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FUNAHASHI Akira  舟橋 啓

… Alternative Names

舟橋 啓  フナハシ アキラ

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Researcher Number 70324548
Other IDs
  • ORCIDhttps://orcid.org/0000-0003-0605-239X
External Links
Affiliation (Current) 2025: 慶應義塾大学, 理工学部(矢上), 教授
Affiliation (based on the past Project Information) *help 2022 – 2025: 慶應義塾大学, 理工学部(矢上), 教授
2016 – 2021: 慶應義塾大学, 理工学部(矢上), 准教授
2009 – 2015: Keio University, 理工学部, 准教授
2009 – 2011: 慶應義塾大学, 理工学部・生命情報学科, 准教授
2010: 慶応義塾大学, 理工学部, 准教授
2002: 三重大, 工学部, 助手
2001: 三重大学, 工学部, 助手
Review Section/Research Field
Principal Investigator
System genome science / Bioinformatics/Life informatics / Medium-sized Section 62:Applied informatics and related fields / Basic Section 43060:System genome science-related / Science and Engineering / Complex systems / 計算機科学
Except Principal Investigator
Medium-sized Section 90:Biomedical engineering and related fields / Basic Section 44010:Cell biology-related / Medium-sized Section 39:Agricultural and environmental biology and related fields … More / Medium-sized Section 53:Organ-based internal medicine and related fields / Insect science / Life / Health / Medical informatics / System genome science / Constructive Systems Biology / ゲノム情報科学 / Bioinformatics/Life informatics / Biological Sciences Less
Keywords
Principal Investigator
機械学習 / 画像解析 / 生体生命情報学 / システムバイオロジー / 深層学習 / セグメンテーション / 発生・分化 / バイオテクノロジー / ハイパフォーマンス・コンピューティング / 生化学ネットワーク … More / 哺乳類胚 / 体外受精 / 細胞追跡 / 細胞系譜 / 教師なし学習 / 画像処理 / コンピュータ制御 / 1分子計測 / モデル化 / 数理モデル / SBML / 数値積分 / 偏微分方程式 / 空間モデル / GPGPU / 並列処理 / 情報工学 / 確率モデルシミュレーション / 生化学シミュレータ / 生体生命システム情報学 / デッドロックフリー / NOWs / 適応型ルーティング / ルーティングアルゴリズム / イレギュラーネットワーク / PCクラスタ … More
Except Principal Investigator
in vitro組織成熟化 / ベイズ的最適化 / 力学刺激 / 機械学習 / 再生医療 / 細胞分裂 / ゲノム / 画像解析 / バイオイメージング / 生体生命情報学 / 細胞・組織 / 自動培養 / hiPSC由来心筋 / In vitro組織成熟化 / サイズスケーリング / 4倍体 / 部位特異的遺伝子導入 / CRISPR / 極限乾燥耐性 / DNA修復 / Global BioImaging (GBI) / 科研費課題 / 科研費取得者 / 支援活動 / トレーニング / 磁気共鳴画像 / 電子顕微鏡 / 光学顕微鏡 / 画像解析支援 / 磁気共鳴画像支援 / 電子顕微鏡支援 / 光学顕微鏡支援 / iPS由来心筋組織 / ベイズ推定 / 単一細胞イメージング / 画像処理 / In vitro 組織成熟化 / ヒトiPS由来心筋組織 / オミックス解析 / 多能性幹細胞 / 深層学習 / 成熟化 / 分化誘導 / 心筋細胞 / ヒトES細胞 / ヒトiPS細胞 / セグメンテーション / 人口知能 / ゲノム編集 / 遺伝子制御ネットワーク / 遺伝子ネットワーク / 遺伝子発現調節 / ゲノム構造 / 乾燥耐性 / 神経化学 / 神経科学 / シグナル伝達 / マイクロコンタクトプリンティング / ベイズ統計 / 流れ / 神経芽腫細胞 / 細胞遊走能 / Wnt3a / 剪断応力 / 液性因子感受性 / 神経芽細胞腫 / 細胞運命決定 / 細胞遊走 / 神経細胞分化 / マイクロ流体デバイス / 中心体 / 細胞骨格 / 胚発生 / 線虫 / バイオインフォマティクス / GPGPU / 並列処理 / 配列解析 / 情報工学 / マルチカラーイメージング / 蛍光タンパク質センサー / 蛍光共鳴エネルギー移動 / 神経回路形成 / 定量生物学 / システム生物学 / 蛍光イメージング / サイクリックGMP / サイクリックAMP / Ca / セカンドメッセンジャー / 成長円錐 / 生体生命システム情報学 / バイオイメージ / 数理モデル / 哺乳類 / 時空間動態 / 初期発生 / バイオイメージインフォマティクス / シミュレーション工学 / 数理工学 / 発生・分化 Less
  • Research Projects

    (23 results)
  • Research Products

    (154 results)
  • Co-Researchers

    (65 People)
  •  生殖補助医療に向けた非染色マウス胚出生予測アルゴリズムの開発Principal Investigator

    • Principal Investigator
      舟橋 啓
    • Project Period (FY)
      2025 – 2027
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 62:Applied informatics and related fields
    • Research Institution
      Keio University
  •  4倍体細胞の幾何特性がもたらす分裂制御脆弱性の解明

    • Principal Investigator
      上原 亮太
    • Project Period (FY)
      2024 – 2026
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 44010:Cell biology-related
    • Research Institution
      Hokkaido University
  •  三次元組織の高度成熟化を自律的に達成する知能化培養システム基盤の創出

    • Principal Investigator
      尾上 弘晃
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 90:Biomedical engineering and related fields
    • Research Institution
      Keio University
  •  Advanced Bioimaging Support

    • Principal Investigator
      伊佐 正, 鍋倉 淳一
    • Project Period (FY)
      2022 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
    • Research Institution
      National Institute for Physiological Sciences
  •  Genome protection and repair mechanisms for the extreme desiccation tolerance, anhydrobiosis

    • Principal Investigator
      黄川田 隆洋
    • Project Period (FY)
      2022 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 39:Agricultural and environmental biology and related fields
    • Research Institution
      National Agriculture and Food Research Organization
  •  Development of a cell tracking algorithm using deep learningPrincipal Investigator

    • Principal Investigator
      Funahashi Akira
    • Project Period (FY)
      2020 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 43060:System genome science-related
    • Research Institution
      Keio University
  •  Development of the evaluation method for differentiation and maturity of human ES, iPS cell-derived cardiomyocytes with deep learning

    • Principal Investigator
      FUJITA Jun
    • Project Period (FY)
      2019 – 2020
    • Research Category
      Grant-in-Aid for Challenging Research (Exploratory)
    • Review Section
      Medium-sized Section 53:Organ-based internal medicine and related fields
    • Research Institution
      Keio University
  •  Efficient maturation of 3D tissues in vitro by intelligent mechanical stimuli

    • Principal Investigator
      Onoe Hiroaki
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Review Section
      Medium-sized Section 90:Biomedical engineering and related fields
    • Research Institution
      Keio University
  •  Development of Robust Segmentation Algorithm using Unsupervised LearningPrincipal Investigator

    • Principal Investigator
      舟橋 啓
    • Project Period (FY)
      2018 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Research Institution
      Keio University
  •  Gene regulatory networks underlying 3-D conformational change in genome associated with anhydrobiosis

    • Principal Investigator
      Kikawada Takahiro
    • Project Period (FY)
      2017 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Insect science
    • Research Institution
      National Agriculture and Food Research Organization
  •  Is Mg ion a novel second messenger for regulating energy metabolism?

