Kanehisa Minoru 金久實

… Alternative Names

Researcher Number	70183275
External Links
Affiliation (Current)	2020: 京都大学, 化学研究所, 研究員
Affiliation (based on the past Project Information) *help	2003 – 2009: 京都大学, 化学研究所, 教授 1987 – 2001: 京都大学, 化学研究所, 教授 1986: 京大, 化学研究所, 助教授
Review Section/Research Field	Principal Investigator Biological Sciences / 生物物性学 Except Principal Investigator Biological Sciences / Laboratory medicine / Molecular biology
Keywords	Principal Investigator ゲノム解析 / 蛋白質・核酸の構造と機能 / デ-タベ-ス / 知識情報処理 / 配列解析 / データベース / ネットワーク / コンピュ-タネットワ-ク / バイオインフォマティクス / システム生物学 … More Except Principal Investigator データベース / ヒトゲノム / ゲノム / ゲノム構造解析 / informatics / DNA / 遺伝子情報 / 遺伝子診断 / 非メンデル遺伝 / ガイドライン / UNESCO / 日本遺伝子診療学会 / 胎児診断 / DNAシーケンシング / トランスクリプトーム / ヒト多型タイピング / 生体生命情報学 / 進化 / 微生物 / 疾患遺伝子 / 情報解析 / 表現型解析 / バイオインフォマティクス / ゲノムリシーケンス / 病原微生物解析 / ゲノムアノテーション / 疾患関連遺伝子解析 / ゲノムリシーケンス / 配列解析 / 発現解析 / 植物ゲノム解析 / 調査研究 / cDNAプロジェクト / DNA解析技術 / 大量情報処理 / ヒトゲノム研究 / ヒトゲノム解析 / cDNAライブラリ- / 大量生物遺伝情報の科学 / 各種生物ゲノム / 研究環境・研究体制 / 将来計画策定 / Human Genome / proposals / physical mapping / cDNA analyses / DNA technologies / co-ordination / DNAデ-タバンク / DDBJ / Gen Bank / EMBLデ-タライブラリ- / 国際諮問委員会 / DNAデ-タベ-ス / 国際協同研究事業 / DNA配列デ-タ / DNA data bank / DNA Data Bank of Japan (DDBJ) / GenBank / EMBL Data Library / International Advisory Committee / DNA database / International collaborative research project / DNA sequence data / ゲノム研究 / ゲノム機能解析 / ゲノム情報解析 / 枯草菌ゲノム解析 / 酵母ゲノム / Genome research / Structural analyzes / Functional analysis / Genome informatics / Human genome / Analysis of B.subtilis / Yeast genome / Database / 遺伝子 / 遺伝子病 / モデル実験生物 / 発生分化 / インフォマティクス / ヒトゲノム計画 / 情報科学 / シークエンス / 実験モデル生物 / 国際協力 / Genome / gene / genetic disease Less

Support for data analysis and sharing
- Principal Investigator
  
  TAKAGI Toshihisa
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  The University of Tokyo
Backbone Database for Understanding the Biological SystemsPrincipal Investigator
- Principal Investigator
  
  KANEHISA Minoru
- Project Period (FY)
  2005 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
Comprehensive genomics towards the frontiers of biology and med
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2004 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics
Integrated Database of Microbial Genomes and Cellular FunctionsPrincipal Investigator
- Principal Investigator
  
  KANEHISA Minoru
- Project Period (FY)
  2003 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kyoto University
遺伝子診断推進への基礎的検討-遺伝子情報環境の調査と提言
- Principal Investigator
  
  上田國寛
- Project Period (FY)
  1996
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Laboratory medicine
- Research Institution
  Kyoto University
Genome Science : the new development of Bioscience is based on Human Genome Analysis
- Principal Investigator
  
  SAKAKI Yoshiyuki
- Project Period (FY)
  1996 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  The University of Tokyo
Biological Knowledge Based on Genome InformationPrincipal Investigator
- Principal Investigator
  
  KANEHISA Minoru
- Project Period (FY)
  1996 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  KYOTO UNIVERSITY
Japan-French Joint Research on Genome
- Principal Investigator
  
