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Niida Atsushi  新井田 厚司

ORCIDConnect your ORCID iD *help
Researcher Number 00772493
Other IDs
Affiliation (Current) 2025: 東京大学, 医科学研究所, 講師
Affiliation (based on the past Project Information) *help 2019 – 2024: 東京大学, 医科学研究所, 講師
2016 – 2018: 東京大学, 医科学研究所, 助教
Review Section/Research Field
Principal Investigator
Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics
Except Principal Investigator
Basic Section 50010:Tumor biology-related / Basic Section 55010:General surgery and pediatric surgery-related / Basic Section 50020:Tumor diagnostics and therapeutics-related / Basic Section 55020:Digestive surgery-related / Basic Section 52040:Radiological sciences-related / Radiation science / Complex systems
Keywords
Principal Investigator
進化 / がん / シミュレーション / 深層学習 / 癌 / 可視化 / スーパーコンピュータ
Except Principal Investigator
大腸がん / シミュレーション / dPCR … More / シングルセル解析 / 共局在 / VISIUM / がん微小環境 / 食道癌 / 早期診断 / DNAメチル化 / MRD / メチル化ctDNA / クロストーク / scRNA / 空間的シングルセル解析 / クロストーク遺伝子 / MSI-H大腸癌 / 空間的転写産物解析 / 共局在細胞 / 抗原提示機構 / MSI-H大腸がん / 前がん病変 / 免疫寛容 / 空間的シングルセルトランスクリプトーム解析 / 転移・再発 / 患者由来オルガノイド / リキッドバイオプシー / 大腸癌 / ctDNA / マルチターゲット / 再発 / メチル化 / モニタリング / コピー数変異 / がん進化 / CMS分類 / 陥凹型大腸がん / 選択圧 / 大腸発がん / VISIUM解析 / 腫瘍免疫応答 / 中立進化 / ダーウイン進化 / 免疫応答 / サイトカイン / SPP1+マクロファージ / spatial transcriptome / 多領域シーケンス / 個別化治療 / 膵癌 / 膵癌の数理モデル / 数理モデル / 数理腫瘍学 / 免疫ゲノミクス / 遺伝子変異 / 化学放射線療法 / クローン進化 / 放射線治療 / 放射線腫瘍額 / 化学放射線治療耐性 / 放射線腫瘍学 / 腫瘍内不均一性 / エピゲノム / ゲノム / 化学放射線耐性 / 人工知能 / バイオインフォマティクス / 統計的モデリング / システム生物学 / がん Less
  • Research Projects

    (11 results)
  • Research Products

    (50 results)
  • Co-Researchers

    (42 People)
  •  メチル化ctDNAによる大腸がん根治術後再発早期診断の実装的モニタリング法の開発

    • Principal Investigator
      大村 洋文
    • Project Period (FY)
      2023 – 2025
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 50020:Tumor diagnostics and therapeutics-related
    • Research Institution
      Kyushu University
  •  大腸がん細胞との共局在により悪性度と免疫寛容を獲得するがん微小環境の解明

    • Principal Investigator
      三森 功士
    • Project Period (FY)
      2022 – 2024
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 50010:Tumor biology-related
    • Research Institution
      Kyushu University
  •  The role of cellular diversity in the metastasis and recurrence of colorectal cancer

    • Principal Investigator
      YAO Ryoji
    • Project Period (FY)
      2021 – 2023
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 50010:Tumor biology-related
    • Research Institution
      Japanese Foundation for Cancer Research
  •  ctDNAメチル化検出を実装する新たなアプローチによる大腸癌再発早期診断法の確立

    • Principal Investigator
      大津 甫
    • Project Period (FY)
      2020
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 55010:General surgery and pediatric surgery-related
    • Research Institution
      Kyushu University
  •  Chemoradiotherapy resistance and clonal evolution of esophageal cancer genome and immunoreaction

    • Principal Investigator
      Hirata Hidenari
    • Project Period (FY)
      2019 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 52040:Radiological sciences-related
    • Research Institution
      National Cancer Center Japan
      Kyushu University
  •  Computational modeling of pancreatic cancer patients identifies optimum intervention strategies

    • Principal Investigator
      Yamamoto Kimiyo
    • Project Period (FY)
      2019 – 2022
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 55020:Digestive surgery-related
    • Research Institution
      Osaka Medical and Pharmaceutical University
  •  Massively parallel cancer evolution simulation to elucidate mechanisms of intratumor heterogeneity generationPrincipal Investigator

    • Principal Investigator
      Niida Atsushi
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Review Section
      Basic Section 62010:Life, health and medical informatics-related
    • Research Institution
      The University of Tokyo
  •  Clarification of the bona-fide evolution from early to advanced CRC to establish the eradication methods.