    • Principal Investigator
      OKA KOTARO
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (A)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      Keio University
  •  Development of Deep Learning-based Nuclear Detection Algorithm for Mouse EmbryoPrincipal Investigator

    • Principal Investigator
      Funahashi Akira
    • Project Period (FY)
      2016 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      System genome science
    • Research Institution
      Keio University
  •  Construction and Experimental Validation of Mechanical Models for Cell Division

    • Principal Investigator
      Kimura Akatsuki
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Constructive Systems Biology
    • Research Institution
      National Institute of Genetics
  •  Regenerative-medicine oriented controlling of neuronal cell differentiation with shear stress

    • Principal Investigator
      Hiroi Noriko
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      System genome science
    • Research Institution
      Tokyo University of Science, Yamaguchi
      Keio University
  •  Development of High-speed, High-resolution 3D Single-Molecule Measurement SystemPrincipal Investigator

    • Principal Investigator
      Funahashi Akira
    • Project Period (FY)
      2014 – 2015
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      System genome science
    • Research Institution
      Keio University
  •  数理モデル構築を指向した生化学ネットワーク解析環境の実装Principal Investigator

    • Principal Investigator
      舟橋 啓
    • Project Period (FY)
      2013 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Science and Engineering
    • Research Institution
      Keio University
  •  Design and Implementation of high-performance spatial model simulatorPrincipal Investigator

    • Principal Investigator
      FUNAHASHI Akira
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Keio University
  •  超高速生化学ネットワークシミュレーションの基盤構築Principal Investigator

    • Principal Investigator
      舟橋 啓
    • Project Period (FY)
      2011 – 2012
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      Keio University
  •  Informatics and mathematics for In siloco reconstruction of mammalian early embryogenesis

    • Principal Investigator
      KOBAYASHI Tetsuya
    • Project Period (FY)
      2009 – 2013
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Biological Sciences
    • Research Institution
      The University of Tokyo
  •  Systems biological analysis of signal transduction in growth cones

    • Principal Investigator
      OKA Kotaro
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Keio University
  •  Design and Implementation of high-performance sequence analysis environment using GPGPU

    • Principal Investigator
      SUETSUGU Yoshitaka
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      ゲノム情報科学
    • Research Institution
      National Institute of Agrobiological Sciences
  •  Implementation of integrated biochemical network simulatorPrincipal Investigator

    • Principal Investigator
      FUNAHASHI Akira
    • Project Period (FY)
      2009 – 2011
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Bioinformatics/Life informatics
    • Research Institution
      Keio University
  •  PCクラスタにおける適応型ルーティングアルゴリズムに関する研究Principal Investigator

    • Principal Investigator
      舟橋 啓
    • Project Period (FY)
      2001 – 2002
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      計算機科学
    • Research Institution
      Mie University

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 Other

All Journal Article Presentation Book

  • [Book] 機械学習を生命科学に使う!2020

    • Author(s)
      小林 徹也、杉村 薫、舟橋 啓
    • Total Pages
      240
    • Publisher
      羊土社
    • ISBN
      9784758103916
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Book] 組織としての生命2019

    • Author(s)
      舟橋 啓
    • Total Pages
      240
    • Publisher
      慶應義塾大学出版会
    • ISBN
      9784766425987
    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Journal Article] Intercellular interaction mechanisms promote diversity in intracellular ATP concentration in Escherichia coli populations2022

    • Author(s)
      Nakatani Ryo J.、Itabashi Masahiro、Yamada Takahiro G.、Hiroi Noriko F.、Funahashi Akira
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1

    • DOI

      10.1038/s41598-022-22189-x

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Journal Article] Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv112020

    • Author(s)
      Yamada Takahiro G.、Hiki Yusuke、Hiroi Noriko F.、Shagimardanova Elena、Gusev Oleg、Cornette Richard、Kikawada Takahiro、Funahashi Akira
    • Journal Title

      PLOS ONE

      Volume: 15 Issue: 3 Pages: 0230218-0230218

    • DOI

      10.1371/journal.pone.0230218

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17H01511, KAKENHI-PROJECT-18H02217
  • [Journal Article] Neural Differentiation Dynamics Controlled by Multiple Feedback Loops in a Comprehensive Molecular Interaction Network2020

    • Author(s)
      Iwasaki Tsuyoshi、Takiguchi Ryo、Hiraiwa Takumi、Yamada Takahiro G.、Yamazaki Kazuto、Hiroi Noriko F.、Funahashi Akira
    • Journal Title

      Processes

      Volume: 8 Issue: 2 Pages: 166-166

    • DOI

      10.3390/pr8020166

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K06925
  • [Journal Article] Activation of cell migration via morphological changes in focal adhesions depends on shear stress in MYCN-amplified neuroblastoma cells2019

    • Author(s)
      Hiraiwa Takumi、Yamada Takahiro G.、Miki Norihisa、Funahashi Akira、Hiroi Noriko
    • Journal Title

      Journal of The Royal Society Interface

      Volume: 16 Issue: 152 Pages: 20180934-20180934

    • DOI

      10.1098/rsif.2018.0934

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K06925
  • [Journal Article] Predicting the future direction of cell movement with convolutional neural networks2019

    • Author(s)
      Nishimoto Shori、Tokuoka Yuta、Yamada Takahiro G.、Hiroi Noriko F.、Funahashi Akira
    • Journal Title

      PLOS ONE

      Volume: 14 Issue: 9 Pages: e0221245-e0221245

    • DOI

      10.1371/journal.pone.0221245

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Journal Article] 画像解析と深層学習を用いた診断の基礎2019

    • Author(s)
      舟橋 啓, 徳岡 雄大, 大岡 麻耶, 西本 勝利, 山田 貴大, 広井 賀子
    • Journal Title

      病理と臨床

      Volume: 37 Pages: 631-635

    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Journal Article] Deep Learning for Non-Invasive Determination of the Differentiation Status of Human Neuronal Cells by Using Phase-Contrast Photomicrographs2019

    • Author(s)
      Ooka Maya、Tokuoka Yuta、Nishimoto Shori、Hiroi Noriko F.、Yamada Takahiro G.、Funahashi Akira
    • Journal Title

      Applied Sciences

      Volume: 9 Issue: 24 Pages: 5503-5503

    • DOI

      10.3390/app9245503

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Journal Article] ネムリユスリカの培養細胞の乾燥耐性に迫る2019

    • Author(s)
      山田 貴大, 舟橋 啓, 黄川田 隆洋
    • Journal Title

      B&I バイオサイエンスとインダストリー

      Volume: 77 Pages: 310-311

    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Journal Article] Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery2018

    • Author(s)
      Yamada Takahiro G.、Suetsugu Yoshitaka、Deviatiiarov Ruslan、Gusev Oleg、Cornette Richard、Nesmelov Alexander、Hiroi Noriko、Kikawada Takahiro、Funahashi Akira
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1

