Kitao Akio 北尾彰朗

… Alternative Names

Researcher Number	30252422
Other IDs
External Links
Affiliation (Current)	2019: 東京工業大学, 生命理工学院, 教授
Affiliation (based on the past Project Information) *help	2017 – 2019: 東京工業大学, 生命理工学院, 教授 2007 – 2017: The University of Tokyo, 分子細胞生物学研究所, 准教授 2009: The University of Tokyo, 分子細胞生物研究所, 准教授 2003 – 2006: 東京大学, 分子細胞生物学研究所, 助教授 2003 – 2004: 東京大学, 分子細胞生物研究所, 助教授 … More
Review Section/Research Field	Principal Investigator Science and Engineering / Biophysics / Biological Sciences / Biophysics / 物性一般(含基礎論) / Bioinformatics/Life informatics / Basic Section 43040:Biophysics-related Except Principal Investigator Biological Sciences / Science and Engineering / Biophysics / Constructive Systems Biology
Keywords	Principal Investigator タンパク質 / CD2 / ダイナミクス / 分子動力学 / 階層性 / 蛋白質 / エネルギー地形 / シミュレーション / 機能 / 構造変化 … More Except Principal Investigator 蛋白質 / 生物物理 / 理論・計算 / 先端計測 / 機能創成 / 分子科学 / 立体構造 / 機能 / X線結晶構造解析 / 分子シミュレーション / 中性子散乱 / 結晶構造解析 / 分子複雑系 / 複雑分子系 / 安定性 / 構造予測 / ダイナミックス / タンパク質 / タンパク質立体構造 / 生体超分子 / 構造 / 電子線構造解析 / 電子顕微鏡 / 構造機能理論計算 / X 線結晶構造解析 / 溶媒効果 / 立体構造変化 / ABC蛋白質 / 立体構造ダイナミクス / エネルギー地形 / X線散漫散乱 / 計算機シミュレーション / 実験データ解析 / 蛋白質分子の協奏的揺らぎ / 分子動力学計算 / 基準振動解析 / 温度因子 / おれたたみ / デザイン / 構築原理 / 出版 / 公開講演会 / 進化 / 折れたたみ / 比較・分類 / 比較分類 / Protein / Three-dimensional structure / Folding / Stability / Structural prediction / Design / Dynamics / Principle of architecture / タンパク質の安定性 / タンパク質のダイナミックス / タンパク質の折れたたみ機構 / リゾチーム / カロリメトリー / X線結晶解析 / 折れたたみ機構 / 熱測定 / Protein Conformation / Stability of Protein / Dynamics of Protein / Protein Folding / Lysozyme / Calorimetry / X-ray crystal analyses / 非線形振動 / 振動緩和 / モードカップリング / フェルミ共鳴 / ミオグロビン / 非線型振動 / フレルミ共鳴 / ミオグロビンL / proteins / anharmonic vibration / vibrational reluxation / mode coupling / Fermi resonance / myoglobin / タンパク合体 / タンパク質機能 / 確率的アラインメント法 / 線形応答理論 / 分子動力学計 / アクアポリン / タンパク質複合体 / ダイナミクプログラミング / 確率的アライメント法 / ダイナミクス / ダイナミックプログラミング / 分子機能 / 線形応答 / NMR / 構造変化 / 結合部位 / モノヌクレオチド / 糖 / イムノグロブリン / protein complex / protein structure / protein function / neutron scattering / probabilistic alignment / linear response theory / molecular dynamics simulation / aquaporin / べん毛モーター / モーター制御 / 走化性 / 圧力 / 蛋白質構造 / MD / 大腸菌 / コレラ菌 / 回転制御 / 蛋白質間相互作用 / タンパク質間相互作用 / 光学顕微鏡 / MD計算 Less

Investigating ligand-controlled GPCR activation mechanisms by cutting edge simulationPrincipal InvestigatorOngoing
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 43040:Biophysics-related
- Research Institution
  Tokyo Institute of Technology
Studying the Function of Soft Molecular Systems by the Concerted Use of Theory and Experiment
- Principal Investigator
  
  田原太平
- Project Period (FY)
  2018
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Research Institution
  Institute of Physical and Chemical Research
回転分子モーター制御機構解明への再構成的アプローチOngoing
- Principal Investigator
  
  川岸郁朗
- Project Period (FY)
  2017 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Constructive Systems Biology
- Research Institution
  Hosei University
Support for International Activities of Studying the Function of Soft Molecular Systems by Concerted Use of Theory and Experiment
- Principal Investigator
  
  TAHARA Tahei
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Institute of Physical and Chemical Research
Flexibility, interactions, and function control mechanisms in multi-domain proteinsPrincipal Investigator
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  2015 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Tokyo Institute of Technology
  The University of Tokyo
Studying the Function of Soft Molecular Systems by Concerted Use of Theory and Experiment
- Principal Investigator
  
  TAHARA Tahei
- Project Period (FY)
  2013 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Institute of Physical and Chemical Research
Softness-function relationship in large molecules and molecular assemblies investigated at atomic resolutionPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  2013 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  Tokyo Institute of Technology
  The University of Tokyo
タンパク質複合体形成・解離に関わるモードカップリング解析法開発Principal Investigator
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  2011 – 2012
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
Structure modeling and functional analysis of rotary motor state proteins based on mutational informationPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  2011 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  The University of Tokyo
X線散漫散乱による生体分子の動的構造決定に向けた理論基盤の構築
- Principal Investigator
  
  城地保昌
- Project Period (FY)
  2009 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The Institute of Physical and Chemical Research
分子シミュレーションで探るABCトランスポーターの膜輸送動力発生機構
- Principal Investigator
  
  城地保昌
- Project Period (FY)
  2007 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Roles of hyper-anisotropic dynamics and frustration on protein function investigated in sub-msec orderPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  2007 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  The University of Tokyo
構造変化における蛋白質のエネルギー地形階層性と水和の役割
- Principal Investigator
  
  城地保昌
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
分子認識における蛋白質のエネルギー地形階層性と水和構造変化の役割Principal Investigator
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  2004 – 2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  The University of Tokyo
Functional Mechanism and Structural Organization of Biological Macromolecular Assemblies
- Principal Investigator
  
  TSUKIHARA Tomitake
- Project Period (FY)
  2004 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Osaka University
Development of simulation methods for biological supramolecular structure and function analysesPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  2004 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Underlying mechanism of bio-nano-machine investigated by massive molecular dynamics methodPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  2003 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bioinformatics/Life informatics
- Research Institution
  The University of Tokyo
Prediction of structure and function of protein complexes
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  2001 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Yokohama City University
構造ゲノム情報からの蛋白質のやわらかさと機能の関係を探るPrincipal Investigator
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (C)
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Energy Transfer in a Protein Molecule: From Chemical Reaction to Structural Change
- Principal Investigator
  
  KIDERA Akinori
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  Yokohama City University
  Kyoto University
Mechanism of the CD2/CD58 complex formation in immune systemPrincipal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  1999 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Kyoto University
タンパク質のエネルギー面階層性とモードカップリングPrincipal Investigator
- Principal Investigator
  
  北尾彰朗
- Project Period (FY)
  1997 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  物性一般(含基礎論)
- Research Institution
  Kyoto University
Administration of researches on principles of protein architecture
- Principal Investigator
  
  GO Nobuhiro
- Project Period (FY)
  1995 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  KYOTO UNIVERSITY
タンパク質立体構造の安定性・ダイナミックス・折れたたみ機構
- Principal Investigator
  
  YUTANI Katsuhide
- Project Period (FY)
  1995 – 1998
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  OSAKA UNIVERSITY
Dynamics of the Electron Transfer Reaction in Cytochrome b_5Principal Investigator
- Principal Investigator
  
  KITAO Akio
- Project Period (FY)
  1994 – 1995
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  KYOTO UNIVERSITY

[Book] In Silico創薬におけるスクリーニングの高速化、高精度化技術2018
- Author(s)
  北尾彰朗、畑宏明(第2章第2節著)
- Total Pages
  540
- Publisher
  技術情報協会
- Data Source
  KAKENHI-PROJECT-15H04357
[Book] In Silico創薬におけるスクリーニングの高速化、高精度化技術2018
- Author(s)
  北尾彰朗、畑宏明(第2章第2節著)
- Total Pages
  540
- Publisher
  技術情報協会
- ISBN
  9784861046889
- Data Source
  KAKENHI-PLANNED-25104002
[Book] Extension of the Normal Mode Concept: Principal Component Analysis, Jumping-Among-Minima Model and their Applicaions to Experimental Data Analysis(edited by Qiang Cui & lvet Bahar, in Normal Mode Analysis: Theory and Applications to Biological and Chemical Systems, Chapter 12)2006
- Author(s)
  Akio Kitao
- Data Source
  KAKENHI-PROJECT-16087202
[Book] Normal Mode Analysis : Theory and Applications to Biological and Chemical Systems, Chapter 122006
- Author(s)
  Akio Kitao
- Total Pages
  406
- Publisher
  Chapman ＆ Hall/CRC
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Book] Normal Mode Analysis : Theory and Applications to Biological and Chemical Systems, Chapter 122006
- Author(s)
  Akio Kitao
- Total Pages
  406
- Publisher
  Chapman & Hall/CRC
- Data Source
  KAKENHI-PROJECT-16087202
[Book] Normal Mode Analysis : Theory and Applications to Biological and Chemical Systems, Chapter 122006
- Author(s)
  Akio Kitao
- Total Pages
  406
- Publisher
  Chapman & Hall/CRC
- Data Source
  KAKENHI-PROJECT-15300103
[Book] Normal Mode Analysis : Theory and Applications to Biological and Chemical Systems, Chapter 122006
- Author(s)
  Akio Kitao
- Total Pages
  406
- Publisher
  Chapman & Hall/CRC
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] Haptic-Assisted Interactive Molecular Docking Incorporating Receptor Flexibility2019
- Author(s)
  Matthews Nick、Kitao Akio、Laycock Stephen、Hayward Steven
- Journal Title
  
  Journal of Chemical Information and Modeling
  
  Volume: 印刷中
- DOI
  10.1021/acs.jcim.9b00112
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Journal Article] Dissociation Process of a MDM2/p53 Complex Investigated by Parallel Cascade Selection Molecular Dynamics and the Markov State Model2019
- Author(s)
  Tran Duy Phuoc、Kitao Akio
- Journal Title
  
  The Journal of Physical Chemistry B
  
  Volume: 123 Pages: 2469-2478
- DOI
  10.1021/acs.jpcb.8b10309
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04357
[Journal Article] Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus2019
- Author(s)
  Y., Y. Ogawa, M. Kinoshita, N. Terahara, M. Shimada, N. Kodera, T. Ando, K. Namba, A. Kitao, K. Imada, T. Minamino
- Journal Title
  
  Structure
  
  Volume: 印刷中
- DOI
  10.1016/j.str.2019.03.017
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-26119003, KAKENHI-PROJECT-15H04357
[Journal Article] Similarities and Differences between Thymine(6?4)Thymine/Cytosine DNA Lesion Repairs by Photolyases2018
- Author(s)
  Dokainish Hisham M.、Kitao Akio
- Journal Title
  
  The Journal of Physical Chemistry B
  
  Volume: 122 Pages: 8537-8547
- DOI
  10.1021/acs.jpcb.8b07048
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04357
[Journal Article] Molecular dynamics simulation of bacterial flagella2018
- Author(s)
  Kitao Akio、Hata Hiroaki
- Journal Title
  
  Biophysical Reviews
  
  Volume: 10 Pages: 203-208
- DOI
  10.1007/s12551-017-0338-7
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-25104002
[Journal Article] Complex molecular systems: a frontier of molecular science2018
- Author(s)
  Tahei TAHARA, Akio KITAO, Yasuhisa MIZUTANI, Hideki KANDORI, and Masaaki FUJII
- Journal Title
  
  Physical Chemistry Chemical Physics
  
  Volume: 20 Pages: 2945-2946
- DOI
  10.1039/c8cp90010h
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-25104001, KAKENHI-PLANNED-25104005, KAKENHI-PROJECT-18H03986
[Journal Article] Binding free energy analysis of protein-protein docking model structures by evERdock2018
- Author(s)
  Takemura Kazuhiro、Matubayasi Nobuyuki、Kitao Akio
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 148 Pages: 105101-105101
- DOI
  10.1063/1.5019864
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K13550, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-26240045, KAKENHI-PROJECT-15H04357
[Journal Article] Multi-strand β-sheet of Alzheimer Aβ(1-40) folds to β-strip helix: implication for protofilament formation2018
- Author(s)
  Hayward Steven、Kitao Akio
- Journal Title
  
  Journal of Biomolecular Structure and Dynamics
  
  Volume: 37 Pages: 2143-2153
- DOI
  10.1080/07391102.2018.1477626
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Journal Article] Vibrational Energy Transfer from Heme through Atomic Contacts in Proteins2018
- Author(s)
  Yamashita Satoshi、Mizuno Misao、Tran Duy Phuoc、Dokainish Hisham、Kitao Akio、Mizutani Yasuhisa
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 122 Pages: 5877-5884
- DOI
  10.1021/acs.jpcb.8b03518
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-16K13933
[Journal Article] Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations2018
- Author(s)
  Shinobu Ai、Takemura Kazuhiro、Matubayasi Nobuyuki、Kitao Akio
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 149 Pages: 195101-195101
- DOI
  10.1063/1.5055799
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-15K13550
[Journal Article] Multi-strand β-sheet of Alzheimer Aβ(1-40) folds to β-strip helix: Implication for protofilament formation2018
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Journal of Biomolecular Structure and Dynamics
  
  Volume: 印刷中
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Journal Article] ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation2018
- Author(s)
  Takemura Kazuhiro、Sato Chika、Kitao Akio
- Journal Title
  
  The Journal of Physical Chemistry B
  
  Volume: 122 Pages: 7191-7200
- DOI
  10.1021/acs.jpcb.8b02756
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15H04357
[Journal Article] Origins of biological function in DNA and RNA hairpin loop motifs from replica exchange molecular dynamics simulation2018
- Author(s)
  Jacob B. Swadling, Kunihiko Ishii, Tahei Tahara and Akio Kitao
- Journal Title
  
  Physical Chemistry Chemical Physics
  
  Volume: 20 Pages: 2990-3001
- DOI
  10.1039/c7cp06355e
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Salt Bridge Formation between the I-BAR Domain and Lipids Increases Lipid Density and Membrane Curvature2017
- Author(s)
  Takemura K, Hanawa-Suetsugu K, Suetsugu S, Kitao A.
- Journal Title
  
  Scientific Reports
  
  Volume: 28 Pages: 1-10
- DOI
  10.1038/s41598-017-06334-5
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K07351, KAKENHI-PROJECT-17K19529, KAKENHI-PLANNED-15H05902, KAKENHI-PUBLICLY-17H06006, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] “Electron Fate and Mutational Robustness in the Mechanism of (6-4)Photolyase-Mediated DNA Repair”2017
- Author(s)
  Dokainish Hisham M.、Yamada Daichi、Iwata Tatsuya、Kandori Hideki、Kitao Akio
- Journal Title
  
  ACS Catal.
  
