI

Data Source

[Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing.2017

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[Journal Article] Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish2017

Author(s)

Journal Title

Nakamura Yasukazu 中村保一

NAKAMURA Yasukazu 中村保一

[Journal Article] New Susceptibility Gene, IKZF1, for Cold Medicine–Related Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis with Severe Mucosal Involvements.2015