    • Principal Investigator
      Mimori Koshi
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 55010:General surgery and pediatric surgery-related
    • Research Institution
      Kyushu University
  •  Developing analysis tools of massively parallel cancer evolution simulation to understand intratumor heterogeneityPrincipal Investigator

    • Principal Investigator
      Niida Atsushi
    • Project Period (FY)
      2017 – 2018
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Life / Health / Medical informatics
    • Research Institution
      The University of Tokyo
  •  Analysis of genomic and epigenomic intratumoral heterogeneity reveals mechanisms of resistance to chemoradiotherapy in esophageal cancer

    • Principal Investigator
      HIRATA Hidenari
    • Project Period (FY)
      2016 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Radiation science
    • Research Institution
      Kyushu University
  •  Neodimensional exploration for cancer systems by supercomputing and innovative information technology

    • Principal Investigator
      MIYANO SATORU
    • Project Period (FY)
      2015 – 2019
    • Research Category
      Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
    • Review Section
      Complex systems
    • Research Institution
      The University of Tokyo

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 Other

All Journal Article Presentation Other

  • [Journal Article] Implementable assay for monitoring minimum residual disease after radical treatment for colorectal cancer.2024

    • Author(s)
      Nakano T, Takao S, Dairaku K, Uno N, Low SA, Hashimoto M, Tsuda Y, Hisamatsu Y, Toshima T, Yonemura Y, Masuda T, Eto K, Ikegami T, Fukunaga Y, Niida A, Nagayama S, Mimori K.
    • Journal Title

      Cancer Sci.

      Volume: - Issue: 6 Pages: 1989-2001

    • DOI

      10.1111/cas.16149

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-23K24164
  • [Journal Article] Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer2023

    • Author(s)
      Ozato Y, Mimori K(28番目),他26名
    • Journal Title

      Cell Reports

      Volume: 42 Issue: 1 Pages: 111929-111929

    • DOI

      10.1016/j.celrep.2022.111929

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K08908, KAKENHI-PROJECT-22K19464, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K07659, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179
  • [Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023

    • Author(s)
      Kobayashi Y, Niida A, Nagayama S, Saeki K, (中略), Mizuno S, Kawazu M, Kohsaka S, Ueno T, Mano H, Ishihara S, Uemura M, Mori M, Doki Y, Eguchi H, Oshima M, Suzuki Y, Shibata T, Mimori K.
    • Journal Title

      Br J Cancer

      Volume: 129 Issue: 7 Pages: 1105-1118

    • DOI

      10.1038/s41416-023-02395-8

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K07153, KAKENHI-PROJECT-21K12117, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02772, KAKENHI-PROJECT-21H02795, KAKENHI-PROJECT-23K24164
  • [Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023

    • Author(s)
      Kitagawa A, Osawa T,Noda M,Kobayashi Y, Aki S,Nakano Y,Saito T,Shimizu D,Komatsu H,Sugaya M,Takahashi J,...Mimori K.
    • Journal Title

      Br J Cancer

      Volume: - Issue: 12 Pages: 22068-22068

    • DOI

      10.1038/s41416-023-02256-4

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K08826, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K07260, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-22K07774, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K08745, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24164
  • [Journal Article] Agent-Based Modeling and Analysis of Cancer Evolution2022

    • Author(s)
      Niida Atsushi、M. Iwasaki Watal
    • Journal Title

      Simulation Modeling (IntecOpen)

      Volume: なし

    • DOI

      10.5772/intechopen.100140

    • ISBN
      9781839696831, 9781839696848
    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K12214
  • [Journal Article] Modeling colorectal cancer evolution2021