  MATSUBARA Kenichi
- Project Period (FY)
  1995 – 1997
- Research Category
  
  Grant-in-Aid for international Scientific Research
- Research Field
  
  Molecular biology
- Research Institution
  International Institute for Advanced Studies
  Osaka University
ゲノム解析に伴う大量知識情報処理の研究Principal Investigator
- Principal Investigator
  
  金久實
- Project Period (FY)
  1991
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Kyoto University
ゲノム解析に伴う大量知識情報処理の研究(総括班)Principal Investigator
- Principal Investigator
  
  金久實
- Project Period (FY)
  1991
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Kyoto University
ゲノム解析に伴う大量知識情報処理の研究Principal Investigator
- Principal Investigator
  
  金久實
- Project Period (FY)
  1991 – 1995
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Kyoto University
Large-scale knowledge information processing in genome analysisPrincipal Investigator
- Principal Investigator
  
  KANEHISA Minoru
- Project Period (FY)
  1991 – 1995
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  KYOTO UNIVERSITY
ゲノム解析に伴う大量知識情報処理の研究Principal Investigator
- Principal Investigator
  
  金久實
- Project Period (FY)
  1990
- Research Category
  
  Grant-in-Aid for Co-operative Research (B)
- Research Institution
  Kyoto University
Scientific Surveys on the International Collaborations in Development and Administration of the DNA Databank
- Principal Investigator
  
  GOJOBORI Takashi
- Project Period (FY)
  1990
- Research Category
  
  Grant-in-Aid for Overseas Scientific Survey.
- Research Institution
  National Institute of Genetics
Studies with Promotion of Human Genome Programe
- Principal Investigator
  
  MATSUBARA Kenichi
- Project Period (FY)
  1989 – 1990
- Research Institution
  Osaka University
Prediction of protein functional sites by multivariate analysis of amino acid sequencesPrincipal Investigator
- Principal Investigator
  
  KANEHISA Minoru
- Project Period (FY)
  1988 – 1989
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  生物物性学
- Research Institution
  KYOTO UNIVERSITY
DNAデータベースの構築に関する国際協力の確立に関する調査研究
- Principal Investigator
  
  宮澤三造
- Project Period (FY)
  1987
- Research Category
  
  Grant-in-Aid for Overseas Scientific Research
データベースを利用した核酸シグナルのコンピュータ解析Principal Investigator
- Principal Investigator
  
  金久實
- Project Period (FY)
  1986
- Research Category
  
  Grant-in-Aid for Special Project Research
- Research Institution
  Kyoto University

All 2010 2009 2008 2007 2006 2005 2004

All Journal Article Presentation Book

[Book] Knowledge based analysis of protein interaction networks in neurodegenerative diseases. In "Neuroproteomics" (Alzate, O., ed. )2009
- Author(s)
  Kanehisa, M., Limviphuvadh, V., Tanabe, M.
- Publisher
  CRC Press
- Data Source
  KAKENHI-PROJECT-17020005
[Book] 生化学2008
- Author(s)
  本渉、田辺麻央、矢野亜津子、金久實
- Publisher
  バイオインフォマティクス・システムバイオロジーとKEGG
- Data Source
  KAKENHI-PROJECT-17020005
[Book] 蛋白質核酸酵素2008
- Author(s)
  橋本浩介、五斗進、金久實
- Publisher
  KEGG GLYCANデータベースと糖鎖インフォマティクス
- Data Source
  KAKENHI-PROJECT-17020005
[Book] 実験医学2008
- Author(s)
  橋本浩介、五斗進、金久實
- Publisher
  KEGG : 生命システム情報統合データベース
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG for representation and analysis of molecular networks involving diseases and drugs.2010
- Author(s)
  Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M., Hirakawa, M.
- Journal Title
  
  Nucleic Acids Res. 38
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] PathPred: an enzyme-catalyzed metabolic pathway prediction server.2010
- Author(s)
  Moriya, Y., Shigemizu, D., Hattori, M., Tokimatsu, T., Kotera, M., Goto, S., Kanehisa, M.
- Journal Title
  
  Nucleic Acids Res. Epub 2010
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.2009
- Author(s)
  Hashimoto, K., Tokimatsu, T., Kawano, S., Yoshizawa, A.C. , Okuda, S., Goto, S.,Kanehisa, M.
- Journal Title
  
