Niida Atsushi 新井田厚司

Researcher Number	00772493
Other IDs
Affiliation (Current)	2025: 東京大学, 医科学研究所, 講師
Affiliation (based on the past Project Information) *help	2019 – 2024: 東京大学, 医科学研究所, 講師 2016 – 2018: 東京大学, 医科学研究所, 助教
Review Section/Research Field	Principal Investigator Basic Section 62010:Life, health and medical informatics-related / Life / Health / Medical informatics Except Principal Investigator Basic Section 50010:Tumor biology-related / Basic Section 55010:General surgery and pediatric surgery-related / Basic Section 50020:Tumor diagnostics and therapeutics-related / Basic Section 55020:Digestive surgery-related / Basic Section 52040:Radiological sciences-related / Radiation science / Complex systems
Keywords	Principal Investigator 進化 / がん / シミュレーション / 深層学習 / 癌 / 可視化 / スーパーコンピュータ Except Principal Investigator 大腸がん / シミュレーション / dPCR … More / シングルセル解析 / 共局在 / VISIUM / がん微小環境 / 食道癌 / 早期診断 / DNAメチル化 / MRD / メチル化ctDNA / クロストーク / scRNA / 空間的シングルセル解析 / クロストーク遺伝子 / MSI-H大腸癌 / 空間的転写産物解析 / 共局在細胞 / 抗原提示機構 / MSI-H大腸がん / 前がん病変 / 免疫寛容 / 空間的シングルセルトランスクリプトーム解析 / 転移・再発 / 患者由来オルガノイド / リキッドバイオプシー / 大腸癌 / ctDNA / マルチターゲット / 再発 / メチル化 / モニタリング / コピー数変異 / がん進化 / CMS分類 / 陥凹型大腸がん / 選択圧 / 大腸発がん / VISIUM解析 / 腫瘍免疫応答 / 中立進化 / ダーウイン進化 / 免疫応答 / サイトカイン / SPP1+マクロファージ / spatial transcriptome / 多領域シーケンス / 個別化治療 / 膵癌 / 膵癌の数理モデル / 数理モデル / 数理腫瘍学 / 免疫ゲノミクス / 遺伝子変異 / 化学放射線療法 / クローン進化 / 放射線治療 / 放射線腫瘍額 / 化学放射線治療耐性 / 放射線腫瘍学 / 腫瘍内不均一性 / エピゲノム / ゲノム / 化学放射線耐性 / 人工知能 / バイオインフォマティクス / 統計的モデリング / システム生物学 / がん Less

メチル化ctDNAによる大腸がん根治術後再発早期診断の実装的モニタリング法の開発
- Principal Investigator
  
  大村洋文
- Project Period (FY)
  2023 – 2025
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 50020:Tumor diagnostics and therapeutics-related
- Research Institution
  Kyushu University
大腸がん細胞との共局在により悪性度と免疫寛容を獲得するがん微小環境の解明
- Principal Investigator
  
  三森功士
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 50010:Tumor biology-related
- Research Institution
  Kyushu University
The role of cellular diversity in the metastasis and recurrence of colorectal cancer
- Principal Investigator
  
  YAO Ryoji
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 50010:Tumor biology-related
- Research Institution
  Japanese Foundation for Cancer Research
ctDNAメチル化検出を実装する新たなアプローチによる大腸癌再発早期診断法の確立
- Principal Investigator
  
  大津甫
- Project Period (FY)
  2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 55010:General surgery and pediatric surgery-related
- Research Institution
  Kyushu University
Chemoradiotherapy resistance and clonal evolution of esophageal cancer genome and immunoreaction
- Principal Investigator
  
  Hirata Hidenari
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 52040:Radiological sciences-related
- Research Institution
  National Cancer Center Japan
  Kyushu University
Computational modeling of pancreatic cancer patients identifies optimum intervention strategies
- Principal Investigator
  
  Yamamoto Kimiyo
- Project Period (FY)
  2019 – 2022
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 55020:Digestive surgery-related
- Research Institution
  Osaka Medical and Pharmaceutical University
Massively parallel cancer evolution simulation to elucidate mechanisms of intratumor heterogeneity generationPrincipal Investigator
- Principal Investigator
  