    • DOI

      10.1038/s41598-018-36124-6

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17H01511, KAKENHI-PROJECT-16K07308
  • [Journal Article] Quantitative analysis of sensitivity to a Wnt3a gradient in determination of the pole-to-pole axis of mitotic cells by using a microfluidic device2018

    • Author(s)
      Hiraiwa Takumi、Nakai Yuichiro、Yamada Takahiro G.、Tanimoto Ryuichi、Kimura Hiroshi、Matsumoto Yoshinori、Miki Norihisa、Hiroi Noriko、Funahashi Akira
    • Journal Title

      FEBS Open Bio

      Volume: 8 Issue: 12 Pages: 1920-1935

    • DOI

      10.1002/2211-5463.12525

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K06925
  • [Journal Article] Quantitative Biology: Dynamics of Living Systems2016

    • Author(s)
      N Hiroi, VM Draviam, A Funahashi
    • Journal Title

      Frontiers in Physiology

      Volume: 7

    • DOI

      10.3389/fphys.2016.00196

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Journal Article] Acceleration of discrete stochastic biochemical simulation using GPGPU2015

    • Author(s)
      Kei Sumiyoshi, Kazuki Hirata, Noriko Hiroi, Akira Funahashi
    • Journal Title

      Frontiers in physiology

      Volume: 6 Pages: 1-1

    • DOI

      10.3389/fphys.2015.00042

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Journal Article] High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes2015

    • Author(s)
      Yuichiro Nakai, Mitsunori Ozeki, Takumi Hiraiwa, Ryuichi Tanimoto, Akira Funahashi, Noriko Hiroi, Atsushi Taniguchi, Shigenori Nonaka, Viviane Boilot, Roshan Shrestha, Joanna Clark, Naoka Tamura, Viji M Draviam, Hiromasa Oku
    • Journal Title

      Review of Scientific Instruments

      Volume: 86 Issue: 1 Pages: 013707-013707

    • DOI

      10.1063/1.4905330

    • Peer Reviewed / Acknowledgement Compliant / Open Access
    • Data Source
      KAKENHI-PROJECT-24300112, KAKENHI-PROJECT-26640132, KAKENHI-PROJECT-26650112
  • [Journal Article] The systems biology simulation core algorithm2013

    • Author(s)
      Keller, R., Dorr, A., Tabira, A., Funahashi, A., Ziller, M.J., Adams, R., Rodriguez, N., Le Novere, N., Hiroi, N., Planatscher, H., Zell, A. and Drager, A.
    • Journal Title

      BMC Systems Biology

      Volume: 7 Issue: 1 Pages: 5-5

    • DOI

      10.1186/1752-0509-7-55

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Journal Article] Physiological intracellular crowdedness is defined by perimeter to area ratio of subcellular compartments2012

    • Author(s)
      N.Hiroi, T.Okuhara, T.Kubojima, K.Iba, A.Tabira, S.Yamashita, Y.Okada, T.J. Kobayashi,A. Funahashi
    • Journal Title

      Frontiers in Physiology

      Volume: Vol.3 Pages: 293-293

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116006
  • [Journal Article] Physiological intracellular crowdedness is defined by perimeter to area ratio of subcellular compartments2012

    • Author(s)
      Noriko Hiroi, Takahiro Okuhara, Takeshi Kubojima, Keisuke Iba, Akito Tabira, Shuji Yamashita, Yasunori Okada, Tetsuya J. Kobayashi, Akira Funahashi
    • Journal Title

      Frontiers in Physiology

      Volume: 7 Pages: 293-293

    • DOI

      10.3389/fphys.2012.00293

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-21116006
  • [Journal Article] 細胞シミュレータCell Designerの設計と実装2010

    • Author(s)
      舟橋啓、松岡由希子、上樂明也、瀧沢大夢、広井賀子、Samik Ghosh, 菊池紀広、北野宏明
    • Journal Title

      計測と制御

      Volume: Vol.49、No.8 Pages: 531-536

    • NAID

      10026585798

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Journal Article] 細胞シミュレータCellDesignerの設計と実装2010

    • Author(s)
      舟橋啓
    • Journal Title

      計測と制御

      Volume: 49 Pages: 531-536

    • NAID

      10026585798

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Journal Article] The Systems Biology Graphical Notation2009

    • Author(s)
      Novere, N. L., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K., Aladjem, M. I., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villeger, A., Boyd, S. E., Calzone, L., Courtot,M., Dogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K., and Kitano, H.
    • Journal Title

      Nature Biotechnology

      Volume: Vol.27, No.8 Pages: 734-741

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] システム生物学における計算機基盤の構築2024

    • Author(s)
      舟橋 啓
    • Organizer
      定量生物学の会第十一回年会
    • Data Source
      KAKENHI-PROJECT-22H04926
  • [Presentation] 染色体倍加細胞の運命決定機構解明に向けた大規模系譜解析2023

    • Author(s)
      大関 彩貴、塚田 祐基、上原 亮太、楊 光、猪子 雅哉、舟橋 啓
    • Organizer
      第1回 倍数性研究会
    • Data Source
      KAKENHI-PROJECT-22H04926
  • [Presentation] バッチベイズ最適化による in vitro 骨格筋組織の成熟化条件の探索システム2023

    • Author(s)
      宮田大輝,笠原啓太郎,徳岡雄太,田口勇仁,山田貴大,倉科祐太,舟橋啓,尾上弘晃
    • Organizer
      化学とマイクロ・ナノシステム学会第48回研究会
    • Data Source
      KAKENHI-PROJECT-23H00555
  • [Presentation] Exploring autonomous optimal experimental conditions for in vitro tissue maturation with batch Bayesian optimization2023

    • Author(s)
      Daiki Miyata, Keitaro Kasahara, Takahiro Yamada, Yuta Tokuoka, Yujin Taguchi, Yuta Kurashina, Akira Funahashi, Hiroaki Onoe
    • Organizer
      The 22nd International Conference on Solid-State Sensors, Actuators and Microsystems (Transducers 2023)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23H00555
  • [Presentation] Batch baysian optimization for in vitro skeletal muscle tissue maturation with multiple stimulation parameters2023

    • Author(s)
      Daiki Miyata, Keitaro-Kasahra, Yuta Tokuoka, Yujin Taguchi, Takahiro Yamada, Akira Funahashi, Futa Kurashina, Hiroaki Onoe
    • Organizer
      The 27th International Conference on Miniaturized Systems for Chemistry and Life Science (microTAS 2023)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23H00555
  • [Presentation] Automatic exploration system of experimental conditions for in-vitro tissue maturation with batch Bayesian optimization2023

    • Author(s)
      Daiki Miyata, Keitaro Kasahara, Yuta Tokuoka, Yujin Taguchi, Takahiro Yamada, Akira Funahashi, Yuta Kurashina, Hiroaki Onoe
    • Organizer
      The 18th Annual International Conference on Micro/Nano Engineered and Molecular Systems (NEMS 2023)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23H00555
  • [Presentation] 深層学習による定量的な体外受精胚評価手法の開発2022

    • Author(s)
      舟橋 啓
    • Organizer
      情報計測オンラインセミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 深層学習が駆動するバイオ画像解析の新展開2022

    • Author(s)
      舟橋 啓
    • Organizer
      山口大学 AIシステム医学医療研究教育センター セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 生物学者が機械学習を導入するための基礎知識2022