  Carbohydr. Res. 344
  
  Pages: 881-887
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction and analysis of chemical modification patterns in drug development2009
- Author(s)
  Shigemizu, D., Araki, M., Okuda, S., Goto, S., and Kanehisa, M
- Journal Title
  
  J. Chem. Inf. Model (in press)
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] E-zyme : predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.2009
- Author(s)
  Yamanishi, Y., Hattori, M., Kotera, M., Goto, S., Kanehisa, M.
- Journal Title
  
  Bioinformatics 25
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.2009
- Author(s)
  Yamanishi, Y., Hattori, M., Kotera, M., Goto, S., Kanehisa, M.
- Journal Title
  
  Bioinformatics 25
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.2009
- Author(s)
  Hashimoto, K., Tokimatsu, T., Kawano, S., Yoshizawa, A.C., Okuda, S., Goto, S., Kanehisa, M.
- Journal Title
  
  Carbohydr. Res. 344
  
  Pages: 881-887
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction and analysis of chemical modification patterns in drug development.2009
- Author(s)
  Shigemizu, D., Araki, M., Okuda, S., Goto, S., Kanehisa, M.
- Journal Title
  
  J. Chem. Inf. Model. 49
  
  Pages: 1122-1129
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction and analysis of chemical modification patterns in drug development.2009
- Author(s)
  Shigemizu, D., Araki, M., Okuda, S., Goto, S., Kanehisa, M.
- Journal Title
  
  J.Chem. Inf. Model. 49
  
  Pages: 1122-1129
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Characterization and classification of adverse drug interactions.2009
- Author(s)
  Takarabe, M., Shigemizu, D., Kotera, M., Goto, S., Kanehisa, M.
- Journal Title
  
  Genome Informatics 22
  
  Pages: 167-175
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Analysis of a lipid biosynthesis protein family and phospholipid structural variations.2009
- Author(s)
  Tanaka, M., Moriya, Y., Goto, S., Kanehisa, M.
- Journal Title
  
  Genome Informatics 22
  
  Pages: 191-201
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Generalized reaction patterns for prediction of unknown enzymatic reactions2008
- Author(s)
  Shimizu, Y., Hattori, M., Goto, S., and Kanehisa. M
- Journal Title
  
  Genome Informatics 20
  
  Pages: 149-158
- NAID
  130003997519
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture2008
- Author(s)
  Kojima, K.K. and Kanehisa, M.
- Journal Title
  
  Mol. Biol. Evol 25
  
  Pages: 1395-1404
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.2008
- Author(s)
  Yamanishi, Y., Araki, M., Gutteridge, A., Honda, W., Kanehisa, M.
- Journal Title
  
  Bioinformatics 24
  
  Pages: 232-240
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG Atlas mapping for global analysis of metabolic pathways.2008
- Author(s)
  Okuda, S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto, S., Kanehisa, M.
- Journal Title
  
  Nucleic Acids Res. 36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] The repertoire of desaturases and elongases reveals fatty acidvariations in 56 eukaryotic genomes2008
- Author(s)
  Hashimoto, K. (Kanehisa, M.)
- Journal Title
  
  Journal of Lipid Research 49
  
  Pages: 183-191
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.2008
- Author(s)
  Hashimoto, K., Yoshizawa, A.C., Okuda, S., Kuma, K., Goto, S., and Kanehisa, M.
- Journal Title
  
  J. Lipid Res. 49
  
  Pages: 183-191
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG for linking genomes t0 life and the environment.2008
- Author(s)
  Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., and yamanishi, Y.
- Journal Title
  
  Nucleic Acids Res. 6
  
  Pages: 480-484
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Mining significant tree patterns in carbohydrate sugar chains2008
- Author(s)
  Hashimoto, K., Takigawa, I., Shiga, M., Kanehisa, M., and
- Journal Title
  
  Bioinformatics 24
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG for linking genomes to life and the environment.2008
- Author(s)
  Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T., Yamanishi, Y.
- Journal Title
  
  Nucleic Acids Res. 36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG Atlas mapping for global analysis of metabolic pathways2008
- Author(s)
  Okuda ; S., Yamada, T., Hamajima, M., Itoh, M., Katayama, T., Bork, P., Goto. S. and Kanehisa, M
- Journal Title
  