  Volume: 7 Pages: 4835-4845
- DOI
  10.1021/acscatal.7b00751
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K15103, KAKENHI-PLANNED-25104002, KAKENHI-PLANNED-25104009, KAKENHI-PROJECT-15H02391, KAKENHI-PROJECT-15H04357
[Journal Article] Molecular Dynamics Study of Nitrogen-Pyramidalized Bicyclic beta-Proline Oligomers: Length-Dependent Convergence to Organized Structures2017
- Author(s)
  Yuko Otani, Satoshi Watanabe, Tomohiko Ohwada, Akio Kitao
- Journal Title
  
  J. Phys. Chem. B,
  
  Volume: 121 Pages: 100-109
- DOI
  10.1021/acs.jpcb.6b10668
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PUBLICLY-16H00822, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-26293002, KAKENHI-PROJECT-16K08157
[Journal Article] Structure of the MotA/B Proton Channel2017
- Author(s)
  Kitao Akio、Nishihara Yasutaka
- Journal Title
  
  Methods in molecular biology
  
  Volume: 1593 Pages: 133-145
- DOI
  10.1007/978-1-4939-6927-2_10
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Protein-Ligand Dissociation Simulated by Parallel Cascade Selection Molecular Dynamics2017
- Author(s)
  Tran Duy Phuoc、Takemura Kazuhiro、Kuwata Kazuo、Kitao Akio
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 14 Pages: 404-417
- DOI
  10.1021/acs.jctc.7b00504
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] High quality rendering of protein dynamics in space filling mode2017
- Author(s)
  Matthews Nick、Easdon Robert、Kitao Akio、Hayward Steven、Laycock Stephen
- Journal Title
  
  Journal of Molecular Graphics and Modelling
  
  Volume: 78 Pages: 158-167
- DOI
  10.1016/j.jmgm.2017.09.017
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Functional Conversion of CPD and (6-4) Photolyases by Mutation2016
- Author(s)
  Daichi Yamada, Hisham M. Dokainish, Tatsuya Iwata, Junpei Yamamoto, Tomoko Ishikawa, Takeshi Todo, Shigenori Iwai, Elizabeth D. Getzoff, Akio Kitao, and Hideki Kandori
- Journal Title
  
  Boichemistry
  
  Volume: 55 Pages: 4173-4183
- DOI
  10.1021/acs.biochem.6b00361
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PLANNED-25104009, KAKENHI-PROJECT-15H05713, KAKENHI-PROJECT-15H02391, KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-16K07318, KAKENHI-PROJECT-16K07321
[Journal Article] Parallel cascade selection molecular dynamics for efficient conformational sampling and free energy calculation of proteins2016
- Author(s)
  Akio Kitao, Tyuhei Harada, Yasutaka Nishihara and Duy Phuoc Tran
- Journal Title
  
  AIP Conference Proceedings
  
  Volume: 1790 Pages: 020013-020013
- DOI
  10.1063/1.4968639
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-15J03797
[Journal Article] Computational Assignment of the Histidine Protonation State in (6-4) Photolyase Enzyme and Its Effect on the Protonation Step2016
- Author(s)
  Hisham MM Dokainish and Akio Kitao
- Journal Title
  
  ACS Catalysis
  
  Volume: 6 Pages: 5500-5507
- DOI
  10.1021/acscatal.6b01094
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environments2016
- Author(s)
  Akio Kitao and Kazuhiro Takemura
- Journal Title
  
  Curr Opin Struct Biol
  
  Volume: 42 Pages: 50-58
- DOI
  10.1016/j.sbi.2016.10.014
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Eritoran inhibits S100A8-mediated TLR4/MD-2 activation and tumor growth by changing the immune microenvironment2016
- Author(s)
  Deguchi A, Tomita T, Ohto U, Takemura K, Kitao A, Akashi-Takamura, S, Miyake K, and Maru Y.
- Journal Title
  
  Oncogene
  
  Volume: 35 Pages: 1445-1456
- DOI
  10.1038/onc.2015.211
- Peer Reviewed / Acknowledgement Compliant / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K06842, KAKENHI-PROJECT-26440063, KAKENHI-PROJECT-15K14471, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-26711002, KAKENHI-PROJECT-15K09491
[Journal Article] Nontargeted Parallel Cascade Selection Molecular Dynamics for Enhancing the Conformational Sampling of Proteins2015
- Author(s)
  Ryuhei Harada and Akio Kitao
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 11 Pages: 5493-5502
- DOI
  10.1021/acs.jctc.5b00723
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357, KAKENHI-PROJECT-15J03797, KAKENHI-PROJECT-26840056
[Journal Article] Design, synthesis and structure–activity relationship studies of novel sirtuin 2 (SIRT2) inhibitors with a benzamide skeleton.2015
- Author(s)
  Taki Sakai, Yotaro Matsumoto, Minoru Ishikawa, Kazuyuki Sugita, Yuichi Hashimoto, Nobuhiko Wakai, Akio Kitao, Era Morishita, Chikashi Toyoshima, Tomoatsu Hayashi, Tetsu Akiyama
- Journal Title
  
  Bioorganic & Medicinal Chemistry
  
  Volume: 23 Pages: 328-339
- DOI
  10.1016/j.bmc.2014.11.027
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-22112004, KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-24590136, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-25293027, KAKENHI-PROJECT-26293025
[Journal Article] Drug Targeting Based on a New Concept-Targeting Against TLR4 as an Example2015
- Author(s)
  Yoshiro Maru, Takeshi Tomita, Atsuko Deguchi, Katsuaki Ieguchi, Morichuka Takita, Fujiko Tsukahara, Kazuhiro Takemura, Akio Kitao, and Fabian Gusovsky
- Journal Title
  
  Endocrine Metabolic & Immune Disorders-Drug Targets
  
  Volume: 15 Pages: 83-87
- DOI
  10.2174/187153031502150522123746
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Gate-controlled proton diffusion and protonation-induced ratchet motion in the stator of the bacterial flagellar motor2015
- Author(s)
  Yasutaka Nishihara and Akio Kitao
- Journal Title
  
  Proc. Natl. Acad. Sci. U.S.A.
  
  Volume: 112 Pages: 7737-7742
- DOI
  10.1073/pnas.1502991112
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Monte Carlo Sampling with Linear Inverse Kinematics for Simulation of Proteins Flexible Regions2015
- Author(s)
  Steven Hayward and Akio Kitao
- Journal Title
  
  J. Chem. Theor. Comput.
  
  Volume: 11 Pages: 3895-3905
- DOI
  10.1021/acs.jctc.5b00215
- Peer Reviewed / Acknowledgement Compliant / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-15H04357
[Journal Article] Ligand-Induced Protein Responses and Mechanical Signal Propagation Described by Linear Response Theories2014
- Author(s)
  Lee-Wei Yang, Akio Kitao, Bang-chieh Huang and Nobuhiro Go
- Journal Title
  
  Biophysical Journal
  
  Volume: 107 Pages: 1415-1425
- DOI
  10.1016/j.bpj.2014.07.049
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002
[Journal Article] カスケード型超並列シミュレーションによるタンパク質構造遷移のパスウェイ探索2014
- Author(s)
  西原泰孝,　原田隆平,　北尾彰朗
- Journal Title
  
  統計数理
  
  Volume: 62 Pages: 273-284
- NAID
  120006020818
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066
[Journal Article] Mechanism of Deep-sea Fish α-Actin Pressure Tolerance Investigated by Molecular Dynamics Simulations2014
- Author(s)
  Nobuyuki Wakai and Akio Kitao
- Journal Title
  
  PLoS ONE
  
  Volume: 9
- DOI
  10.1371/journal.pone.0085852
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002
[Journal Article] Conformational Transition Pathway and Free Energy Analyses of Proteins by Parallel Cascade Selection Molecular Dynamics (PaCS-MD)2014
- Author(s)
  Ryuhei Harada, Yasutaka Nishihara, Nobuhiko Wakai, and Akio Kitao
- Journal Title
  
  International Conference of Computational Methods in Sciences and Engineering 2014 (ICCMSE 2014) AIP Conf. Proc.
  
  Volume: 1618 Pages: 86-86
- DOI
  10.1063/1.4897682
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-26840056
[Journal Article] カスケード型超並列シミュレーションによるタンパク質構造遷移のパスウェイ探索2014
- Author(s)
  西原泰孝,　原田隆平,　北尾彰朗
- Journal Title
  
  統計数理
  
  Volume: 62 Pages: 273-284
- NAID
  120006020818
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-25104002
[Journal Article] Molecular Simulation Methods to Enhance Soft Protein Motions2014
- Author(s)
  原田隆平,北尾彰朗
- Journal Title
  
  Biophysics
  
  Volume: 54 Issue: 3 Pages: 167-171
- DOI
  10.2142/biophys.54.167
- NAID
  130004719369
- ISSN
  0582-4052, 1347-4219
- Language
  Japanese
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002, KAKENHI-PROJECT-26840056
[Journal Article] TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P₂.2014
- Author(s)
  Nobuaki Takahashi, Sayaka Hamada-Nakahara, Yuzuru Itoh, Kazuhiro Takemura, Atsushi Shimada,Yoshifumi Ueda, Manabu Kitamata, Rei Matsuoka, Kyoko Hanawa-Suetsugu, Yosuke Senju, Masayuki X. Mori, Shigeki Kiyonaka, Daisuke Kohda, Akio Kitao, Yasuo Mori and Shiro Suetsugu
- Journal Title
  
  Ｎａｔｕｒｅ　Ｃｏｍｍｕｎｉｃａｔｉｏｎｓ
  
  Volume: 5 Pages: 4994-4994
- DOI
  10.1038/ncomms5994
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-24249017, KAKENHI-PROJECT-24687014, KAKENHI-PLANNED-25104002, KAKENHI-PUBLICLY-25121726, KAKENHI-ORGANIZER-26111001, KAKENHI-PLANNED-26111004, KAKENHI-PROJECT-26291037, KAKENHI-PROJECT-26460296
[Journal Article] MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics2013
- Author(s)
  Yu Yamamori and Akio Kitao
- Journal Title
  
  Journal of Chemical Physics
  
  Volume: 139
- DOI
  10.1063/1.4823743
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002
[Journal Article] 分子シミュレーションによるタンパク質ダイナミクスとテラヘルツ分光2013
- Author(s)
  城地保昌,北尾彰朗
- Journal Title
  
  化学工業
  
  Volume: 64 Pages: 7-13
- Data Source
  KAKENHI-PROJECT-23370066
[Journal Article] Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins2013
- Author(s)
  Vladimir A. Meshcheryakov, Akio Kitao, Hideyuki Matsunami and Fadel A. Samatey
- Journal Title
  
  Acta Crystallographica Section D-Biological Crystallography
  
  Volume: D69 Pages: 812-820
- DOI
  10.1107/s0907444913002102
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066
[Journal Article] Free-energy analysis of lysozyme–triNAG binding modes with all-atom molecular dynamics simulation combined with the solution theory in the energy representation2013
- Author(s)
  K. Takemura, R. R. Burri, T. Ishikawa, T. Ishikura, S. Sakuraba, N. Matubayasi, K. Kuwata, and A. Kitao
- Journal Title
  
  Chemical physics letters
  
  Volume: 559 Pages: 94-98
- DOI
  10.1016/j.cplett.2012.12.063
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20118002, KAKENHI-PROJECT-21300111, KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-23370068, KAKENHI-PROJECT-23651202, KAKENHI-ORGANIZER-20118001, KAKENHI-PUBLICLY-23107705
[Journal Article] A theoretical study of the two binding modes between lysozyme and tri-NAG with an explicit solvent model based on the fragment molecular orbital method.2013
- Author(s)
  T. Ishikawa, R. R. Burri, Y. O. Kamatari, S. Sakuraba, N. Matubayasi, A. Kitao, and K. Kuwata
- Journal Title
  
  Phys Chem Chem Phys
  
  Volume: 15 Pages: 3646-3654
- DOI
  10.1039/c3cp42761g
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20118002, KAKENHI-PROJECT-21300111, KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-23370068, KAKENHI-PROJECT-23651202, KAKENHI-PROJECT-24570180, KAKENHI-ORGANIZER-20118001, KAKENHI-PUBLICLY-23107705
[Journal Article] 分子シミュレーションによるタンパク質ダイナミクスとテラヘルツ分光2013
- Author(s)
  城地保昌,北尾彰朗
- Journal Title
  
  化学工業
  
  Volume: 64 Pages: 7-13
- Data Source
  KAKENHI-PLANNED-25104002
[Journal Article] CyClus: A fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body protein-protein docking decoys2013
- Author(s)
  Satoshi Omori and Akio Kitao
- Journal Title
  
  Proteins: Structure, Function, and Bioinformatics
  
  Volume: 81 Pages: 1005-1016
- DOI
  10.1002/prot.24252
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PUBLICLY-23107705
[Journal Article] Parallel cascade selection molecular dynamics (PaCS-MD) to generate conformational transition pathway2013
- Author(s)
  Ryuhei Harada and Akio Kitao
- Journal Title
  
  Journal of Chemical Physics
  
  Volume: 139
- DOI
  10.1063/1.4813023
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PLANNED-25104002
[Journal Article] Evaluation of protein-protein docking model structures using all-atom molecular dynamics simulations combined with the solution theory in the energy representation2012
- Author(s)
  K. Takemura, H. Guo, S. Sakuraba, N. Matubayasi, and A. Kitao
- Journal Title
  
  J. Chem. Phys.
  
  Volume: 137
- DOI
  10.1063/1.4768901
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-20118002, KAKENHI-PROJECT-21300111, KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-23651202, KAKENHI-ORGANIZER-20118001, KAKENHI-PUBLICLY-23107705
[Journal Article] Water model tuning for improved reproduction of rotational diffusion and NMR spectral density2012
- Author(s)
  Kazuhiro Takemura and Akio Kitao
- Journal Title
  
  J. Phys. Chem. B
  
  Volume: 116 Pages: 6279-6287
- DOI
  10.1021/jp301100g
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-23370066, KAKENHI-PUBLICLY-23107705
[Journal Article] The fast-folding mechanism of villin headpiece　subdomain studied by multi-scale distributed computing2012
- Author(s)
  Ryuhei Harada, Akio Kitao
- Journal Title
  
  Journal of Chemical Theory and Computation
  
  Volume: 8(1) Pages: 290-299
- DOI
  10.1021/ct200363h
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23107705, KAKENHI-PROJECT-23370066
[Journal Article] Screw motion regulates multiple functions of T4 phage protein2012
- Author(s)
  Nishima W, Kanamaru S, Arisaka F, Kitao A
- Journal Title
  
  Journal of The American Chemical Society
  
  Volume: 133(34) Pages: 13571-13576
- DOI
  10.1021/ja204451g
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21770164, KAKENHI-PUBLICLY-23107705, KAKENHI-PUBLICLY-23121538, KAKENHI-PROJECT-23370066, KAKENHI-PROJECT-23570190
[Journal Article] Multi-scale free energy landscape calculation method by combination of coarse-grained and all-atom models2011
- Author(s)
  Ryuhei Harada, Akio Kitao
- Journal Title
  
  Chemical Physics Letters 503(1-3)
  
  Pages: 145-152
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Exploring the Folding Free Energy Landscape of a β-Hairpin2011
- Author(s)
  Ryuhei Harada, Akio Kitao
- Journal Title
  
  The Journal of Physical Chemistry B
  
  Volume: 115(27) Pages: 8806-8812
- DOI
  10.1021/jp2008623
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23107705, KAKENHI-PROJECT-23370066
[Journal Article] Transform and relax sampling for highly anisotropic systems:2011
- Author(s)
  Akio Kitao
- Journal Title
  
  The Journal of Chemical Physics
  
  Volume: 135(4) Pages: 45101-45101
- DOI
  10.1063/1.3613676
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-23107705, KAKENHI-PROJECT-23370066
[Journal Article] Enhanced resolution of molecular recognition to distinguish structurally similar molecules by different conformational responses of a protein upon ligand binding2011
- Author(s)
  Mariko Higuchi, Jumpei Fujii, Yoshiteru, Yonetani, Akio Kitao, Nobuhiro Go
- Journal Title
  
  Journal of Structural Biology 173
  
  Pages: 20-28
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Mechanical unfolding of bacterial flagellar filament protein by molecular dynamics simulation2010
- Author(s)
  Choon-Peng Chng, Akio Kitao
- Journal Title
  
  J.Mol.Graph.Model. 28
  
  Pages: 548-554
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export2010
- Author(s)
  Yumiko Saijo-Hamamoto, Katsumi Imada, Tohru Minamino, May Kihara, Masafumi Shimada, Akio Kitao, Keiichi Namba
- Journal Title
  
  Mol.Microbiol. V76(1)
  
  Pages: 260-268
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export2010
- Author(s)
  Yumiko Saijo-Hamamoto, Katsumi Imada, Tohru Minamino, May Kihara, Masafumi Shimada, Akio Kitao, Keiichi Namba
- Journal Title
  
  Mol. Microbiol 76(1)
  
  Pages: 260-268
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] The Effect of End Constraints on Protein Loop Kinematics2010
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Biophys.J. 98(9)
  
  Pages: 1976-1985
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export2010
- Author(s)
  Yumiko Saijo-Hamamoto, Katsumi Imada, Tohru Minamino, May Kihara, Masafumi Shimada, Akio Kitao, Keiichi Namba
- Journal Title
  
  Mol.Microbiol. 76(1)
  
  Pages: 260-268
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Mechanical unfolding of bacterial flagellar filament protein by molecular dynamics simulation2010
- Author(s)
  Choon-Peng Chng, Akio Kitao
- Journal Title
  
  J. Mol. Graph. Model 28
  
  Pages: 548-554
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Detecting coupled collective motions in protein by independent subspace analysis2010
- Author(s)
  Shun Sakuraba, Yasumasa Joti, Akio Kitao
- Journal Title
  
  Journal of Chemical Physics 133(18)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Mechanical unfolding of bacterial flagellar filament protein by molecular dynamics simulation2010
- Author(s)
  Choon-Peng Chng, Akio Kitao
- Journal Title
  
  J.Mol.Graph.Model. 28
  
  Pages: 548-554
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] The Effect of End Constraints on Protein Loop Conformations2010
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Biophys. J. 98
  
  Pages: 1976-1985
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Detecting coupled collective motions in protein by independent subspace analysis2010
- Author(s)
  S.Sakuraba, Y.Joti, A.Kitao
- Journal Title
  
  J.Chem.Phys.
  