    • Author(s)
      Niida Atsushi、Mimori Koshi、Shibata Tatsuhiro、Miyano Satoru
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Issue: 9 Pages: 869-878

    • DOI

      10.1038/s10038-021-00930-0

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K12214, KAKENHI-PUBLICLY-20H05039, KAKENHI-PROJECT-19H03715
  • [Journal Article] Pan-cancer methylome analysis for cancer diagnosis and classification of cancer cell of origin.2021

    • Author(s)
      Shimizu D, Taniue K, Matsui Y, Haeno H, Araki H, Miura F, Fukunaga M, Shiraishi K, Miyamoto Y, Tsukamoto S, Komine A, Kobayashi Y, Kitagawa A, Yoshikawa Y, Sato K, Saito T, Ito S, Masuda T, Niida A, Suzuki M, Baba H, Ito T, Akimitsu N, Kodera Y, Mimori K.
    • Journal Title

      Cancer Gene Ther.

      Volume: Epub Issue: 5 Pages: 1-1

    • DOI

      10.1038/s41417-021-00401-w

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-18K18151, KAKENHI-PROJECT-19K16868, KAKENHI-PUBLICLY-20H05039, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-19H03715, KAKENHI-PROJECT-20K20657, KAKENHI-PROJECT-21K19402, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K20389, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-21H02758
  • [Journal Article] Genetic landscape of external auditory canal squamous cell carcinoma2020

    • Author(s)
      Sato Kuniaki、Komune Noritaka、Hongo Takahiro、Koike Kensuke、Niida Atsushi、Uchi Ryutaro、Noda Teppei、Kogo Ryunosuke、Matsumoto Nozomu、Yamamoto Hidetaka、Masuda Muneyuki、Oda Yoshinao、Mimori Koshi、Nakagawa Takashi
    • Journal Title

      Cancer Science

      Volume: 111 Issue: 8 Pages: 3010-3019

    • DOI

      10.1111/cas.14515

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-20K18300, KAKENHI-PROJECT-18H02951, KAKENHI-PROJECT-19H03715
  • [Journal Article] A unified simulation model for understanding the diversity of cancer evolution.2020

    • Author(s)
      Niida A, Hasegawa T, Innan H, Shibata T, Mimori K, Miyano S
    • Journal Title

      PeerJ

      Volume: 8 Pages: e8842-e8842

    • DOI

      10.7717/peerj.8842

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K12214, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H05097, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-19H03715
  • [Journal Article] Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways2020

    • Author(s)
      Kasajima R, Yamaguchi R, Shimizu E, Tamada Y, Niida A, Tremmel G, Kishida T,Aoki I, Imoto S, Miyano S, Uemura H, Miyagi Y
    • Journal Title

      Oncol Rep.

      Volume: 43(3) Pages: 943-952

    • DOI

      10.3892/or.2020.7481

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization2019

    • Author(s)
      Niida A, Hasegawa T, Miyano S
    • Journal Title

      PLoS One

      Volume: 14(3) Issue: 3 Pages: e0210678-e0210678

    • DOI

      10.1371/journal.pone.0210678

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K12773
  • [Journal Article] Novel oncogene 5MP1 reprograms c-Myc translation initiation to drive malignant phenotypes in colorectal cancer.2019

    • Author(s)
      Sato K, Masuda T, Hu Q, Tobo T, Gillaspie S, Niida A, Thornton M, Kuroda Y, Eguchi H, Nakagawa T, Asano K, Mimori K.
    • Journal Title

      EBioMedicine.

      Volume: 44 Pages: 387-402

    • DOI

      10.1016/j.ebiom.2019.05.058

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K08649, KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-19K09220, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-19H03715
  • [Journal Article] A clinical trial of somatic and germline analyses for healthy longevity in a postoperative cancer patient.2019

    • Author(s)
      Hayashi N, Kuroda Y, Saito T, Tsuruda Y, Niida A, Otsu H, Eguchi H, Masuda T, Suzuki Y, Natsugoe S, Mimori K.
    • Journal Title

      Surg Today.

