Nakamura Yasukazu 中村保一

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NAKAMURA Yasukazu 中村保一

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Researcher Number	60370920
Other IDs	https://orcid.org/0000-0002-6782-5715
Affiliation (Current)	2025: 国立遺伝学研究所, 情報研究系, 教授
Affiliation (based on the past Project Information) *help	2021 – 2025: 国立遺伝学研究所, 情報研究系, 教授 2018: 国立遺伝学研究所, 生命情報研究センター, 教授 2017: 遺伝学研究所, 大量遺伝情報研究室, 教授 2012 – 2015: 国立遺伝学研究所, 生命情報研究センター, 教授 2008: Kazusa DNA Research Institute, 植物ゲノム研究部・植物ゲノム情報研究室, 特別客員研究員 … More 2008: 財団法人かずさDNA研究所, 植物ゲノム研究部・植物ゲノム情報研究室, 室長 2008: Kazusa DNA Research Institute, 植物ゲノム研究部・植物ゲノム情報研究室, 特別客員研究員 2007: Kazusa DNA Research Institute, 植物ゲノム研究部・植物ゲノム情報研究室, 室長 2007: 財団法人かずさディー・エヌ・エー研究所, 植物ゲノム研究部・植物ゲノム情報研究室, 室長 2006: (財)かずさDNA研究所, 植物ゲノム基盤研究部, 室長 2006: (財)かずさDNA研究所, 植物ゲノム研究部・植物ゲノム情報研究室, 室長 2005: (財)かずさDNA研究所, 植物遺伝子研究部, 主任研究員 2005: (財)かずさDNA研究所, 植物遺伝子研究部・植物遺伝子第一研究室, 主任研究員 Less
Review Section/Research Field	Principal Investigator 基礎ゲノム科学 Except Principal Investigator Basic Section 44020:Developmental biology-related / Basic Section 43050:Genome biology-related / Medium-sized Section 42:Veterinary medical science, animal science, and related fields / Biological Sciences / Biological Sciences
Keywords	Principal Investigator ゲノム塩基配列解析 / コドン使用傾向 / 配列パターン解析 / 遺伝子発見 / タンパク質遺伝子コード領域 Except Principal Investigator メタゲノム / エピゲノム / GWAS / リシーケンシング / 次世代DNAシーケンサー … More / アホロートル / リプログラミンング / 四肢再生 / スーパーコンピュータ / 空間的オミックス解析 / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / 空間解析 / シングルセル解析 / オミックス解析 / ゲノム / ネットワーク解析 / GH9B3 / 接木 / NbXCP1 / ベイジアンネットワーク / ベンサミアナゲノム / トランスレーショナルリサーチ / 糸球体障害 / 蛋白尿 / 慢性腎臓病 / ゲノムアノテーション / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / 新規ゲノム配列決定 / 背腹性 / 光形態形成 / 植物発生制御 / 植物環境応答 / 植物発生 / 苔類ゼニゴケ / 植物発生生物学 / 進化 / 発生・分化 / 発生制御 / 光受容体 / 分子遺伝学 / 発生分化 / 植物 / 陸上植物進化 / オーキシン / ゼニゴケ / 環境応答 / 有性生殖 / モデル生物 / 基部陸上植物 / 次世代DNAシーケンサ / インフォームドコンセント / 個人ゲノム / de novo配列決定 / ChIP-seq / RNA-seq / 窒素固定 / 共生 / タンパク質相互作用 / 共生窒素固定 / 根粒菌 / ミヤコグサ / マメ科植物 Less

アホロートル四肢再生における細胞分化リプログラミング機構の解明
- Principal Investigator
  
  佐藤伸
- Project Period (FY)
  2024 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 44020:Developmental biology-related
- Research Institution
  Okayama University
翻訳開始因子DAP5を軸とした腎糸球体障害の病態理解と応用
- Principal Investigator
  
  前田真吾
- Project Period (FY)
  2023 – 2027
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Review Section
  
  Medium-sized Section 42:Veterinary medical science, animal science, and related fields
- Research Institution
  The University of Tokyo
ベンサミアナタバコのゲノム解析に基づく植物の接木分子基盤解明
- Principal Investigator
  
  黒谷賢一
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 43050:Genome biology-related
- Research Institution
  Nagoya University
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Evolutionary and molecuar genetic studies to logics in plant development
- Principal Investigator
  
  Kohchi Takayuki
- Project Period (FY)
  2013 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2010 – 2015
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  National Institute of Genetics
Comprehensive analysis of interactions between plants and microbes
- Principal Investigator
  
  TABATA Satoshi
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kazusa DNA Research Institute
Comprehensive analysis of characteristic sequence patterns among protein-coding regionsPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Yasukazu
- Project Period (FY)
  2005 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  基礎ゲノム科学
- Research Institution
  Kazusa DNA Research Institute

[Book] Methods in Molecular Biology, Gene Prediction2019
- Author(s)
  Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, Yasukazu Nakamura
- Pages
  215-226
- Total Pages
  284
- Publisher
  Springer Nature.
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] Gene Prediction Methods and Protocols2019
- Author(s)
  Tanizawa Y, Fujisawa T, Arita M, Nakamura Y.
- Pages
  215-226
- Total Pages
  283
- Publisher
  Humana, New York, NY
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] 次世代シークエンサーDRY解析教本改訂第2版2019
- Author(s)
  谷澤靖洋、中村保一
- Pages
  246-273
- Total Pages
  384
- Publisher
  学研プラス
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019
- Author(s)
  中村祐哉、山田拓司(福田真嗣編集)
- Pages
  107-111
- Total Pages
  147
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Neonatal skin dysbiosis to infantile atopic dermatitis: Mitigating effects of skin care2024
- Author(s)
  Aoyama Reika、Nakagawa Seitaro、Ichikawa Yoko、Inohara Naohiro、Yamazaki Yuriko、Ito Tomoka、Sugihira Takashi、Kono Michihiro、Akiyama Masashi、Takahashi Hiroki、Takaya Akiko、Ichikawa Fumitaka、Nakano Taiji、Tanaka Seiko、Koyano Yutaka、Fujimoto Manabu、Nunez Gabriel、Shimojo Naoki、Nakamura Yuumi
- Journal Title
  
  Allergy
  
  Volume: 0 Issue: 6 Pages: 1-5
- DOI
  10.1111/all.16095
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K19617, KAKENHI-PROJECT-20H03701, KAKENHI-PROJECT-22H04925
[Journal Article] Model systems for discovering evolutionary singularity of bilaterian physiological regulation: lessons from studies on simple/primitive flatworms2024
- Author(s)
  Mori Shunsuke、Kobayashi Aoshi、Sakamoto Hirotaka、Hamada Mayuko、Sakamoto Tatsuya、Nakamura Ryo
- Journal Title
  
  Biophysics and Physicobiology
  
  Volume: 21 Issue: Supplemental Pages: n/a
- DOI
  10.2142/biophysico.bppb-v21.s012
- ISSN
  2189-4779
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06289, KAKENHI-PROJECT-22K19312, KAKENHI-WRAPUP-23H05421, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K21320
[Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023
- Author(s)
  Kobayashi Y, Niida A, Nagayama S, Saeki K, （中略）, Mizuno S, Kawazu M, Kohsaka S, Ueno T, Mano H, Ishihara S, Uemura M, Mori M, Doki Y, Eguchi H, Oshima M, Suzuki Y, Shibata T, Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: 129 Issue: 7 Pages: 1105-1118
- DOI
  10.1038/s41416-023-02395-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07153, KAKENHI-PROJECT-21K12117, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02772, KAKENHI-PROJECT-21H02795, KAKENHI-PROJECT-23K24164
[Journal Article] A practical assembly guideline for genomes with various levels of heterozygosity2023
- Author(s)
  Takako Mochizuki、Mika Sakamoto、Yasuhiro Tanizawa、Takuro Nakayama、Goro Tanifuji、Ryoma Kamikawa、Yasukazu Nakamura
- Journal Title
  
  Briefings in Bioinformatics
  
  Volume: 24(6) Issue: 6
- DOI
  10.1093/bib/bbad337
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-19H03274, KAKENHI-PROJECT-23K21334
[Journal Article] GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level2023
- Author(s)
  Takeaki Taniguchi、Miki Okuno、Takahiro Shinoda、Fumiya Kobayashi、Kazuki Takahashi、Hideaki Yuasa、Yuta Nakamura、Hiroyuki Tanaka、Rei Kajitani、Takehiko Itoh
- Journal Title
  
  DNA Research
  
  Volume: 30(4) Issue: 4
- DOI
  10.1093/dnares/dsad017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K23861
[Journal Article] Genome Sequence and Analysis ofNicotiana benthamiana, the Model Plant for Interactions between Organisms2023
- Author(s)
 Kurotani Ken-ichi、Hirakawa Hideki、Shirasawa Kenta、Tanizawa Yasuhiro、Nakamura Yasukazu、Isobe Sachiko、Notaguchi Michitaka
- Journal Title
 
 Plant and Cell Physiology
 
 Volume: 64 Issue: 2 Pages: 248-257
- DOI
 10.1093/pcp/pcac168
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-22K06181
[Journal Article] Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs2023
- Author(s)
  Ban Hiroki、Sato Shinya、Yoshikawa Shinya、Yamada Kazumasa、Nakamura Yoji、Ichinomiya Mutsuo、Sato Naoki、Blanc-Mathieu Romain、Endo Hisashi、Kuwata Akira、Ogata Hiroyuki
- Journal Title
  
  Communications Biology
  
  Volume: 6 Issue: 1 Pages: 697-697
- DOI
  10.1038/s42003-023-05002-x
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-21H05309, KAKENHI-PROJECT-22H04925
[Journal Article] Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids2023
- Author(s)
  Nakamura Haruna、Aibara Mitsuto、Nikaido Masato
- Journal Title
  
  Genes Genet. Syst.
  