  Nucleic Acids Res 36
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG for linking genomes to life and the environment2008
- Author(s)
  Kanehisa, M.
- Journal Title
  
  Nucleic Acids Research 36
  
  Pages: 480-484
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.2008
- Author(s)
  Kojima, K.K., Kanehisa, M.
- Journal Title
  
  Mol. Biol. Evol. 25
  
  Pages: 1395-1404
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.2008
- Author(s)
  Hashimoto, K., Yoshizawa, A.C., Okuda, S., Kuma, K., Goto, S., Kanehisa, M.
- Journal Title
  
  J. Lipid Res. 49
  
  Pages: 183-191
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis. Environ2007
- Author(s)
  Kadowaki, T. (Kanehisa, M.)
- Journal Title
  
  Science and Technology 41
  
  Pages: 7997-8003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] KAAS: an automatic genome annotation and pathway reconstruction server2007
- Author(s)
  Moriya, Y. (Kanehisa, M.)
- Journal Title
  
  Nucleic Acids Research 35
  
  Pages: 182-185
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.2007
- Author(s)
  Oh, M., Yamada, T., Hattori, M., Goto, S., Kanehisa, M.
- Journal Title
  
  J. Chem. Inf. Model. 47
  
  Pages: 1702-1712
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] The commonality of protein interaction networks determined in Neurodegenerative disordets (NDDS).2007
- Author(s)
  Limviphuvadh, V., Tanaka, S., Goto, S., Ueda, K., and Kanehisa, M.
- Journal Title
  
  Bioinformatics 23
  
  Pages: 2129-2138
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Evolutionary history and functional implications of protein domains and their combinations in eukaryotes.2007
- Author(s)
  Itoh, M., Nacher, J.C., Kuma, K.I., Goto, S., Kanehisa, M.
- Journal Title
  
  Genome Biol. 8
- NAID
  120004770238
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis.2007
- Author(s)
  Kadowaki, T., Wheelock, C.E., Adachi, T., Kudo, T., Okamoto, S., Tanaka, N., Tonomura, K., Tsujimoto, G., Mamitsuka, H., Goto, S., Kanehisa, M.
- Journal Title
  
  Environ. Sci. Technol. 41
  
  Pages: 7997-8003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Evolutionary history and functional implications of protein domains and their combinations in eukaryotes.2007
- Author(s)
  Itoh, M., Nacher, J.C., Kuma, K.I., Goto, S., and Kanehisa, M.
- Journal Title
  
  Genome Biol. 8
  
  Pages: 121-121
- NAID
  120004770238
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Evolutionary history and functional implications of protein domains and their combinations in eukaryotes2007
- Author(s)
  Itoh, M. (Kanehisa, M.)
- Journal Title
  
  Genome Biology 8
  
  Pages: 121-121
- NAID
  120004770238
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.2007
- Author(s)
  Okamoto, S., Yamanishi, Y., Ehira, S., Kawashima, S., Tonomura, K., Kanehisa, M.
- Journal Title
  
  Proteomics 7
  
  Pages: 900-909
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes2007
- Author(s)
  Minowa, Y. (Kanehisa, M.)
- Journal Title
  
  Journal of Molecular Biology 368
  
  Pages: 1500-1517
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Observing metabolic functions at the genome scale.2007
- Author(s)
  er, J.C., de Daruvar, A., Kanehisa, M.
- Journal Title
  
  Genome Biol. 8
- NAID
  120004770252
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.2007
- Author(s)
  Fujita, M., Mihara, H., Goto, S., Esaki, N., Kanehisa, M.
- Journal Title
  
  BMC Bioinformatics 8
  
  Pages: 225-225
- NAID
  120004770237
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs)2007
- Author(s)
  Limviphuvadh, V. (Kanehisa, M.)
- Journal Title
  
  Bioinformatics 23
  
  Pages: 2129-2138
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.2007
- Author(s)
  Oh, M., Yamada, T., Hattori, M., Goto, S., and Kanehisa, M.
- Journal Title
  