  Volume: 133
- Peer Reviewed
- Data Source
  KAKENHI-PUBLICLY-21023006
[Journal Article] Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure2009
- Author(s)
  Hannes H. Loeffler, Akio Kitao
- Journal Title
  
  Biophys.J. Vol.97
  
  Pages: 2541-2549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Multiple Markov transition matrix method: Obtaining the stationary probability distribution from multiple simulations2009
- Author(s)
  Shun Sakuraba, Akio Kitao
- Journal Title
  
  J.Comp.Chem. 30
  
  Pages: 1850-1858
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure2009
- Author(s)
  Hannes H.Loeffler, Akio Kitao
- Journal Title
  
  Biophys J. 97
  
  Pages: 2541-2549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure2009
- Author(s)
  Hannes H. Loeffler, Akio Kitao
- Journal Title
  
  Biophys.J. V97
  
  Pages: 2541-2549
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] DTA: Dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins2009
- Author(s)
  Wataru Nishima, Guoying Qi, Steven Hayward, Akio Kitao
- Journal Title
  
  Bioinformatics 25(5)
  
  Pages: 628-635
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] DTA: Dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins2009
- Author(s)
  Wataru Nishima, Guoying Qi, Steven Hayward, Akio Kitao
- Journal Title
  
  Bioinformatics 25(5)
  
  Pages: 628-635
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Principal Component Analysis of Native Ensembles of Biomolecular Structures (PCA_NEST) : Insights into Functional Dynamics2009
- Author(s)
  Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao
- Journal Title
  
  Bioinformatics 25(5)
  
  Pages: 606-614
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Multiple Markov transition matrix method: Obtaining the stationary probability distribution from multiple simulations2009
- Author(s)
  Shun Sakuraba, Akio Kitao
- Journal Title
  
  J. Comp. Chem 30
  
  Pages: 1850-1858
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Multiple Markov transition matrix method : Obtaining the stationary probability distribution from multiple simulations2009
- Author(s)
  Shun Sakuraba, Akio Kitao
- Journal Title
  
  J.Comp.Chem. 30
  
  Pages: 1850-1858
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure2009
- Author(s)
  Hannes H. Loeffler, Akio Kitao
- Journal Title
  
  Biophys. J 97
  
  Pages: 2541-2549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Principal Component Analysis of Native Ensembles of Biomolecular Structures (PCA_NEST): Insights into Functional Dynamics2009
- Author(s)
  Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao
- Journal Title
  
  Bioinformatics 25(5)
  
  Pages: 606-614
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Multiple Markov transition matrix method : Obtaining the stationary probability distribution from multiple simulations2009
- Author(s)
  Shun Sakuraba, Akio Kitao
- Journal Title
  
  J.Comp.Chem. V30
  
  Pages: 1850-1858
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration effects on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, Akio Kitao
- Journal Title
  
  Biophys.J. 94
  
  Pages: 4435-4443
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration-Dependent Protein Dynamics Revealed by Molecular Dynamics Simulation of Crystalline Staphylococcal Nuclease2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, and Akio Kitao
- Journal Title
  
  J. Phys. Chem. B Vol.112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 【総説】細菌べん毛繊維は分子間相互作用とフラストレーションを利用して超らせん構造の変化を制御する2008
- Author(s)
  北尾彰朗,今田勝巳,難波啓一
- Journal Title
  
  生物物理 40(1)
  
  Pages: 11-17
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration effect on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Journal Title
  
  Biophysical Journal 94(掲載確定)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Thermal Unfolding Simulations of Bacterial Flagellin: Insight into its Refolding before Assembly2008
- Author(s)
  Choon-Peng Chng and Akio Kitao
- Journal Title
  
  Biophys. J (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration effects on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, and Akio Kitao
- Journal Title
  
  Biophys. J (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration effects on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, and Akio Kitao
- Journal Title
  
  Biophys. J. (In press)
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-Dependent Protein Dynamics Revealed by Molecular Dynamics Simulation of Crystalline Staphylococcal Nuclease2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, Akio Kitao
- Journal Title
  
  J. Phys. Chem. B 112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-Dependent Protein Dynamics Revealed by Molecular Dynamics Simulation of Crystalline Staphylococcal Nuclease2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, Akio Kitao
- Journal Title
  
  J.Phys.Chem.B 112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Thermal Unfolding Simulations of Bacterial Flagellin: Insight into its Refolding before Assembly2008
- Author(s)
  Choon-Peng Chng, Akio Kitao
- Journal Title
  
  Biophys. J 94
  
  Pages: 3858-3871
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 【総説】細菌べん毛繊維は分子間相互作用とフラストレーションを利用して超らせん構造の変化を制御する2008
- Author(s)
  北尾彰朗, 今田勝巳, 難波啓一
- Journal Title
  
  生物物理 Vol.40,No.1
  
  Pages: 11-17
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration affects both harmonic and anharmonic nature of protein dynamics2008
- Author(s)
  Hiroshi Nakagawa, Yasumasa Joti, Akio Kitao, Mikio Kataoka
- Journal Title
  
  Biophys. J 95
  
  Pages: 2916-2923
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-dependent protein dynamics revealed by molecular dynamics simuiation of crystalline Staphylococcal nuclease2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Journal Title
  
  Journal of Physical Chemistry B 112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Hydration effects on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, Akio Kitao
- Journal Title
  
  Biophys. J 94
  
  Pages: 4435-4443
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 【総説】細菌べん毛繊維は分子間相互作用とフラストレーションを利用して超らせん構造の変化を制御する2008
- Author(s)
  北尾彰朗, 今田勝巳, 難波啓一
- Journal Title
  
  生物物理 Vol.40,(1)
  
  Pages: 11-17
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-Dependent Protein Dynamics Revealed by Molecular Dynamics Simulation of Crystalline Staphylococcal Nuclease2008
- Author(s)
  Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, and Akio Kitao
- Journal Title
  
  J. Phys. Chem. B 112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Hydration effect on low-frequency protein dynamics observed in simulated neutron scattering spectra2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Journal Title
  
  Biophysical Journal 94
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19042005
[Journal Article] Hydration-dependent protein dynamics revealed by molecular dynamics simulation of crystalline Staphylococcal nuclease2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Journal Title
  
  Journal of Physical Chemistry B 112
  
  Pages: 3522-3528
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19042005
[Journal Article] Hydration affects both harmonic and anharmonic nature of protein dynamics2008
- Author(s)
  Hiroshi Nakagawa, Yasumasa Joti, Akio Kitao, Mikio Kataoka
- Journal Title
  
  Biophys.J. 95
  
  Pages: 2916-2923
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Thermal Unfolding Simulations of Bacterial Flagellin: Insight into its Refolding before Assembly2008
- Author(s)
  Choon-Peng Chng and Akio Kitao
- Journal Title
  
  Biophys. J. (In press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 【総説】細菌べん毛繊維は分子間相互作用とフラストレーションを利用して超らせん構造の変化を制御する2008
- Author(s)
  北尾彰朗, 今田勝巳, 難波啓一
- Journal Title
  
  生物物理 40(1)
  
  Pages: 11-17
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Thermal Unfolding Simulations of Bacterial Flagellin : Insight into its Refolding before Assembly2008
- Author(s)
  Choon-Peng Chng, Akio Kitao
- Journal Title
  
  Biophys.J. 94
  
  Pages: 3858-3871
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint.2007
- Author(s)
  Tadaomi Furuta, Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, Akio Kitao
- Journal Title
  
  Journal of Structural Biology 157
  
  Pages: 481-499
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperaturer molecular dynamics simulation2007
- Author(s)
  Lars Meinhold, Jeremy C. Smith, Akio Kitao, Ahmed H. Zewail
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 104(44)
  
  Pages: 17261-17265
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation2007
- Author(s)
  Atsushi Tokuhisa, Yasumasa Joti, Hiroshi Nakagawa, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Phys. Rev. E 75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation.2007
- Author(s)
  Atsushi Tokuhisa, Yasumasa Joti, Hiroshi Nakagawa, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Phys. Rev. E Vol.75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint2007
- Author(s)
  Tadaomi Furuta, Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, Akio Kitao
- Journal Title
  
  Journal of Structural Biology 157
  
  Pages: 481-490
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperature molecular dynamics simulation Lars Meinhold. S2007
- Author(s)
  Lars Meinhold, Jeremy C. Smith, Akio Kitao, Ahmed H.Zewail
- Journal Title
  
  Proc.Natl.Acad.Sci.USA 104(44)
  
  Pages: 17261-17265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperature molecular dynamics simulation.2007
- Author(s)
  Meinhold, L., Smith, J.C., Kitao, A., *Zewail, A.H.
- Journal Title
  
  PNAS. 104(44)
  
  Pages: 17261-17265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation2007
- Author(s)
  Tokuhisa, A., Joti, Y., Nakagawa, H., Kitao, A., & Kataoka, M.
- Journal Title
  
  Physical Review E 75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19042005
[Journal Article] Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation2007
- Author(s)
  Atsushi Tokuhisa, Yasumasa Joti, Hiroshi Nakagawa, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Phys.Rev.E 75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Effects of Water Model and Simulation Box Size on Protein Diffusional Motions2007
- Author(s)
  Kazuhiro Takemura, Akio Kitao
- Journal Title
  
  J.Phys.Chem.B 111
  
  Pages: 11870-11872
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint2007
- Author(s)
  Taaomi Furuta, Hieyuki Matsunami, Katsumi Imada, Keiichi Namba and Akio Kitao
- Journal Title
  
  Fadel A. Samatey, J. Struct. Biol Vol.l57
  
  Pages: 481-491
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint2007
- Author(s)
  Tadaomi Furuta, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, and Akio Kitao
- Journal Title
  
  Fadel A. Samatey, J. Struct. Biol. Vol.157
  
  Pages: 481-491
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Effects of Water Model and Simulation Box Size on Protein Diffusional Motions2007
- Author(s)
  Kazuhiro Takemura, Akio Kitao
- Journal Title
  
  J. Phys. Chem. B 111
  
  Pages: 11870-11872
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperaturer molecular dynamics simulation Lars Meillhold. S2007
- Author(s)
  Jeremy C. Smith, Akio Kitao and Ahmed H. Zewail
- Journal Title
  
  Proc. Natl. Acad. Sci. USA Vol.104,No.4
  
  Pages: 17261-17265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperaturer molecular dynamics simulation Lars Meinhold. S2007
- Author(s)
  Lars Meinhold, Jeremy C. Smith, Akio Kitao, Ahmed H. Zewail
- Journal Title
  
  Proc. Natl. Acad. Sci. USA 104(44)
  
  Pages: 17261-17265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Non-Gaussian behavior of elasticincoherent neutron scattering profiles of proteins studied by molecular dynamics simulation2007
- Author(s)
  Atsusi Tokuhisa, Yasumasa Joti, Hiroshi Nakagawa, Akio Kitao, Kaoru Shibata Mikio Kataoka
- Journal Title
  
  Phys. Rev. E Vol.75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation2007
- Author(s)
  Tokuhisa, A., Joti, Y., Nakagawa, H. Kitao, A., & Kataoka, M.
- Journal Title
  
  Physical Review E 75
  
  Pages: 41912-41912
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint2007
- Author(s)
  Tadaomi Furuta, Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, Akio Kitao
- Journal Title
  
  Journal of Structural Biology 157
  
  Pages: 481-490
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Effects of Water Model and Simulation Box Size on Protein Diffusional Motions2007
- Author(s)
  Kazuhiro Takemura and Akio Kitao
- Journal Title
  
  J. Phys. Chem. B Voll.111
  
  Pages: 11870-11872
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Effects of Water Model and Simulation Box Size on Protein Diffusional Motions2007
- Author(s)
  Kazuhiro Takemura and Akio Kitao
- Journal Title
  
  J. Phys. Chem. B Vol.111
  
  Pages: 11870-11872
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19370062
[Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint2007
- Author(s)
  Tadaomi Furuta, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba, Akio Kitao
- Journal Title
  
  Fadel A. Samatey, J. Struct. Biol 157
  
  Pages: 481-491
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperaturer molecular dynamics simulation Lars Meinhold. S2007
- Author(s)
  Jeremy C. Smith, Akio Kitao and Ahmed H. Zewail
- Journal Title
  
  Proc. Natl. Acad. Sci. USA Vol.104(44)
  
  Pages: 17261-17265
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations2006
- Author(s)
  Hiroshi Nakagawa, Atsushi Tokuhisa,, H. Kamikubo, Yasumasa Joti, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Material Science and Engineering A 442
  
  Pages: 356-360
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A. Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc. Natl. Acad. Sci 103
  
  Pages: 4894-4899
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations2006
- Author(s)
  Nakagawa, H., Tokuhisa, A., Kamikubo, H., Joti, Y., Kitao, A., Kataoka, M.
- Journal Title
  
  Materials Science and Engineering : A 442
  
  Pages: 356-360
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006
- Author(s)
  *Kitao, A., Yonekura, K., Maki-Yonekura, S., Samatey, F.A., Imada, K., Namba, K., Go, N.
- Journal Title
  
  Proc. Nat'l. Acad. Sci. U.S.A. 103
  
  Pages: 4894-4899
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Molecular Dynamics Simulations of NAD+-induced Domain Closure in Horse Liver Alcohol Dehydrogenase_2006
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Biophysical Journa1 91
  
  Pages: 1823-1831
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of 15N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry 44
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of ^<15>N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry (In press)
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of 15N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magn. Reson. Chem 44
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of 15N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry 44
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-coupled protein boson peak measured by incoherent neutron scattering2006
- Author(s)
  H.Nakagawa, M.Kataoka, Y.Joti, A.Kitao, K.Shibata, A.Tokuhisa, I.Tsukushi, N.Go
- Journal Title
  
  Physica B 385-385
  
  Pages: 871-873
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 分子シミュレーションと中性子散乱による蛋白質ダイナミクスの研究2006
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  分子シミュレーション研究会会誌「アンサンブル」 8
  
  Pages: 44-47
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 蛋白質の効率的機能を支えるメカニズム2006
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  蛋白質核酸酵素 51
  
  Pages: 972-978
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A.Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc.Natl.Acad.Sci. 103(13)
  
  Pages: 4894-4899
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations2006
- Author(s)
  Hiroshi Nakagawa, Atsushi Tokuhisa, H.Kamikubo, Yasumasa Joti, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Material Science and Engineering A 442
  
  Pages: 356-360
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-coupled protein boson peak measured by incoherent neutron scattering2006
- Author(s)
  Nakagawa, H., Kataoka, M., Joti, Y., Kitao, A., Shibata, K., Tokuhisa, A., Tsukushi, I., Go, N
- Journal Title
  
  Physica B 385-386
  
  Pages: 871-873
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Molecular Dynamics Simulations of NAD+-induced Domain Closure in Horse Liver Alcohol Dehydrogenase2006
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Biophysical Journal 91
  
  Pages: 1823-1831
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of ^<15>N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry (In press)
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] 分子シミュレーションと中性子散乱による蛋白質ダイナミクスの研究2006
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  分子シミュレーション研究会会誌「アンサンブル」 8
  
  Pages: 44-47
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A.Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc. Natl. Acad. Sci. 103(13)
  