      Volume: Epub Issue: 9 Pages: 738-747

    • DOI

      10.1007/s00595-019-01789-7

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-18K15323, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-18K08649, KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-19K09220, KAKENHI-PROJECT-19H03715
  • [Journal Article] A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer2018

    • Author(s)
      Saito T, Niida A, Uchi R, Hirata H, Kodama M, Okimoto T, Murakami K, Suzuki Y, Ogawa S, Miyano S, Mimori K, et al.
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 2884-2884

    • DOI

      10.1038/s41467-018-05226-0

    • NAID

      120006551763

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K08695, KAKENHI-PROJECT-18K07946, KAKENHI-PROJECT-18K08009, KAKENHI-PROJECT-18K08649, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-15H05707
  • [Journal Article] Understanding intratumor heterogeneity by combining genome analysis and mathematical modeling2018

    • Author(s)
      Niida Atsushi、Nagayama Satoshi、Miyano Satoru、Mimori Koshi
    • Journal Title

      Cancer science

      Volume: 109 Issue: 4 Pages: 884-892

    • DOI

      10.1111/cas.13510

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K19608
  • [Journal Article] Combined mutation of Apc, Kras and Tgfbr2 effectively drives metastasis of intestinal cancer2018

    • Author(s)
      Sakai, E., Nakayama, M., Oshima, H., Kouyama, Y., Niida, A., Fujii, S., Ochiai, A., Nakayama, K. I., Mimori, K., Suzuki, Y., Hong, C. P., Ock, C. Y., Kim, S. J. and Oshima, M.
    • Journal Title

      Cancer reserach

      Volume: in press

    • NAID

      120006452378

    • Peer Reviewed / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K12773
  • [Journal Article] Cancer evolution and heterogeneity2018

    • Author(s)
      Mimori K, Saito T, Niida A, Miyano S
    • Journal Title

      Ann Gastroenterol Surg

      Volume: 2(5) Issue: 5 Pages: 332-338

    • DOI

      10.1002/ags3.12182

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K19608
  • [Journal Article] Interaction-based feature selection for uncovering cancer driver genes through copy number-driven expression level2017

    • Author(s)
      Park H, Niida A, Imoto S, Miyano S
    • Journal Title

      J Comput Biol

      Volume: 24(2) Issue: 2 Pages: 138-152

    • DOI

      10.1089/cmb.2016.0140

    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] Impediment of Replication Forks by Long Non-coding RNA Provokes Chromosomal Rearrangements by Error-Prone Restart2017

    • Author(s)
      Watanabe Takaaki、Marotta Michael、Suzuki Ryusuke、Diede Scott J.、Tapscott Stephen J.、Niida Atsushi、Chen Xiongfong、Mouakkad Lila、Kondratova Anna、Giuliano Armando E.、Orsulic Sandra、Tanaka Hisashi
    • Journal Title

      Cell report

      Volume: 21 Issue: 8 Pages: 2223-2235

    • DOI

      10.1016/j.celrep.2017.10.103

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K12773
  • [Journal Article] Addiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells2017

    • Author(s)
      Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji EI, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada KI, Ogawa T, Tojo A, Miyano S, Gotoh N
    • Journal Title

      Oncogene

      Volume: 36(9) Issue: 9 Pages: 1276-1286

    • DOI

      10.1038/onc.2016.293

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H06391, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-16J40231, KAKENHI-PROJECT-15K14381, KAKENHI-PROJECT-16K08672, KAKENHI-PROJECT-15H05325
  • [Journal Article] Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.2017

    • Author(s)
      Takahashi Y, Sugimachi K, Yamamoto K, Niida A, Shimamura T, Sato T, Watanabe M, Tanaka J, Kudo S, Sugihara K, Hase K, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Suzuki Y, Miyano S, Mori M, Mimori K
    • Journal Title

      Cancer Sci.

      Volume: 108(11) Issue: 11 Pages: 2239-2247

    • DOI

      10.1111/cas.13391

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-15H05325
  • [Journal Article] phyC: Clustering cancer evolutionary trees.2017

    • Author(s)
      Matsui Y, Niida A, Uchi R, Mimori K, Miyano S, Shimamura T:
    • Journal Title

      PLoS Comput Biol.