  J. Chem. Inf. Model. 47
  
  Pages: 1702-1712
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.2007
- Author(s)
  Fujita, M., Mihara, H., Goto, S., Esaki, N., and Kanehisa, M.
- Journal Title
  
  BMC Bioinformatics 8
  
  Pages: 225-225
- NAID
  120004770237
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Prediction of missing enzyme genes in bacterial metabolic network: a reconstruction of lysine degradation pathway of Pseudomonas aeruginosa.2007
- Author(s)
  Yamanishi, Y., Mihara, H., Osaki, M., Muramatsu, H., Esaki, N., Sato, T., Hizukuri, Y., Goto, S., Kanehisa, M.
- Journal Title
  
  FEBS J. 274
  
  Pages: 2262-2273
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.2007
- Author(s)
  Minowa, Y., Araki, M., Kanehisa, M.
- Journal Title
  
  J. Mol. Biol. 368
  
  Pages: 1500-1517
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach2007
- Author(s)
  Fujita, M. (Kanehisa, M.)
- Journal Title
  
  BMC Bioinformatics 8
  
  Pages: 225-225
- NAID
  120004770237
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.2007
- Author(s)
  Oh, M., Yamada, T., Hattori, M., Goto, S., Kanehisa, M.
- Journal Title
  
  J.Chem.Inf.Model. (in Press)
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.2007
- Author(s)
  Minowa, Y., Araki, M., Kanehisa, M.
- Journal Title
  
  J.Mol.Biol. (in Press)
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.2007
- Author(s)
  Minowa, Y., Araki, M., and Kanehisa, M.
- Journal Title
  
  J. Mol. Biol. 368
  
  Pages: 1500-1517
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis. Environ.2007
- Author(s)
  Kadowaki, T., Wheelock, C.E., Adachi, T., Kudo, T., Okamoto, S., Tanaka, N., Tonomura, K., Tsujimoto, G., Mamitsuka, H., Goto, S., and Kanehisa, M.
- Journal Title
  
  Sci. Technol. 41
  
  Pages: 7997-8003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KAAS: an automatic genome annotation and pathway reconstruction server.2007
- Author(s)
  Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A., and Kanehisa, M.
- Journal Title
  
  Nucleic Acids Res. 35
  
  Pages: 182-185
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] The commonality of protein interaction networks determined in Neurodegenerative disorders (NDDs).2007
- Author(s)
  Limviphuvadh, V., Tanaka, S., Goto, S., Ueda, K., Kanehisa, M.
- Journal Title
  
  Bioinformatics 23
  
  Pages: 2129-2138
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways2007
- Author(s)
  Oh, M. (Kanehisa, M.)
- Journal Title
  
  Journal of Chemical Information and Modeling 47
  
  Pages: 1702-1712
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] KAAS: an automatic genome annotation and pathway reconstruction server.2007
- Author(s)
  Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A., Kanehisa, M.
- Journal Title
  
  Nucleic Acids Res. 35
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.2006
- Author(s)
  Schwartz, J.M., Kanehisa, M.
- Journal Title
  
  BMC Bioinformatics 7
  
  Pages: 186-186
- NAID
  120004770253
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction of phylogenetic network modules from the metabolic network.2006
- Author(s)
  Yamada, T., Kanehisa, M., Goto, S.
- Journal Title
  
  BMC Bioinformatics 7
  
  Pages: 130-130
- NAID
  120004770316
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.2006
- Author(s)
  Yoshizawa, A.C., Kawashima, S., Okuda, S., Fujita, M., Itoh, M., Moriya, Y., Hattori, M., Kanehisa, M.
- Journal Title
  
  Traffic 7
  
  Pages: 1104-1118
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] EGassembler : online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.2006
- Author(s)
  Masoudi-Nejad, A., Tonomura, K., Kawashima, S., Moriya, Y., Suzuki, M., Itoh, M., Kanehisa, M., Endo, T., Colo, S.
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG as a glycome informatics resource.2006
- Author(s)
  Hashimoto, K., Goto, S., Kawano, S., Aoki-Kinoshita, K.F., Ueda, N., Hamajima, M., Kawasaki, T., Kanehisa, M.
- Journal Title
  