    • Author(s)
      舟橋 啓
    • Organizer
      第165回日本獣医学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-22H04926
  • [Presentation] 生物学者が機械学習を導入するための基礎知識2022

    • Author(s)
      舟橋 啓
    • Organizer
      第165回日本獣医学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 深層学習が駆動する定量生物学の新展開2021

    • Author(s)
      舟橋 啓
    • Organizer
      データ駆動生物学ワークショップ
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 深層学習と医学研究2021

    • Author(s)
      舟橋 啓
    • Organizer
      日本乳腺人工知能研究会
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] Cap Trap RNA-Seqを用いた乾眠性ユスリカのトランスクリプトーム解析2021

    • Author(s)
      吉田祐貴,Kozlova Olga, 伊藤昌可,山田貴大, 田上道平,Alexander Cherkasov, Ruslan Deviatiiarov, 徳本翔子,宮田佑吾,Richard Cornette, 舟橋啓, 冨田勝,Oleg Gusev,黄川田隆洋
    • Organizer
      生命情報科学若手の会
    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Presentation] 機械学習と定量生物学2021

    • Author(s)
      舟橋 啓
    • Organizer
      定量生物学の会 夏の会2021
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] Electrical field chamber with dynamically adaptable stimulifor myocyte orientation during cultivation2021

    • Author(s)
      Sergio Robert Molina Ramirez, Takahiro Yamada, Akira Funahashi, Hiroaki Onoe
    • Organizer
      The 34th International Conference on Micro Electro Mechanical Systems (MEMS 2021)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-19H01178
  • [Presentation] 深層学習が駆動するバイオ画像解析の新展開2021

    • Author(s)
      舟橋 啓
    • Organizer
      山口大学 AIシステム医学医療研究教育センター セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] CellDesigner: A modeling tool for biochemical networks2020

    • Author(s)
      Funahashi, A.
    • Organizer
      Computational Modeling in Biology Network 2020 (COMBINE 2020)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 機械学習による細胞動態解析2020

    • Author(s)
      西本 勝利, 徳岡 雄大, 山田 貴大, 広井 賀子, 舟橋 啓
    • Organizer
      第67回応用物理学会春季学術講演会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] ライブセルイメージングと深層学習を用いた胚発生過程定量システムの構築2020

    • Author(s)
      舟橋 啓
    • Organizer
      第81回応用物理学会秋季学術講演会
    • Invited
    • Data Source
      KAKENHI-PROJECT-20H03244
  • [Presentation] 自己符号化器による特徴抽出を利用した多細胞種セグメンテーション手法の提案2019

    • Author(s)
      小林 佑也, 徳岡 雄大, 大岡 麻耶, 西本 勝利, 山田 貴大, 広井 賀子, 舟橋 啓
    • Organizer
      科研費新学術 Resonance Bio 全体会議 2019 Buy Me! Discover Resonance in the CHAOS.
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 生命現象の定量解析に資するConvolutional Neural Networksを基盤とした顕微鏡画像解析手法の開発2019

    • Author(s)
      徳岡雄大, 山田貴大, 広井賀子, 小林徹也, 山縣一夫, Cornette Richard, 黄川田隆洋, 舟橋啓
    • Organizer
      定量生物学の会 第九回年会
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 不妊治療に資する深層学習を用いた初期胚定量評価手法の開発2019

    • Author(s)
      徳岡雄大, 山田貴大, 広井賀子, 小林徹也, 山縣一夫, 舟橋啓
    • Organizer
      第18回日本再生医療学会総会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Deep Learning-based quantitative evaluation of early embryo in infertility treatments2019

    • Author(s)
      Tokuoka, Y., Yamada, T. G., Hiroi, N. F., Kobayashi, T. J., Yamagata, K., Funahashi, A.
    • Organizer
      The 20th International Conference on Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] CellDesigner2019

    • Author(s)
      Funahashi, A.
    • Organizer
      COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 深層学習が駆動するPv11生存細胞スクリーニング2019

    • Author(s)
      徳岡 雄大, 山田 貴大, Richard Cornette, 広井 賀子, 黄川田 隆洋, 舟橋 啓
    • Organizer
      エンジニアリングネットワーク・ワークショップ - 生物のもつ耐性機能と工学の融合 -
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 人工知能と医学研究2019

    • Author(s)
      舟橋 啓
    • Organizer
      群馬大学総合外科学講座 Translational Researchセミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 機械学習による画像分類2019

    • Author(s)
      舟橋 啓, 徳岡 雄大
    • Organizer
      AIによる生物画像解析トレーニングコース
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Inference of transcriptional regulatory network driven by desiccation and rehydration in Polypedilum vanderplanki2019

    • Author(s)
      Hiki, Yusuke, Yamada G. Takahiro, Kozlova, Olga, Cornette Richard, Gusev Oleg., Kikawada Takahiro, Funahashi Akira.
    • Organizer
      Moscow Conference on Computational Molecular Biology 2019
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Presentation] 畳み込みニューラルネットワークを用いた神経分化判別および特徴量解析2019

    • Author(s)
      舟橋 啓
    • Organizer
      山口大学 AIシステム医学医療研究教育センター セミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 正確な情報伝達を利用したON/OFF遺伝子制御がPv11細胞の乾燥しても死なない仕組みのカギを握る2019

    • Author(s)
      山田 貴大, 比企 佑介, 広井 賀子, Elena Shagimardanova, Oleg Gusev, Richard Cornette, 黄川田 隆洋, 舟橋 啓
    • Organizer
      定量生物学の会 北海道キャラバン 2019
    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Presentation] 機械学習による画像分類2019

    • Author(s)
      舟橋 啓, 徳岡 雄大
    • Organizer
      AIによる生物画像解析トレーニングコース
    • Invited
    • Data Source
      KAKENHI-PROJECT-19H01178
  • [Presentation] Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development2019

    • Author(s)
      Funahashi, A.
    • Organizer
      Seminar at University of Nottingham
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 深層学習が駆動するPv11生存細胞スクリーニング系の構築2019

    • Author(s)
      徳岡雄大, 山田貴大, 広井賀子, Cornette Richard, 黄川田隆洋, 舟橋啓
    • Organizer
      科研費新学術 Resonance Bio 全体会議 2019 Buy Me! Discover Resonance in the CHAOS.
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] Development of multi-cell-type segmentation algorithm by unsupervised feature learning2019

    • Author(s)
      Kobayashi, Y., Tokuoka, Y., Nishimoto, S., Ooka, M., Hiroi, N., Takahiro G. Yamada and Funahashi, A.
    • Organizer
      Resonance Bio International Symposium
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 画像解析による不妊治療応用を目指した深層学習アルゴリズムの提案: 非染色マウス初期胚の細胞核セグメンテーションおよび多様な生物種へのアルゴリズムの適応2019

    • Author(s)
      徳岡 雄大, 山田 貴大, 小林 徹也, 山縣 一夫, 舟橋 啓
    • Organizer
      定量生物学の会 北海道キャラバン 2019
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 不妊治療に資する深層学習を用いた初期胚定量評価手法の開発2019

    • Author(s)
      舟橋 啓
    • Organizer
      Cardiovascular Meeting
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 一細胞系譜解析による低グルコース培養下大腸菌集団のATP 濃度多様性生成機構の解明2019