      Volume: 13(5) Issue: 5 Pages: 1005509-1005509

    • DOI

      10.1371/journal.pcbi.1005509

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-16K16146, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01572, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
  • [Journal Article] Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population.2016

    • Author(s)
      G. Sawada (他43名, 山本21番目)
    • Journal Title

      Gastroenterology

      Volume: 150 Issue: 5 Pages: 1171-1182

    • DOI

      10.1053/j.gastro.2016.01.035

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496
  • [Journal Article] Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution.2016

    • Author(s)
      R. Uchi (他40名, 山本36番目)
    • Journal Title

      PLoS Genetics

      Volume: 12 Issue: 2 Pages: 1-24

    • DOI

      10.1371/journal.pgen.1005778

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10150, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25462038, KAKENHI-PROJECT-25462070, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26861003, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10170, KAKENHI-PROJECT-15H05325
  • [Journal Article] 8q24 Polymorphisms and Diabetes Mellitus Regulate Apolipoprotein A-IV in Colorectal Carcinogenesis2016

    • Author(s)
      Sugimachi K, Yamaguchi R, Eguchi H, Ueda M, Niida A, Sakimura S, Hirata H, Uchi R, Shinden Y, Iguchi T, Morita K, Yamamoto K, Miyano S, Mori M, Maehara Y, Mimori K
    • Journal Title

      Ann Surg Oncol

      Volume: 23(Suppl 4) Issue: S4 Pages: 546-551

    • DOI

      10.1245/s10434-016-5374-1

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K19197
  • [Journal Article] Somatic mutations in plasma cell-free DNA are diagnostic markers for esophageal squamous cell carcinoma recurrence2016

    • Author(s)
      Ueda M, Iguchi T, Masuda T, Nakahara Y, Hirata H, Uchi R, Niida A, Momose K, Sakimura S, Chiba K, Eguchi H, Ito S, Sugimachi K, Yamasaki M, Suzuki Y, Miyano S, Doki Y, Mori M, Mimori K
    • Journal Title

      Oncotarget

      Volume: 7(38) Issue: 38 Pages: 62280-62291

    • DOI

      10.18632/oncotarget.11409

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-16K19197
  • [Journal Article] A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models2015

    • Author(s)
      Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S
    • Journal Title

      Computational Statistics & Data Analysis

      Volume: 94 Pages: 63-74

    • DOI

      10.1016/j.csda.2015.08.003

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H06008, KAKENHI-PROJECT-25730173
  • [Journal Article] Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome2015

    • Author(s)
      Ayada E, Niida A, Hasegawa T, Miyano S, Imoto S
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 9096 Pages: 12-23

    • DOI

      10.1007/978-3-319-19048-8_2

    • ISBN
      9783319190471, 9783319190488
    • Peer Reviewed
    • Data Source
      KAKENHI-PLANNED-15H05912
  • [Journal Article] An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma2015

    • Author(s)
      Sawada G, Niida A, Hirata H, Komatsu H, Uchi R, Shimamura T, Takahashi Y, Kurashige J, Matsumura T, Ueo H, Takano Y, Ueda M, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Yamasaki M, Tanaka F, Tachimori Y, Kajiyama Y, Natsugoe S, Fujita H, Tanaka Y, Calin G, Miyano S, Doki Y, Mori M, Mimori K
    • Journal Title

      PLoS One

      Volume: 10(10) Issue: 10 Pages: e0139808-e0139808

    • DOI

      10.1371/journal.pone.0139808

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
  • [Presentation] MSI-H大腸がんの免疫回避にむけたゲノム進化機構.2023

    • Author(s)
      三森 功士, 小林 雄太, 新井田 厚司,高橋 数冴, 長山 聡, 増田 隆明.
    • Organizer
      第82回日本癌学会学術総会
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-23K24164
  • [Presentation] 化学放射線治療耐性を生む食道癌ゲノムのクローン進化2021

    • Author(s)
      平田秀成、新井田厚司、塩山義之、三森功士
    • Organizer
      第1回日本癌学会若手の会
    • Data Source
      KAKENHI-PROJECT-19K08123
  • [Presentation] The evolving genomic landscape of esophageal squamous cell carcinoma resistant to chemoradiotherapy2021