  Niida Atsushi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 62010:Life, health and medical informatics-related
- Research Institution
  The University of Tokyo
Clarification of the bona-fide evolution from early to advanced CRC to establish the eradication methods.
- Principal Investigator
  
  Mimori Koshi
- Project Period (FY)
  2019 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 55010:General surgery and pediatric surgery-related
- Research Institution
  Kyushu University
Developing analysis tools of massively parallel cancer evolution simulation to understand intratumor heterogeneityPrincipal Investigator
- Principal Investigator
  
  Niida Atsushi
- Project Period (FY)
  2017 – 2018
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Life / Health / Medical informatics
- Research Institution
  The University of Tokyo
Analysis of genomic and epigenomic intratumoral heterogeneity reveals mechanisms of resistance to chemoradiotherapy in esophageal cancer
- Principal Investigator
  
  HIRATA Hidenari
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Radiation science
- Research Institution
  Kyushu University
Neodimensional exploration for cancer systems by supercomputing and innovative information technology
- Principal Investigator
  
  MIYANO SATORU
- Project Period (FY)
  2015 – 2019
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo

All 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015

All Journal Article Presentation

[Journal Article] Implementable assay for monitoring minimum residual disease after radical treatment for colorectal cancer.2024
- Author(s)
  Nakano T, Takao S, Dairaku K, Uno N, Low SA, Hashimoto M, Tsuda Y, Hisamatsu Y, Toshima T, Yonemura Y, Masuda T, Eto K, Ikegami T, Fukunaga Y, Niida A, Nagayama S, Mimori K.
- Journal Title
  
  Cancer Sci.
  
  Volume: - Issue: 6 Pages: 1989-2001
- DOI
  10.1111/cas.16149
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-23K24164
[Journal Article] Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer2023
- Author(s)
  Ozato Y, Mimori K(28番目）,他26名
- Journal Title
  
  Cell Reports
  
  Volume: 42 Issue: 1 Pages: 111929-111929
- DOI
  10.1016/j.celrep.2022.111929
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08908, KAKENHI-PROJECT-22K19464, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-19K07659, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179
[Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023
- Author(s)
  Kobayashi Y, Niida A, Nagayama S, Saeki K, （中略）, Mizuno S, Kawazu M, Kohsaka S, Ueno T, Mano H, Ishihara S, Uemura M, Mori M, Doki Y, Eguchi H, Oshima M, Suzuki Y, Shibata T, Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: 129 Issue: 7 Pages: 1105-1118
- DOI
  10.1038/s41416-023-02395-8
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K07153, KAKENHI-PROJECT-21K12117, KAKENHI-PROJECT-22K08894, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K06662, KAKENHI-PROJECT-23K08128, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-21H02772, KAKENHI-PROJECT-21H02795, KAKENHI-PROJECT-23K24164
[Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023
- Author(s)
  Kitagawa A, Osawa T,Noda M,Kobayashi Y, Aki S,Nakano Y,Saito T,Shimizu D,Komatsu H,Sugaya M,Takahashi J,...Mimori K.
- Journal Title
  
  Br J Cancer
  
  Volume: - Issue: 12 Pages: 22068-22068
- DOI
  10.1038/s41416-023-02256-4
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K08826, KAKENHI-PROJECT-20H04281, KAKENHI-PROJECT-20K07260, KAKENHI-PROJECT-20K21832, KAKENHI-PUBLICLY-22H04839, KAKENHI-PROJECT-23K18234, KAKENHI-PROJECT-22K07774, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-21K08745, KAKENHI-PLANNED-23H04938, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K24164
[Journal Article] Agent-Based Modeling and Analysis of Cancer Evolution2022
- Author(s)
  Niida Atsushi、M. Iwasaki Watal
- Journal Title
  
  Simulation Modeling (IntecOpen)
  
  Volume: なし
- DOI
  10.5772/intechopen.100140
- ISBN
  9781839696831, 9781839696848
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12214
[Journal Article] Modeling colorectal cancer evolution2021
- Author(s)
  Niida Atsushi、Mimori Koshi、Shibata Tatsuhiro、Miyano Satoru
- Journal Title
  