  Pages: 4893-4899
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006
- Author(s)
  *Kitao, A., Yonekura, K., Maki-Yonekura, S., Samatey, F.A., Imada, K., Namba, K., Go, N
- Journal Title
  
  Proc. Natl. Acad. Sci. USA 103
  
  Pages: 4894-4899
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations2006
- Author(s)
  Hiroshi Nakagawa, Atsushi Tokuhisa, H.Kamikubo, Yasumasa Joti, Akio Kitao, Kaoru Shibata, Mikio Kataoka
- Journal Title
  
  Material Science and Engineering A 442
  
  Pages: 356-360
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A. Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc. Natl. Acad. Sci. 103 (13)
  
  Pages: 4894-4899
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A.Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc.Natl.Acad.Sci. 103(13)
  
  Pages: 4894-4899
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006
- Author(s)
  A.Kitao
- Journal Title
  
  Proc. Nat'l. Acad. Sci. U.S.A. 103
  
  Pages: 4894-4899
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] 蛋白質の効率的機能を支えるメカニズム2006
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  蛋白質核酸酵素 51(8)
  
  Pages: 972-978
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Hydration-coupled protein boson peak measured by incoherent neutron scattering2006
- Author(s)
  H.Nakagawa, M.Kataoka, Y.Joti, A.Kitao, K.Shibata, A.Tokuhisa, I.Tsukushi, N.Go
- Journal Title
  
  Physica B 385-386
  
  Pages: 871-873
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 蛋白質の効率的機能を支えるメカニズム2006
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  蛋白質核酸酵素 51 (8)
  
  Pages: 972-978
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures2006
- Author(s)
  Akio Kitao, Koji Yonekura, Saori Maki-Yonekura, Fadel A.Samatey, Katsumi Imada, Keiichi Namba, Nobuhiro Go
- Journal Title
  
  Proc.Natl.Acad.Sci. 103(13)
  
  Pages: 4894-4899
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] Amplitudes and directions of intemal protein motions from a JAM analysis of 15N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry 44
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Hydration-coupled protein boson peak measured by incoherent neutron scattering2006
- Author(s)
  Hiroshi Nakagawa, Mikio Kataoka, Yasumasa Joti, Akio Kitao, Kaoru Shibata, Atsushi Tokuhisa, I. Tsukushi, Nobuhiro Go
- Journal Title
  
  Physica B 385-6
  
  Pages: 871-873
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Amplitudes and directions of internal protein motions from a JAM analysis of ^<15>N relaxation data2006
- Author(s)
  Akio Kitao, Gerhard Wagner
- Journal Title
  
  Magnetic Resonance in Chemistry (In prees)
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Molecular Dynamics Simulations of NAD+-induced Domain Closure in Horse Liver Alcohol Dehydrogenase2006
- Author(s)
  Steven Hayward, Akio Kitao
- Journal Title
  
  Biophysical Journal 91
  
  Pages: 1823-1831
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Molecular Dynamics Simulations of NAD+-Induced Domain Closure in Horse Liver Alcohol Dehydrogenase2006
- Author(s)
  Hayward, S., Kitao, A
- Journal Title
  
  Biophysical Journal 91
  
  Pages: 1823-1831
- Data Source
  KAKENHI-PROJECT-18031006
[Journal Article] 生体超分子のユニバーサルジョイント-in silicoで探る細菌べん毛フックのメカニズム,2005
- Author(s)
  北尾彰朗, Fadel A.Samatey, 松波秀行, 今田勝巳, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1335-1340
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 生体超分子のユニバーサルジョイント-in silicoで探る細菌べん毛フックのメカニズム,2005
- Author(s)
  北尾彰朗, Fadel A.Samatey, 松波秀行, 今田勝巳, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1335-1340
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape2005
- Author(s)
  Yasumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  J.Am.Chem.Soc 127
  
  Pages: 8705-8709
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] べん毛による細菌の泳ぎ方と方向転換の分子機構2005
- Author(s)
  今田勝巳, Fadel A.Samatey, 松波秀行, 長島重広, 北尾彰朗, 米倉功治, 眞木さおり, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1328-1334
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] べん毛による細菌の泳ぎ方と方向転換の分子機構2005
- Author(s)
  今田勝巳, Fadel A. Samatey, 松波秀行, 長島重広, 北尾彰朗, 米倉功治, 眞木さおり, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1328-1334
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Universal joint mechanism of Biological Supramolecule2005
- Author(s)
  Akio Kitao, Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Keiichi Namba
- Journal Title
  
  Protein, Nucreic Acid and Enzyme 50(10)
  
  Pages: 1335-1340
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] べん毛による細菌の泳ぎ方と方向転換の分子機構2005
- Author(s)
  今田勝巳, Fadel A.Samatey, 松波秀行, 長島重広, 北尾彰朗, 米倉功治, 眞木さおり, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1328-1334
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 生体超分子のユニバーサルジョイント-in silicoで探る細菌べん毛フックのメカニズム2005
- Author(s)
  北尾彰朗, Fadel A.Samatey, 松波秀行, 今田勝巳, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1335-1340
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] 蛋白質の効率的機能を支えるメカニズム2005
- Author(s)
  城地保昌, 北尾彰朗
- Journal Title
  
  蛋白質核酸酵素 51(8)
  
  Pages: 972-978
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 生体超分子のユニバーサルジョイント-in silicoで探る細菌べん毛フックのメカニズム2005
- Author(s)
  北尾彰朗, Fadel A.Samatey, 松波秀行, 今田勝巳, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1335-1340
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 生体超分子のユニバーサルジョイント-in silicoで探る細菌べん毛フックのメカニズム2005
- Author(s)
  北尾彰朗, Fadel A. Samatey, 松波秀行, 今田勝巳, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1335-1340
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Protein Boson Peak Originated from Hydration-RelatedMultiple Minima Energy Landscape2005
- Author(s)
  Yasumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  J.Am.Chem.Soc 127
  
  Pages: 8705-8709
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] 生体超分子のユニバーサルジョイント.In silicoで探る細菌べん毛フックのメカニズム2005
- Author(s)
  北尾彰朗
- Journal Title
  
  蛋白質核酸酵素 50
  
  Pages: 1335-1340
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape2005
- Author(s)
  asumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  J. Am. Chem. Soc 127
  
  Pages: 8705-8709
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Protein Boson Peak Originated from Hydration-Related Multiple Minima Energy Landscape2005
- Author(s)
  Yasumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  J.Am.Chem.Soc 127
  
  Pages: 8705-8709
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] べん毛による細菌の泳ぎ方と方向転換の分子機構2005
- Author(s)
  今田勝巳, Fadel A.Samatey, 松波秀行, 長島重広, 北尾彰朗, 米倉功治, 眞木さおり, 難波啓一
- Journal Title
  
  蛋白質核酸酵素 50(10)
  
  Pages: 1328-1334
- Data Source
  KAKENHI-PROJECT-16041208
[Journal Article] Molecular simulation study to examine the possibility of detecting collective motion in protein by inelastic neutron scattering2004
- Author(s)
  Y.Joti, A.Kitao, N.Go
- Journal Title
  
  Physica B 350
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism2004
- Author(s)
  Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Shigehiro Nagashima, Tanvir R.Shaikh, Dennis R.Thomas, James Z.Chen, David J.De Rosier, Akio Kitao, Keiichi Namba
- Journal Title
  
  Nature 431
  
  Pages: 1062-1068
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism2004
- Author(s)
  TR Shaikh, DR Thomas, JZ Chen, DJ De Rosier, A Kitao, K Namba
- Journal Title
  
  Nature 431
  
  Pages: 1062-1068
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] Molecular simulation study to examine the possibility of detecting collective motion in protein by inelastic neutron scattering2004
- Author(s)
  Yasumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  Physica B 350
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Slow Protein Dynamics to be detected in Inelastic Neutron Scattering Spectra Studied by Molecular Simulations", Proceedings of 3rd International Symposium on Slow Dynamics in Complex Systems2004
- Author(s)
  Yasumasa Joti, Akio Kitao, Nobuhiro Go
- Journal Title
  
  edited by M. Tokuyama & I. Oppenheim
  
  Pages: 358-359
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism2004
- Author(s)
  Fadel A. Samatey, Hideyuki Matsunami, Katsumi Imada, Shigehiro Nagashima, Tanvir R. Shaikh, Dennis R. Thomas, James Z. Chen, David J. De Rosier, Akio Kitao, Keiichi Namba
- Journal Title
  
  Nature 431
  
  Pages: 1062-1068
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087202
[Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism2004
- Author(s)
  Fadel A.Samatey, Hideyuki Matsunami, Katsumi Imada, Shigehiro Nagashima, Tanvir R.Shaikh, Dennis R.Thomas, James Z.Chen, David J.De Rosier, Akio Kitao, Keiichi Namba
- Journal Title
  
  NATURE 431
  
  Pages: 1062-1068
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15300103
[Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.2004
- Author(s)
  Samatey, F.A., Matsunami, H., Imada, K., Nagashima, S., Shaikh, T.R., Thomas, D., Chen, J.Z., DeRosier, D.J., Kitao, A., *Namba K.
- Journal Title
  
  Nature 431
  
  Pages: 1062-1068
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16087101
[Journal Article] The Effects of solvent and anharmonicity on incoherent inelastic neutron scattering spectra of proteins2002
- Author(s)
  Kitao A
- Journal Title
  
  Journal of Neutron Research 10
  
  Pages: 143-147
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-13208010
[Journal Article] The Effects of solvent and anharmonicity on incoherent inelastic neutron scattering spectra of proteins2002
- Author(s)
  Kitao A.
- Journal Title
  