  Volume: 98 Issue: 2 Pages: 93-99
- DOI
  10.1266/ggs.23-00024
- ISSN
  1341-7568, 1880-5779
- Year and Date
  2023-04-01
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20KK0167, KAKENHI-PROJECT-22H04925
[Journal Article] A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae2023
- Author(s)
  Hiruma Kei、Aoki Seishiro、Takino Junya、Higa Takeshi、Utami Yuniar Devi、Shiina Akito、Okamoto Masanori、Nakamura Masami、Kawamura Nanami、Ohmori Yoshihiro、Sugita Ryohei、Tanoi Keitaro、Sato Toyozo、Oikawa Hideaki、Minami Atsushi、Iwasaki Wataru、Saijo Yusuke
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 5288-5288
- DOI
  10.1038/s41467-023-40867-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06317, KAKENHI-PLANNED-21H05150, KAKENHI-PLANNED-21H05152, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K26903
[Journal Article] ABA signaling converts stem cell fate by substantiating a tradeoff between cell polarity, growth and cell cycle progression and abiotic stress responses in the moss Physcomitrium patens2023
- Author(s)
  Marcel Pascal Beier, Chiyo Jinno, Natsumi Noda, Kohei Nakamura, Sumio Sugano, Yutaka Suzuki, Tomomichi Fujita
- Journal Title
  
  Frontiers in Plant Science
  
  Volume: 14 Pages: 1303195-1303195
- DOI
  10.3389/fpls.2023.1303195
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23K17399, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02516
[Journal Article] Identification of key yeast species and microbe-microbe interactions impacting larval growth of Drosophila in the wild2023
- Author(s)
  Ayumi Mure, Yuki Sugiura, Rae Maeda, Kohei Honda, Nozomu Sakurai, Yuuki Takahashi Masayoshi Watada, Toshihiko Katoh, Aina Gotoh, Yasuhiro Gotoh, Itsuki Taniguchi, Keiji Nakamura, Tetsuya Hayashi, Takane Katayama, Tadashi Uemura, and Yukako Hattori.
- Journal Title
  
  eLife
  
  Volume: 12
- DOI
  10.7554/elife.90148.3
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K06186, KAKENHI-PROJECT-22H04925
[Journal Article] ASPSCR1::TFE3 orchestrates the angiogenic program of alveolar soft part sarcoma2023
- Author(s)
  Tanaka Miwa、Chuaychob Surachada、Homme Mizuki、Yamazaki Yukari、Lyu Ruyin、Yamashita Kyoko、Ae Keisuke、Matsumoto Seiichi、Kumegawa Kohei、Maruyama Reo、Qu Wei、Miyagi Yohei、Yokokawa Ryuji、Nakamura Takuro
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1
- DOI
  10.1038/s41467-023-37049-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K18319, KAKENHI-PROJECT-22H04925
[Journal Article] Further notice of omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation2023
- Author(s)
  Yukari Tanaka、Riu Yamashita、Junko Kawashima、Hiroshi Mori、Ken Kurokawa、Shinji Fukuda、Yasuhiro Gotoh、Keiji Nakamura、Tetsuya Hayashi、Yoshiyuki Kasahara、Yukuto Sato、Shin Fukudo
- Journal Title
  
  Journal of Gastroenterology
  
  Volume: 58 Issue: 4 Pages: 427-428
- DOI
  10.1007/s00535-022-01951-y
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Letter to the Editor: Genome Annotation MattersーFrom Genes to Phylogenetic Inferences2023
- Author(s)
  Chihiro Furumizu、Yasuhiro Tanizawa、Yasukazu Nakamura
- Journal Title
  
  Plant And Cell Physiology
  
  Volume: － Issue: 2 Pages: 181-184
- DOI
  10.1093/pcp/pcad151
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] A non-cell-autonomous circadian rhythm of bioluminescence reporter activities in individual duckweed cells2023
- Author(s)
  Watanabe Emiri、Muranaka Tomoaki、Nakamura Shunji、Isoda Minako、Horikawa Yu、Aiso Tsuyoshi、Ito Shogo、Oyama Tokitaka
- Journal Title
  
  Plant Physiology
  
  Volume: kiad218 Issue: 1 Pages: 677-688
- DOI
  10.1093/plphys/kiad218
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20J00255, KAKENHI-PROJECT-22KJ0706, KAKENHI-PROJECT-20K15861, KAKENHI-PROJECT-20K06342, KAKENHI-PROJECT-22H04925
[Journal Article] Comprehensive single-cell analysis demonstrates radiotherapy-induced infiltration of macrophages expressing immunosuppressive genes into tumor in esophageal squamous cell carcinoma2023
- Author(s)
  Oyoshi H, Du J, Sakai SA, Yamashita R, Okumura M, Motegi A, Hojo H, Nakamura M, Hirata H, Sunakawa H, Kotani D, Yano T, Kojima T, Nakamura Y, Kojima M, Suzuki A, Zenkoh J, Tsuchihara K, Akimoto T, Shibata A, Suzuki Y, Kageyama S. Shun-Ichiro
- Journal Title
  
  Science Advances
  
  Volume: 9 Issue: 50 Pages: 9096-9096
- DOI
  10.1126/sciadv.adh9069
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K18232, KAKENHI-PROJECT-21K07661, KAKENHI-PROJECT-21K07582, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K21749
[Journal Article] The Drosophila AWP1 ortholog Doctor No regulates JAK/STAT signaling for left?right asymmetry in the gut by promoting receptor endocytosis2023
- Author(s)
 Lai Yi-Ting、Sasamura Takeshi、Kuroda Junpei、Maeda Reo、Nakamura Mitsutoshi、Hatori Ryo、Ishibashi Tomoki、Taniguchi Kiichiro、Ooike Masashi、Taguchi Tomohiro、Nakazawa Naotaka、Hozumi Shunya、Okumura Takashi、Aigaki Toshiro、Inaki Mikiko、Matsuno Kenji
- Journal Title
 
 Development
 
 Volume: 150 Issue: 6
- DOI
 10.1242/dev.201224
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-21K06188, KAKENHI-PROJECT-21K07120, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02488
[Journal Article] Best practices for comprehensive annotation of neuropeptides of Gryllus bimaculatus2023
- Author(s)
  Takako Mochizuki、Mika Sakamoto、Yasuhiro Tanizawa、Hitomi Seike、Zhen Zhu、Yi Jun Zhou、Keisuke Fukumura、Shinji Nagata、Yasukazu Nakamura
- Journal Title
  
  Insects
  
  Volume: 14(2) Issue: 2 Pages: 121-121
- DOI
  10.3390/insects14020121
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20K21304, KAKENHI-PROJECT-21H02129
[Journal Article] Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome2023
- Author(s)
  Kurotani Ken-ichi、Hirakawa Hideki、Shirasawa Kenta、Tagiri Koya、Mori Moe、Ichihashi Yasunori、Suzuki Takamasa、Tanizawa Yasuhiro、Nakamura Yasukazu、Isobe Sachiko、Notaguchi Michitaka
- Journal Title
  
  BioRxiv
  
  Volume: -
- DOI
  10.1101/2023.09.03.556139
- Open Access
- Data Source
  KAKENHI-PROJECT-22K06181
[Journal Article] Murine breast cancers disorganize the liver transcriptome in a zonated manner2023
- Author(s)
  Alexis Vandenbon、Rin Mizuno、Riyo Konishi、Masaya Onishi、Kyoko Masuda、Yuka Kobayashi、Hiroshi Kawamoto、Ayako Suzuki、Chenfeng He、Yuki Nakamura、Kosuke Kawaguchi、Masakazu Toi、Masahito Shimizu、Yasuhito Tanaka、Yutaka Suzuki、Shinpei Kawaoka
- Journal Title
  
  Communications Biology
  
  Volume: 6(1) Issue: 1 Pages: 97-97
- DOI
  10.1038/s42003-023-04479-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H03451, KAKENHI-PROJECT-20K06609
[Journal Article] Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions2022
- Author(s)
  Horoiwa Mizuki、Nakamura Takashi、Yuasa Hideaki、Kajitani Rei、Ameda Yosuke、Sasaki Tetsuro、Taninaka Hiroki、Kikuchi Taisei、Yamakita Takehisa、Toyoda Atsushi、Itoh Takehiko、Yasuda Nina
- Journal Title
  
  Frontiers in Marine Science
  
  Volume: 8 Pages: 688139-688139
- DOI
  10.3389/fmars.2021.688139
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J21342, KAKENHI-PROJECT-16H06279
[Journal Article] A meta-analysis of genome-wide association studies using Japanese and Taiwanese has revealed novel loci associated with gout susceptibility2022
- Author(s)
  Chang Shun-Jen、Toyoda Yu、Kawamura Yusuke、Nakamura Takahiro、Nakatochi Masahiro、Nakayama Akiyoshi、et al.
- Journal Title
  
  Human Cell
  
  Volume: 35 Issue: 2 Pages: 767-770
- DOI
  10.1007/s13577-021-00665-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K23152, KAKENHI-PROJECT-20H00566, KAKENHI-PROJECT-20H00568, KAKENHI-PROJECT-21KK0173, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-23K21618, KAKENHI-PROJECT-22H04923
[Journal Article] Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation2022
- Author(s)
  Yukari Tanaka、Riu Yamashita、Junko Kawashima、Hiroshi Mori、Ken Kurokawa、Shinji Fukuda、Yasuhiro Gotoh、Keiji Nakamura、Tetsuya Hayashi、Yoshiyuki Kasahara、Yukuto Sato、Shin Fukudo
- Journal Title
  
  Journal of Gastroenterology
  
  Volume: 57 Issue: 10 Pages: 748-760
- DOI
  10.1007/s00535-022-01888-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu pufferfish2022
- Author(s)
 Kabir Ahammad、Ieda Risa、Hosoya Sho、Fujikawa Daigaku、Atsumi Kazufumi、Tajima Shota、Nozawa Aoi、Koyama Takashi、Hirase Shotaro、Nakamura Osamu、Kadota Mitsutaka、Nishimura Osamu、Kuraku Shigehiro、Nakamura Yasukazu、Kobayashi Hisato、Toyoda Atsushi、Tasumi Satoshi、Kikuchi Kiyoshi
- Journal Title
 
 Proceedings of the National Academy of Sciences
 
 Volume: 119 Issue: 23 Pages: 1901-1909
- DOI
 10.1073/pnas.2121469119
- Peer Reviewed / Open Access
- Data Source
 KAKENHI-PROJECT-22K05833, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K21282
[Journal Article] MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha2022
- Author(s)
 Kawamura Shogo、Romani Facundo、Yagura Masaru、Mochizuki Takako、Sakamoto Mika、Yamaoka Shohei、Nishihama Ryuichi、Nakamura Yasukazu、Yamato Katsuyuki T、Bowman John L、Kohchi Takayuki、Tanizawa Yasuhiro
- Journal Title
 
 Plant and Cell Physiology
 
 Volume: 63 Issue: 11 Pages: 1745-1755
- DOI
 10.1093/pcp/pcac129
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
 KAKENHI-PROJECT-22K19345, KAKENHI-PROJECT-20K15783, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00417, KAKENHI-PROJECT-20H03275, KAKENHI-PROJECT-21J15550, KAKENHI-PROJECT-17H07424, KAKENHI-PUBLICLY-22H04733, KAKENHI-ORGANIZER-19H05670, KAKENHI-PLANNED-19H05675
[Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation2021
- Author(s)
  Nakamura Haruna、Aibara Mitsuto、Kajitani Rei、Mrosso Hillary D J、Mzighani Semvua I、Toyoda Atsushi、Itoh Takehiko、Okada Norihiro、Nikaido Masato
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: in press Issue: 8 Pages: 3111-3125
- DOI
  10.1093/molbev/msab084
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20KK0167, KAKENHI-PROJECT-20J13861, KAKENHI-PROJECT-16H06279
[Journal Article] Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy2021
- Author(s)
  MASAKI NAKAMURA, SHUN-ICHIRO KAGEYAMA, MASAHIDE SEKI, AYAKO SUZUKI, MASAYUKI OKUMURA, HIDEHIRO HOJO, ATSUSHI MOTEGI and TETSUO AKIMOTO
- Journal Title
  
  ANTICANCER RESEARCH
  
  Volume: 41 Issue: 2 Pages: 829-834
- DOI
  10.21873/anticanres.14835
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15611, KAKENHI-PROJECT-16H06279
[Journal Article] Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy2021
- Author(s)
  Hiroki Yamaguchi, Shin Goto, Nao Takahashi, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Koichi Higashi, Hiroshi Mori, Yukio Nakamura, Arata Horii, Ken Kurokawa, Ichiei Narita
- Journal Title
  
  Nephrol Dial Transplant.
  