  Journal of Human Genetics
  
  Volume: 66 Issue: 9 Pages: 869-878
- DOI
  10.1038/s10038-021-00930-0
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12214, KAKENHI-PUBLICLY-20H05039, KAKENHI-PROJECT-19H03715
[Journal Article] Pan-cancer methylome analysis for cancer diagnosis and classification of cancer cell of origin.2021
- Author(s)
  Shimizu D, Taniue K, Matsui Y, Haeno H, Araki H, Miura F, Fukunaga M, Shiraishi K, Miyamoto Y, Tsukamoto S, Komine A, Kobayashi Y, Kitagawa A, Yoshikawa Y, Sato K, Saito T, Ito S, Masuda T, Niida A, Suzuki M, Baba H, Ito T, Akimitsu N, Kodera Y, Mimori K.
- Journal Title
  
  Cancer Gene Ther.
  
  Volume: Epub Issue: 5 Pages: 1-1
- DOI
  10.1038/s41417-021-00401-w
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-18K18151, KAKENHI-PROJECT-19K16868, KAKENHI-PUBLICLY-20H05039, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-19H03715, KAKENHI-PROJECT-20K20657, KAKENHI-PROJECT-21K19402, KAKENHI-PROJECT-21K07179, KAKENHI-PROJECT-22K09006, KAKENHI-PROJECT-23K20389, KAKENHI-PROJECT-23K24164, KAKENHI-PROJECT-21H02758
[Journal Article] Genetic landscape of external auditory canal squamous cell carcinoma2020
- Author(s)
  Sato Kuniaki、Komune Noritaka、Hongo Takahiro、Koike Kensuke、Niida Atsushi、Uchi Ryutaro、Noda Teppei、Kogo Ryunosuke、Matsumoto Nozomu、Yamamoto Hidetaka、Masuda Muneyuki、Oda Yoshinao、Mimori Koshi、Nakagawa Takashi
- Journal Title
  
  Cancer Science
  
  Volume: 111 Issue: 8 Pages: 3010-3019
- DOI
  10.1111/cas.14515
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K18300, KAKENHI-PROJECT-18H02951, KAKENHI-PROJECT-19H03715
[Journal Article] A unified simulation model for understanding the diversity of cancer evolution.2020
- Author(s)
  Niida A, Hasegawa T, Innan H, Shibata T, Mimori K, Miyano S
- Journal Title
  
  PeerJ
  
  Volume: 8 Pages: e8842-e8842
- DOI
  10.7717/peerj.8842
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K12214, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H05097, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-19H03715
[Journal Article] Variant analysis of prostate　cancer in Japanese patients and a new attempt to predict related biological　pathways2020
- Author(s)
  Kasajima R, Yamaguchi R, Shimizu E, Tamada Y, Niida A, Tremmel G, Kishida T,Aoki I, Imoto S, Miyano S, Uemura H, Miyagi Y
- Journal Title
  
  Oncol Rep.
  
  Volume: 43(3) Pages: 943-952
- DOI
  10.3892/or.2020.7481
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912
[Journal Article] Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization2019
- Author(s)
  Niida A, Hasegawa T, Miyano S
- Journal Title
  
  PLoS One
  
  Volume: 14(3) Issue: 3 Pages: e0210678-e0210678
- DOI
  10.1371/journal.pone.0210678
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K12773
[Journal Article] Novel oncogene 5MP1 reprograms c-Myc translation initiation to drive malignant phenotypes in colorectal cancer.2019
- Author(s)
  Sato K, Masuda T, Hu Q, Tobo T, Gillaspie S, Niida A, Thornton M, Kuroda Y, Eguchi H, Nakagawa T, Asano K, Mimori K.
- Journal Title
  
  EBioMedicine.
  