  Glycobiology 16
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Quantitative elementary mode analysis of metabolic pathways : the example of yeast glycolysis.2006
- Author(s)
  Schwartz, J.M., Kanehisa, M.
- Journal Title
  
  BMC Bioinformatics 7
  
  Pages: 186-186
- NAID
  120004770253
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] From genomics to chemical genomics : new developments in KEGG2006
- Author(s)
  Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., Hirakawa, M.
- Journal Title
  
  Nucleic Acids Research 34(Database issue)
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] From genomics to chemical genomics: new developments in KEGG.2006
- Author(s)
  Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K.F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., Hirakawa, M.
- Journal Title
  
  Nucleic Acids Res. 34
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] KEGG as a glycome informatics resource.2006
- Author(s)
  Hashimoto, K., Goto, S., Kawano, S., Aoki-Kinoshita, K.F., Ueda, N., Hamajima, M., Kawasaki, T., Kanehisa, M.
- Journal Title
  
  Glycobiology (in press)
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] EGassembler : online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.2006
- Author(s)
  Masoudi-Nejad, A., Tonomura, K., Kawashima, S., Moriya, Y., Suzuki, M., Itoh, M., Kanehisa, M., Endo, T., Goto, S.
- Journal Title
  
  Nucleic Acids Research 34(in press)
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] EGassembler : online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments2006
- Author(s)
  Masoudi-Nejad A., (Kanehisa, M.)
- Journal Title
  
  Nucleic Acids Res. 34
- Data Source
  KAKENHI-PROJECT-17020001
[Journal Article] EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.2006
- Author(s)
  Masoudi-Nejad, A., Tonomura, K., Kawashima, S., Moriya, Y., Suzuki, M., Itoh, M., Kanehisa, M., Endo, T., Goto, S.
- Journal Title
  
  Nucleic Acids Res. 34
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Fast and accurate database homology search using upper bounds of local alignment scores.2005
- Author(s)
  Itoh, M., Goto, S., Akutsu, T., Kanehisa, M.
- Journal Title
  
  Bioinformatics 21
  
  Pages: 912-921
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Fast and accurate database homology search using upper bounds of local alignment scores.2005
- Author(s)
  Itoh, M., Goto, S., Akutsu, T., Kanehisa, M
- Journal Title
  
  Bioinformatics 20(in press)
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.2005
- Author(s)
  Kawano, S., Hashimoto, K., Miyama, T., Goto, S., Kanehisa, M.
- Journal Title
  
  Bioinformatics 21(21)
  
  Pages: 3976-3982
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction of leukemia specific glycan motifs in human by computational glycomics.2005
- Author(s)
  Hizukuri, Y., Yamanishi, Y., Nakamura, O., Yagi, F., Goto, S., Kanehisa, M.
- Journal Title
  
  Carbohydrate Research 340(14)
  
  Pages: 2270-2278
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Supervised enzyme network inference from the integration of genomic data and chemical information.2005
- Author(s)
  Yamanishi, Y., Vert, J.-P., Kanehisa, M.
- Journal Title
  
  Bioinformatics 21
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.2005
- Author(s)
  Kawano, S., Hashimoto, K., Miyama, T., Goto, S., Kanehisa, M.
- Journal Title
  
  Bioinformatics 21
  
  Pages: 3976-3982
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] A global representation of the carbohydrate structures : a tool for the analysis of glycan.2005
- Author(s)
  Hashimoto, K., Kawano, S., Goto, S., Aoki-Kinoshita, K., Kawashima, M., Kanehisa, M.
- Journal Title
  
  Genome Informatics 16(1)
  
  Pages: 214-222
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.2005
- Author(s)
  Schwartz, J.M., Kanehisa, M.
- Journal Title
  
  Bioinformatics 21
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Extraction of leukemia specific glycan motifs in human by computational glycomics.2005
- Author(s)
  Hizukuri, Y., Yamanishi, Y., Nakamura, O., Yagi, F., Goto, S., Kanehisa, M.
- Journal Title
  
  Carbohydr. Res. 340
  
  Pages: 2270-2278
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17020005
[Journal Article] Protein network inference from multiple genomic data : a supervised approach.2004
- Author(s)
  Yamanishi, Y., Vert, J.-P., Kanehisa, M.
- Journal Title
  