    • Author(s)
      Hirata H, Niida A, Sugimachi K, Masuda T, Kageyama SI, Motomura Y, Akimoto T, Mimori K.
    • Organizer
      第80回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-19K08123
  • [Presentation] ゲノム解析による化学放射線治療時の食道扁平上皮癌の進展機構の解明2021

    • Author(s)
      新井田厚司、平田秀成、三森功士
    • Organizer
      第80回日本癌学会
    • Data Source
      KAKENHI-PROJECT-19H03715
  • [Presentation] Clonal evolution in relapsed esophageal cancer following chemoradiotherapy2019

    • Author(s)
      平田 秀成, 新井田 厚司, 塩山 善之, 三森 功士
    • Organizer
      第78回日本癌学会学術総会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19K08123
  • [Presentation] Mutational dynamics and clonal evolution in esophageal cancer following chemoradiotherapy2019

    • Author(s)
      Hirata H, Niida A, Shioyama Y, Mimori K.
    • Organizer
      日本放射線影響学会第62回大会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19K08123
  • [Presentation] 超並列シミュレーションと対話的可視化を組み合わせたパラメータ感受性解析手法の開発2019

    • Author(s)
      新井田厚司
    • Organizer
      2019年度 統計関連学会連合大会
    • Data Source
      KAKENHI-PROJECT-19K12214
  • [Presentation] 化学放射線治療後の再発食道癌におけるクローン進化2019

    • Author(s)
      平田秀成、新井田厚司、塩山善之、三森功士
    • Organizer
      第77回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-19H03715
  • [Presentation] がんの多様な進化様式を統一的に記述するシミュレーションモデル2019

    • Author(s)
      新井田厚司
    • Organizer
      第8回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-19K12214
  • [Presentation] 化学放射線治療耐性を生む食道扁平上皮癌ゲノムのクローン進化の解析2019

    • Author(s)
      平田秀成、新井田厚司、増田隆明、塩山善之、森田勝、本田浩、藤也寸志、三森功士
    • Organizer
      第73回日本食道学会
    • Data Source
      KAKENHI-PROJECT-19H03715
  • [Presentation] 化学放射線治療耐性を生む食道扁平上皮癌ゲノムのクローン進化の解析2019

    • Author(s)
      平田 秀成, 新井田 厚司, 増田 隆明, 塩山 善之, 森田 勝, 本田 浩, 藤 也寸志, 三森 功士
    • Organizer
      第73回日本食道学会学術集会
    • Invited
    • Data Source
      KAKENHI-PROJECT-19K08123
  • [Presentation] 食道癌に対する化学放射線療法症例における再発クローンの検討2018

    • Author(s)
      平田 秀成、新井田 厚司、大賀 才路、吉武 忠正、浅井 佳央里、松本 圭司、 中島 孝彰、鶴丸 大介、野元 諭、三森 功士、本田 浩
    • Organizer
      第56回日本放射線腫瘍学会生物部会学術大会
    • Data Source
      KAKENHI-PROJECT-16K10397
  • [Presentation] Somatic Copy Number Alterations Associate with Chemoradiotherapy Response in Esophageal Squamous Cell Carcinoma2018

    • Author(s)
      Hirata H, Ohga S, Niida A, Saito T, Tsurumaru D, Mimori K, Honda H.
    • Organizer
      第77回日本癌学会学術総会
    • Data Source
      KAKENHI-PROJECT-16K10397
  • [Presentation] 全エクソームシーケンスが明らかにした食道癌の化学放射線耐性にかかわる体細胞変異2018

    • Author(s)
      平田秀成、大賀才路、新井田厚司、吉武忠正、浅井佳央里、松本圭司、中島孝彰、 鶴丸大介、西牟田雄祐、村木俊夫、佐々木智成、野元諭、三森功士、本田浩
    • Organizer
      日本放射線腫瘍学会第31回学術大会
    • Data Source
      KAKENHI-PROJECT-16K10397
  • [Presentation] Mutational Dynamics of Primary and Recurrent Esophageal Squamous Cell Carcinoma Treated with Chemoradiotherapy2018