  Volume: 44 Pages: 387-402
- DOI
  10.1016/j.ebiom.2019.05.058
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K08649, KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-19K09220, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-19H03715
[Journal Article] A clinical trial of somatic and germline analyses for healthy longevity in a postoperative cancer patient.2019
- Author(s)
  Hayashi N, Kuroda Y, Saito T, Tsuruda Y, Niida A, Otsu H, Eguchi H, Masuda T, Suzuki Y, Natsugoe S, Mimori K.
- Journal Title
  
  Surg Today.
  
  Volume: Epub Issue: 9 Pages: 738-747
- DOI
  10.1007/s00595-019-01789-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15323, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-18K08649, KAKENHI-PROJECT-19K09176, KAKENHI-PROJECT-19K09220, KAKENHI-PROJECT-19H03715
[Journal Article] A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer2018
- Author(s)
  Saito T, Niida A, Uchi R, Hirata H, Kodama M, Okimoto T, Murakami K, Suzuki Y, Ogawa S, Miyano S, Mimori K, et al.
- Journal Title
  
  Nature Communications
  
  Volume: 9 Issue: 1 Pages: 2884-2884
- DOI
  10.1038/s41467-018-05226-0
- NAID
  120006551763
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K08695, KAKENHI-PROJECT-18K07946, KAKENHI-PROJECT-18K08009, KAKENHI-PROJECT-18K08649, KAKENHI-PLANNED-15H05909, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-18H04798, KAKENHI-PROJECT-18H03207, KAKENHI-PROJECT-15H05325, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-15H05707
[Journal Article] Understanding intratumor heterogeneity by combining genome analysis and mathematical modeling2018
- Author(s)
  Niida Atsushi、Nagayama Satoshi、Miyano Satoru、Mimori Koshi
- Journal Title
  
  Cancer science
  
  Volume: 109 Issue: 4 Pages: 884-892
- DOI
  10.1111/cas.13510
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K19608
[Journal Article] Combined mutation of Apc, Kras and Tgfbr2 effectively drives metastasis of intestinal cancer2018
- Author(s)
  Sakai, E., Nakayama, M., Oshima, H., Kouyama, Y., Niida, A., Fujii, S., Ochiai, A., Nakayama, K. I., Mimori, K., Suzuki, Y., Hong, C. P., Ock, C. Y., Kim, S. J. and Oshima, M.
- Journal Title
  
  Cancer reserach
  
  Volume: in press
- NAID
  120006452378
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K12773
[Journal Article] Cancer evolution and heterogeneity2018
- Author(s)
  Mimori K, Saito T, Niida A, Miyano S
- Journal Title
  
  Ann Gastroenterol Surg
  
  Volume: 2(5) Issue: 5 Pages: 332-338
- DOI
  10.1002/ags3.12182
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-17K19608
[Journal Article] Interaction-based feature selection for uncovering cancer driver genes through copy number-driven expression level2017
- Author(s)
  Park H, Niida A, Imoto S, Miyano S
- Journal Title
  
  J Comput Biol
  
  Volume: 24(2) Issue: 2 Pages: 138-152
- DOI
  10.1089/cmb.2016.0140
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-15H05912
[Journal Article] Impediment of Replication Forks by Long Non-coding RNA Provokes Chromosomal Rearrangements by Error-Prone Restart2017
- Author(s)
  Watanabe Takaaki、Marotta Michael、Suzuki Ryusuke、Diede Scott J.、Tapscott Stephen J.、Niida Atsushi、Chen Xiongfong、Mouakkad Lila、Kondratova Anna、Giuliano Armando E.、Orsulic Sandra、Tanaka Hisashi
- Journal Title
  
  Cell report
  
  Volume: 21 Issue: 8 Pages: 2223-2235
- DOI
  10.1016/j.celrep.2017.10.103
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K12773
[Journal Article] Addiction to the IGF2-ID1-IGF2 circuit for maintenance of the breast cancer stem-like cells2017
- Author(s)
  Tominaga K, Shimamura T, Kimura N, Murayama T, Matsubara D, Kanauchi H, Niida A, Shimizu S, Nishioka K, Tsuji EI, Yano M, Sugano S, Shimono Y, Ishii H, Saya H, Mori M, Akashi K, Tada KI, Ogawa T, Tojo A, Miyano S, Gotoh N
- Journal Title
  