  Journal of Neutron Research 10
  
  Pages: 143-147
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-13208010
[Presentation] 高圧力下でのバクテリア運動観察2019
- Author(s)
  畑宏明，西原泰孝，西山雅祥，曽和義幸，川岸郁朗，北尾彰朗
- Organizer
  2018年度べん毛研究交流会
- Data Source
  KAKENHI-PROJECT-17KT0026
[Presentation] Simulating dissociation and association processes of protein complexes2019
- Author(s)
  北尾彰朗
- Organizer
  TSRC workshop on ‘The Role of Fluctuations and Dynamics in Biomolecular Function’
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] PaCS-MDによるタンパク質のダイナミクスと離合集散2018
- Author(s)
  北尾彰朗
- Organizer
  物性研究所スパコン共同利用・CCMS合同研究会「計算物質科学の今と未来」
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] PaCS-MDによるタンパク質のダイナミクスと離合集散2018
- Author(s)
  北尾彰朗
- Organizer
  物性研究所スパコン共同利用・CCMS合同研究会「計算物質科学の今と未来」
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Na+駆動型べん毛モーターPomA/PomBのThr残基のイオン透過における役割：MDシミュレーション結果2018
- Author(s)
  尾上靖宏、岩城雅代、信夫愛、西原泰孝、岩月哲人、寺島浩行、北尾彰朗、神取秀樹、本間道夫
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] カスケード型超並列シミュレーションで見るタンパク質間結合の圧力依存性2018
- Author(s)
  畑宏明，西原泰孝，西山雅祥，川岸郁朗，北尾彰朗
- Organizer
  第18回蛋白質科学会
- Data Source
  KAKENHI-PROJECT-17KT0026
[Presentation] Na+駆動型べん毛モーターPomA/PomBのThr残基のイオン透過における役割MDシミュレーション結果2018
- Author(s)
  尾上靖宏，岩城雅代，信夫愛、西原泰孝、岩月哲人、寺島浩行、北尾彰朗、神取秀樹、本間道夫
- Organizer
  2017年度べん毛研究交流会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] カスケード型超並列シミュレーションでみるCheY－FliM複合体解離に対する圧力の影響2018
- Author(s)
  畑宏明, 西原泰孝, 西山雅祥, 川岸郁朗, 北尾彰朗
- Organizer
  2017年度べん毛研究交流会（第23回）
- Data Source
  KAKENHI-PROJECT-17KT0026
[Presentation] Refining binding free energies of docked protein-protein complexes by sampling conformations during molecular dynamics simulations2018
- Author(s)
  信夫愛、竹村和浩、北尾彰朗
- Organizer
  第18回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] カスケード型超並列シミュレーションでみるCheY-FliM複合体解離に対する圧力の影響2018
- Author(s)
  畑宏明、北尾彰朗
- Organizer
  2017年度べん毛研究交流会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] ColDock : 高濃度リガンド条件での全原子 MD シミュレーョンを用いた蛋白質－リガンド複合体構造の効率的な探索手法2018
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第18回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Investigate protein complex formation and dissociation in silico2018
- Author(s)
  北尾彰朗
- Organizer
  WRHI International Workshop on Advanced Laser Spectroscopy for Soft Molecular Systems
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] ColDock: Concentrated ligand Docking method for an efficient protein-ligand complex structure prediction using all-atom MD2018
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] カスケード型超並列シミュレーションで見るタンパク質間結合の圧力依存性2018
- Author(s)
  畑宏明、西原泰孝、西山雅祥、川岸郁朗、北尾彰朗
- Organizer
  第18回日本蛋白質科学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Differences and similarities in (6-4) Photolyase DNA repair pathways2018
- Author(s)
  Dokainish Hisham, Yamada Daichi, Kandori Hideki, Kitao Akio
- Organizer
  第56回日本生物物理学会年会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Computational approach to investigate protein complex formation and dissociation2018
- Author(s)
  北尾彰朗
- Organizer
  14th Rencontres du Vietnam Computational Biophysics at the Molecular and Mesoscales
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Investigating dissociation and association mechanisms of protein complexes2018
- Author(s)
  北尾彰朗
- Organizer
  The 2nd workshop on ‘Advances in Theory and Computation of Complex Systems --- Biological Systems
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] MD シミュレーションを用いた構造サンプリングによるドッキングタンパク質ータンパク質複合体結合自由エネルギー評価の精密化2017
- Author(s)
  信夫愛, 竹村和浩, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Protein-peptide dissociation at high pressure studied by parallel cascade selection molecular dynamics simulations2017
- Author(s)
  畑宏明, 西原泰孝, 西山雅祥, 川郁朗, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Refining binding free energies of docked protein-protein complexes by sampling conformations during molecular dynamics simulations2017
- Author(s)
  Ai Shinobu Kazuhiro Takemura Akio Kitao
- Organizer
  第56回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Refining binding free energies of docked complexes by sampling configurations during molecular　dynamics simulations2017
- Author(s)
  Ai Shinobu Kazuhiro Takemura Akio Kitao
- Organizer
  Conformational Ensembles from Experimental Data and Computer Simulations
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 分子シミュレーションによる細菌べん毛モーターの分子機構2017
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第72回年次大会
- Place of Presentation
  大阪大学豊中キャンパス（大阪市豊中市）
- Year and Date
  2017-03-17
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] MD シミュレーションを用いた構造サンプリングによるドッキングタンパク質ータンパク質複合体結合自由エネルギー評価の精密化2017
- Author(s)
  信夫愛, 竹村和浩, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Protein-protein complex structure prediction using the solution theory in the energy representation2017
- Author(s)
  竹村和浩, 松林伸幸, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Protein-protein complex structure prediction using the solution theory in the energy representation2017
- Author(s)
  竹村和浩, 松林伸幸, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Dynamic structure of bacterial flagellar proteins observed in silico2017
- Author(s)
  Akio Kitao
- Organizer
  Bacterial Flagella, Injectisome and Type III Secretion Systems
- Place of Presentation
  沖縄科学技術大学院大学（沖縄県恩納村）
- Year and Date
  2017-03-01
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Improvement of PaCS-MD based Flexible Docking Methods2017
- Author(s)
  Phuoc Duy Tran and Akio Kitao
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Dynamic structure of bacterial flagellar proteins observed in silico2017
- Author(s)
  Akio Kitao
- Organizer
  Bacterial Flagella, Injectisome and Type III Secretion Systems
- Place of Presentation
  沖縄科学技術大学院大学（沖縄県恩納村）
- Year and Date
  2017-03-01
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Dissociation and Association Dynamics of Proteins2017
- Author(s)
  Akio Kitao
- Organizer
  TSCR Workshop on Protein Dynamics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 分子シミュレーションによる細菌べん毛モーターの分子機構2017
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第72回年次大会
- Place of Presentation
  大阪大学豊中キャンパス（大阪市豊中市）
- Year and Date
  2017-03-17
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Electron fate and mutational robustness in the mechanism of (6-4) photolyase-mediated DNA repair2017
- Author(s)
  Hisham M. Dokainish, Daichi Yamada, Tatsuya Iwata, Hideki Kandori and Akio Kitao
- Organizer
  5th AWEST 2017 the 5th Awaji International Workshop on “Electron Spin Science & Technology: Biological and Materials Science Oriented Applications”
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] 実験と計算によるp53 の標的DNA 配列探索機能（１）2017
- Author(s)
  北尾彰朗
- Organizer
  日本化学会第９７春季年会
- Place of Presentation
  慶應義塾大学日吉キャンパス（神奈川県横浜市）
- Year and Date
  2017-03-16
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Improvement of PaCS-MD based Flexible Docking Methods2017
- Author(s)
  Phuoc Duy Tran and Akio Kitao
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] 生体高分子の離合集散ダイナミクス2017
- Author(s)
  北尾彰朗
- Organizer
  第66回高分子討論会
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Protein-peptide dissociation at high pressure studied by parallel cascade selection molecular dynamics simulations2017
- Author(s)
  H. Hata, Y. Nishihara, M. Nishiyama, I. Kawagishi, A. Kitao
- Organizer
  日本生物物理学会第55回年会
- Data Source
  KAKENHI-PROJECT-17KT0026
[Presentation] ＰａＣＳ-ＭＤでみる蛋白質の柔らかさ・離合集散と機能2017
- Author(s)
  北尾彰朗
- Organizer
  第17回日本蛋白質科学会年会
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Electron fate and mutational robustness in the mechanism of (6-4) photolyase-mediated DNA repair2017
- Author(s)
  Hisham M. Dokainish, Daichi Yamada, Tatsuya Iwata, Hideki Kandori and Akio Kitao
- Organizer
  5th AWEST 2017 the 5th Awaji International Workshop on “Electron Spin Science & Technology: Biological and Materials Science Oriented Applications”
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] ＰａＣＳ-ＭＤでみる蛋白質の柔らかさ・離合集散と機能2017
- Author(s)
  北尾彰朗
- Organizer
  第17回日本蛋白質科学会年会
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 生体高分子の離合集散ダイナミクス2017
- Author(s)
  北尾彰朗
- Organizer
  第66回高分子討論会
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 実験と計算によるp53 の標的DNA 配列探索機能（１）2017
- Author(s)
  北尾彰朗
- Organizer
  日本化学会第９７春季年会
- Place of Presentation
  慶應義塾大学日吉キャンパス(神奈川県横浜市)
- Year and Date
  2017-03-16
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Electron fate and mutational robustness in the mechanism of (6-4) photolyase-mediated DNA repair2017
- Author(s)
  Dokainish Hisham M.、Yamada Daichi、Iwata Tatsuya、Kandori Hideki、Kitao Akio
- Organizer
  WATOC2017-World Association of Theoretical and Computational Chemists
- Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Protein-peptide dissociation at high pressure studied by parallel cascade selection molecular dynamics simulations2017
- Author(s)
  畑宏明, 西原泰孝, 西山雅祥, 川岸郁朗, 北尾彰朗
- Organizer
  第55回日本生物物理学会
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Dissociation and Association Dynamics of Proteins2017
- Author(s)
  Akio Kitao
- Organizer
  TSRC Workshop on Protein Dynamics
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Simulating biomolecular interactions and functions2016
- Author(s)
  Akio Kitao
- Organizer
  1st International Symposium on Research and Education of Computational Science (RECS)
- Place of Presentation
  東京大学小柴ホール（東京都文京区）
- Year and Date
  2016-11-29
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Parallel cascade selection molecular dynamics for efficient conformational sampling of biomolecular systems2016
- Author(s)
  Akio Kitao
- Organizer
  International Conference on Molecular Simulation 2016
- Place of Presentation
  上海交通大学（中国上海市）
- Year and Date
  2016-10-23
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] DNA光回復酵素の機能発現メカニズム2016
- Author(s)
  北尾彰朗、神取秀樹
- Organizer
  「柔らかな分子系」第４回公開シンポジウム
- Place of Presentation
  名古屋工業大学（愛知県名古屋市）
- Year and Date
  2016-10-27
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Simulating biomolecular interactions and functions2016
- Author(s)
  Akio Kitao
- Organizer
  1st International Symposium on Research and Education of Computational Science (RECS)
- Place of Presentation
  東京大学小柴ホール（東京都文京区）
- Year and Date
  2016-11-29
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] タンパク質との相互作用による脂質膜の構造変化ダイナミクス2016
- Author(s)
  北尾彰朗
- Organizer
  第89回日本生化学会大会
- Place of Presentation
  仙台国際センター（宮城県仙台市）
- Year and Date
  2016-09-25
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] タンパク質との相互作用による脂質膜の構造変化ダイナミクス2016
- Author(s)
  北尾彰朗
- Organizer
  第89回日本生化学会大会
- Place of Presentation
  仙台国際センター（宮城県仙台市）
- Year and Date
  2016-09-25
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] DNA光回復酵素の機能発現メカニズム2016
- Author(s)
  北尾彰朗、神取秀樹
- Organizer
  「柔らかな分子系」第４回公開シンポジウム
- Place of Presentation
  名古屋工業大学（愛知県名古屋市）
- Year and Date
  2016-10-27
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Parallel cascade selection molecular dynamics for efficient conformational sampling of biomolecular systems2016
- Author(s)
  Akio Kitao
- Organizer
  International Conference on Molecular Simulation 2016
- Place of Presentation
  上海交通大学（中国上海市）
- Year and Date
  2016-10-23
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Structure, dynamics, and function of bacterial flagella investigated by molecular dynamics simulation2015
- Author(s)
  Akio Kitao
- Organizer
  The International Chemical Congress of Pacific Basin Societies 2015
- Place of Presentation
  Honolulu, HI, USA
- Year and Date
  2015-12-15
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Dynamics and Function of Bacterial Flagella Investigated by Molecular Simulation2015
- Author(s)
  Akio Kitao
- Organizer
  The 20th Biophysics Conference
- Place of Presentation
  Academia Sinica, 台北、台湾
- Year and Date
  2015-05-12
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Structure, dynamics, and function of bacterial flagella investigated by molecular dynamics simulation2015
- Author(s)
  Akio Kitao
- Organizer
  The International Chemical Congress of Pacific Basin Societies 2015
- Place of Presentation
  Honolulu, HI, USA
- Year and Date
  2015-12-15
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Solvation effects on protein interaction with other molecules2015
- Author(s)
  Akio Kitao
- Organizer
  Symposium of 53rd Annual Meeting of the Biophysical Society of Japan
- Place of Presentation
  金沢大学角間キャンパス（石川県・金沢市）
- Year and Date
  2015-09-13
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Dynamics and Function of Bacterial Flagella Investigated by Molecular Simulation2015
- Author(s)
  Akio Kitao
- Organizer
  The 20th Biophysics Conference
- Place of Presentation
  Academia Sinica, 台北、台湾
- Year and Date
  2015-05-12
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Parallel Cascade Selection Molecular Dynamics (PaCS-MD) to explore conformational spaces of proteins efficiently2015
- Author(s)
  Akio Kitao
- Organizer
  Workshop on Kinetics of Enzymes and Molecular Machines
- Place of Presentation
  Beijing, China
- Year and Date
  2015-08-18
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Proton permeation mechanisms in the stator of bacterial flagellar motor2015
- Author(s)
  Akio Kitao
- Organizer
  Telluride Research Center Workshop on Protein Dynamics
- Place of Presentation
  Telluride, CO, USA
- Year and Date
  2015-08-03
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Solvation effects on protein interaction with other molecules2015
- Author(s)
  Akio Kitao
- Organizer
  Symposium of 53rd Annual Meeting of the Biophysical Society of Japan
- Place of Presentation
  金沢大学角間キャンパス（石川県・金沢市）
- Year and Date
  2015-09-13
- Invited
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] Parallel Cascade Selection Molecular Dynamics (PaCS-MD) to explore conformational spaces of proteins efficiently2015
- Author(s)
  Akio Kitao
- Organizer
  Workshop on Kinetics of Enzymes and Molecular Machines
- Place of Presentation
  Beijing, China
- Year and Date
  2015-08-18
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Proton permeation mechanisms in the stator of bacterial flagellar motor2015
- Author(s)
  Akio Kitao
- Organizer
  Telluride Research Center Workshop on Protein Dynamics
- Place of Presentation
  Telluride, CO, USA
- Year and Date
  2015-08-03
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15H04357
[Presentation] 柔らかさを利用したタンパク質とその集合体の機能制御2014
- Author(s)
  北尾彰朗
- Organizer
  日本化学会　第94春季年会　シンポジウム
- Place of Presentation
  愛知県名古屋市/名古屋大学東山キャンパス
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Molecular simulation of proteins: Pressure tolerance of deep-sea fish actin and membrane deformation induced by I-BAR domain2014
- Author(s)
  Akio Kitao
- Organizer
  1st SPIRITS Workshop“Manipulation of Integrated Molecular Reaction Processes in living cell
- Place of Presentation
  Kyoto/Campus Plaza Kyoto
- Year and Date
  2014-09-02
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Molecular simulation of proteins: Pressure tolerance of deep-sea fish actin and membrane deformation induced by I-BAR domain2014
- Author(s)
  Akio Kitao
- Organizer
  1st SPIRITS Workshop“Manipulation of Integrated Molecular Reaction Processes in living cell
- Place of Presentation
  Kyoto/Campus Plaza Kyoto
- Year and Date
  2014-09-02
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] バイオ分子が働く様子をコンピュータでみてみよう2014
- Author(s)
  北尾彰朗
- Organizer
  化学への招待－講演会；コンピュータ化学で物質の振舞いや生命現象を「見る」
- Place of Presentation
  東京都目黒区/東大生産技術研究所コンベンションホール
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 柔らかさを利用したタンパク質とその集合体の機能制御2014
- Author(s)
  北尾彰朗
- Organizer
  日本化学会　第94春季年会　シンポジウム
- Place of Presentation
  愛知県名古屋市/名古屋大学東山キャンパス
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] バイオ分子が働く様子をコンピュータでみてみよう2014