    • Author(s)
      中谷 諒, 板橋 正寛, 山田 貴大, 広井 賀子, 舟橋 啓
    • Organizer
      定量生物学の会 北海道キャラバン 2019
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Mechanical Modeling of Cell Migration During the Early Embryogenesis of C. elegans to Reveal the Mechanism for Controlling Cell Arrangement2019

    • Author(s)
      Motomuro, M., Yamamoto, K., Yamada, T. G., Hiroi, N. F., Kimura, A. and Funahashi, A.
    • Organizer
      The Seventh Annual Winter Q-Bio Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 腫瘍内不均一性を考慮した予後の予測に向けた深層学習ベースの組織画像解析2019

    • Author(s)
      舟橋 啓
    • Organizer
      群馬大学数理データ科学教育研究センター主催第1回レギュラトリー サイエンスセミナー
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 人工知能と医学研究2019

    • Author(s)
      舟橋 啓
    • Organizer
      群馬大学総合外科学講座 Translational Researchセミナー
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 神経分化過程における流れの寄与の解析2019

    • Author(s)
      中村善次、東恩納麻州、平岩巧、山田貴大、広井賀子、舟橋啓
    • Organizer
      定量生物学の会 第9回年会
    • Data Source
      KAKENHI-PROJECT-15K06925
  • [Presentation] CellDesigner: A modeling tool for biochemical networks2019

    • Author(s)
      Funahashi, A.
    • Organizer
      COMBINE 2019
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 畳み込みニューラルネットワークを用いた細胞の移動方向予測および画像特徴解析2018

    • Author(s)
      西本 勝利, 徳岡 雄大, 広井 賀子, 舟橋 啓
    • Organizer
      科学研究費補助金新学術領域「レゾナンスバイオ: 共鳴誘導で革新するバイオイメージング」平成30年度班会議
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 自己符号化器による特徴抽出を利用した多細胞種セグメンテーション手法の提案2018

    • Author(s)
      小林 佑也, 徳岡 雄大, 大岡 麻耶, 西本 勝利, 広井 賀子, 舟橋 啓
    • Organizer
      科学研究費補助金新学術領域「レゾナンスバイオ: 共鳴誘導で革新するバイオイメージング」平成30年度班会議
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development2018

    • Author(s)
      Tokuoka, Y., Yamada, TG., Hiroi, NF., Kobayashi, TJ., Yamagata, K. and Funahashi, A.
    • Organizer
      19th International Conference on Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 深層学習による非侵襲的Pv11細胞生存率測定法の構築2018

    • Author(s)
      徳岡 雄大, 山田 貴大, 広井 賀子, Richard Cornette, 黄川田 隆洋, 舟橋 啓
    • Organizer
      第2回慶應ライフサイエンスシンポジウム
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] Classification Algorithm of Neuronal Differentiation using Convolutional Neural Network2018

    • Author(s)
      Maya Ooka, Yuta Tokuoka, Takumi Hiraiwa, Takahiro G Yamada, Noriko F Hiroi, Akira Funahashi
    • Organizer
      Keio University International Symposium on Advanced Technologies for Mechano-biology and Regenerative Medicine
    • Int'l Joint Research
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] ディープラーニングを用いたマウス発生過程における定量的指標の獲得2018

    • Author(s)
      舟橋 啓
    • Organizer
      第36回 日本受精着床学会総会・学術講演会
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 深層学習が明らかにする細胞顕微鏡画像解析の新展開2018

    • Author(s)
      舟橋 啓
    • Organizer
      自然科学研究機構 新分野創成センター合同シンポジウム「分野横断・分野融合研究による生命創成を探究する新しい科学の創成」
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Predicting the future direction of cell movement with convolutional neural networks2018

    • Author(s)
      Shori Nishimoto, Yuta Tokuoka, Takahiro G Yamada, Noriko Hiroi, Akira Funahashi
    • Organizer
      19th International Conference on Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] CellDesigner - Modeling Tool for Biochemical Networks2018

    • Author(s)
      Funahashi, A.
    • Organizer
      COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] マウス発生過程の定量的指標獲得を目指した深層学習による3次元蛍光顕微鏡画像セグメンテーションアルゴリズムの開発2018

    • Author(s)
      徳岡 雄大, 山田 貴大, 広井 賀子, 小林 徹也, 山縣 一夫, 舟橋 啓
    • Organizer
      科学研究費補助金新学術領域「レゾナンスバイオ: 共鳴誘導で革新するバイオイメージング」平成30年度班会議
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] 自己符号化器による特徴抽出を利用した多細胞種セグメンテーション手法の提案2018

    • Author(s)
      小林 佑也, 徳岡 雄大, 大岡 麻耶, 西本 勝利, 山田 貴大, 広井 賀子, 舟橋 啓
    • Organizer
      第2回慶應ライフサイエンスシンポジウム
    • Data Source
      KAKENHI-PUBLICLY-18H04742
  • [Presentation] Segmenting Four-dimensional Fluorescence Microscopic Image using Convolutional Neural Network2017

    • Author(s)
      A Funahashi
    • Organizer
      Life of Genomes 2017
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 細胞シミュレーションライブラリLibSBMLSim-v2の設計と実装2017

    • Author(s)
      舟橋 啓
    • Organizer
      定量生物学の会 第8回年会
    • Place of Presentation
      自然科学研究機構 岡崎カンファレンスセンター (愛知県・岡崎市)
    • Year and Date
      2017-01-08
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] リアルタイム制御が導く定量生物学の未来2017

    • Author(s)
      舟橋 啓
    • Organizer
      定量生物学のNEXT CHALLENGE
    • Place of Presentation
      ホテルたつき会議室 (愛知県・蒲郡市)
    • Year and Date
      2017-01-09
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Segmenting Four-dimensional Fluorescence Microscopic Image using Convolutional Neural Network2017

    • Author(s)
      A Funahashi
    • Organizer
      Integrated Open Systems Unit Seminar
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] 時系列 RNA-seq データに基づくネムリユスリカ乾燥耐性機構の転写制御ネット ワークの同定2017

    • Author(s)
      山田 貴大, 末次 克行, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, 広井 賀子, 黄川田 隆洋, 舟橋 啓
    • Organizer
      第1回慶應ライフサイエンスシンポジウム
    • Data Source
      KAKENHI-PROJECT-17H01511
  • [Presentation] 4次元画像解析による核同定アルゴリズムの構築2016

    • Author(s)
      舟橋 啓
    • Organizer
      ネムリユスリカワークショップ2016
    • Place of Presentation
      東京大学検見川セミナーハウス (千葉県・千葉市)
    • Year and Date
      2016-07-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Influence of cellular aspect ratio to pole-pole distance during anaphase2016

    • Author(s)
      Shohei Tada, Kazunori Yamamoto, Yusuke Yoshimi, Mitsunori Ozeki, Takumi Hiraiwa, Noriko Hiroi, Akatsuki Kimura, Akira Funahashi
    • Organizer
      NIG Iternational Symposium 2016 Japan Q-Bio week, Mishima Symposium
    • Place of Presentation
      国立遺伝学研究所、三島
    • Year and Date
      2016-01-12
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15KT0083
  • [Presentation] Design and Implementation of High Performance Biochemical Simulator2016