  Volume: ３６ Issue: 1 Pages: 75-86
- DOI
  10.1093/ndt/gfaa223
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K09372, KAKENHI-PROJECT-20K08628, KAKENHI-PROJECT-18K08234, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H03674
[Journal Article] CTCF looping is established during gastrulation in medaka embryos2021
- Author(s)
  Ryohei Nakamura, Yuichi Motai, Masahiko Kumagai, Candice L. Wike, Haruyo Nishiyama, Yoichiro Nakatani, Neva C. Durand, Shinichi Morishita, Hiroyuki Takeda, et al.
- Journal Title
  
  Genome Research
  
  Volume: 31 Issue: 6 Pages: 968-980
- DOI
  10.1101/gr.269951.120
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Collective nuclear behavior shapes bilateral nuclear symmetry for subsequent left-right asymmetric morphogenesis in Drosophila2021
- Author(s)
  Shin Dongsun、Nakamura Mitsutoshi、Morishita Yoshitaka、Eiraku Mototsugu、Yamakawa Tomoko、Sasamura Takeshi、Akiyama Masakazu、Inaki Mikiko、Matsuno Kenji
- Journal Title
  
  Development
  
  Volume: 148 Issue: 18 Pages: 1-12
- DOI
  10.1242/dev.198507
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H02488, KAKENHI-PROJECT-21K06188, KAKENHI-PROJECT-16H06279
[Journal Article] Sparsely methylated mitochondrial cell free DNA released from cardiomyocytes contributes to systemic inflammatory response accompanied by atrial fibrillation2021
- Author(s)
  Yamazoe Masahiro、Sasano Tetsuo、Ihara Kensuke、Takahashi Kentaro、Nakamura Wakana、Takahashi Naomi、Komuro Hiroaki、Hamada Satomi、Furukawa Tetsushi
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 5837-5837
- DOI
  10.1038/s41598-021-85204-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08536, KAKENHI-PROJECT-18H02803, KAKENHI-PROJECT-20J13923, KAKENHI-PROJECT-16H06279
[Journal Article] Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis2021
- Author(s)
  Hideaki Yuasa, Rei Kajitani, Yuta Nakamura, Kazuki Takahashi, Miki Okuno, Fumiya Kobayashi, Takahiro Shinoda, Atsushi Toyoda, Yutaka Suzuki, Nalinee Thongtham, Zac Forsman, Omri Bronstein, Davide Seveso, Enrico Montalbetti, Coralie Taquet, Gal Eyal, Nina Yasuda, Takehiko Itoh
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 4
- DOI
  10.1093/dnares/dsab012
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-16H06279
[Journal Article] Insights into the genomic evolution of insects from cricket genomes2021
- Author(s)
  Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen A. Barnett, Sumihare Noji, Taro Mito & Cassandra G. Extavour
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 733-733
- DOI
  10.1038/s42003-021-02197-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06184, KAKENHI-PROJECT-19K06691, KAKENHI-PROJECT-21K06121, KAKENHI-PROJECT-16H06279
[Journal Article] Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system2021
- Author(s)
  Miyuki Iwasaki Katsuyuki T. Yamato John L. Bowman Takayuki Kohchi et al
- Journal Title
  
  Current Biology
  
  Volume: 31 Issue: 24 Pages: 5522-5532.e7
- DOI
  10.1016/j.cub.2021.10.023
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16166, KAKENHI-PUBLICLY-20H04884, KAKENHI-ORGANIZER-20H05778, KAKENHI-PLANNED-20H05780, KAKENHI-PROJECT-21J15550, KAKENHI-PROJECT-21K06228, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H07424, KAKENHI-PROJECT-22KJ1701, KAKENHI-ORGANIZER-19H05670, KAKENHI-PLANNED-19H05675
[Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression2020
- Author(s)
  Ito Yoichiro、Terai Goro、Ishigami Misa、Hashiba Noriko、Nakamura Yasuyuki、Bamba Takahiro、Kumokita Ryota、Hasunuma Tomohisa、Asai Kiyoshi、Ishii Jun、Kondo Akihiko
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 48 Issue: 22 Pages: 13000-13012
- DOI
  10.1093/nar/gkaa1066
- NAID
  120006954873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K15734, KAKENHI-PROJECT-16H06279
[Journal Article] Staphylococcus Agr virulence is critical for epidermal colonization and associates with atopic dermatitis development2020
- Author(s)
  Nakamura Y, Takahashi H, Takaya A, Inoue Y, Katayama Y, Kusuya Y, Shoji T, Takada S, Nakagawa S, Oguma R, Saito N, Ozawa N, Nakano T, Yamaide F, Dissanayake E, Suzuki S, Villaruz A, Varadarajan S, Matsumoto M, Kobayashi T, Kono M, Sato Y, Akiyama M, Otto M, Matsue H, Nunez G, Shimojo N.
- Journal Title
  
  Sci Transl Med.
  
  Volume: 8 Issue: 551 Pages: 4068-4068
- DOI
  10.1126/scitranslmed.aay4068
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K16138, KAKENHI-PROJECT-18K07102, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H03701
[Journal Article] Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels.2020
- Author(s)
  Higashino T, Morimoto K, Nakaoka H, Toyoda Y, Kawamura Y, Shimizu S, Nakamura T, Hosomichi K, Nakayama A, Ooyama K, Ooyama H, Shimizu T, Ueno M, Ito T, Tamura T, Naito M, Nakashima H, Kawaguchi M, Takao M, Kawai Y, Osada N, Ichida K, Yamamoto K, Suzuki H, Shinomiya N, Inoue I, Takada T, Matsuo H.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 79(1) Issue: 1 Pages: 164-166
- DOI
  10.1136/annrheumdis-2019-216044
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KK0247, KAKENHI-PUBLICLY-19H05344, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H04128, KAKENHI-PROJECT-18H02685, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05511
[Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H282020
- Author(s)
  Nakamura K., Murase K., Sato MP., Toyoda A., Itoh T., Mainil JG., Pierard D., Yoshino S., Kimata K., Isobe J., Seto K., Etoh Y., Narimatsu H., Saito S., Yatsuyanagi J., Lee K., Iyoda S., Ohnishi M., Ooka T., Gotoh Y., Ogura Y., Hayashi T.
- Journal Title
  
  Microbial Genomics
  
  Volume: 6 Issue: 1
- DOI
  10.1099/mgen.0.000323
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K07116, KAKENHI-PROJECT-16H06279
[Journal Article] Combination of KRAS and SMAD4 mutations in formalin‐fixed paraffin‐embedded tissues as a biomarker for pancreatic cancer2020
- Author(s)
  Yokose Takahiro、Kitago Minoru、Matsuda Sachiko、Sasaki Yasushi、Masugi Yohei、Nakamura Yuki、Shinoda Masahiro、Yagi Hiroshi、Abe Yuta、Oshima Go、Hori Shutaro、Yusuke Fujita、Nakano Yutaka、Endo Yutaka、Abe Kodai、Tokino Takashi、Kitagawa Yuko
- Journal Title
  
  Cancer Science
  
  Volume: 111 Issue: 6 Pages: 2174-2182
- DOI
  10.1111/cas.14425
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-18K08552, KAKENHI-PROJECT-16H06279
[Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs2020
- Author(s)
  Udagawa Chihiro、Sasaki Yasushi、Tanizawa Yasuhiro、Suemizu Hiroshi、Ohnishi Yasuyuki、Nakamura Yasukazu、Tokino Takashi、Zembutsu Hitoshi
- Journal Title
  
  PLOS ONE
  
  Volume: 15 Issue: 9 Pages: e0239614-e0239614
- DOI
  10.1371/journal.pone.0239614
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin2020
- Author(s)
  Montgomery SA, Tanizawa Y, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Drouard L, Ekker H, Houng SF, Kohchi T, Lin SS, Liu LYD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F.
- Journal Title
  
  Current Biology
  
  Volume: 30 Issue: 4 Pages: 573-588
- DOI
  10.1016/j.cub.2019.12.015
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06285, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-19H04860, KAKENHI-PLANNED-19H05675, KAKENHI-PROJECT-17H07424
[Journal Article] Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2020
- Author(s)
  Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 37-37
- DOI
  10.1038/s41598-019-56881-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19340, KAKENHI-PROJECT-16H06279
[Journal Article] Maternal almondex, a neurogenic gene, is required for proper subcellular Notch distribution in early Drosophila embryogenesis.2020
- Author(s)
  Das P., Salazar J. L., Li-Kroeger D., Yamamoto S., Nakamura M., Sasamura T., Inaki M., Masuda W., Kitagawa M., Yamakawa T., Matsuno K.
- Journal Title
  
  Development, Growth & Differentiation
  
  Volume: 62 Issue: 1 Pages: 80-93
- DOI
  10.1111/dgd.12639
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07374, KAKENHI-INTERNATIONAL-15K21726, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16K08577
[Journal Article] Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea2020
- Author(s)
  Ishimaru Kai、Sasaki Mari、Narimatsu Hiroshi、Arimizu Yoko、Gotoh Yasuhiro、Nakamura Keiji、Hayashi Tetsuya、Ogura Yoshitoshi
- Journal Title
  
  Open Forum Infectious Diseases
  
  Volume: 7 Issue: 1
- DOI
  10.1093/ofid/ofaa021
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila.2019
- Author(s)
  Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Matsuyama, Y., and Matsuno, K.
- Journal Title
  
  Genes to Cells
  
  Volume: 24 (3) Issue: 3 Pages: 214-230
- DOI
  10.1111/gtc.12669
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-15H05856, KAKENHI-PROJECT-16J01027, KAKENHI-INTERNATIONAL-15K21726, KAKENHI-PLANNED-15H05863, KAKENHI-PROJECT-16H06279
[Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.2019
- Author(s)
  Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
- Journal Title
  
  DNA Res.
  