- Author(s)
  北尾彰朗
- Organizer
  化学への招待－講演会；コンピュータ化学で物質の振舞いや生命現象を「見る」
- Place of Presentation
  東京都目黒区/東大生産技術研究所コンベンションホール
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] How Can Soft Molecular Machinery Be Well-Regulated? Structure and Function of Bacterial Flagella2013
- Author(s)
  Akio Kitao
- Organizer
  第15回日韓分子科学シンポジウム
- Place of Presentation
  兵庫県神戸市/ホテル北野プラザ六甲荘
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Structure modeling of the stator in bacterial flagellar motor and implication for selective permeation mechanism of proton2013
- Author(s)
  北尾彰朗
- Organizer
  JSPS二国間交流事業第4回日仏セミナー『細胞内の時間・空間階層構造のイメージング－分子から細胞に至るダイナミクス俯瞰－』
- Place of Presentation
  Spring8 及びSACLA　（兵庫県）
- Year and Date
  2013-01-07
- Invited
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 細菌べん毛モーター固定子複合体MotA/Bへのイオン透過機構2013
- Author(s)
  西原泰孝，北尾彰朗
- Organizer
  2012年度べん毛交流会
- Place of Presentation
  喜びの宿しん喜　（群馬県）
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 蛋白質構造ダイナミクスと機能の関係を探るより効率的な分子シミュレーション2013
- Author(s)
  北尾彰朗
- Organizer
  第13回日本蛋白質科学会年会
- Place of Presentation
  鳥取県鳥取市/とりぎん文化会館
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 分子シミュレーションによる大腸菌べん毛モーター固定子MotA/Bの立体構造モデリングとプロトン透過メカニズム2013
- Author(s)
  北尾彰朗
- Organizer
  第3回分子モーター討論会
- Place of Presentation
  東京都文京区/東京大学フードサイエンス棟中島董一郎記念ホール
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Structure modeling of the stator in bacterial flagellar motor and implication for selective permeation mechanism of proton2013
- Author(s)
  北尾彰朗
- Organizer
  JSPS二国間交流事業第4回日仏セミナー『細胞内の時間・空間階層構造のイメージング－分子から細胞に至るダイナミクス俯瞰－』
- Place of Presentation
  Spring8 及びSACLA　（兵庫県）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Exploring protein conformational transition pathways with efficient molecular simulation method2013
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Protein Dynamics Workshop on Protein Dynamics
- Place of Presentation
  Telluride, CO, USA
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 集団座標による分子シミュレーションの解析2013
- Author(s)
  北尾彰朗
- Organizer
  第7回分子シミュレーションスクール」「TCCIウィンターカレッジ」
- Place of Presentation
  愛知県岡崎市/岡崎コンファレンスセンター
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 分子シミュレーションによる大腸菌べん毛モーター固定子MotA/Bの立体構造モデリングとプロトン透過メカニズム2013
- Author(s)
  北尾彰朗
- Organizer
  第3回分子モーター討論会
- Place of Presentation
  東京都文京区/東京大学フードサイエンス棟中島董一郎記念ホール
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 巨大生体超分子の構造転移制御メカニズム2013
- Author(s)
  北尾彰朗
- Organizer
  HPCI戦略プログラム分野1×分野2 シンポジウムin 名大「生体分子複合システムを計算する－相互作用は何をもたらすのか－」
- Place of Presentation
  愛知県名古屋市/名古屋大学IB電子情報館
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 集団座標による分子シミュレーションの解析2013
- Author(s)
  北尾彰朗
- Organizer
  第7回分子シミュレーションスクール」「TCCIウィンターカレッジ」
- Place of Presentation
  愛知県岡崎市/岡崎コンファレンスセンター
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Exploring protein conformational transition pathways with efficient molecular simulation method2013
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Protein Dynamics Workshop on Protein Dynamics
- Place of Presentation
  Telluride, CO, USA
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] How Can Soft Molecular Machinery Be Well-Regulated? Structure and Function of Bacterial Flagella2013
- Author(s)
  Akio Kitao
- Organizer
  第15回日韓分子科学シンポジウム
- Place of Presentation
  兵庫県神戸市/ホテル北野プラザ六甲荘
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 巨大生体超分子の構造転移制御メカニズム2013
- Author(s)
  北尾彰朗
- Organizer
  HPCI戦略プログラム分野1×分野2 シンポジウムin 名大「生体分子複合システムを計算する－相互作用は何をもたらすのか－」
- Place of Presentation
  愛知県名古屋市/名古屋大学IB電子情報館
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 水とタンパク質の構造揺らぎの理論解析2012
- Author(s)
  北尾彰朗
- Organizer
  新学術合同交際シンポジウム「ゆらぎと水―生命のエネルギーと機能の分子機構を探る
- Place of Presentation
  大阪ガーデンパレス　（大阪府）
- Year and Date
  2012-09-14
- Invited
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] タンパク質ソフトモードのサンプリングと相関解析2012
- Author(s)
  北尾彰朗
- Organizer
  研究会「高次元のサンプリングとデータ解析からみたシミュレーション科学」
- Place of Presentation
  東京都立川市/統計数理研究所(招待講演)
- Year and Date
  2012-03-07
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] タンパク質ソフトモードのサンプリングと相関解析2012
- Author(s)
  北尾彰朗
- Organizer
  研究会「高次元のサンプリングとデータ解析からみたシミュレーション科学」
- Place of Presentation
  統計数理研究所　（東京都）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Finding Function-relevant Dynamics in Proteins2012
- Author(s)
  北尾彰朗
- Organizer
  揺らぎと生体機能・第5回公開シンポジウム
- Place of Presentation
  奈良県奈良市/東大寺総合文化センター(招待講演)(at1/8)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Water Model Tuning toward Better Reproduction of Rotational Diffusion and NMR Spectral Density2012
- Author(s)
  竹村和浩, 北尾彰朗
- Organizer
  揺らぎと生体機能・第5回公開シンポジウム
- Place of Presentation
  奈良県奈良市/東大寺総合文化センター(at1/8)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Molecular Dynamics Simulation of Protein Using Robot Dynamics Algorithm2012
- Author(s)
  山守優，竹村和浩，北尾彰朗
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋大学東山キャンパス　（愛知県）
- Year and Date
  2012-09-22
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Multi-scale modeling of protein complex structures2012
- Author(s)
  Akio Kitao
- Organizer
  Mini-Symposium on Modeling, Simulation and Function of Biomolecular Assemblies
- Place of Presentation
  東京大学伊藤国際学術センター　（東京都）
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] ウィルスT4ゲノムパッケージングモーターの分子ダイナミクス2012
- Author(s)
  竹村和浩, 北尾彰朗
- Organizer
  第2回計算物質科学イニシアティブ(CMSI)研究会
- Place of Presentation
  宮城県仙台市/東北大学・金属材料研究所・講堂(at1/30)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 細菌べん毛モーター固定子MotA/MotBの構造モデリング2012
- Author(s)
  西原泰孝, 北尾彰朗
- Organizer
  2011年度べん毛研究交流会
- Place of Presentation
  静岡県伊豆市/ラフォーレ修善寺(at3/10)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 細菌べん毛モーター固定子複合体MotA/Bチャネルの選択的透過メカニズム2012
- Author(s)
  西原泰孝，北尾彰朗
- Organizer
  第12回東京大学生命科学シンポジウム
- Place of Presentation
  東京大学山上会館　（東京都）
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 大規模分子動力学によるウィルス感染初期過程シミュレーション2012
- Author(s)
  二島渉, 金丸周司, 有坂文雄, 北尾彰朗
- Organizer
  第5回次世代ナノ統合シミュレーションソフトウェアの研究開発(ナノ統合)
- Place of Presentation
  兵庫県神戸市/ニチイ学館神戸ポートアイランドセンター(at3/5)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 細菌べん毛モーター固定子複合体MotA/B チャネルの選択的透過メカニズム2012
- Author(s)
  西原泰孝，北尾彰朗
- Organizer
  第50回日本生物物理学会年会
- Place of Presentation
  名古屋大学東山キャンパス　（愛知県）
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] ウィルスT4ゲノムパッケージングモーターの分子ダイナミクス2012
- Author(s)
  竹村和浩, 北尾彰朗
- Organizer
  第5回次世代ナノ統合シミュレーションソフトウェアの研究開発(ナノ統合)
- Place of Presentation
  兵庫県神戸市/ニチイ学館神戸ポートアイランドセンター(at3/5)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 水とタンパク質の構造揺らぎの理論解析2012
- Author(s)
  北尾彰朗
- Organizer
  新学術合同交際シンポジウム「ゆらぎと水―生命のエネルギーと機能の分子機構を探る」
- Place of Presentation
  大阪ガーデンパレス　（大阪府）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 高圧下におけるαアクチン構造安定性の理論的解析(Theoretical Analysis of alpha-Actin Stability at High Pressure)2012
- Author(s)
  若井信彦，竹村和浩，森田貴己，北尾彰朗
- Organizer
  第12回日本蛋白質科学会年会
- Place of Presentation
  名古屋国際会議場　（愛知県）
- Year and Date
  2012-06-20
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Multi-scale modeling of protein complex structures2012
- Author(s)
  Akio Kitao
- Organizer
  Mini-Symposium on Modeling, Simulation and Function of Biomolecular Assemblies
- Place of Presentation
  東京大学伊藤国際学術センター　（東京都）
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Finding Function-relevant Dynamics in Proteins2012
- Author(s)
  北尾彰朗
- Organizer
  揺らぎと生体機能・第５回公開シンポジウム
- Place of Presentation
  東大寺総合文化センター　（奈良県）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Docking study to investigate the interaction of p53 domains with Mdm2 and Azurin2011
- Author(s)
  Raghunadha Reddy Burri, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] T4ファージタンパク質gp5の脂質2重膜貫通シミューレーション2011
- Author(s)
  北尾彰朗
- Organizer
  第3回バイオスーパーコンピューティングシンポジウム
- Place of Presentation
  兵庫県神戸市/甲南大学ポートアイランドキャンパス
- Year and Date
  2011-02-22
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Expectation to detect correlated dynamics in protein2011
- Author(s)
  Akio Kitao
- Organizer
  nDDB Workshop Grenoble
- Place of Presentation
  Grenobel/France
- Year and Date
  2011-01-11
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 高圧下におけるαアクチン構造安定性の理論的解析2011
- Author(s)
  若井信彦, 竹村和浩, 森田貴己, 北尾彰朗
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  大阪府吹田市/ホテル阪急エキスポパーク(at6/7)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 生体超分子の構造変化を制御する分子メカニズム2011
- Author(s)
  北尾彰朗
- Organizer
  分子研研究会「実験と理論による高次分子システムの機能発現の分子論的理解」
- Place of Presentation
  愛知県岡崎市/岡崎コンファレンスセンター(招待講演)(at11/2)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 構造変化が生みだすタンパク質機能:理論からのアプローチ2011
- Author(s)
  北尾彰朗
- Organizer
  日本化学会第9春季年会(2011年)
- Place of Presentation
  神奈川県横浜市/神奈川大学横浜キャンパス
- Year and Date
  2011-03-27
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Solvation Free Energy of Complex : a potential tool for improving scoring function in protein-protein docking2011
- Author(s)
  竹村和浩, 郭皓, 桜庭俊, 松林伸幸, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Clustering method for rigid-body docking prediction based on complex decoy interface2011
- Author(s)
  大森聡, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(招待講演)(at9/16)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Structural modeling of the stator complex MotA/MotB in bacterial flagellar motor2011
- Author(s)
  西原泰孝, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Transform and relax sampling to enhance slow protein dynamics2011
- Author(s)
  北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 異方性の高いシステムのためのTransforn and Relax Sampling2011
- Author(s)
  北尾彰朗
- Organizer
  第66回日本物理学会年次大会(2011年)
- Place of Presentation
  新潟県新潟市/新潟大学五十嵐北キャンパス
- Year and Date
  2011-03-28
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションによるタンパク質ダイナミクスとテラヘルツ分光2011
- Author(s)
  北尾彰朗
- Organizer
  日本分光学会テラヘルツ分光部会シンポジウムテラヘルツ分光法の最先端V～バイオテラヘルツ分光～
- Place of Presentation
  神奈川県横浜市/パシフィコ横浜(招待講演)(at9/28)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Theoretical Analysis of α-Actin Stability at High Pressure2011
- Author(s)
  若井信彦, 竹村和浩, 森田貴己, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Enhancement of soft protein dynamics and efficient free energy calculation by molecular dynamics simulation2011
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Workshop on Protein Dynamics
- Place of Presentation
  USA/CO/Telluride(招待講演)(at8/1)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 細菌べん毛モーター固定子MotA/MotB複合体の分子モデリング2011
- Author(s)
  西原泰孝, 北尾彰朗
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  大阪府吹田市/ホテル阪急エキスポパーク(at6/8)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 超並列マルチスケールシミュレーションMSFELで探る生体分子の自由エネルギー地形2011
- Author(s)
  原田隆平, 北尾彰朗
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  大阪府吹田市/ホテル阪急エキスポパーク(at6/8)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 生体超分子の構造変化を制御する分子メカニズム2011
- Author(s)
  北尾彰朗
- Organizer
  分子研研究会「実験と理論による高次分子システムの機能発現の分子論的理解」
- Place of Presentation
  岡崎コンファレンスセンター　（愛知県）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 機能を生み出すタンパク質の異方的ダイナミクス2011
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会2011年秋季大会
- Place of Presentation
  富山県富山市/富山大学五福キャンパス(招待講演)(at9/23)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Transform and Relax Samplingによるタンパク質の構造変化解析2011
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会2011年秋季大会
- Place of Presentation
  富山県富山市/富山大学五福キャンパス(at9/23)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] 分子シミュレーションによるタンパク質ダイナミクスとテラヘルツ分光2011
- Author(s)
  北尾彰朗
- Organizer
  日本分光学会テラヘルツ分光部会シンポジウム　テラヘルツ分光法の最先端V ～バイオテラヘルツ分光～
- Place of Presentation
  パシフィコ横浜　（神奈川県）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 機能を生み出すタンパク質の異方的ダイナミクス2011
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会2011年秋季大会
- Place of Presentation
  富山大学五福キャンパス (富山県）
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 独立部分空間分析を用いたタンパク質運動の解析2011
- Author(s)
  桜庭俊・松林伸幸・城地保昌, 北尾彰朗
- Organizer
  次世代ナノ統合シミュレーションソフトウェアの研究開発第5回公開シンポジウム
- Place of Presentation
  甲南大学、神戸市
- Year and Date
  2011-02-23
- Data Source
  KAKENHI-PUBLICLY-21023006
[Presentation] ウイルスT4ファージの膜貫通メカニズム2011
- Author(s)
  二島渉, 金丸周司, 有坂文雄, 北尾彰朗
- Organizer
  計算分子科学研究拠点第2回研究会
- Place of Presentation
  兵庫県神戸市/理化学研究所計算科学研究機構(at8/12)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Enhancement of soft protein dynamics and efficient2011
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Workshop
- Place of Presentation
  Telluride　(USA)
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 溶媒和自由エネルギーを用いた蛋白質-蛋白質ドッキング複合体の評価2011
- Author(s)
  竹村和浩, Hao Guo, 桜庭俊, 松林伸幸, 北尾彰朗
- Organizer
  第11回日本蛋白質科学会年会
- Place of Presentation
  大阪府吹田市/ホテル阪急エキスポパーク(at6/8)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Molecular Dynamics Simulation of Protein Using Robot Dynamics Algorithm2011
- Author(s)
  山守優, 竹村和浩, 北尾彰朗
- Organizer
  第49回日本生物物理学会
- Place of Presentation
  兵庫県姫路市/兵庫県立大学姫路書写キャンパス(at9/18)
- Data Source
  KAKENHI-PUBLICLY-23107705
[Presentation] Detecting coupled motions in protein with Molecular dynamics simulation2010
- Author(s)
  S.Sakuraba, Y.Joti, A.Kitao
- Organizer
  新学術領域研究「揺らぎと生体機能」第4回公開シンポジウム
- Place of Presentation
  ピアザ淡海、大津市
- Year and Date
  2010-12-01
- Data Source
  KAKENHI-PUBLICLY-21023006
[Presentation] いくつかの蛋白質でのリガンド結合に伴う構造変化の詳細メカニズム2010
- Author(s)
  北尾彰朗
- Organizer
  量子生命フロンティア研究特定ユニット第8回勉強会
- Place of Presentation
  日本原子力研究機構システム計算科学センター(東京都)
- Year and Date
  2010-03-17
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] タンパク質が引き起こす生体膜変形のダイナミクス(注:シンポジウムの概略説明含む)2010
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第65回年次大会
- Place of Presentation
  岡山大学津島キャンパス(岡山県)
- Year and Date
  2010-03-20
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 大規模分子動力学によるバイオナノマシンの機能シミュレーション2010
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2010「大規模並列分子シミュレーションの最前線」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2010-01-13
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションによるテラヘルツ領域での蛋白質ダイナミクス-計算による中性子散乱・テラヘルツ分光スペクトル-2010
- Author(s)
  北尾彰朗
- Organizer
  第1回テラヘルツーバイオ研究会
- Place of Presentation
  情報通信研究機構神戸研究所未来ICT研究センター(兵庫県)
- Year and Date
  2010-02-08
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] タンパク質が引き起こす生体膜変形のダイナミクス(注:シンポジウムの概略説明含む)2010
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第65回年次大会
- Place of Presentation
  岡山大学津島キャンパス(岡山県)
- Year and Date
  2010-03-20
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] いくつかの蛋白質でのリガンド結合に伴う構造変化の詳細メカニズム2010
- Author(s)
  北尾彰朗
- Organizer
  量子生命フロンティア研究特定ユニット第8回勉強会
- Place of Presentation
  日本原子力研究機構システム計算科学センター(東京都)
- Year and Date
  2010-03-17
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 可塑性を巧緻に利用するタンパク質の構造機能制御2010
- Author(s)
  北尾彰朗
- Organizer
  第10回生命・情報セミナー
- Place of Presentation
  東京都文京区/東京大学理学部
- Year and Date
  2010-11-12
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] タンパク質が引き起こす生体膜変形のダイナミクス(注:シンポジウムの概略説明含む)2010
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第65回年次大会
- Place of Presentation
  岡山大学津島キャンパス(岡山県)
- Year and Date
  2010-03-20
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] タンパク質が引き起こす膜変形のダイナミクス2010
- Author(s)
  北尾彰朗
- Organizer
  日本物理学会第65回年次大会シンポジウム
- Place of Presentation
  岡山大学津山キャンパス
- Year and Date
  2010-03-20
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 生体超分子の立体構造変化と機能2010
- Author(s)
  北尾彰朗
- Organizer
  分野間連携プロジェクト「巨大計算の新手法の開発と分子・物質シミュレーション中核拠点の形成」第6回連携研究会及成果報告
- Place of Presentation
  分子科学研究所研究棟301(愛知県)
- Year and Date
  2010-02-15
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 分子シミュレーションによるテラヘルツ領域での蛋白質ダイナミクス-計算による中性子散乱・テラヘルツ分光スペクトル-2010
- Author(s)
  北尾彰朗
- Organizer
  第1回テラヘルツーバイオ研究会
- Place of Presentation
  情報通信研究機構神戸研究所未来ICT研究センター(兵庫県)
- Year and Date
  2010-02-08
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 大規模分子動力学によるバイオナノマシンの機能シミュレーション2010
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2010「大規模並列分子シミュレーションの最前線」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2010-01-13