    • Author(s)
      Akira Funahashi
    • Organizer
      LibSBMLSim & Flint Hackathon
    • Place of Presentation
      沖縄科学技術大学院大学 (沖縄県・恩納村)
    • Year and Date
      2016-11-21
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Determining the position of cleavage furrow at cytokinesis using hydrodynamic simulation2016

    • Author(s)
      Yusuke Yoshimi, Shohei Tada, Noriko Hiroi, Akatsuki Kimura and Akira Funahashi
    • Organizer
      NIG Iternational Symposium 2016 Japan Q-Bio week, Mishima Symposium
    • Place of Presentation
      国立遺伝学研究所、三島
    • Year and Date
      2016-01-12
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15KT0083
  • [Presentation] CellDesigner: Modeling Tool for Biochemical Networks2016

    • Author(s)
      Akira Funahashi
    • Organizer
      COMBINE Tutorial Modelling and Simulation Tools in Systems Biology
    • Place of Presentation
      Barcelona (Spain)
    • Invited / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16H04731
  • [Presentation] Development of 3D single particle tracking system with an electrically tunable lens2016

    • Author(s)
      Yuichiro Nakai, Takumi Hiraiwa, Ryuichi Tanimoto, Mitsunori Ozeki, Atsushi Taniguchi, Shigenori Nonaka, Hiromasa Oku, Viji Draviam, Noriko Hiroi, Akira Funahashi
    • Organizer
      NIG International Symposium: Force, Information and Dynamics: X factors shaping living systems
    • Place of Presentation
      東京大学(東京・目黒区)
    • Year and Date
      2016-01-09
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-26640132
  • [Presentation] Fabrication method to a high resolution control in the space of cell culturing environment with microfluidic system.2014

    • Author(s)
      Hiraiwa, T., Kimura, T., Takenaka, Y., Tanamoto, R., Ota, H., Kimura, H., Taguchi, Y., Miki, N., Matsumoto, Y., Oka, K., Funahashi, A. and Hiroi, N.
    • Organizer
      Micro Eloctro Mechanical Systems (MEMS)
    • Place of Presentation
      San Francisco, USA
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] CellDesigner2014

    • Author(s)
      Akira Funahashi, Noriko Hiroi
    • Organizer
      Modelling and Simulation of Biological Models
    • Place of Presentation
      Melbourne, Australia
    • Year and Date
      2014-09-14
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] CellDesigner: A process diagram editor for gene-regulatory and biochemical networks.2014

    • Author(s)
      Funahashi, A.
    • Organizer
      Advanced Lecture Course on Systems Biology
    • Place of Presentation
      Innsbruck, Austria
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104524
  • [Presentation] CellDesigner: A process diagram editor for gene-regulatory and biochemical networks2013

    • Author(s)
      Funahashi, A. and Hiroi, N.
    • Organizer
      Computational and Mathematical Biology Course
    • Place of Presentation
      Okinawa, Japan
    • Invited
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Development of microfluidic system for high resolution control of cell culturing environment2013

    • Author(s)
      Hiraiwa, T., Kimura, T., Tanamoto, R., Ota, H., Kimura, H., Taguchi, Y., Miki, N., Matsumoto, Y., Oka, K., Funahashi, A. and Hiroi, N.
    • Organizer
      International Conference on Systems Biology 2013 (ICSB2013)
    • Place of Presentation
      Copenhagen, Denmark
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Design and Implementation of CellDesigner2013

    • Author(s)
      Funahashi, A., Matsuoka, Y., Ghosh, S., Hiroi, N. and Kitano, H.
    • Organizer
      International Workshop on Quantitative Biology 2013
    • Place of Presentation
      Osaka, Japan
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Development of microfluidic system for high resolution control of long-term cell culturing environment2013

    • Author(s)
      Hiraiwa, T., Kimura, T., Tanamoto, R., Ota, H., Kimura, H., Taguchi, Y., Miki, N., Matsumoto, Y., Oka, K., Funahashi, A. and Hiroi, N.
    • Organizer
      International Workshop on Quantitative Biology 2013
    • Place of Presentation
      Osaka, Japan
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Development of High-speed 3D imaging system with electrically tunable lenses for deeper probing of subcellular structures2013

    • Author(s)
      Nakai, Y., Tamura, N., Hiraiwa, T., Okuhara, T., Draviam, V.M., Funahashi, A. and Hiroi, N.
    • Organizer
      International Workshop on Quantitative Biology 2013
    • Place of Presentation
      Osaka, Japan
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] A neural differentiation model of pluripotent stem cells2013

    • Author(s)
      Takiguchi, R., Iwasaki, T., Hiraiwa, T., Kimura, T., Yamazaki, K., Funahashi, A. and Hiroi, N.
    • Organizer
      International Conference on Systems Biology 2013 (ICSB2013)
    • Place of Presentation
      Copenhagen, Denmark
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] CellDesigner 4.3: A Modeling Tool for Biochemical Networks.2013

    • Author(s)
      Funahashi, A.
    • Organizer
      The 2nd HD Physiology International Symposium: Integrative Multi-level Systems Biology for In Silico Cardiology and Pharmacokinetics
    • Place of Presentation
      Tokyo, Japan
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104524
  • [Presentation] SBGN support in CellDesigner.2013

    • Author(s)
      Funahashi, A.
    • Organizer
      9th SBGN workshop
    • Place of Presentation
      Edinburgh, UK
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-25104524
  • [Presentation] CellDesigner: A process diagram editor for gene-regulatory and biochemical networks.2013

    • Author(s)
      Funahashi, A. and Hiroi, N.
    • Organizer
      CellDesigner Workshop
    • Place of Presentation
      Melbourne, Australia
    • Invited
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Q-BioJP : Japanese Society for Quantitative Biology2013

    • Author(s)
      舟橋啓
    • Organizer
      First Annual Winter Q-Bio Meeting
    • Place of Presentation
      ハワイ・アメリカ
    • Year and Date
      2013-02-20
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Setting up quantitative models in CellDesigner2013

    • Author(s)
      Funahashi, A. and Hiroi, N.
    • Organizer
      Tutorials at international Conference on Systems Biology 2013 (ICSB2013)
    • Place of Presentation
      Copenhagen, Denmark
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Coarse grain parallelization and acceleration of biochemical ODE simulation using GPGPU2012

    • Author(s)
      Akira Funahashi
    • Organizer
      NOLTA 2012
    • Place of Presentation
      Majorca, Spain
    • Year and Date
      2012-10-22
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] CellDesigner 4.2 : A Modeling Tool for Biochemical Networks2012

    • Author(s)
      Akira Funahashi
    • Organizer
      Garuda 7 Workshop
    • Place of Presentation
      Okinawa, Japan(招待講演)
    • Year and Date
      2012-02-22
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] 定量生物に効く数値計算2012

    • Author(s)
      舟橋啓
    • Organizer
      定量生物学の会第4回年会
    • Place of Presentation
      名古屋大学野依記念学術交流館
    • Year and Date
      2012-01-07
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 生化学ネットワーク解析環境CellDesignerの設計と実装2012

    • Author(s)
      舟橋啓
    • Organizer
      定量生物学の会第4回年会
    • Place of Presentation
      名古屋大学野依記念学術交流館
    • Year and Date
      2012-01-08
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Acceleration of Stochastic Biochemical Simulation by GPU2012