  Volume: 26 Issue: 5 Pages: 391-398
- DOI
  10.1093/dnares/dsz017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Malignant paraganglioma of posterior mediastinum; a case report with genetic analysis2019
- Author(s)
  Adachi Y, Mita H, Sasaki Y, Himori R, Onodera K, Nakamura M, Kikuchi T, Yamashita K, Yukinari Yoshida Y, Ishii Y, Endo T
- Journal Title
  
  Mol Clin Oncol
  
  Volume: 10 Pages: 10-16
- DOI
  10.3892/mco.2018.1758
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] O-antigen biosynthesis gene clusters of Escherichia albertii: their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method.2019
- Author(s)
  Ooka T, Seto K, Ogura Y, Nakamura K, Iguchi A, Gotoh Y, Honda M, Etoh Y, Ikeda T, Sugitani W, Konno T, Kawano K, Imuta N, Yoshiie K, Hara-Kudo Y, Murakami K, Hayashi T, Nishi J
- Journal Title
  
  Microb Genom
  
  Volume: 5（11） Issue: 11
- DOI
  10.1099/mgen.0.000314
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K10118, KAKENHI-PROJECT-16H05845, KAKENHI-PROJECT-16H06279
[Journal Article] Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice.2019
- Author(s)
  Nakajima K, Ono M, Radovic U, Dizdarevic S, Tomizawa SI, Kuroha K, Nagamatsu G, Hoshi I, Matsunaga R, Shirakawa T, Kurosawa T, Miyazaki Y, Seki M, Suzuki Y, Koseki H, Nakamura M, Suda T, Ohbo K.
- Journal Title
  
  Disease Models & Mechanisms
  
  Volume: 12 Pages: 40139-40139
- DOI
  10.1242/dmm.040139
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06261, KAKENHI-PROJECT-19K23831, KAKENHI-PROJECT-18H05284, KAKENHI-PROJECT-16H06279
[Journal Article] Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.2019
- Author(s)
  Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Dopfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y
- Journal Title
  
  Genome Research
  
  Volume: 29 Issue: 9 Pages: 1495-1505
- DOI
  10.1101/gr.249268.119
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K09183, KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2018
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 6 Pages: 1037-1039
- DOI
  10.1093/bioinformatics/btx713
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment2018
- Author(s)
  Ikawa, H., Chen, C.P., Sikma, M., Yoshimoto, M., Sakai, H., Tokida, T., Usui, Y., Nakamura, H., Ono, K., Maruyama, M., Watanabe, T., Kuwagata, T., and Hasegawa, T.
- Journal Title
  
  Global Change Biology
  
  Volume: 24 Issue: 3 Pages: 1321-1341
- DOI
  10.1111/gcb.13981
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03896, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Characterization of β-Glucuronidase?Positive Escherichia coli O157:H7 Producing Stx2a2018
- Author(s)
  Ogura Yoshitoshi、Seto Kazuko、Morimoto Yo、Nakamura Keiji、Sato Mitsuhiko P.、Gotoh Yasuhiro、Itoh Takehiko、Toyoda Atsushi、Ohnishi Makoto、Hayashi Tetsuya
- Journal Title
  
  Emerging Infectious Diseases
  
  Volume: 24 Issue: 12 Pages: 2219-2227
- DOI
  10.3201/eid2412.180404
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri2017
- Author(s)
  Yasuhiro TANIZAWA, Hisami KOBAYASHI, Eli KAMINUMA, Mitsuo SAKAMOTO, Moriya OHKUMA, Yasukazu NAKAMURA, Masanori ARITA, Masanori TOHNO
- Journal Title
  
  Biosci Microbiota Food Health.
  
  Volume: 36 Issue: 3 Pages: 129-134
- DOI
  10.12938/bmfh.16-026
- NAID
  130005759236
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.2017
- Author(s)
  Bowman J, Kouchi T,..(106名）..Yokoyama R, ..(4名)
- Journal Title
  
  Cell
  
  Volume: 171 Issue: 2 Pages: 287-304
- DOI
  10.1016/j.cell.2017.09.030
- NAID
  120006353839
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07389, KAKENHI-PROJECT-16K07398, KAKENHI-PROJECT-16K14742, KAKENHI-PROJECT-17K19374, KAKENHI-PROJECT-17K19412, KAKENHI-PROJECT-17K17595, KAKENHI-PROJECT-15KK0254, KAKENHI-INTERNATIONAL-15K21750, KAKENHI-PLANNED-15H05956, KAKENHI-PUBLICLY-16H01229, KAKENHI-PUBLICLY-16H01460, KAKENHI-PUBLICLY-17H05441, KAKENHI-PUBLICLY-17H05845, KAKENHI-WRAPUP-17H06066, KAKENHI-PLANNED-17H06472, KAKENHI-PLANNED-25113005, KAKENHI-PLANNED-25113009, KAKENHI-PROJECT-25221103, KAKENHI-PROJECT-17H01437, KAKENHI-PROJECT-15H04382, KAKENHI-PROJECT-15H04386, KAKENHI-PROJECT-15H04391, KAKENHI-PROJECT-15H04628, KAKENHI-PROJECT-17H07333, KAKENHI-PROJECT-16J04519, KAKENHI-PROJECT-15K07104, KAKENHI-PROJECT-16K13087, KAKENHI-INTERNATIONAL-15K21758, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-17H05841, KAKENHI-PROJECT-17H03691, KAKENHI-PROJECT-17H03967
[Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing2017
- Author(s)
  Yamaguchi T, Hosomichi K, Yano K, Kim Y, Nakaoka H, Kimura R, Otsuka H, Nonaka N, Haga S, Takahashi M, Shirota T, Kikkawa Y, Yamada A, Kamijo R, Park SB, Nakamura M, Maki K, Inoue I
- Journal Title
  
  Hum Genome Variation
  
  Volume: 印刷中 Issue: 1 Pages: 17005-17005
- DOI
  10.1038/hgv.2017.5
- NAID
  120006891152
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06502, KAKENHI-PROJECT-15H02373, KAKENHI-PROJECT-15H05016, KAKENHI-PROJECT-26430195, KAKENHI-PROJECT-15K20367, KAKENHI-PROJECT-15K11051, KAKENHI-PROJECT-16K15782, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19804, KAKENHI-PROJECT-17K17089, KAKENHI-PROJECT-25251043, KAKENHI-PROJECT-16K15843
[Journal Article] Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish2017
- Author(s)
  Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Hiroto S, Fukushima, Shinichi Morishita, Hiroyuki Takeda
- Journal Title
  
  PLOS Genetics
  
  Volume: 13 Issue: 12 Pages: e1007123-e1007123
- DOI
  10.1371/journal.pgen.1007123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Centromere evolution and CpG methylation during vertebrate speciation2017
- Author(s)
  Kazuki Ichikawa, Shingo Tomioka, Yuta Suzuki, Ryohei Nakamura, Koichiro Doi, Jun Yoshimura, Masahiko Kumagai, Yusuke Inoue, Yui Uchida, Naoki Irie, Hiroyuki Takeda* & Shinich Morishita*
- Journal Title
  
  Nature Communications
  
  Volume: 1833 Issue: 1 Pages: 1722-1730
- DOI
  10.1038/s41467-017-01982-7
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06387, KAKENHI-PROJECT-15H05603, KAKENHI-PROJECT-15J03645, KAKENHI-PROJECT-16H06279
[Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017
- Author(s)
  Nakamura Ryohei、Uno Ayako、Kumagai Masahiko、Morishita Shinichi、Takeda Hiroyuki
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 10 Issue: 1 Pages: 44-44
- DOI
  10.1186/s13072-017-0152-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20975, KAKENHI-PROJECT-16H06279
[Journal Article] Methods for analyzing next-generation sequencing dataVI. genome assembly 2016
- Author(s)
 谷澤靖洋、神沼英里、中村保一、清水謙多郎、門田幸二
- Journal Title
 
 Japanese Journal of Lactic Acid Bacteria
 
 Volume: 27 Issue: 1 Pages: 41-52
- DOI
 10.4109/jslab.27.41
- NAID
 130005628247
- ISSN
 1343-327X, 2186-5833
- Language
 Japanese
- Open Access
- Data Source
 KAKENHI-PROJECT-16H06279
[Journal Article] Assessing Cell-to-Cell DNA Methylation Variability on Individual Long Reads.2016
- Author(s)
  Qu W, Tsukahara T, Nakamura R, Yurino H, Hashimoto S, Tsuji S, Takeda H, Morishita S.
- Journal Title
  
  Sci Rep.
  
  Volume: 6 Issue: 1 Pages: 21317-21317
- DOI
  10.1038/srep21317
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] DFAST and DAGA: web-based integrated genome annotation tools and resources2016
- Author(s)
  Tanizawa Y, Fujisawa T, Kamimuma E, Nakamura Y, Arita M.
- Journal Title
  
  Bioscience of Microbiota, Food and Health
  
  Volume: 35 Issue: 4 Pages: 173-184
- DOI
  10.12938/bmfh.16-003
- NAID
  130005250038
- ISSN
  2186-3342
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Next-generation sequencing of 28 ALS-related genes in a Japanese ALS cohort2016
- Author(s)
  Ryoichi Nakamura, Jun Sone, Naoki Atsuta, Genki Tohnai, Hazuki Watanabe, Daichi Yokoi, Masahiro Nakatochi, Hirohisa Watanabe, Mizuki Ito, Jo Senda, Masahisa Katsuno, Fumiaki Tanaka, Yuanzhe Li, Yuishin Izumi, Mitsuya Morita, Akira Taniguchi, Osamu Kano, Masaya Oda, Satoshi Kuwabara, Koji Abe.
- Journal Title
  
  Neurobiology of Aging
  
  Volume: 39 Pages: 219-219
- DOI
  10.1016/j.neurobiolaging.2015.11.030
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15K19485, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25461277, KAKENHI-PROJECT-15K15337, KAKENHI-PROJECT-26670439, KAKENHI-PROJECT-26670445, KAKENHI-PROJECT-25860725, KAKENHI-PROJECT-25293207, KAKENHI-ORGANIZER-26117001, KAKENHI-PROJECT-15H05667, KAKENHI-PROJECT-26461319
[Journal Article] The Naming of Names: Guidelines for Gene Nomenclature in Marchantia2016
- Author(s)
  Bowman, J., Araki, T., Arteaga-Vazquez, M., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S.S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K.T., Zachgo, S., and Kohchi, T.
- Journal Title
  
  Plnat cell Physiology
  
  Volume: 57 Issue: 2 Pages: 257-261
- DOI
  10.1093/pcp/pcv193
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-26650102, KAKENHI-INTERNATIONAL-15K21758, KAKENHI-ORGANIZER-24114001, KAKENHI-PLANNED-24114003, KAKENHI-PLANNED-24114009, KAKENHI-PLANNED-25113005, KAKENHI-PLANNED-25113009, KAKENHI-PROJECT-15H04382, KAKENHI-PROJECT-24370022, KAKENHI-PROJECT-24370024, KAKENHI-PLANNED-25113004, KAKENHI-PLANNED-25113007, KAKENHI-PLANNED-25113002, KAKENHI-PROJECT-25221103, KAKENHI-PROJECT-15H04628
[Journal Article] Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.2015
- Author(s)
  Matsuo H, et al.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 印刷中 Issue: 4 Pages: 652-659
- DOI
  10.1136/annrheumdis-2014-206191
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-24390217, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-24590457, KAKENHI-PROJECT-15K15227, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-15H04315, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-25440254, KAKENHI-PROJECT-26461244
[Journal Article] IKZF1, a new susceptibility gene for cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis with severe mucosal involvement2015
- Author(s)
  Ueta M, Sawai H, Sotozono C, Hitomi Y, Kaniwa N, Kim MK, Seo KY, Yoon KC, Joo CK, Kannabiran C, Wakamatsu TH, Sangwan V, Rathi V, Basu S, Ozeki T, Mushiroda T, Sugiyama E, Maekawa K, Nakamura R, Aihara M, Matsunaga K, Sekine A, Gomes JÁP, Hamuro J, Saito Y, Kubo M, Kinoshita S, Tokunaga K.
- Journal Title
  
  J. Allergy Clin. Immunol.
  
  Volume: 135 Issue: 6 Pages: 1538
- DOI
  10.1016/j.jaci.2014.12.1916
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-22133008, KAKENHI-PROJECT-25293355, KAKENHI-PROJECT-25460082, KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25462637
[Journal Article] DNA data bank of Japan (DDBJ) progress report.2015
- Author(s)
  Mashima J, Kodama Y, Kosuge T, Fujisawa T, Katayama T, Nagasaki H, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T.
- Journal Title
  
  Nucleic Acids Res.
  