  Bioinformatics 20
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Clustering of database sequences for fast homology search using upper bounds on alignment score.2004
- Author(s)
  Itoh, M., Akutsu, T., Kanehisa, M.
- Journal Title
  
  Genome Informatics 15
  
  Pages: 93-104
- NAID
  130003812084
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domain's in eukaryotes and prokaryotes.2004
- Author(s)
  Igarashi, Y., Aoki, K.F., Mamitsuka, H., Kuma, K., Kanehisa.M.
- Journal Title
  
  Mol.Biol.Evol. 21
  
  Pages: 2149-2160
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Clustering of database sequences for fast homology search using upper bounds on alignment score.2004
- Author(s)
  Itoh, M., Akutsu, T., Kanehisa, M.
- Journal Title
  
  Genome Informatics 15(1)
  
  Pages: 93-104
- NAID
  130003812084
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Using protein motif combinations to update KEGG pathway maps and orthologue tables.2004
- Author(s)
  Nikitin, F., Rance, B., Itoh, M., Kanehisa, M., Lisacek, F.
- Journal Title
  
  Genome Informatics 15
  
  Pages: 266-275
- NAID
  130003997370
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domains in eukaryotes and prokaryotes.2004
- Author(s)
  Igarashi, Y., Aoki, K.F., Mamitsuka, H., Kuma, K., Kanehisa, M.
- Journal Title
  
  Mol. Biol. Evol. 21
  
  Pages: 2149-2160
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domains in eukaryotes and prokaryotes.2004
- Author(s)
  Igarashi, Y., Aoki, K.F., Mamitsuka, H., Kuma, K., Kanehisa, M.
- Journal Title
  
  Mol.Biol.Evol. 21
  
  Pages: 2149-2160
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15013227
[Journal Article] Extraction of phylogenetic network modules from prokayrote metabolic pathways.2004
- Author(s)
  Yamada, T., Goto, S., Kanehisa, M.
- Journal Title
  
  Genome Informatics 15
  
  Pages: 249-258
- NAID
  130003812098
- Data Source
  KAKENHI-PROJECT-15013227
[Presentation] From metagenomes to pathways and diseases.2010
- Author(s)
  Kanehisa, M.
- Organizer
  First International Conference on Human Metagenomics
- Place of Presentation
  Shenzhen, China
- Year and Date
  2010-03-03
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Chemical continuity of reaction centers along successive metabolic reactions.2009
- Author(s)
  Hattori, M., Kotera, M., Muto, A., Goto, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-14
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Analysis of plant UGT family sequences and substrate specificity.2009
- Author(s)
  Nishimura, Y., Tokimatsu, T., Kotera, M., Goto, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Extracting common substructures of GPCR ligands.2009
- Author(s)
  Erguner, B., Hattori, M., Goto, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Comprehensive analysis of polyketide synthase families.2009
- Author(s)
  Shimizu, Y., Kotera, M., Tokimatsu, T., Hattori, M., Goto, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Structural clustering of plant secondary metabolite to estimate compound classes reflecting their biosynthetic pathway.2009
- Author(s)
  Tokimatsu, T., Kotera, M., Goto, S., Kanaya, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-14
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Reclassification of oxidoreductase subclasses based on the relationships of reductants and oxidants.2009
- Author(s)
  Kotera, M., Tokimatsu, T., Nakagawa, Z., Moriya, Y., Hattori, M., Goto, S., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-15
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Structural similarity-based approach to characterize crude drug components.2009
- Author(s)
  tuto, A., Kanehisa, M.
- Organizer
  The 20th International Conference on Genome Informatics
- Place of Presentation
  横浜
- Year and Date
  2009-12-14
- Data Source
  KAKENHI-PROJECT-17020005
[Presentation] Comprehensive analysis of enzymatic reaction mechanisms basedon the EC classification and KEGG RPAIR database2007
- Author(s)
  Shimizu, Y. (Kanehisa, M.)
- Organizer
  The 2007 Annual Conference of Japanese Society for Bioinformatics (JSBi2007)
- Place of Presentation
  横浜
- Year and Date
  2007-12-17
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] Analysis of common substructures of metabolic compoundswithin the different organism groups2007
- Author(s)
  Muto, A.(Kanehisa, M.)
- Organizer
  The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
- Place of Presentation
  東京
- Year and Date
  2007-08-03
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] KEGG as a glycome informatics resource2007
- Author(s)
  Hashimoto, K.(Kanehisa, M.)
- Organizer
  Gordon Research Conferences:Glycobiology
- Place of Presentation
  Ventura, California, USA
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] Analysis of tissue specific expression patterns of metabolic pathway2007
- Author(s)
  Takarabe, M.(Kanehisa, M.)
- Organizer
  The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] Prediction of glycan structures form gene expression databased on improved scoring scheme2007
- Author(s)
  Suga, A. (Kanehisa, M.)
- Organizer
  Gordon Research Conferences: Glycobiology
- Place of Presentation
  Ventura, California, USA
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] パラログ遺伝子による代謝反応の基質多様性の解析2007
- Author(s)
  田中道廣(金久實)
- Organizer
  第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] An improved scoring scheme for predicting glycan structures from gene expression data2007
- Author(s)
  Suga, A.(Kanehisa, M.)
- Organizer
  The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
- Place of Presentation
  東京
- Year and Date
  2007-08-02
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] KEGG DRUG structure mapから化学変換パターンの抽出2007
- Author(s)
  重水大智 (金久實)
- Organizer
  第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] An improved scoring scheme for predicting glycan structures from gene expression data, The Seventh Annual International Workshop on Bioinformatics and Systems Biology20072007
- Author(s)
  Suga, A. (Kanehisa, M. )
- Organizer
  IBSB2007
- Place of Presentation
  東京
- Year and Date
  2007-08-02
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] DesaturaseとElongaseの網羅的探索及びその組合せによる脂肪酸予測2007
- Author(s)
  橋本浩介(金久實)
- Organizer
  第30回分子生物学会年会・第80回日本生化学会大会(BMB2007)
- Place of Presentation
  横浜
- Data Source
  KAKENHI-PROJECT-17020001
[Presentation] Analysis of the relationship between EC classification and reaction representations in KEGG RPAIR database2007
- Author(s)
  Shimizu, Y.(Kanehisa, M.)
- Organizer
  The Seventh Annual International Workshopon Bioinformatics and Systems Biology2007(IBSB2007)
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-17020001