  Oncogene
  
  Volume: 36(9) Issue: 9 Pages: 1276-1286
- DOI
  10.1038/onc.2016.293
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H06391, KAKENHI-PROJECT-15H04294, KAKENHI-PROJECT-16J40231, KAKENHI-PROJECT-15K14381, KAKENHI-PROJECT-16K08672, KAKENHI-PROJECT-15H05325
[Journal Article] Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.2017
- Author(s)
  Takahashi Y, Sugimachi K, Yamamoto K, Niida A, Shimamura T, Sato T, Watanabe M, Tanaka J, Kudo S, Sugihara K, Hase K, Kusunoki M, Yamada K, Shimada Y, Moriya Y, Suzuki Y, Miyano S, Mori M, Mimori K
- Journal Title
  
  Cancer Sci.
  
  Volume: 108(11) Issue: 11 Pages: 2239-2247
- DOI
  10.1111/cas.13391
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-17K12773, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-15H05325
[Journal Article] phyC: Clustering cancer evolutionary trees.2017
- Author(s)
  Matsui Y, Niida A, Uchi R, Mimori K, Miyano S, Shimamura T:
- Journal Title
  
  PLoS Comput Biol.
  
  Volume: 13(5) Issue: 5 Pages: 1005509-1005509
- DOI
  10.1371/journal.pcbi.1005509
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K19608, KAKENHI-PROJECT-16K16146, KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01572, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K12139, KAKENHI-PROJECT-15H05325
[Journal Article] Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population.2016
- Author(s)
  G. Sawada (他43名, 山本21番目)
- Journal Title
  
  Gastroenterology
  
  Volume: 150 Issue: 5 Pages: 1171-1182
- DOI
  10.1053/j.gastro.2016.01.035
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-14J10908, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003, KAKENHI-PROJECT-25290043, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-15H05791, KAKENHI-PROJECT-16H04692, KAKENHI-PROJECT-26293303, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K15496
[Journal Article] Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution.2016
- Author(s)
  R. Uchi (他40名, 山本36番目)
- Journal Title
  
  PLoS Genetics
  
  Volume: 12 Issue: 2 Pages: 1-24
- DOI
  10.1371/journal.pgen.1005778
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K05577, KAKENHI-PROJECT-15K10150, KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H05707, KAKENHI-PROJECT-24221011, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-25462038, KAKENHI-PROJECT-25462070, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-25860521, KAKENHI-PROJECT-26861003, KAKENHI-PLANNED-15H05909, KAKENHI-PROJECT-26461994, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10170, KAKENHI-PROJECT-15H05325
[Journal Article] 8q24 Polymorphisms and Diabetes Mellitus Regulate Apolipoprotein A-IV in Colorectal Carcinogenesis2016
- Author(s)
  Sugimachi K, Yamaguchi R, Eguchi H, Ueda M, Niida A, Sakimura S, Hirata H, Uchi R, Shinden Y, Iguchi T, Morita K, Yamamoto K, Miyano S, Mori M, Maehara Y, Mimori K
- Journal Title
  
  Ann Surg Oncol
  
  Volume: 23(Suppl 4) Issue: S4 Pages: 546-551
- DOI
  10.1245/s10434-016-5374-1
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K19197
[Journal Article] Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal Dissemination.2016
- Author(s)
  Kurashige J, Hasegawa T, Niida A, Sugimachi K, Deng N, Mima K, Uchi R, Sawada G, Takahashi Y, Eguchi H, Inomata M, Kitano S, Fukagawa T, Sasako M, Sasaki H, Sasaki S, Mori M, Yanagihara K, Baba H, Miyano S, Tan P, Mimori K.
- Journal Title
  
  Sci Rep.
  