  Volume: gkv1105 Issue: D1 Pages: D51-D57
- DOI
  10.1093/nar/gkv1105
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.2015
- Author(s)
  Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.
- Journal Title
  
  BMC Genomics
  
  Volume: 16(1) Issue: 1 Pages: 978-978
- DOI
  10.1186/s12864-015-2198-5
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002, KAKENHI-PROJECT-25290071
[Journal Article] Submicroscopic deletions at 13q32.1 cause congenital microcoria2015
- Author(s)
  Fares-Taie, L. Gerber, S. Tawara, A. Ramirez-Miranda, A. Douet, J. Y. Verdin, H. Guilloux, A. Zenteno, J. C. Kondo, H. Moisset, H. Passet, B. Yamamoto, K. Iwai, M. Tanaka, T. Nakamura, Y. Kimura, W. Bole-Feysot, C. Vilotte, M. Odent, S. Vilotte, J. L. Munnich, A. Regnier, A. Chassaing, N. et al.
- Journal Title
  
  Am J Hum Genet
  
  Volume: 96 Issue: 4 Pages: 631-9
- DOI
  10.1016/j.ajhg.2015.01.014
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25462743, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-221S0002
[Journal Article] The naming of names: guidelines for gene nomenclature in Marchantia.2015
- Author(s)
  Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.
- Journal Title
  
  Plant Cell Physiol.
  
  Volume: pcv193
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Origin of methane in serpentinite-hosted hydrothermal systems: The CH4-H2-H2O hydrogen isotope systematics of the Hakuba Happo hot spring2014
- Author(s)
  Suda, K., Ueno, Y., Yoshizaki, M., Nakamura, H., Kurokawa, K., Nishiyama, E., Yoshino, K., Hongoh, Y., Kawachi, K., Omori, S., Yamada, K., Yoshida, N., Maruyama, S.
- Journal Title
  
  Earth and Planetary Science Letters
  
  Volume: 386 Pages: 112-125
- DOI
  10.1016/j.epsl.2013.11.001
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-21109004, KAKENHI-PLANNED-21109006, KAKENHI-PROJECT-23224013, KAKENHI-PROJECT-23244084, KAKENHI-PROJECT-25400524, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-26106002
[Journal Article] Ethnic Differences in ATP-binding Cassette Transporter, Sub-family G, Member 2 (ABCG2/BCRP): Genotype Combinations and Estimated Functions2014
- Author(s)
  Sakiyama M, et al.
- Journal Title
  
  Drug Metabolism and Pharmacokinetics
  
  Volume: 29 Issue: 6 Pages: 490-492
- DOI
  10.2133/dmpk.DMPK-14-SC-041
- NAID
  130004463408
- ISSN
  1347-4367, 1880-0920
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster2014
- Author(s)
  K. Nakamura, M. R. Islam, M. Takayanagi, H. Yasumuro, W. Inami, A. Kunahong, R. M. Casco-Robles, F. Toyama and C. Chiba
- Journal Title
  
  PLoS One
  
  Volume: 9 Issue: 10 Pages: e109831-e109831
- DOI
  10.1371/journal.pone.0109831
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] Common dysfunctional variants of ABCG2 have stronger impact on hyperuricemia progression than typical environmental risk factors.2014
- Author(s)
  Nakayama A, et al.
- Journal Title
  
  Sci Rep.
  
  Volume: 4 Issue: 1 Pages: 5227-5227
- DOI
  10.1038/srep05227
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-26461244, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] ABCG2 dysfunction causes hyperuricemia due to both renal urate underexcretion and renal urate overload2014
- Author(s)
  Matsuo, H.　Nakayama, A.　Sakiyama, M.　et al.
- Journal Title
  
  Sci Rep
  
  Volume: 4：3755 Issue: 1 Pages: 1-5
- DOI
  10.1038/srep03755
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23300365, KAKENHI-PROJECT-23591205, KAKENHI-PROJECT-23689008, KAKENHI-PROJECT-25293145, KAKENHI-PROJECT-25670307, KAKENHI-PROJECT-221S0001, KAKENHI-PROJECT-221S0002
[Journal Article] Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates2014
- Author(s)
  Nakamura, R., Tsukahara, T., Qu, W., Ichikawa, K., Otsuka, T., Ogoshi, K., Saito, T.L., Matsushima, K., Sugano, S., Hashimoto, S., Suzuki, Y., Morishita, S. & Takeda, H.
- Journal Title
  
  Development
  
  Volume: 141 Issue: 13 Pages: 2568-80
- DOI
  10.1242/dev.108548
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25291048, KAKENHI-PROJECT-221S0002, KAKENHI-ORGANIZER-22127001
[Journal Article] The newt reprograms mature RPE cells into a unique multipotent state for retinal regeneration2014
- Author(s)
  Islam, M.R., Nakamura, K., Casco-Robles, M.M., Kunahong, A., Inami, W., Toyama, F., Maruo, F. and Chiba, C.
- Journal Title
  
  Sci. Rep.
  
  Volume: 4, 6043 Issue: 1 Pages: 6043-6043
- DOI
  10.1038/srep06043
- NAID
  120007136627
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-14F04097, KAKENHI-ORGANIZER-22124001, KAKENHI-PROJECT-24240062, KAKENHI-PROJECT-221S0002
[Journal Article] Sall1 maintains nephron progenitors and nascent nephrons by acting as both an activator and a repressor2014
- Author(s)
  S. Kanda, T. Ohmori, A. Taguchi, K. Kudo, T. Horiuchi, Y. Sato, S. Hino, Y. Suzuki, M. Sander, S. Sugano, M. Nakao, and R. Nishinakamura.
- Journal Title
  
  J. Am. Soc. Nephrol.
  
  Volume: 25 Issue: 11 Pages: 2584-2595
- DOI
  10.1681/asn.2013080896
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-23116009, KAKENHI-PROJECT-23390228, KAKENHI-PUBLICLY-25111725, KAKENHI-PROJECT-25430178, KAKENHI-PROJECT-25870536, KAKENHI-PROJECT-26860640, KAKENHI-PROJECT-221S0002
[Journal Article] Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes.2014
- Author(s)
  Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S.
- Journal Title
  
  BMC Genomics
  
  Volume: 15 Issue: 1 Pages: 699-699
- DOI
  10.1186/1471-2164-15-699
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25670271, KAKENHI-PROJECT-26870328, KAKENHI-PROJECT-221S0002, KAKENHI-PLANNED-22128008
[Journal Article] DDBJ Read Annotation Pipeline: a cloud computing-based pipeline for high-throughput analysis of new-generation sequencing data.2013
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Morizaki, S., Sugawara, H., Ohyanagi, H., Kurata, N., Okubo, K., Takagi, T., Kaminuma, E., Nakamura, Y.
- Journal Title
  
  DNA Research
  
  Volume: 20 Issue: 4 Pages: 383-390
- DOI
  10.1093/dnares/dst017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-25252005, KAKENHI-PROJECT-221S0002
[Journal Article] COPICAT : A software system for predicting interactions between proteins and chemical compounds2012
- Author(s)
  Sakakibara, Y., Hachiya, T., Uchida, M., Nagamine, N., Sugawara, Y., Yokota, M., Nakamura, M., Popendorf, K., Komori, T., Sato, K.
- Journal Title
  
  Bioinformatics
  
  Volume: 28 Issue: 5 Pages: 745-746
- DOI
  10.1093/bioinformatics/bts031
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-221S0002
[Journal Article] Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population2012
- Author(s)
  Nakamura M
- Journal Title
  
  Am J Hum Genet.
  
  Volume: 91 Issue: 4 Pages: 721
- DOI
  10.1016/j.ajhg.2012.08.010
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22590344, KAKENHI-PROJECT-22590725, KAKENHI-PROJECT-22590748, KAKENHI-PROJECT-23591014, KAKENHI-PROJECT-23790781, KAKENHI-PROJECT-24390187, KAKENHI-PROJECT-24591867, KAKENHI-PROJECT-24790728, KAKENHI-PLANNED-22133008, KAKENHI-PROJECT-221S0002
[Journal Article] An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds2012
- Author(s)
  Nakamura, M., Hachiya, T., Saito, Y., Sato, K., and Sakakibara, Y.
- Journal Title
  
  BMC Bioinformatics
  
  Volume: 13 Issue: S17
- DOI
  10.1186/1471-2105-13-s17-s8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23241066, KAKENHI-PROJECT-221S0002
[Journal Article] A large scale analysis of protein-protein interactions in the nitrogenfixing bacterium Mesorhizobium loti2008
- Author(s)
  Shimoda, Y., Shinpo, S., Kohara, M., Nakamura, Y., Tabata, S., Sato, S.
- Journal Title
  
  DNA Res. 15(1)
  
  Pages: 13-23
- Data Source
  KAKENHI-PROJECT-17018041
[Journal Article] The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotusjaponicus root nodules2005
- Author(s)
  Krusell, L., Krause, K., Ott, T., Desbrosses, G., Kraemer, U., Sato, S., Nakamura, Y., Tabata, S., James, E.K., Sandal, N et al.
- Journal Title
  