    • Author(s)
      Kei Sumiyoshi, Kazuki Hirata, Noriko Hiroi, Akira Funahashi
    • Organizer
      The 1st HD Physiology International Symposium : Integrative Multi-level Systems Biology for In Silico Cardiology and Pharmacokinetics
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2012-01-21
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] CellDesigner 4.2 : A Modeling Tool for Biochemical Networks2012

    • Author(s)
      Akira Funahashi
    • Organizer
      The 1st HD Physiology International Symposium : Integrative Multi-level Systems Biology for In Silico Cardiology and Pharmacokinetics
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2012-01-20
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] CellDesigner2012

    • Author(s)
      Akira Funahashi
    • Organizer
      ICSB/COMBINE Tutorial 2012
    • Place of Presentation
      Tronto, Canada
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] Design and Implementation of GPU accelerated biochemical ODE simulator2012

    • Author(s)
      Kazushige Nakamura, Kazuki Hirata, Noriko Hiroi, Akira Funahashi
    • Organizer
      The 1st HD Physiology International Symposium : Integrative Multi-level Systems Biology for In Silico Cardiology and Pharmacokinetics
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2012-01-21
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] CellDesigner 4.2: A Modeling Tool for Biochemical Networks.2012

    • Author(s)
      Akira Funahashi
    • Organizer
      The 4th Global COE International Symposium on Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      2012-11-21
    • Invited
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] CellDesigner2011

    • Author(s)
      A. Funahashi
    • Organizer
      Garuda 4 workshop
    • Place of Presentation
      沖縄科学技術研究基盤整備機構
    • Year and Date
      2011-02-24
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Implementation of spatial simulator and its SBML support2011

    • Author(s)
      Akira Funahashi
    • Organizer
      The Computational Modeling in Biology Network (COMBINE) 2011
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-09-04
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Implementation of spatial simulator and its SBML support2011

    • Author(s)
      A. Funahashi
    • Organizer
      The Computational Modeling in Biology Network(COMBINE 2012)
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-09-04
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner : A Process Diagram Editor for Gene-Regulatory and Biochemical Networks2011

    • Author(s)
      A. Funahashi
    • Organizer
      12^<th> International Conference on Systems Biology(ICSB 2011)
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-08-28
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] An interactive equation based model builder2011

    • Author(s)
      A. Funahashi
    • Organizer
      The Computational Modeling in Biology Network(COMBINE 2011)
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-09-04
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] An interactive equation-based model builder2011

    • Author(s)
      Akira Funahashi
    • Organizer
      Garuda 6
    • Place of Presentation
      Esch-sur-Alzette, Luxembourg(招待講演)
    • Year and Date
      2011-09-29
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner2011

    • Author(s)
      Funahashi, A.
    • Organizer
      FEBS SystemsX SysBio2010
    • Place of Presentation
      オーストリア・インスブルック
    • Year and Date
      2011-02-27
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] An interactive equation-based model builder2011

    • Author(s)
      Akira Funahashi
    • Organizer
      The Computational Modeling in Biology Network (COMBINE) 2011
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-09-04
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner : A Process Diagram Editor for Gene-Regulatory and Biochemical Networks2011

    • Author(s)
      Akira Funahashi
    • Organizer
      12^<th> International Conference on Systems Biology (ICSB 2011)
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2011-08-28
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner2011

    • Author(s)
      Funahashi, A.
    • Organizer
      Garuda 4 workshop
    • Place of Presentation
      沖縄・沖縄科学技術研究基盤整備機構
    • Year and Date
      2011-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner Plugin2011

    • Author(s)
      Funahashi, A.
    • Organizer
      Garuda 4 workshop
    • Place of Presentation
      沖縄・沖縄科学技術研究基盤整備機構
    • Year and Date
      2011-02-24
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner2011

    • Author(s)
      A. Funahashi
    • Organizer
      FEBS SystemsX Sysbio2010
    • Place of Presentation
      Innsbruck, Austria
    • Year and Date
      2011-02-27
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] GPGPUを用いたバイオイメージの高速画像処理2011

    • Author(s)
      舟橋啓, 太田信之, 小林徹也, 広井賀子
    • Organizer
      バイオイメージ・インフォマティクスワークショップ2011
    • Place of Presentation
      理化学研究所横浜研究所
    • Year and Date
      2011-01-28
    • Data Source
      KAKENHI-PLANNED-21116006
  • [Presentation] CellDesigner Plugin2011

    • Author(s)
      A. Funahashi
    • Organizer
      Garuda 4 workshop
    • Place of Presentation
      沖縄科学技術研究基盤整備機構
    • Year and Date
      2011-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner 4.2 : A Modeling Tool for Biochemical Networks2011

    • Author(s)
      Akira Funahashi
    • Organizer
      The 4th Global COE International Symposium on Physiome and Systems Biology for Integrated Life Sciences and Predictive Medicine
    • Place of Presentation
      Osaka, Japan(招待講演)
    • Year and Date
      2011-11-22
    • Data Source
      KAKENHI-PUBLICLY-23136513
  • [Presentation] An interactive equation based model builder2011

    • Author(s)
      A. Funahashi
    • Organizer
      Garuda 6
    • Place of Presentation
      Luxembourg
    • Year and Date
      2011-09-29
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner2010

    • Author(s)
      A. Funahashi
    • Organizer
      Garuda One workshop
    • Place of Presentation
      沖縄科学技術研究基盤整備機構
    • Year and Date
      2010-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] MULTI-GPUsによる高速配列解析環境の構築2010

    • Author(s)
      平田一樹, 太田信行, 上樂明也, 広井賀子, 舟橋啓, 末次克行
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Year and Date
      2010-12-09
    • Data Source
      KAKENHI-PROJECT-21510217
  • [Presentation] CellDesigner4.1 : A Process Diagram Editor for Gene Regulatory and Biochemical Networks2010

    • Author(s)
      Funahashi, A.
    • Organizer
      11^<th> International Conference on Systems Biology
    • Place of Presentation
      イギリス・エジンバラ
    • Year and Date
      2010-10-10
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 生化学ネットワーク解析環境CellDesignerの設計と実装2010

    • Author(s)
      舟橋啓
    • Organizer
      定量生物学の会 第3回年会
    • Place of Presentation
      東京大学生産技術研究所
    • Year and Date
      2010-11-27
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner4. 1 : A Process Diagram Editor for Gene-Regulatory and Biochemical Networks2010

    • Author(s)
      A. Funahashi
    • Organizer
      11^<th> International Conference on Systems Biology(ICSB 2010)
    • Place of Presentation
      Edinburgh, UK
    • Year and Date
      2010-10-10
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 数理モデルによる神経成長円錐の運動機構解析2010

    • Author(s)
      佐久間逸, 山崎亮輔, 新野祐介, 広井賀子, 舟橋啓, 岡浩太郎
    • Organizer
      定量生物学の会第3回年会
    • Place of Presentation
      東京大学生産技術研究(東京)
    • Year and Date
      2010-11-28
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] CellDesigner Plugin2010

    • Author(s)
      A. Funahashi
    • Organizer
      Garuda One workshop
    • Place of Presentation
      沖縄科学技術研究基盤整備機構
    • Year and Date
      2010-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] MULTI-GPUsによる高速配列解析環境の構築2010