1. TAKAGI Toshihisa (30110836)

# of Collaborated Projects: 7 results

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2. SAKAKI Yoshiyuki (10112327)

# of Collaborated Projects: 6 results

# of Collaborated Products: 0 results
3. KUHARA Satoru (00153320)

# of Collaborated Projects: 5 results

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4. MATSUBARA Kenichi (20037394)

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6. 西岡孝明 (80026559)

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7. TAKANAMI Mitsuru (10027013)

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53. 森浩禎 (90182203)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
54. 蓑島伸生 (90181966)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
55. 宮澤三造 (60190774)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
56. NOMURA Nobuo

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
57. AKIYAMA Yutaka

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
58. UGAWA Yoshihiro

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
59. GUELLAEN GEO

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
60. JORDAN BERTR

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
61. DUJON BERNAR

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
62. ROIZES GERAR

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
63. DANCHIN ANTO

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
64. DELABAR JEAN

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
65. GALIBERT FRA

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
66. SLONIMSKI PI

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
67. 浅井潔

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

Kanehisa Minoru 金久 實

KANEHISA Minoru 金久 實

金久 寛 カネヒサ ミノル

金久 實 カネヒサ ミノル

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Backbone Database for Understanding the Biological SystemsPrincipal Investigator

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Integrated Database of Microbial Genomes and Cellular FunctionsPrincipal Investigator

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Biological Knowledge Based on Genome InformationPrincipal Investigator

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ゲノム解析に伴う大量知識情報処理の研究Principal Investigator

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ゲノム解析に伴う大量知識情報処理の研究(総括班)Principal Investigator

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ゲノム解析に伴う大量知識情報処理の研究Principal Investigator

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Large-scale knowledge information processing in genome analysisPrincipal Investigator

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ゲノム解析に伴う大量知識情報処理の研究Principal Investigator

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Kanehisa Minoru 金久實

KANEHISA Minoru 金久實

金久寛カネヒサミノル

金久實カネヒサミノル