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 生体超分子の立体構造変化と機能2010
- Author(s)
  北尾彰朗
- Organizer
  分野間連携プロジェクト「巨大計算の新手法の開発と分子・物質シミュレーション中核拠点の形成」第6回連携研究会及成果報告
- Place of Presentation
  分子科学研究所研究棟301(愛知県)
- Year and Date
  2010-02-15
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 大規模分子動力学によるバイオナノマシンの機能シミュレーション2010
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2010「大規模並列分子シミュレーションの最前線」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2010-01-13
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 分子シミュレーションによるテラヘルツ領域での蛋白質ダイナミクス-計算による中性子散乱・テラヘルツ分光スペクトル-2010
- Author(s)
  北尾彰朗
- Organizer
  第1回テラールレツーバイオ研究会
- Place of Presentation
  情報通信研究機構神戸研究所未来ICT研究センター(兵庫県)
- Year and Date
  2010-02-08
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 生体超分子の立体構造変化と機能2010
- Author(s)
  北尾彰朗
- Organizer
  分野間連携プロジェクト「巨大計算の新手法の開発と分子・物質シミュレーション中核拠点の形成」第6回連携研究会及成果報告
- Place of Presentation
  分子科学研究所研究棟301(愛知県)
- Year and Date
  2010-02-15
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 蛋白質界面と分子間相互作用のダイナミクス2010
- Author(s)
  北尾彰朗
- Organizer
  ワークショソプ「ソフト界面と水」
- Place of Presentation
  福岡県福岡市/九州大学箱崎キャンパス
- Year and Date
  2010-08-11
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] いくつかの蛋白質でのリガンド結合に伴う構造変化の詳細メカニズム2010
- Author(s)
  北尾彰朗
- Organizer
  量子生命フロンティア研究特定ユニット第8回勉強会
- Place of Presentation
  日本原子力研究機構システム計算科学センター(東京都)
- Year and Date
  2010-03-17
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 中性子散乱と分子シミュレーションによる蛋白質の立体構造ダイナミクス-現状と今後への期待-2009
- Author(s)
  北尾彰朗
- Organizer
  JSNS2009-中性子科学会/第9回年会
- Place of Presentation
  いばらき量子ビーム研究センター(茨城県)
- Year and Date
  2009-12-09
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] タンパク質ダイナミクスと機能における水和の役割2009
- Author(s)
  北尾彰朗
- Organizer
  理研シンポジウム「動的水和構造と分子過程研究会III」
- Place of Presentation
  理化学研究所Spring8上坪講堂(兵庫県)
- Year and Date
  2009-11-25
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Motional correlation in protein dynamics2009
- Author(s)
  北尾彰朗
- Organizer
  Telluride Science Research Center Workshop on Protein Dynamics
- Place of Presentation
  Telluride/CO(USA)
- Year and Date
  2009-08-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 大規模分子シミュレーションの現状と細菌べん毛系の機能研究2009
- Author(s)
  北尾彰朗
- Organizer
  連続研究会「イオンチャンネル」
- Place of Presentation
  岡崎コンファレンスセンター / 愛知県岡崎市
- Year and Date
  2009-02-17
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] タンパク質ダイナミクスと機能における水和の役割2009
- Author(s)
  北尾彰朗
- Organizer
  理研シンポジウム「動的水和構造と分子過程研究会III」
- Place of Presentation
  理化学研究所 Spring8 上坪講堂(兵庫県)
- Year and Date
  2009-11-25
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Seeing is believing : コンピューターでみてわかるバイオ分子2009
- Author(s)
  北尾彰朗
- Organizer
  夏の学校2009「日本バイオインフォマティクス学会」
- Place of Presentation
  時の栖(静周県)
- Year and Date
  2009-09-13
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Seeing is believing:コンピューターでみてわかるバイオ分子2009
- Author(s)
  北尾彰朗
- Organizer
  夏の学校2009「日本バイオインフォマティクス学会」
- Place of Presentation
  時の栖(静岡県)
- Year and Date
  2009-09-13
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 生体超分子機能解明のための大規模分子シミュレーション2009
- Author(s)
  北尾彰朗
- Organizer
  生体超分子の構造形成と機能制御の原子機構第6回公開シンポジウム
- Place of Presentation
  千里ライフサイエンスセンター(大阪府)
- Year and Date
  2009-12-01
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Characterization of the effects of large main-chain dihedral changes in proteins2009
- Author(s)
  Kitao, Akio
- Organizer
  Korea-Japan Seminars on Biomolecular Sciences-Experi ments and Simulations
- Place of Presentation
  KIAS / KOREA. Soul
- Year and Date
  2009-02-28
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 中性子散乱と分子シミュレーションによる蛋白質の立体構造ダイナミクス-現状と今後への期待-2009
- Author(s)
  北尾彰朗
- Organizer
  JSNS2009-中性子科学会/第9回年会
- Place of Presentation
  いばらき量子ビーム研究センター(茨城県)
- Year and Date
  2009-12-09
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 生体超分子機能解明のための大規模分子シミュレーション2009
- Author(s)
  北尾彰朗
- Organizer
  生体超分子の構造形成と機能制御の原子機構第6回公開シンポジウム
- Place of Presentation
  千里ライフサイエンスセンター(大阪府)
- Year and Date
  2009-12-01
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Motional correlation in protein dynamics2009
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Workshop on Protein Dynamics
- Place of Presentation
  Telluride/CO (USA)
- Year and Date
  2009-08-05
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] バイオ分子間相互作用形態の階層的モデリング2009
- Author(s)
  北尾彰朗
- Organizer
  JST-CREST「マルチスケール・マルチフィジックス現象の統合シミュレーション」研究領域平成21年度公開シンポジウム
- Place of Presentation
  東洋大学(東京都)
- Year and Date
  2009-11-12
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 中性子散乱と分子シミュレーションによる蛋白質の立体構造ダイナミクス-現状と今後への期待-2009
- Author(s)
  北尾彰朗
- Organizer
  JSNS2009-中性子科学会/第9回年会
- Place of Presentation
  いばらき量子ビーム研究センター(茨城県)
- Year and Date
  2009-12-09
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Seeing is believing:コンピューターでみてわかるバイオ分子2009
- Author(s)
  北尾彰朗
- Organizer
  夏の学校2009「日本バイオインフォマティクス学会」
- Place of Presentation
  時の栖(静岡県)
- Year and Date
  2009-09-13
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] Motional correlation in protein dynamics2009
- Author(s)
  Akio Kitao
- Organizer
  Telluride Science Research Center Workshop on Protein Dynamics
- Place of Presentation
  Telluride/CO(USA)
- Year and Date
  2009-08-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションで探るバイオの世界:蛋白質から生体超分子まで2009
- Author(s)
  北尾彰朗
- Organizer
  公開セミナー「第19回バイオインフォマティクスーの招待」
- Place of Presentation
  お茶の水女子大学理学部 2号館(東京都)
- Year and Date
  2009-06-25
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] バイオ分子間相互作用形態の階層的モデリング2009
- Author(s)
  北尾彰朗
- Organizer
  JST-CREST「マルチスケール・マルチフィジックス現象の統合シミュレーション」研究領域平成21年度公開シンポジウム
- Place of Presentation
  東洋大学(東京都)
- Year and Date
  2009-11-12
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 大規模分子シミュレーションの現状と細菌べん毛系の機能研究2009
- Author(s)
  北尾彰朗
- Organizer
  連続研究会「イオンチャンネル」
- Place of Presentation
  岡崎コンファレンスセンター/愛知県岡崎市
- Year and Date
  2009-02-17
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 生体超分子機能解明のための大規模分子シミュレーション2009
- Author(s)
  北尾彰朗
- Organizer
  生体超分子の構造形成と機能制御の原子機構第6回公開シンポジウム
- Place of Presentation
  千里ライフサイエンスセンター(大阪府)
- Year and Date
  2009-12-01
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] Characterization of the effects of large main-chain dihedral changes in proteins2009
- Author(s)
  Kitao, Akio
- Organizer
  Korea-Japan Seminars on Biomolecular Sciences-Experi ments and Simulations
- Place of Presentation
  KIAS / KOREA, Soul
- Year and Date
  2009-02-28
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Multi-scale dynamics of protein complex formation2009
- Author(s)
  Akio Kitao
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  The Univ.of Tokyo ; Sanjo Conference Hall(Tokyo)
- Year and Date
  2009-07-16
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Multi-scale dynamics of protein complex formation2009
- Author(s)
  北尾彰朗
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  The Univ.of Tokyo ; Sanjo Conference Hall(Tokyo)
- Year and Date
  2009-07-16
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 集団座標による分子シミュレーションの解析2009
- Author(s)
  北尾彰朗
- Organizer
  第5回分子・物質シミュレーション中核拠点形成事業人材育成講座「第3回分子シミュレーションスクール」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] Multi-scale dynamics of protein complex formation2009
- Author(s)
  Akio Kitao
- Organizer
  International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
- Place of Presentation
  The Univ.of Tokyo ; Sanjo Conference Hall (Tokyo)
- Year and Date
  2009-07-16
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 分子シミュレーションで探るバイオの世界:蛋白質から生体超分子まで2009
- Author(s)
  北尾彰朗
- Organizer
  公開セミナー「第19回バイオインフォマティクスへの招待」
- Place of Presentation
  お茶の水女子大学理学部 2号館(東京都)
- Year and Date
  2009-06-25
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションで探るバイオの世界:蛋白質から生体超分子まで2009
- Author(s)
  北尾彰朗
- Organizer
  公開セミナー「第19回バイオインフォマティクスへの招待」
- Place of Presentation
  お茶の水女子大学理学部 2号館(東京都)
- Year and Date
  2009-06-25
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] T4ファージ蛋白質gp5の脂質2重膜貫通シミュレーション2009
- Author(s)
  北尾彰朗
- Organizer
  次世代スパコン「ナノ統合拠点」連続研究会-ウイルス分子科学-
- Place of Presentation
  東京大学 / 東京都文京区
- Year and Date
  2009-01-06
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 集団座標による分子シミュレーションの解析2009
- Author(s)
  北尾彰朗
- Organizer
  第5回分子・物質シミュレーション中核拠点形成事業人材育成講座「第3回分子シミュレーションスクール」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 集団座標による分子シミュレーションの解析2009
- Author(s)
  北尾彰朗
- Organizer
  第5回分子・物質シミュレーション中核拠点形成事業人材育成講座「第3回分子シミュレーションスクール」
- Place of Presentation
  岡崎コンファレンスセンター(愛知県)
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] タンパク質ダイナミクスと機能における水和の役割2009
- Author(s)
  北尾彰朗
- Organizer
  理研シンポジウム「動的水和構造と分子過程研究会III」
- Place of Presentation
  理化学研究所Spring8上坪講堂(兵庫県)
- Year and Date
  2009-11-25
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] T4ファージ蛋白質gp5の脂質2重膜貫通シミュレーション2009
- Author(s)
  北尾彰朗
- Organizer
  次世代スパコン「ナノ統合拠点」連続研究会-ウイルス分子科学-
- Place of Presentation
  東京大学/東京都文京区
- Year and Date
  2009-01-06
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] バイオ分子間相互作用形態の階層的モデリング2009
- Author(s)
  北尾彰朗
- Organizer
  JST-CREST「マルチスケール・マルチフィジックス現象の統合シミュレーション」研究領域平成21年度公開シンポジウム
- Place of Presentation
  東洋大学(東京都)
- Year and Date
  2009-11-12
- Data Source
  KAKENHI-PROJECT-16087101
[Presentation] 分子シミュレーションと溶液散乱で探る蛋白質の立体構造変化2008
- Author(s)
  城地保昌, 北尾彰朗
- Organizer
  次世代ナノ統合シミュレーションソフトウェアの研究開発第2回公開シンポジウム
- Place of Presentation
  岡崎カンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-18031006
[Presentation] 【ポスター】バクテリオファージT4の感染初期過程2008
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】マルコフ遷移行列から決定する生体分子の自由エネルギー面2008
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  日本物理学会2008春季大会
- Place of Presentation
  大阪府東大阪市近畿大学
- Year and Date
  2008-03-23
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】分子シミュレーションと溶液散乱で探る蛋白質の立体構造変化2008
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Molecular Mechanisms That Control Structure of Flexible Bio-nanomachines2008
- Author(s)
  Kitao, Akio
- Organizer
  The 1st International Conference of the Grand Challen ge to Next-Generation Integrated Nanoscience
- Place of Presentation
  日本科学未来館 / 東京都江東区
- Year and Date
  2008-06-04
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】大規模計算機シミュレーションで探る生体超分子構造形成から分子機能まで2008
- Author(s)
  北尾彰朗
- Organizer
  ナノタク研究会;平成19年度シンポジウム「近未来ナノテクノロジ技術シーズ」
- Place of Presentation
  群馬県桐生市群馬大学工学部
- Year and Date
  2008-03-19
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】全原子モデルと粗視化モデルを組み合わせた生体高分子系のマルチスケールシミュレーション2008
- Author(s)
  原田隆平、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】マルコフ遷移行列から決定する生体分子の自由エネルギー面2008
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Hydration effects on protein dynamics studied by molecular dynamics simulation of a crystalline protein2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Organizer
  5th Open Workshop for "Chemistry of Biological Processes Created by Water and Biomolecules"
- Place of Presentation
  奈良県新公会堂
- Year and Date
  2008-01-25
- Data Source
  KAKENHI-PROJECT-18031006
[Presentation] レア・イベントとしてのタンパク質ダイナミクスと複合体形成2008
- Author(s)
  北尾彰朗
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場 / 福岡県博多市
- Year and Date
  2008-12-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】タンパク質拡散における水モデルとシミュレーションボックスサイズ2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2008大規模計算と分子のダイナミクス
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-02-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】Effects of water model and simulation box size on protein diffusional motions2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第5回「水と生体分子」公開ワークショップ
- Place of Presentation
  奈良県奈良市奈良県新公会堂
- Year and Date
  2008-01-24
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 蛋白質gp5三量体の脂質2重膜貫通シミュレーション2008
- Author(s)
  北尾彰朗
- Organizer
  特定領域研究「生体超分子の構造形成と機能制御の原子機構」第4回ワークショップ
- Place of Presentation
  淡路夢舞台国際会議場/兵庫県淡路市
- Year and Date
  2008-06-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 蛋白質gp5三量体の脂質2重膜貫通シミュレーション2008
- Author(s)
  北尾彰朗
- Organizer
  特定領域研究「生体超分子の構造形成と機能制御の原子機構」第4回ワークショップ
- Place of Presentation
  淡路夢舞台国際会議場/兵庫県淡路市
- Year and Date
  2008-06-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】大規模分子動力学シミュレーションで探るべん毛繊維とフックの構造多型2008
- Author(s)
  北尾彰朗
- Organizer
  2008べん毛研究交流会ICORP超分子ナノマシンプロジェクト終了報告会
- Place of Presentation
  京都府京都市関西セミナーハウス
- Year and Date
  2008-03-04
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Effect of hydration, temperature and pressure on protein dynamics2008
- Author(s)
  Kitao, Akio
- Organizer
  5th International HPBB 2008
- Place of Presentation
  Scripps Inst.of Oceanography / California, USA
- Year and Date
  2008-09-15
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】分子シミュレーションで探る生体高分子系のダイナミクス2008
- Author(s)
  北尾彰朗
- Organizer
  応用物理学関係連合講演会
- Place of Presentation
  千葉県船橋市日本大学理工学部
- Year and Date
  2008-03-27
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】タンパク質拡散運動における水モデルとシミュレーションボックスサイズの影響2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-04
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】タンパク質拡散運動における水モデルとシミュレーションボックスサイズの影響2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-04
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【口頭】生体超分子の立体構造変化と機能2008
- Author(s)
  北尾彰朗
- Organizer
  第4回連携研究会;分野間連携プロジェクト「巨大計算新手法の開発と分子・物質シミュレーション中核拠点の形成
- Place of Presentation
  愛知県岡崎市自然科学研究機構
- Year and Date
  2008-02-13
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Effect of hydration, temperature and pressure on protein dynamics2008
- Author(s)
  Kitao, Akio
- Organizer
  5^<th> International HPBB 2008
- Place of Presentation
  Scripps Inst.of Oceanography/ California, USA
- Year and Date
  2008-09-15
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】マルコフ遷移行列から決定する生体分子の自由エネルギー面2008
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  日本物理学会2008春季大会
- Place of Presentation
  大阪府東大阪市近畿大学
- Year and Date
  2008-03-23
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】Hydration effects on protein dynamics studied by moleculardynamics simulation of a crystalline2008
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  第5回「水と生体分子」公開ワークショップ
- Place of Presentation
  奈良県奈良市奈良県新公会堂
- Year and Date
  2008-01-24
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 超並列計算機に適した生体分子シミュレーション法の開発2008
- Author(s)
  北尾彰朗
- Organizer
  特定領域研究「生体超分子の構造形成と機能制御の原子機構1第5回公開シンポジウム
- Place of Presentation
  つくば国際会議場/茨城県つくば市
- Year and Date
  2008-12-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】Effects of water model and simulation box size on protein diffusional motions2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第5回「水と生体分子」公開ワークショップ
- Place of Presentation
  奈良県奈良市奈良県新公会堂
- Year and Date
  2008-01-24
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] やわらかい生体分子が形を制御する仕組み2008
- Author(s)
  北尾彰朗
- Organizer
  東大/駒場/2008年度物性セミナー
- Place of Presentation
  東京大学 / 東京都文京区
- Year and Date
  2008-05-23
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】タンパク質拡散における水モデルとシミュレーションボックスサイズ2008
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2008大規模計算と分子のダイナミクス
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-02-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】大規模計算機シミュレーションで探る生体超分子構造形成から分子機能まで2008
- Author(s)
  北尾彰朗
- Organizer
  第24回ライフサイエンス&HPC天城セミナー
- Place of Presentation
  静岡県伊豆市天城ホームステッド
- Year and Date
  2008-03-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待溝演】大規模計算機シミュレーションで探る生体超分子構造形成から分子機能まで2008
- Author(s)
  北尾彰朗
- Organizer
  第24回ライフサイエンス&HPC天城セミナー
- Place of Presentation
  静岡県伊豆市天城ホームステッド
- Year and Date
  2008-03-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】バクテリオファージT4の感染初期過程2008
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] バイオ分子間相互作用形態の階層的モデリング2008
- Author(s)
  北尾彰朗
- Organizer
  戦略的創造研究推進事業CREST平成20年度公開シンポジウム