    • Author(s)
      Hirata H, Ohga S, Niida A, Yoshitake T,Asai K, Nakashima T,Tsurumaru D, Nishimuta Y, Muraki T, Sasaki T, Nomoto S, Mimori K, Honda H
    • Organizer
      60th American Society for Radiation Oncology Annual Meeting
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K10397
  • [Presentation] Multiregional sequencing unveiled temporal dynamics of intratumor heterogeneity during colorectal cancer evolution2017

    • Author(s)
      Atsuahi Niida
    • Organizer
      International Conference on Translational Cancer Medicine held in cooperation with the Latin American Cooperative Oncology Group (LACOG)
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K12773
  • [Presentation] がんの進化シミュレーション2017

    • Author(s)
      新井田厚司
    • Organizer
      第6回生命医薬情報学連合大会
    • Data Source
      KAKENHI-PROJECT-17K12773
  • [Presentation] 大腸がんの進化と腫瘍内不均一性2017

    • Author(s)
      新井田厚司
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Data Source
      KAKENHI-PROJECT-17K12773
  • [Presentation] Genome-wide Copy Number Analysis of Chemoradiotherapy Response in Esophageal Squamous Cell Carcinoma.2016

    • Author(s)
      Hirata H, Niida A, Ito S, Uchi R, Saito T, Terashima K, Ohga S, Sakamoto K, Hirakawa M, Honda H, Mimori K.
    • Organizer
      The 1st Meeting of the Federaion of Asian Organization for Radiation Oncology
    • Place of Presentation
      Kyoto
    • Year and Date
      2016-11-25
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K10397
  • [Presentation] Genomic correlates of response to chemoradio-therapy in esophageal squamous cell carcinoma.2016

    • Author(s)
      Hirata H, Ito S, Niida A, Uchi R, Saito T, Masuda T, Hayashi N, Kuroda Y, Eguchi H, Hirakawa M, Honda H, Mimori K
    • Organizer
      第75回日本癌学会学術総会
    • Place of Presentation
      横浜市
    • Year and Date
      2016-10-06
    • Data Source
      KAKENHI-PROJECT-16K10397
  • []

  • 1.  Mimori Koshi (50322748)
    # of Collaborated Projects: 5 results
    # of Collaborated Products: 17 results
  • 2.  長山 聡 (70362499)
    # of Collaborated Projects: 4 results
    # of Collaborated Products: 1 results
  • 3.  HIRATA Hidenari (90721267)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 11 results
  • 4.  鈴木 穣 (40323646)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 0 results
  • 5.  MIYANO SATORU (50128104)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 8 results
  • 6.  Yamamoto Kimiyo (70611078)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 7.  YAO Ryoji (80291095)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 8.  島村 徹平 (00623943)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 9.  白石 友一 (70516880)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 10.  PARK HEEWON (70756642)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 11.  山口 類 (90380675)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 12.  片山 琴絵 (40581195)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 13.  張 耀中 (60817138)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 14.  井元 清哉 (10345027)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 3 results
  • 15.  玉田 嘉紀 (80435495)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 16.  平川 雅和 (20380454)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 2 results
  • 17.  吉武 忠正 (40452750)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 18.  松本 圭司 (40467907)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 19.  浅井 佳央里 (40635471)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 20.  鶴丸 大介 (90419565)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 21.  西牟田 雄祐 (10635220)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 22.  塩山 善之 (10323304)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 4 results
  • 23.  内山 和久 (80232867)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 24.  岩嵜 航 (30838959)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 1 results
  • 25.  工藤 進英 (70161643)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 26.  大津 甫 (50827227)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 27.  宇野 直輝 (60624781)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 28.  丸山 玲緒 (60607985)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 29.  小嶋 泰弘 (00881731)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 30.  大村 洋文 (60767375)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 31.  LOW SIEWKEE (40634720)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 32.  MIZUNO Shinichi
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 33.  TOSHIMA Takeo
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 34.  増田 隆明
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 35.  村上 和成
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 36.  兒玉 雅明
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 37.  山本 健
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 2 results
  • 38.  高橋 純一
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 39.  吉住 朋晴
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 40.  佐藤 晋彰
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 41.  黒田 陽介
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results
  • 42.  鶴田 祐介
    # of Collaborated Projects: 0 results
    # of Collaborated Products: 1 results

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