  Plant Cell 17
  
  Pages: 1625-1636
- Data Source
  KAKENHI-PROJECT-17018041
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2024
- Author(s)
  桑田晃、伴広輝、中村洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
- Organizer
  日本藻類学会第48回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 国内流行型G群レンサ球菌Streptococcus dysgalactiaeが有する遺伝子発現機構2024
- Author(s)
  木ノ嶋航司、小倉康平、北村仁美、彼谷裕康、中村雅俊、岡本成史
- Organizer
  第35回日本臨床微生物学会総会・学術集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン2024
- Author(s)
  望月孝子、坂本美佳、谷澤靖洋、中山卓郎、谷藤吾朗、神川龍馬、中村保一
- Organizer
  日本育種学会第145回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Nicotiana benthamianaゲノムとトランスクリプトームの包括的解析プラットフォームの構築2024
- Author(s)
  黒谷賢一、平川秀樹、白澤健太、田桐昂也、森萌恵、市橋泰範、鈴木孝征、谷澤靖洋、中村保一、磯部祥子、野田口理孝
- Organizer
  日本植物生理学会
- Data Source
  KAKENHI-PROJECT-22K06181
[Presentation] 国内流行型β溶血性レンサ球菌Streptococcus dysgalactiae の生化学的・遺伝子的特徴2023
- Author(s)
  木ノ嶋航司、小倉康平、北村仁美、彼谷裕康、中村雅俊、岡本成史
- Organizer
  第60回日本細菌学会中部支部総会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Estrogen Receptor Transcriptional Activity Induced By A Putative Estrogen-Responsive Region Near The Enkephalin Gene2023
- Author(s)
  中村圭太、白根共太、石橋知佳、松島綾美
- Organizer
  第60回ペプチド討論会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Marpolbase: ゼニゴケのための遺伝子情報および発現量データベースの開発2023
- Author(s)
  谷澤靖洋、川村省吾、Romani Facundo、矢倉勝、望月孝子、坂本美佳、山岡尚平、西浜竜一、中村保一、大和勝幸、Bowman John、河内孝之
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 新規遺伝子アノテーションで明らかになるスエヒロタケ複数株におけるゲノム構成の違い2023
- Author(s)
  坂本美佳、松前ひろみ、小木曽映里、望月孝子、谷澤靖洋、クリュコフ・キリル、今西規、豊田敦、亀井克彦、細矢剛、中村保一
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Advancements in Nucleotide Sequencing and Genome Analysis2023
- Author(s)
  Yasukazu Nakamura
- Organizer
  The 8th Big Data Forum for Life and Health Sciences
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2023
- Author(s)
  桑田晃、伴広輝、中村洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
- Organizer
  日本海洋学会2023年度秋季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 新規遺伝子アノテーションで明らかになるスエヒロタケ複数株におけるゲノム構成の違い2023
- Author(s)
  坂本美佳松前ひろみ小木曽映里望月孝子谷澤靖洋 KRYUKOV Kirill 今西規豊田敦亀井克彦細矢剛中村保一
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023
- Author(s)
  Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
- Organizer
  15th International Symposium on Pre-Harvest Sprouting in Cereals
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン2023
- Author(s)
  望月孝子、坂本美佳、谷澤靖洋、中山卓郎、谷藤吾朗、神川龍馬、中村保一
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 非モデル生物のシークエンス解析・インフォマティクス解析2023
- Author(s)
  中村保一
- Organizer
  日本植物学会
- Data Source
  KAKENHI-PROJECT-22K06181
[Presentation] 生物間相互作用のモデル植物であるNicotiana benthamianaのゲノム解読2023
- Author(s)
  黒谷賢一、平川秀樹、白澤健太、谷澤靖洋、中村保一、磯部祥子、野田口理孝
- Organizer
  日本植物学会
- Data Source
  KAKENHI-PROJECT-22K06181
[Presentation] モモ 25 品種の比較ゲノム解析2023
- Author(s)
  衣川達己、谷澤靖洋、中村保一、伊藤武彦、田中裕之、平川英樹、篠澤章久、馬場正、小田賢司、井出大輔、大和勝幸、石丸恵
- Organizer
  令和５年園芸学会春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] キムラグモのゲノム・クモ糸候補遺伝子からみるクモの大系統解析2023
- Author(s)
  石渡智里、山本フィリップ、中村浩之、谷川明男、河野暢明
- Organizer
  日本動物学会第94回山形大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 非モデル寄生蜂を用いたマルチオミクス解析および寄生関連遺伝子の同定2023
- Author(s)
  Kamiyama、Takumi、Shimada、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Identification of novel venom proteins required for Drosophila epithelial cell death by the parasitoid wasp Asobara japonica2023
- Author(s)
  Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  The 27th European Drosophila Research Conference(EDRC 2023)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023
- Author(s)
  Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
- Organizer
  The 15th International Symposium on Pre-Harvest Sprouting in Cereals
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] High quality reference genome sequences of liverwort Toward completion of the Marchantia Genome Project2023
- Author(s)
  Yasuhiro Tanizawa、Shogo Kawamura、Takako Mochizuki、Mika Sakamoto、Shohei Yamaoka、Ryuichi Nishihama、Facundo Romani、John L. Bowman、Frederic Berger、Takayuki Kohchi、Yasukazu Nakamura
- Organizer
  Taiwan-Japan Plant Biology 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ツノケイソウの赤色光培養で蓄積する集光性色素タンパク質FCPの同定と機能解析2023
- Author(s)
  中村翠、熊沢穣、長尾遼、石川規子、沈建仁、伊福健太郎
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Novel venom proteins of the parasitoid wasp Asobara japonica play an essential role in Drosophila epithelial cell death2023
- Author(s)
  Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
- Organizer
  The 6th Asian-Pacific Drosophila Research Conference (APDRC)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 内部寄生蜂ニホンアソバラコマユバチの飼い殺し型寄生を司る毒遺伝子の探索2022
- Author(s)
  上山拓己、森一葉、谷直紀、中村輝、島田-丹羽裕子、丹羽隆介
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 下気道におけるM細胞の分化機構の解明2022
- Author(s)
  木村俊介, 山田恭央, 中村有孝, 河合真悟, 長谷耕二
- Organizer
  第6回日本骨免疫学会ウィンタースクール
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 次世代シークエンサ―解析による古人骨DNA残存量と環境および分子因子の相関関係の研究2022
- Author(s)
  中村友香、和久大介、脇山由基、渡辺裕介、小金渕佳江、長岡朋人、平田和明、大橋順、米田穣、高橋龍三郎、太田博樹
- Organizer
  第76回日本人類学会大会・第38回日本霊長類学会大会連合大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 集団遺伝学のモデル菌類としてのスエヒロタケのゲノム解析2022
- Author(s)
  松前ひろみ、坂本美佳、小木曽映里、須藤恵美、クリュコフキリル、望月孝子、谷澤靖洋、今西規、今西規、豊田敦、中村保一、亀井克彦、細矢剛
- Organizer
  日本進化学会第24回沼津大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 古人骨ゲノム解析から見た千葉県縄文後晩期の婚姻システム2022
- Author(s)
  脇山由基、和久大介、中村友香、小金渕佳江、渡辺裕介、大橋順、米田穣、藤田尚、長岡朋人、平田和明、高橋龍三郎、太田博樹
- Organizer
  第76回日本人類学会大会・第38回日本霊長類学会大会連合大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 卵を食べるシクリッドの系統的起源2022
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 生物間相互作用のモデル植物Nicotiana benthamianaの詳細ゲノム解析2022
- Author(s)
  黒谷賢一, 平川秀樹, 白澤健太, 谷澤靖洋, 中村保一, 磯部祥子, 野田口理孝
- Organizer
  第64回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-22K06181
[Presentation] Venom action on host and non-host Drosophila for the parasitism by the parasitoid wasp Asobara japonica2022
- Author(s)
  Takumi Kamiyama、Hitoha Mori、Naoki Tani、Akira Nakamura、Yuko Shimada-Niwa、Ryusuke Niwa
- Organizer
  15th Japan Drosophila Research Conference
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 肥厚した唇を持つヴィクトリア湖シクリッドの進化史推定2022
- Author(s)
  中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 放線菌のカルコフォア合成様遺伝子群の発現制御を担うシグマ因子SigCの解析2022
- Author(s)
  藤本正浩、Salvatore Cosentino、按田瑞恵、佐藤光彦、中村佳司、小椋義俊、林哲也、岩崎渉、上田賢志、髙野英晃
- Organizer
  2022年度（第36回）日本放線菌学会大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ゲノム進化のモデル生物と疾患の解明を目指すスエヒロタケの全ゲノム解析2022
- Author(s)
  松前ひろみ、坂本美佳、小木曽映里、須藤恵美、クリュコフキリル、望月孝子、谷澤靖洋、今西規、豊田敦、中村保一、亀井克彦、細矢剛
- Organizer
  日本菌学会第66回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 微生物統合データベースMicrobeDB. jpを用いたマイクロバイオーム研究への応用2022
- Author(s)
  森宙史, 藤澤貴智, 西出浩世, 矢口貴志, 高橋弘喜, 中川善一, 山田拓司, 内山郁夫, 中村保一, 黒川顕
- Organizer
  第16回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Repeated translocation of a supergene underlying rapid sex chromosome turnover(転移型の性決定領域が性染色体の急速な置換をもたらす)2022
- Author(s)
  Ahammad Kabir, Risa Ieda, Sho Hosoya, Daigaku Fujikawa, Kazufumi Atsumi, Shota Tajima, Aoi Nozawa, Takashi Koyama, Shotaro Hirase, Osamu Nakamura, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku, Yasukazu Nakamura, Hisato Kobayashi, Atsushi Toyoda, Satoshi Tasumi, Kiyoshi Kikuchi
- Organizer
  令和4年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] フタホシコオロギ Gryllus bimaculatus の神経ペプチドと受容体の包括的アノテーションの事例紹介2022
- Author(s)
  望月孝子、坂本美佳、谷澤靖洋、清家瞳、祝貞、Yijun Zhou、永田晋治、中村保一
- Organizer
  第45回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 染色体レベルゲノムアセンブルとそのDB2021
- Author(s)
  中村保一
- Organizer
  第4回植物インフォマティクス研究会・年会(2021)
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ユーストマの全ゲノム解読とDNAマーカー開発2021
- Author(s)
  川勝恭子, 豊田敦, 永野惇, 川勝泰二, 中野善公, 今村仁, 福田直子, 久松完, 山口博康, 望月孝子, 谷澤靖洋, 坂本美佳, 中村保一
- Organizer
  日本育種学会第139回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 卵泥棒の起源からシクリッドの適応放散を探る2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  第23回日本進化学会年大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 菌血症における病原菌の患者内多様性の解明に向けた解析パイプラインの構築2021
- Author(s)
  園田大輝, 後藤恭宏, 西田留梨子, 下野信行, 中村佳司, 林哲也
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] The genome biology of Parmales (Bolidophyceae), a sister group of diatomsThe genome biology of Parmales (Bolidophyceae), a sister group of diatoms.2021
- Author(s)
  伴広輝, 佐藤晋也, 吉川伸哉, 山田和正, 中村洋路, 一宮睦雄, 遠藤寿, Romain Blanc-Mathieu, 桑田晃, 緒方博之
- Organizer
  Molecular life of diatoms 6
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シリカ被殻を持つ真核藻類 : パルマ藻・珪藻の比較ゲノム解析2021
- Author(s)
  伴広輝、桑田晃、中村洋路、佐藤晋也、吉川伸哉、山田和正、一宮睦雄、緒方博之
- Organizer
  日本藻類学会第45回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] バイオエコノミーに資する染色体レベルゲノム情報の提供2021
- Author(s)
  中村保一
- Organizer
  第38回日本植物バイオテクノロジー学会(つくば)大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : development of the genome and expression database for the liverwort Marchantia polymorphaMarpolbase : ゼニゴケのための遺伝子情報および発現量データベースの開発2021
- Author(s)
  谷澤靖洋, 川村昇吾, 矢倉勝, 坂本美佳, 望月孝子, 山岡尚平, 西浜竜一, 大和勝幸, 河内孝之, Liu, Chang, Berger, Frédéric, 中村保一
- Organizer
  第62回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 全ゲノムから迫るビクトリア湖産シクリッドHaplochromis sp. “matumbi hunter”の集団史2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本遺伝学会第93回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Evolutionary history of egg hunting cichlids in Lake Victoria2021
- Author(s)
  Imamoto, M., Nakamura, H., Aibara, M., Ito, Takehiko. and Nikaido, M.
- Organizer
  The 2nd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 宿主ショウジョウバエの発生を操作する内部寄生蜂Asobara japoniraの毒の同定を目指して2021
- Author(s)
  島田裕子, 上山拓己, 森一葉, 藤井美月, 清家和樹, 片山南美, 竹股ひとみ, 谷直紀, 中村輝, 田中裕之, 豊田敦, 伊藤武彦, 丹羽隆介
- Organizer
  第67回トキシンシンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物統合データベース MicrobeDB. jp version 3とマイクロバイオーム解析2021
- Author(s)
  森宙史、藤澤貴智、西出浩世、矢口貴志、高橋弘喜、中川善一、山田拓司、内山郁夫、中村保一、黒川顕
- Organizer
  第15回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 黄色ブドウ球菌はAgrのサイレンシングにより院内感染でのパーシステンスとコンピテンシーを獲得する2021
- Author(s)
  山崎由里子, 田中麻里, 楠屋陽子, 青山礼華, 大曽根義輝, 高橋弘喜, 中村悠美, 高屋明子
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ユーストマの全ゲノム解読とDNAマーカー開発(学会のプレスリリース課題に選定されたとのことhttps://www.nacos.com/jsb/06/06press.html)2021
- Author(s)
  川勝恭子、豊田敦、永野惇、川勝泰二、中野善公、今村仁、福田直子、久松完、山口博康、望月孝子、谷澤靖洋、坂本美佳、中村保一
- Organizer
  日本育種学会第139回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] A hijack strategy of an endoparasitoid wasp on Drosophila larvae : Toward the Identification of venom components in Asobara japonica2021
- Author(s)
  Shimada, Yuko, Kamiyama, Takumi, Tani, Naoki, Mori, Hitoha, Katayama, Minami, Takemata, Hitomi, Fujii, Mitsuki, Kuwabara, Takayoshi, Seike, Kazuki, Nakamura, Akira, Niwa, Ryusuke