  Volume: 6 Issue: 1 Pages: 22371-22371
- DOI
  10.1038/srep22371
- NAID
  120006352400
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-15K19337, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-26670608, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15K19899, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177
[Journal Article] Somatic mutations in plasma cell-free DNA are diagnostic markers for esophageal squamous cell carcinoma recurrence2016
- Author(s)
  Ueda M, Iguchi T, Masuda T, Nakahara Y, Hirata H, Uchi R, Niida A, Momose K, Sakimura S, Chiba K, Eguchi H, Ito S, Sugimachi K, Yamasaki M, Suzuki Y, Miyano S, Doki Y, Mori M, Mimori K
- Journal Title
  
  Oncotarget
  
  Volume: 7(38) Issue: 38 Pages: 62280-62291
- DOI
  10.18632/oncotarget.11409
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PLANNED-15H05912, KAKENHI-PUBLICLY-16H01576, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-15K10168, KAKENHI-PROJECT-16K07177, KAKENHI-PROJECT-16K10543, KAKENHI-PROJECT-16K19197
[Journal Article] A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models2015
- Author(s)
  Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S
- Journal Title
  
  Computational Statistics & Data Analysis
  
  Volume: 94 Pages: 63-74
- DOI
  10.1016/j.csda.2015.08.003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H06008, KAKENHI-PROJECT-25730173
[Journal Article] Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome2015
- Author(s)
  Ayada E, Niida A, Hasegawa T, Miyano S, Imoto S
- Journal Title
  
  Lecture Notes in Computer Science
  
  Volume: 9096 Pages: 12-23
- DOI
  10.1007/978-3-319-19048-8_2
- ISBN
  9783319190471, 9783319190488
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-15H05912
[Journal Article] An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma2015
- Author(s)
  Sawada G, Niida A, Hirata H, Komatsu H, Uchi R, Shimamura T, Takahashi Y, Kurashige J, Matsumura T, Ueo H, Takano Y, Ueda M, Sakimura S, Shinden Y, Eguchi H, Sudo T, Sugimachi K, Yamasaki M, Tanaka F, Tachimori Y, Kajiyama Y, Natsugoe S, Fujita H, Tanaka Y, Calin G, Miyano S, Doki Y, Mori M, Mimori K
- Journal Title
  