    • Author(s)
      平田一樹,太田信行,上樂明也,広井賀子,舟橋啓,末次克行
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2010-12-09
    • Data Source
      KAKENHI-PROJECT-21510217
  • [Presentation] 生化学ネットワーク解析環境CellDesignerの設計と実装2010

    • Author(s)
      舟橋啓
    • Organizer
      定量生物学の会第2回年会
    • Place of Presentation
      大阪・大阪大学
    • Year and Date
      2010-01-10
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner plugin2010

    • Author(s)
      Funahashi, A.
    • Organizer
      Garuda One
    • Place of Presentation
      沖縄・沖縄科学技術研究基盤整備機構
    • Year and Date
      2010-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 数理モテルによる神経成長円錐の運動機構解析2010

    • Author(s)
      佐久間逸, 山崎亮輔, 新野祐介, 広井賀子, 舟橋啓, 岡浩太郎
    • Organizer
      定量生物学の会第3回年会
    • Place of Presentation
      東京大学生産技術研究(東京)
    • Year and Date
      2010-11-28
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] CellDesigner2010

    • Author(s)
      Funahashi, A.
    • Organizer
      Garuda One
    • Place of Presentation
      沖縄・沖縄科学技術研究基盤整備機構
    • Year and Date
      2010-02-23
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 画像解析によるin vivo細胞内粒子運動の統計的性質の解析2010

    • Author(s)
      小林徹也, 舟橋啓, 春本敏之, 太田信之, 上田泰己, 上村匡
    • Organizer
      MIRU2010 Workshop:細胞内画像処理
    • Place of Presentation
      釧路・釧路市国際交流センター
    • Year and Date
      2010-07-26
    • Data Source
      KAKENHI-PLANNED-21116006
  • [Presentation] Mathematical analysis of movement mechanism of nerve growth cone2010

    • Author(s)
      S. Sakuma, R. Yamazaki, Y. Niino, N. Hiroi, A. Funahashi and K. Oka
    • Organizer
      11^<th> International Conference on Systems Biology
    • Place of Presentation
      Edinburgh International Conference Centre, Edinburgh(UK)
    • Year and Date
      2010-10-12
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] マイクロ流体デバイス自動制御システムの構築2010

    • Author(s)
      広井賀子・舟橋啓
    • Organizer
      定量生物学の会 第2回年会
    • Place of Presentation
      大阪大学吹田キャンパスコンベンションセンター
    • Year and Date
      2010-01-10
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] Mathematical analysis of movement mechanism of nerve growth cone2010

    • Author(s)
      S.Sakuma, R.Yamazaki, Y.Niino, N.Hiroi, A.Funahashi, K.Oka
    • Organizer
      11^<th> International Conference on Systems Biology
    • Place of Presentation
      Edinburgh International Conference Centre, Edinburgh (UK)
    • Year and Date
      2010-10-12
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] マイクロ流体デバイス自動制御システムの構築2010

    • Author(s)
      広井賀子, 舟橋啓
    • Organizer
      定量生物学の会第2回年会
    • Place of Presentation
      大阪大学吹田キャンパスコンベンションセンター(大阪)
    • Year and Date
      2010-01-10
    • Data Source
      KAKENHI-PROJECT-21300112
  • [Presentation] CellDesigner2009

    • Author(s)
      A. Funahashi
    • Organizer
      Winter School on Computational Modeling in Biology
    • Place of Presentation
      沖縄科学技術研究基盤整備機構
    • Year and Date
      2009-12-17
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner2009

    • Author(s)
      Funahashi, A.
    • Organizer
      Winter School on Computational Modeling in Biology
    • Place of Presentation
      沖縄・沖縄科学技術研究基盤整備機構
    • Year and Date
      2009-12-17
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner4.12009

    • Author(s)
      Funahashi, A.
    • Organizer
      The 14^<th> SBML Forum Meeting
    • Place of Presentation
      米国・スタンフォード大学
    • Year and Date
      2009-09-03
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] 生化学ネットワーク解析環境CellDesignerの設計と実装2009

    • Author(s)
      舟橋啓
    • Organizer
      第24回生体・生理工学シンポジウム
    • Place of Presentation
      仙台・東北大学
    • Year and Date
      2009-09-25
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner4. 1β2009

    • Author(s)
      A. Funahashi
    • Organizer
      The 14^<th> SBML Forum Meeting
    • Place of Presentation
      Stanford, USA
    • Year and Date
      2009-09-03
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Design and Implementation of high-performance sequence analysis environment using GPGPU2009

    • Author(s)
      Kazuki Hirata, Nobuyuki Ohta, Noriko Hiroi, Akira Funahashi, Yoshitaka Suetsugu
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2009-12-11
    • Data Source
      KAKENHI-PROJECT-21510217
  • [Presentation] CellDesigner4. 1 : A Process Diagram Editor for Gene-Regulatory and Biochemical Networks2009

    • Author(s)
      A. Funahashi
    • Organizer
      10^<th> International Conference on Systems Biology(ICSB 2009)
    • Place of Presentation
      Stanford, USA
    • Year and Date
      2009-08-30
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Design and Implementation of high-performance sequence analysis environment using GPGPU2009

    • Author(s)
      Kazuki Hirata, Nobuyuki Ohta, Noriko Hiroi, Akira Funahashi, Yoshitaka Suetsugu
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-11
    • Data Source
      KAKENHI-PROJECT-21510217
  • [Presentation] 生化学ネットワーク解析環境CellDesignerの設計と実装2009

    • Author(s)
      舟橋啓
    • Organizer
      第24回生体・生理工学シンポジウム
    • Place of Presentation
      東北大学
    • Year and Date
      2009-09-25
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] CellDesigner4.1 : A Process Diagram Editor for Gene Regulatory and Biochemical Networks2009

    • Author(s)
      Funahashi, A.
    • Organizer
      10^<th> International Conference on Systems Biology
    • Place of Presentation
      米国・スタンフォード大学
    • Year and Date
      2009-08-30
    • Data Source
      KAKENHI-PROJECT-21700328
  • [Presentation] Computational Platform for Systems Biology

    • Author(s)
      Akira Funahashi
    • Organizer
      Dagstuhl Seminar on Multiscale Spatial Computational Systems Biology
    • Place of Presentation
      Wadern, Germany
    • Year and Date
      2014-11-23 – 2014-11-28
    • Invited
    • Data Source
      KAKENHI-PROJECT-24300112
  • [Presentation] Development of high-speed 3D imaging system with electrically tunable lens.

    • Author(s)
      Nakai Y, Hiroi N, Funahashi A
    • Organizer
      Europian BioImaging Analysis Symposium 2015
    • Place of Presentation
      Paris, France
    • Year and Date
      2015-01-05 – 2015-01-06
    • Data Source
      KAKENHI-PROJECT-26640132
  • [Presentation] Development of high-speed 3D imaging system with electrically tunable lens.

    • Author(s)
      Nakai Y, Hiroi N, Funahashi A
    • Organizer
      Quantitative Bioimaging
    • Place of Presentation
      Paris, France
    • Year and Date
      2015-01-07 – 2015-01-09
    • Data Source
      KAKENHI-PROJECT-26640132
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