- Place of Presentation
  東洋大学 / 東京都文京区
- Year and Date
  2008-10-20
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】Molecular Dynamics Simulations of the Periplasmic Glutamine Binding Protein2008
- Author(s)
  Hannes H. Loeffler、北尾彰朗
- Organizer
  Biomolecular Simulation 2008:frontiers of biomolecular
- Place of Presentation
  Bristrol Zoo, UK
- Year and Date
  2008-01-07
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】Molecular Dynamics Simulations of the Periplasmic Glutamine Binding Protein2008
- Author(s)
  Hannes H. Loeffler、北尾彰朗
- Organizer
  Biomolecular Simulation2008:frontiers of biomolecular
- Place of Presentation
  Bristrol Zoo,UK
- Year and Date
  2008-01-07
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] やわらかい生体分子が形を制御する仕組み2008
- Author(s)
  北尾彰朗
- Organizer
  東大/駒場/2008年度物性セミナー
- Place of Presentation
  東京大学/東京都文京区
- Year and Date
  2008-05-23
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】マルコフ遷移行列から決定する生体分子の自由エネルギー面2008
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] レア・イベントとしてのタンパク質ダイナミクスと複合体形成2008
- Author(s)
  北尾彰朗
- Organizer
  第46回日本生物物理学会年会
- Place of Presentation
  福岡国際会議場/福岡県博多市
- Year and Date
  2008-12-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】大規模分子動力学法による生体超分子の立体構造変化と機能2008
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2008大規模計算と分子のダイナミクス
- Place of Presentation
  愛知県岡崎コンファレンスセンター
- Year and Date
  2008-02-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] Hydration effects on protein dynamics studied by molecular dynamics simulation of a crystalline protein2008
- Author(s)
  Y. Joti, H. Nakagawa, M. Kataoka and A. Kitao
- Organizer
  5th Open Workshop for "Chemistry of Biological Processes Created by Water and Biomolecules"
- Place of Presentation
  奈良県新公会堂
- Year and Date
  2008-01-25
- Data Source
  KAKENHI-PROJECT-19042005
[Presentation] バイオ分子間相互作用形態の階層的モデリング2008
- Author(s)
  北尾彰朗
- Organizer
  戦略的創造研究推進事業CREST平成20年度公開シンポジウム
- Place of Presentation
  東洋大学/東京都文京区
- Year and Date
  2008-10-20
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】生体超分子の立体構造変化と機能2008
- Author(s)
  北尾彰朗
- Organizer
  第4回連携研究会;分野間連携プロジェクト「巨大計算新手法の開発と分子・物質シミュレーション中核拠点の形成
- Place of Presentation
  愛知県岡崎市自然科学研究機構
- Year and Date
  2008-02-13
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待溝演】大規模計算機シミュレーションで探る生体超分子構造形成から分子機能まで2008
- Author(s)
  北尾彰朗
- Organizer
  ナノテク研究会;平成19年度シンポジウム「近未来ナノテクノロジ技術シーズ」
- Place of Presentation
  群馬県桐生市群馬大学工学部
- Year and Date
  2008-03-19
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 超並列計算機に適した生体分子シミュレーション法の開発2008
- Author(s)
  北尾彰朗
- Organizer
  特定領域研究「生体超分子の構造形成と機能制御の原子機構」第5回公開シンポジウム
- Place of Presentation
  つくば国際会議場 / 茨城県つくば市
- Year and Date
  2008-12-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】分子シミュレーションで探る生体高分子系のダイナミクス2008
- Author(s)
  北尾彰朗
- Organizer
  応用物理学関係連合講演会
- Place of Presentation
  千葉県船橋市日本大学理工学部
- Year and Date
  2008-03-27
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】全原子モデルと粗視化モデルを組み合わせた生体高分子系のマルチスケールシミュレーション2008
- Author(s)
  原田隆平、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】大規模分子動力学シミュレーションで探るべん毛繊維とフックの構造多型2008
- Author(s)
  北尾彰朗
- Organizer
  2008べん毛研究流会ICORP超分子ナノマシンプロジェクト終了報告会
- Place of Presentation
  京都府京都市関西セミナーハウス
- Year and Date
  2008-03-04
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】Hydration effects on protein dynamics studied by molecular dynamics simulation of a crystalline2008
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  第5回「水と生体分子」公開ワークショップ
- Place of Presentation
  奈良県奈良市奈良県新公会堂
- Year and Date
  2008-01-24
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】大規模分子動力学法による生体超分子の立体構造変化と機能2008
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピューターワークショップ2008大規模計算と分子のダイナミクス
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-02-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] Molecular Mechanisms That Control Structure of Flexible Bio-nanomachines2008
- Author(s)
  Kitao, Akio
- Organizer
  The 1st International Conference of the Grand Challen ge to Next-Generation Integrated Nanoscience
- Place of Presentation
  日本科学未来館/東京都江東区
- Year and Date
  2008-06-04
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】分子シミュレーションと溶液散乱で探る蛋白質の立体構造変化2008
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  文部科学省「最先端・高性能汎用スーパーコンピュータの開発利用」プロジェクト第2回公開シンポジウム
- Place of Presentation
  愛知県岡崎市岡崎コンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションと溶液散乱で探る蛋白質の立体構造変化2008
- Author(s)
  城地保昌, 北尾彰朗
- Organizer
  次世代ナノ統合シミュレーションソフトウェアの研究開発第2回公開シンポジウム
- Place of Presentation
  岡崎カンファレンスセンター
- Year and Date
  2008-03-05
- Data Source
  KAKENHI-PROJECT-19042005
[Presentation] 【口頭】生体分子の自由エネルギー地形の解析2007
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】細菌べん毛蛋白質flagellinのアンフォールディングシミュレーション:繊維形成過程の理解を目指して2007
- Author(s)
  Chng Choon-peng、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】分子シミュレーションによるタンパク質分子間ドッキング計算手法の開発2007
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  宮城県仙台市仙台国際センター
- Year and Date
  2007-05-24
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】バクテリオファージT4の感染初期過程シミュレーション2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-08
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】細菌べん毛蛋白質flagellinのアンフォールディングシミュレーション:繊維形成過程の理解を目指して2007
- Author(s)
  Chng Choon-peng、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】サブマイクロ秒領域での蛋白質に揺らぎと機能2007
- Author(s)
  北尾彰朗
- Organizer
  一回論理創薬研究会
- Place of Presentation
  岐阜県岐阜市岐阜大学医学部
- Year and Date
  2007-12-05
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】分子シミュレーションによるタンパク質分子間ドッキング計算手法の開発2007
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  宮城県仙台市仙台国際センター
- Year and Date
  2007-05-24
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】Role of energy frustration in function of protein and supramolecule2007
- Author(s)
  Akio Kitao
- Organizer
  The 7th KIAS-Soongsil Conference on Protein Structure and Function
- Place of Presentation
  Soongsil University,Seoul,KOREA
- Year and Date
  2007-11-04
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】粗視化シミュレーションと並列全原子シミュレーションを組み合わせた生体高分子系の効率的構造空間探索2007
- Author(s)
  原田隆平、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】Conformational changes in proteins and nucleic acids which constitute biological macro-molecules2007
- Author(s)
  Akio Kitao
- Organizer
  Japan-UK Symposium
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-20
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【口頭】タンパク質ユビキチンのNMR緩和と分子シミュレーション2007
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】Conformational changes inproteins and nucleic acids which constitute biological macro-molecules2007
- Author(s)
  Akio Kitao
- Organizer
  Japan-UK Symposium
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-20
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】生体分子の自由エネルギー地形の解析2007
- Author(s)
  櫻庭俊、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションと中性子散乱で探る蛋白質の協奏的運動2007
- Author(s)
  城地保昌, 北尾彰朗
- Organizer
  第45回生物物理学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-18031006
[Presentation] 【口頭】バクテリオファージT4の感染初期過程2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【招待講演】サブマイクロ秒領域での蛋白質に揺らぎと機能2007
- Author(s)
  北尾彰朗
- Organizer
  第一回論理創薬研究会
- Place of Presentation
  岐阜県岐阜市岐阜大学医学部
- Year and Date
  2007-12-05
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】バクテリオファージT4尾部の膜貫通機構2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  宮城県仙台市仙台国際センター
- Year and Date
  2007-05-24
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】粗視化シミュレーションと並列全原子シミュレーションを組み合わせた生体高分子系の効率的構造空間探索2007
- Author(s)
  原田隆平、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-18
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】バクテリオファージT4の感染初期過程2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】分子シミュレーションと中性子干渉性散乱で探る蛋白質の協奏的運動2007
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】バクテリオファージT4尾部の膜貫通機構2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第7回日本蛋白質科学会
- Place of Presentation
  宮城県仙台市仙台国際センター
- Year and Date
  2007-05-24
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】Polymorphic Supercoiling Mechanism of Bacterial Flagellar Filament and Hook2007
- Author(s)
  Akio Kitao
- Organizer
  Theoretical Colloquia Series
- Place of Presentation
  Los Alamos, USA
- Year and Date
  2007-06-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】aPCA analysis of NMR on ubiquitin proteins and the webserver tool2007
- Author(s)
  Yang Lee-Wei、Eran Eyal、Ivet Bahar、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】分子シミュレーションと中性子干渉性散乱で探る蛋白質の協奏的運動2007
- Author(s)
  城地保昌、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【口頭】aPCA analysis of NMR on ubiquitin proteins and the webserver tool2007
- Author(s)
  Yang Lee-Wei、Eran Eyal、Lvet Bahar、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】The dynamic predisposition of (the location of) enzyme active sites2007
- Author(s)
  Yang Lee-Wei, Akio Kitao, Ivet Bahar
- Organizer
  AFP/Biosapien
- Place of Presentation
  Vienna, Austria
- Year and Date
  2007-07-19
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】バクテリオファージT4の感染機構2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第3回生体超分子の構造形成と機能制御の原子機構
- Place of Presentation
  静岡県熱海市ホテルニューアカオ
- Year and Date
  2007-07-11
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】タンパク質ユビキチンのNMR緩和と分子シミュレーション2007
- Author(s)
  竹村和浩、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフイコ横浜)
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】The dynamic predisisposision of(the location of)enzyme active sites2007
- Author(s)
  Yang Lee-Wei, Akio Kitao, Lvet Bahar
- Organizer
  AFP/Biosapien
- Place of Presentation
  Vienna,Austria
- Year and Date
  2007-07-19
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】バクテリオファージT4の感染初期過程シミュレーション2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  特定領域研究「生体超分子構造」第4回公開シンポジウム
- Place of Presentation
  大阪府豊中市千里ライフサイエンスセンター
- Year and Date
  2007-12-18
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】Polyrnorphic Supercoiling Mechanism of Bacterial Flagellar Fllamentand Hook2007
- Author(s)
  Akio Kitao
- Organizer
  Theoretical Colloquia Series
- Place of Presentation
  Los Alamos,USA
- Year and Date
  2007-06-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【招待講演】Role of energy frustration in function of protein and supramolecule2007
- Author(s)
  Akio Kitao
- Organizer
  The 7th KIAS-Soongsil Conference on Protein Structure and Function
- Place of Presentation
  Soongsil University, Seoul, KOREA
- Year and Date
  2007-10-04
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】生体分子の自由エネルギー地形の解析2007
- Author(s)
  櫻庭俊、北尾彰朗、有坂文雄
- Organizer
  第3回生体超分子の構造形成と機能制御の原子機構
- Place of Presentation
  静岡県熱海市ホテルニューアカオ
- Year and Date
  2007-07-11
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【ポスター】バクテリオファージT4の感染機構2007
- Author(s)
  二島渉、金丸周司、有坂文雄、北尾彰朗
- Organizer
  第3回生体超分子の構造形成と機能制御の原子機構
- Place of Presentation
  静岡県熱海市ホテルニューアカオ
- Year and Date
  2007-07-11
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 【口頭】Dynomics portal-An integral effort on developing and organizing dynamics web servers/databases2007
- Author(s)
  Yang Lee-Wei、二島渉、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【ポスター】生体分子の自由エネルギー地形の解析2007
- Author(s)
  櫻庭俊、北尾彰朗、有坂文雄
- Organizer
  第3回生体超分子の構造形成と機能制御の原子機構
- Place of Presentation
  静岡県熱海市ホテルニューアカオ
- Year and Date
  2007-07-11
- Data Source
  KAKENHI-PROJECT-16087202
[Presentation] 【口頭】Dynomics portal-An integral effort ond eveloping and organizing dynamics webservers/databases2007
- Author(s)
  Yang Lee-Wei、二島渉、北尾彰朗
- Organizer
  第45回日本生物物理学会年会
- Place of Presentation
  神奈川県横浜市パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19370062
[Presentation] 分子シミュレーションと中性子散乱で探る蛋白質の協奏的運動2007
- Author(s)
  城地保昌, 北尾彰朗
- Organizer
  第45回生物物理学会年会
- Place of Presentation
  パシフィコ横浜
- Year and Date
  2007-12-21
- Data Source
  KAKENHI-PROJECT-19042005
[Presentation] Observing soft functional motion of proteins in silico
- Author(s)
  Akio Kitao
- Organizer
  第52回日本生物物理学会年会シンポジウム
- Place of Presentation
  札幌コンベンションセンター（北海道・札幌市）
- Year and Date
  2014-09-25 – 2014-09-27
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] 高度な分子動力学によるタンパク質の機能シミュレーション
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピュータワークショップ２０１５
- Place of Presentation
  岡崎コンファレンスセンター（愛知県・岡崎市）
- Year and Date
  2015-01-29 – 2015-01-30
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Conformational Transition Pathway and Free Energy Analyses of Proteins by Parallel Cascade Selection Molecular Dynamics (PaCS-MD)
- Author(s)
  Ryuhei Harada, Yasutaka Nishihara, Nobuhiko Wakai and Akio Kitao
- Organizer
  International Conference of Computational Methods in Sciences and Engineering (ICCMSE 2014)
- Place of Presentation
  Athens, Greece/Metropolitan Hotel
- Year and Date
  2014-04-04 – 2014-04-07
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] 高度な分子動力学によるタンパク質の機能シミュレーション
- Author(s)
  北尾彰朗
- Organizer
  スーパーコンピュータワークショップ２０１５
- Place of Presentation
  岡崎コンファレンスセンター（愛知県・岡崎市）
- Year and Date
  2015-01-29 – 2015-01-30
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Conformational Transition Pathway and Free Energy Analyses of Proteins by Parallel Cascade Selection Molecular Dynamics (PaCS-MD)
- Author(s)
  Ryuhei Harada, Yasutaka Nishihara, Nobuhiko Wakai and Akio Kitao
- Organizer
  International Conference of Computational Methods in Sciences and Engineering (ICCMSE 2014)
- Place of Presentation
  Athens, Greece/Metropolitan Hotel
- Year and Date
  2014-04-04 – 2014-04-07
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Membrane deformation induced by proteins
- Author(s)
  Akio Kitao
- Organizer
  分子研研究会「生体分子の構造、ダイナッミクス、機能」「Architecture, dynamics, and functionality of molecular biosystems」
- Place of Presentation
  自然科学研究機構　分子研研究棟201セミナー室（愛知県・岡崎市）
- Year and Date
  2015-03-30 – 2015-03-31
- Invited
- Data Source
  KAKENHI-PROJECT-23370066
[Presentation] Membrane deformation induced by proteins
- Author(s)
  Akio Kitao
- Organizer
  分子研研究会「生体分子の構造、ダイナッミクス、機能」「Architecture, dynamics, and functionality of molecular biosystems」
- Place of Presentation
  自然科学研究機構　分子研研究棟201セミナー室（愛知県・岡崎市）
- Year and Date
  2015-03-30 – 2015-03-31
- Invited
- Data Source
  KAKENHI-PLANNED-25104002
[Presentation] Observing soft functional motion of proteins in silico
- Author(s)
  Akio Kitao
- Organizer
  第52回日本生物物理学会年会シンポジウム
- Place of Presentation
  札幌コンベンションセンター（北海道・札幌市）
- Year and Date
  2014-09-25 – 2014-09-27
- Invited
- Data Source
  KAKENHI-PROJECT-23370066

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Kitao Akio 北尾 彰朗

KITAO Akio 北尾 彰朗

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Investigating ligand-controlled GPCR activation mechanisms by cutting edge simulationPrincipal InvestigatorOngoing

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回転分子モーター制御機構解明への再構成的アプローチOngoing

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Flexibility, interactions, and function control mechanisms in multi-domain proteinsPrincipal Investigator

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Softness-function relationship in large molecules and molecular assemblies investigated at atomic resolutionPrincipal Investigator

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タンパク質複合体形成・解離に関わるモードカップリング解析法開発Principal Investigator

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Structure modeling and functional analysis of rotary motor state proteins based on mutational informationPrincipal Investigator

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Roles of hyper-anisotropic dynamics and frustration on protein function investigated in sub-msec orderPrincipal Investigator

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分子認識における蛋白質のエネルギー地形階層性と水和構造変化の役割Principal Investigator

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Kitao Akio 北尾彰朗

KITAO Akio 北尾彰朗