- Organizer
  第14回日本ショウジョウバエ研究集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 様々なヘテロ接合度の生物を用いたハプロイドセット構築のためのゲノムアセンブリ手法の評価2021
- Author(s)
  望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第44回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Complete genomes of plants for smart agriculture.2021
- Author(s)
  中村保一
- Organizer
  International Congress on Emerging Fields and Exploratory Research in Optics and Photonics 2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッドHaplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類 : パルマ藻のゲノム解析2020
- Author(s)
  桑田晃、中村洋路、斉藤憲治、伴広輝、緒方博之、佐藤晋也、吉川伸哉、一宮睦雄
- Organizer
  日本藻類学会第44回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 染色体レベルのゼニゴケ参照ゲノムの構築とゲノムデータベースの開発2020
- Author(s)
  谷澤靖洋, 矢倉勝, 坂本美佳, 望月孝子, Montgomery, Sean A., Galik, Bence, 山岡尚平, 西浜竜一, 大和勝幸, 河内孝之, Berger, Frédéric, Liu, Chang, 中村保一
- Organizer
  第61回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 放線菌Streptomyces avermitilisのカルコフォア生産制御機構の解析2020
- Author(s)
  萩谷祥、Salvatore Cosentino、按田瑞恵、後藤恭宏、中村佳司、林哲也、岩崎渉、上田賢志、髙野英晃
- Organizer
  日本農芸化学会2020年度大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明2020
- Author(s)
  中村遥奈、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本遺伝学会第92回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Identification of Cell-Free DNA profile in oligometastatic colorectal cancer2020
- Author(s)
  Masaki Nakamura
- Organizer
  ESTRO 2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明2020
- Author(s)
  中村遥奈、畑島諒、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromosome-level assembly of liverwort Marchantia polymorpha and updates of the genome database MarpolBase.2020
- Author(s)
  Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Freédéric Berger
- Organizer
  Plant and Animal Genomics 2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genetic factor which aggravates hyperuricemia into gout was identified by genome-wide association study2019
- Author(s)
  Yusuke Kawamura, Hirofumi Nakaoka, Akiyoshi Nakayama, Yukinori Okada, Ken Yamamoto, Hiroshi Ooyama, Shimizu Seiko, Mayuko Nakajima, Takahiro Nakamura, Masahiro Nakatochi, Mitsuhiro Yokota, TakadaTappei, Kamatani Yoichiro, Takahashi Atushi, Kenji Wakai, Michiaki Kubo, Kimiyoshi Ichida, Inoue Ituro, Nariyoshi Shinomiya, Hirotaka Matsuo
- Organizer
  日本人類遺伝学会第64回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケゲノムのアップデートにまつわるetc.2019
- Author(s)
  谷澤靖洋, 矢倉勝, 望月孝子, 坂本美佳, 山岡尚平, 西浜竜一, Sean A. Montgomery, Chang Liu, Bence Galik, Frederic Berger, 大和勝幸, 河内孝之, 中村保一
- Organizer
  第2回植物インフォマティクス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケMarchantiapolymorphaと珪藻Nitzschiasp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子、谷沢靖洋、中村保一, 他
- Organizer
  第60回植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構の解析2019
- Author(s)
  長束千尋, Salvatore Cosentino, 按田瑞恵, 角悟, 後藤恭宏, 中村佳司, 林哲也, 岩崎渉, 上田賢志, 髙野英晃
- Organizer
  2019年度(第34回)日本放線菌学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] DFAST : Prokaryotic Genome Annotation Pipeline for Faster Data Submission to Public Sequence Database2019
- Author(s)
  Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, and Yasukazu Nakamura
- Organizer
  ASM Microbe 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Update of MarpolBase to accommodate ver. 5.1 gene annotation.2019
- Author(s)
  Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Frédéric Berger
- Organizer
  Marchantia Workshop 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2019
- Author(s)
  Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Harry M. Cullings, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Organizer
  The 16th International Congress of Radiation Research 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Intracellular evolution through loss of photosynthesis and adaptation to a heterotrophic lifestyle revealed by the genome analysis of a non-photosynthetic diatom2019
- Author(s)
  Ryoma Kamikawa, Takuro Nakayama, Daniel Moog, Takayuki Fujiwara, Ryo Onuma, Shin-ya Miyagishima, Keitaro Kume, Ugo Cenci, Bernard Henrissat, Kaori Oyama, Misako Kato, Hideaki Miyashita, Goro Tanifuji, Yasuhiro Tanizawa, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura
- Organizer
  14th International Colloquium on Endocytobiology and Symbiosis, Lille, France
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Mutation spectrum in the genome of offspring derived from irradiated mouse spermatogonia and mature oocytes2019
- Author(s)
  Yasunari Satoh, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Organizer
  日本放射線影響学会第62回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケ・高密度な実験情報の集約によるモデル植物化の加速2019
- Author(s)
  中村保一
- Organizer
  「データ駆動型植物科学最前線」第37回日本植物細胞分子生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2019
- Author(s)
  谷沢靖洋、藤澤貴智、有田正規、中村保一
- Organizer
  第13回ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromosome-scale assemblies are coming back.2019
- Author(s)
  Yasukazu Nakamura
- Organizer
  The Asian Bioinformatics Consortium (ABC) Symposium
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケMarchantia polymorphaと珪藻Nitzschia sp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子, 谷澤靖洋, 山岡尚平, 西浜竜一, 金澤建彦, 上田貴志, 大和勝幸, 河内孝之, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第60回日本植物生理学会年会(名古屋)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 放線菌Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構2019
- Author(s)
  長束千尋, Salvatore Cosentino, 按田瑞恵, 角悟, 後藤恭宏, 中村佳司, 林哲也, 岩崎渉, 上田賢志, 髙野英晃
- Organizer
  第18回微生物研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで2019
- Author(s)
  坂本美佳, 望月孝子, 谷澤靖洋, 矢倉勝, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第2回植物インフォマティクス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Database for the Chromosome-Level Assembly for a Liverwort Marchantia polymorpha2019
- Author(s)
  Nakamura, Y., Tanizawa, Y., Mochizuki, T., et al.
- Organizer
  Plant and Animal Genomics 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] We are ready to 10 k microbe genomes.2019
- Author(s)
  Yasukazu Nakamura
- Organizer
  A high-level CODATA data policy meeting, Beijing
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 精原細胞期と成熟卵母細胞期のマウス生殖細胞への放射線照射は子どものゲノムに小さなサイズの欠失とマルチサイト変異を誘発する2018
- Author(s)
  佐藤康成、Kuo Tony、瀬々潤、西村まゆみ、島田義也、中村典、内村有邦
- Organizer
  日本放射線影響学会第61回大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第12回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケ・珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで2018
- Author(s)
  望月孝子、谷沢靖洋、中村保一
- Organizer
  第1回植物インフォマティックス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 網羅的遺伝子構造予測自動アノテーションパイプラインの開発2018
- Author(s)
  篠田恭寛, 梶谷嶺, 小林史弥, 高橋和希, 中村優太, 湯淺英知, 伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Both common and rare genetic variants of ABCG2 are risks for gout2018
- Author(s)
  Higashino T, Takada T, Nakaoka H, Toyoda Y, Stiburkova B, Miyata H, Ikebuchi Y, Nakashima H, Shimizu S, Kawaguchi M, Sakiyama M, Nakayama A, Akashi A, Tanahashi Y, Kawamura Y, Nakamura T, Wakai K, Okada R, Yamamoto K, Hosomichi K, Hosoya T, Ichida K, Ooyama H, Suzuki H, Inoue I, Merriman TR, Shinomiya N, Matsuo H.
- Organizer
  European Human Genetics Conference 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2018
- Author(s)
  谷沢靖洋、藤澤貴智、中村保一
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T, Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Hideki Nagasaki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  Plant and Animal Genome XXVI
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Development of Marchantia Gene Nomenclature Database2018
- Author(s)
  Yasuhiro Tanizawa, Takako Mochizuki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] THE COMPLETE GENOME OF A NON-PHOTOSYNTHETIC DIATOM AND ITS PLASTIDAL SULFOLIPID BIOSYNTHESIS2018
- Author(s)
  Kamikawa R, Oyama K, Tanizawa Y, Mochizuki T, Nakayama T, Tanifuji, G, Nakamura Y, Kato M, Miyashita H
- Organizer
  ISOP/PSA
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第91回日本細菌学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : ゼニゴケゲノムデータベースの構築2018
- Author(s)
  望月孝子、谷澤靖洋、長崎英樹、山岡尚平、西浜竜一、金澤建彦、上田貴志、大和勝幸、河内孝之、中村保一
- Organizer
  第59回日本植物生理学会年会(札幌)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Towards Better Genome Annotation.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Symposium on "Genome Evolution at Mishima"(GEM)
- Place of Presentation
  三島
- Year and Date
  2017-03-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Biology of a picoeukaryotic phytoplankton, Parmales(Bolidophyceae), a sister group of diatoms2017
- Author(s)
  桑田晃, 一宮睦雄, 吉川伸哉, 山田和正, 河地正伸, Mary-Hélène Noël, 斉藤憲治, 中村洋路, 沢田健, Adriana Lopes dos Santos, Daniel Vaulot
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Morphological and transcriptome analysis in cell wall formation of Triparma laevis2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST : Toward faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, M Arita, Y Nakamura
- Organizer
  NIG International Symposium 2017 Commemorationg the 30th Anniversary of DDBJ. Life, Environment, and Evolution Revealed by Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Organizer
  The 28th International Conference on Genome Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Genome Database for Marchantia polymorpha2017
- Author(s)
  Y Tanizawa, T Mochizuki, Y Nakamura
- Organizer
  The 65th NIBB Conference : Renaissance of Marchantia polymorpha
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] パルマ藻Triparma Iaevisの細胞壁形成機構の解析2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 一柳紀凛, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-wide association study of clinically defined gout and subtypes identifies multiple susceptibility loci including transporter genes.2017
- Author(s)
  Hirotaka Matsuo, Nakayama Akiyoshi, Hirofumi Nakaoka, Ken Yamamoto, Masayuki Sakiyama, Amara Shaukat, Yu Toyoda, Yukinori Okada, Yoichiro Kamatani, Masahiro Nakatochi, Takahiro Nakamura, Tappei Takada, Katsuhisa Inoue, Hiroshi Nakashima, Seiko Shimizu, Kawaguchi Makoto, Asahi Hishida, Kenji Wakai, Blanka Stiburkova, Lisa K. Stamp, Nicola Dalbeth, Tatsuo Hosoya, Ituro Inoue, Atsushi Takahashi, Michiaki Kubo, Hiroshi Ooyama, Toru Shimizu, Kimiyoshi Ichida, Tony R. Merriman, Nariyoshi Shinomiya
- Organizer
  67th Annual Meeting of the American Society of Human Genetics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キットNextera XTによるシーケンスバイアスと細菌のGC含量の関係2017
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  NGS現場の会第5回研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST-Toward faster genome publication.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Advanced Genome Science International Symposium “The Start of New Genomics”
- Place of Presentation
  東京
- Year and Date
  2017-01-10
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 「Gef-seqに対応したマッピングプログラムおよびGUIの開発」2015
- Author(s)
  松本秀太・中村建介
- Organizer
  第９回　日本ゲノム微生物学会年会
- Place of Presentation
  神戸大学
- Year and Date
  2015-03-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] R-Spondin1 promotes Paneth cell growth, maintains intestinal microbial ecology, and ameliorates graft-versus-host disease2015
- Author(s)
  Hayase E, Hashimoto D, Nakamura K, Ogura Y, Hayashi T, Kurokawa K, Ayabe T, and Teshima T.
- Organizer
  57th ASH Annual Meeting
- Place of Presentation
  Orlando, FL, USA
- Year and Date
  2015-12-06
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated by the Research Communities (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  International Plant & Animal Genome XXII
- Place of Presentation
  サンディエゴ、米国
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2014
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第55回日本植物生理学会年会
- Place of Presentation
  富山大学
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Our Informatics Approaches for Marchantia Genome2013
- Author(s)
  Nagasaki H, Iida N, Nakamura Y.
- Organizer
  Marchantia IV
- Place of Presentation
  メルボルン、オーストラリア
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database: ゼニゴケゲノム解析とゲノムアノテーションデータベースの構築 (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  第36回日本分子生物学会年会
- Place of Presentation
  神戸ポートアイランド
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Liverwort Genome Analysis and Construction of the Genome Annotation Database (ポスター)2013
- Author(s)
  Nagasaki H, Ishizaki K, Yamato K T, Kohchi T, Nakamura Y.
- Organizer
  JSBi2013
- Place of Presentation
  タワーホール船堀(東京)
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] NGS由来大量データレポジトリDRAと解析支援パイプラインの提供2012
- Author(s)
  中村保一
- Organizer
  理研シンポジウム・データ駆動型生命情報科学の挑戦
- Place of Presentation
  仙台
- Year and Date
  2012-05-09
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列のクラウド型パイプライン2011
- Author(s)
  長崎英樹, 望月孝子, 神沼英里, 渡邊成樹, 児玉悠一, 猿橋智, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  第52回日本植物生理学会年会
- Place of Presentation
  東北大学(宮城県仙台市)
- Year and Date
  2011-03-20
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 日本DNAデータバンク(DDBJ)での新規電算機システムによる超並列型シーケンサ由来の大規模塩基配列情報解析支援の試み2011
- Author(s)
  望月孝子, 児玉悠一, 猿橋智, 長崎英樹, 神沼英里, 菅原秀明, 大久保公策, 高木利久, 中村保一
- Organizer
  「生命情報科学若手の会」第2回研究会
- Place of Presentation
  国立遺伝学研究所(静岡県三島市)
- Year and Date
  2011-10-09
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] イルミナシーケンサーの配列特異的エラーについて2011
- Author(s)
  中村建介
- Organizer
  日本進化学会第13回大会
- Place of Presentation
  京都大学
- Year and Date
  2011-07-31
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサーのアーカイブDBとクラウド型データ解析システムの紹介2011
- Author(s)
  神沼英里、児玉悠一、猿橋智、望月孝子、長崎英樹、高木利久、大久保公策、中村保一
- Organizer
  第154回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-08-19
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列のクラウド型解析パイプラインDDBJ Pipeline進捗:de novoアセンブル配列注釈ワークフロー2011
- Author(s)
  長崎英樹、望月孝子、児玉悠一、猿橋智、高木利久、大久保公策、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based annotation tool for next-generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Kodama, Y., Saruhashi, S., Takagi, T., Okubo, K., Kaminuma, E., Nakamura, Y.
- Organizer
  The 2nd International Conference on the Progress of "1000 Plant & Animal Reference Genomes Project"
- Place of Presentation
  Shenzhen, China
- Year and Date
  2011-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  Functional Genomics and Systems Biology 2011 Wellcome Trust Scientific Conferences
- Place of Presentation
  Hinxton, Cambridge, UK
- Year and Date
  2011-11-30
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 新型シーケンサ・アーカイブ配列からのDNA多型注釈データベース構築系統識別ワークフローの開発2011
- Author(s)
  猿橋智、長崎英樹、望月孝子、神沼英里、中村保一
- Organizer
  第34回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜(神奈川県横浜市)
- Year and Date
  2011-12-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Archive and a cloud-computing based analytical pipeline for next-generation sequencing reads2011
- Author(s)
  Satoshi Saruhashi, Takako Mochizuki, Hideki Nagasaki, Yuichi Kodama, Asami Nozaki, Kyung-Bum Lee, Toshihisa Okido, Emi Yokoyama, Eli Kaminuma, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  8th Solanaceae and 2nd Cucurbitaceae Joint Conference
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2011-11-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] Sequence specific error profile of Illumina sequencers2011
- Author(s)
  Kensuke Nakamura
- Organizer
  SMBE2011 (Society of Molecular Biology and Evolution)
- Place of Presentation
  京都大学
- Year and Date
  2011-07-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud based pipeline for high-throughput analysis of next generation sequencing data2011
- Author(s)
  Nagasaki, H., Mochizuki, T., Watanabe S., Morizaki, S., Kodama Y., Saruhashi, S., Takagi T., Okubo K., Kaminuma E., Nakamura, Y.
- Organizer
  Plant and Animal Genome XIX Conference
- Place of Presentation
  San Diego, USA
- Year and Date
  2011-01-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウト型解析パイプライン2011
- Author(s)
  猿橋智, 児玉悠一, 李慶範, 大城戸利久, 横山会美, 長崎英樹, 望月孝子, 神沼英里, 菅原秀明, 高木利久, 大久保公策, 中村保一
- Organizer
  NGS現場の会第1回研究会
- Place of Presentation
  熱海ニューフジヤホテル(静岡県熱海市)
- Year and Date
  2011-05-28
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  第148回農林交流センターワークショップ「次世代シーケンサーを利用したゲノム解析の実際」
- Place of Presentation
  農林水産先端技術研究所(茨城県つくば市)
- Year and Date
  2010-09-10
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A web-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2010)
- Place of Presentation
  Boston, USA
- Year and Date
  2010-07-11
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline : A cloud computing based analytical tool for next-generation sequencing data2010
- Author(s)
  Yasukazu Nakamura, Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideki Nagasaki, Hideaki Sugawara, Toshihisa Takagi, Kousaku Okubo
- Organizer
  Rice Annotation Project RAP7 meeting
- Place of Presentation
  東京国際交流館(東京都江東区)
- Year and Date
  2010-10-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] 次世代シーケンサのアーカイブDBとクラウド型解析パイプライン2010
- Author(s)
  神沼英里、望月孝子、児玉悠一、猿橋智、菅原秀明、大久保公策、高木利久、中村保一
- Organizer
  NIASシンポジウム「イネ遺伝学・分子生物学ワークショップ2010」
- Place of Presentation
  つくば国際会議場(茨城県つくば市)
- Year and Date
  2010-07-02
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Sequence Read Annotation Pipeline-A cloud computing-based analytical tool for next-generation sequencing data2010
- Author(s)
  Eli Kaminuma, Takako Mochizuki, Yuichi Kodama, Satoshi Saruhashi, Hideaki Sugawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura
- Organizer
  The tenth Cold Spring Harbor Laboratory/Wellcome Trust conference on Genome Informatics
- Place of Presentation
  Hinxton, UK
- Year and Date
  2010-09-15
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] DDBJ Read Annotation Pipeline:新型シーケンサ由来配列データ解析パイプライン2010
- Author(s)
  長崎英樹、望月孝子、神沼英里、渡邊成樹、児玉悠一、猿橋智、菅原秀明、高木利久、大久保公策、中村保一
- Organizer
  第33回日本分子生物学会年会
- Place of Presentation
  神戸国際会議場(兵庫県神戸市)
- Year and Date
  2010-12-07
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for the Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki, Naoko Iida, Yasukazu Nakamura
- Organizer
  Marchantia Workshop 2014
- Place of Presentation
  神戸大学
- Year and Date
  2014-12-08 – 2014-12-10
- Invited
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第56回日本植物生理学会年会
- Place of Presentation
  東京農業大学
- Year and Date
  2015-03-16 – 2015-03-18
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Hideki Nagasaki Kimitsune Ishizaki Katsuyuki T. Yamato Takayuki Kohchi Yasukazu Nakamura
- Organizer
  International Plant & Animal Genome XXIII
- Place of Presentation
  San Diego, CA, USA
- Year and Date
  2015-01-10 – 2015-01-14
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort ゼニゴケゲノムアノテーションデータベースの構築
- Author(s)
  長崎英樹、石崎公庸、大和勝幸、河内孝之、中村保一
- Organizer
  第37回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2014-11-25 – 2014-11-27
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] The Construction of Genome Annotation Database for Liverwort Marchantia polymorpha
- Author(s)
  Yasukazu Nakamura, Hideki Nagasaki, Naoko Iida
- Organizer
  Expanding Frontiers of Genome Science II
- Place of Presentation
  一橋講堂
- Year and Date
  2015-01-20 – 2015-01-21
- Data Source
  KAKENHI-PROJECT-221S0002
[Presentation] ミヤコグサ根粒菌STM変異株の共生に関する表現型とタンパク質間相互作用情報を基にした新規共生関連遺伝子の機能類推
- Author(s)
  中務弘基、下田宣司、中村保一、田畑哲之、佐藤修正
- Organizer
  第32回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-17018041

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156. 中尾光善

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# of Collaborated Products: 1 results
157. 板東哲哉

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# of Collaborated Products: 1 results
158. 小山喬

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# of Collaborated Products: 1 results
159. 北川元生

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160. 増田渉

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# of Collaborated Products: 1 results
161. 澤進一郎

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Nakamura Yasukazu 中村 保一

NAKAMURA Yasukazu 中村 保一

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Comprehensive analysis of characteristic sequence patterns among protein-coding regionsPrincipal Investigator

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[Book] Methods in Molecular Biology, Gene Prediction2019

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[Book] Gene Prediction Methods and Protocols2019

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[Book] 次世代シークエンサーDRY解析教本 改訂第2版2019

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[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊 もっとよくわかる! シリーズ)2019

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[Journal Article] Neonatal skin dysbiosis to infantile atopic dermatitis: Mitigating effects of skin care2024

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[Journal Article] Model systems for discovering evolutionary singularity of bilaterian physiological regulation: lessons from studies on simple/primitive flatworms2024

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Nakamura Yasukazu 中村保一

NAKAMURA Yasukazu 中村保一

[Book] 次世代シークエンサーDRY解析教本改訂第2版2019

[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019