  PLoS One
  
  Volume: 10(10) Issue: 10 Pages: e0139808-e0139808
- DOI
  10.1371/journal.pone.0139808
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15K12139, KAKENHI-PLANNED-15H05912, KAKENHI-PROJECT-15H04921, KAKENHI-PROJECT-25461953, KAKENHI-PROJECT-26670608, KAKENHI-PROJECT-25730173, KAKENHI-PROJECT-26861003
[Presentation] MSI-H大腸がんの免疫回避にむけたゲノム進化機構.2023
- Author(s)
  三森功士, 小林雄太, 新井田厚司,高橋数冴, 長山聡, 増田隆明.
- Organizer
  第82回日本癌学会学術総会
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-23K24164
[Presentation] 化学放射線治療耐性を生む食道癌ゲノムのクローン進化2021
- Author(s)
  平田秀成、新井田厚司、塩山義之、三森功士
- Organizer
  第１回日本癌学会若手の会
- Data Source
  KAKENHI-PROJECT-19K08123
[Presentation] The evolving genomic landscape of esophageal squamous cell carcinoma resistant to chemoradiotherapy2021
- Author(s)
  Hirata H, Niida A, Sugimachi K, Masuda T, Kageyama SI, Motomura Y, Akimoto T, Mimori K.
- Organizer
  第80回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-19K08123
[Presentation] ゲノム解析による化学放射線治療時の食道扁平上皮癌の進展機構の解明2021
- Author(s)
  新井田厚司、平田秀成、三森功士
- Organizer
  第80回日本癌学会
- Data Source
  KAKENHI-PROJECT-19H03715
[Presentation] Clonal evolution in relapsed esophageal cancer following chemoradiotherapy2019
- Author(s)
  平田秀成, 新井田厚司, 塩山善之, 三森功士
- Organizer
  第78回日本癌学会学術総会
- Invited
- Data Source
  KAKENHI-PROJECT-19K08123
[Presentation] Mutational dynamics and clonal evolution in esophageal cancer following chemoradiotherapy2019
- Author(s)
  Hirata H, Niida A, Shioyama Y, Mimori K.
- Organizer
  日本放射線影響学会第62回大会
- Invited
- Data Source
  KAKENHI-PROJECT-19K08123
[Presentation] 超並列シミュレーションと対話的可視化を組み合わせたパラメータ感受性解析手法の開発2019
- Author(s)
  新井田厚司
- Organizer
  2019年度　統計関連学会連合大会
- Data Source
  KAKENHI-PROJECT-19K12214
[Presentation] 化学放射線治療後の再発食道癌におけるクローン進化2019
- Author(s)
  平田秀成、新井田厚司、塩山善之、三森功士
- Organizer
  第77回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-19H03715
[Presentation] がんの多様な進化様式を統一的に記述するシミュレーションモデル2019
- Author(s)
  新井田厚司
- Organizer
  第8回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-19K12214
[Presentation] 化学放射線治療耐性を生む食道扁平上皮癌ゲノムのクローン進化の解析2019
- Author(s)
  平田秀成、新井田厚司、増田隆明、塩山善之、森田勝、本田浩、藤也寸志、三森功士
- Organizer
  第73回日本食道学会
- Data Source
  KAKENHI-PROJECT-19H03715
[Presentation] 化学放射線治療耐性を生む食道扁平上皮癌ゲノムのクローン進化の解析2019
- Author(s)
  平田秀成, 新井田厚司, 増田隆明, 塩山善之, 森田勝, 本田浩, 藤也寸志, 三森功士
- Organizer
  第73回日本食道学会学術集会
- Invited
- Data Source
  KAKENHI-PROJECT-19K08123
[Presentation] 食道癌に対する化学放射線療法症例における再発クローンの検討2018
- Author(s)
  平田秀成、新井田厚司、大賀才路、吉武忠正、浅井佳央里、松本圭司、中島孝彰、鶴丸大介、野元諭、三森功士、本田浩
- Organizer
  第56回日本放射線腫瘍学会生物部会学術大会
- Data Source
  KAKENHI-PROJECT-16K10397
[Presentation] Somatic Copy Number Alterations Associate with Chemoradiotherapy Response in Esophageal Squamous Cell Carcinoma2018
- Author(s)
  Hirata H, Ohga S, Niida A, Saito T, Tsurumaru D, Mimori K, Honda H.
- Organizer
  第77回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-16K10397
[Presentation] 全エクソームシーケンスが明らかにした食道癌の化学放射線耐性にかかわる体細胞変異2018
- Author(s)
  平田秀成、大賀才路、新井田厚司、吉武忠正、浅井佳央里、松本圭司、中島孝彰、鶴丸大介、西牟田雄祐、村木俊夫、佐々木智成、野元諭、三森功士、本田浩
- Organizer
  日本放射線腫瘍学会第31回学術大会
- Data Source
  KAKENHI-PROJECT-16K10397
[Presentation] Mutational Dynamics of Primary and Recurrent Esophageal Squamous Cell Carcinoma Treated with Chemoradiotherapy2018
- Author(s)
  Hirata H, Ohga S, Niida A, Yoshitake T,Asai K, Nakashima T,Tsurumaru D, Nishimuta Y, Muraki T, Sasaki T, Nomoto S, Mimori K, Honda H
- Organizer
  60th American Society for Radiation Oncology Annual Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K10397
[Presentation] Multiregional sequencing unveiled temporal dynamics of intratumor heterogeneity during colorectal cancer evolution2017
- Author(s)
  Atsuahi Niida
- Organizer
  International Conference on Translational Cancer Medicine held in cooperation with the Latin American Cooperative Oncology Group (LACOG)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K12773
[Presentation] がんの進化シミュレーション2017
- Author(s)
  新井田厚司
- Organizer
  第6回生命医薬情報学連合大会
- Data Source
  KAKENHI-PROJECT-17K12773
[Presentation] 大腸がんの進化と腫瘍内不均一性2017
- Author(s)
  新井田厚司
- Organizer
  2017年度生命科学系学会合同年次大会
- Data Source
  KAKENHI-PROJECT-17K12773
[Presentation] Genome-wide Copy Number Analysis of Chemoradiotherapy Response in Esophageal Squamous Cell Carcinoma.2016
- Author(s)
  Hirata H, Niida A, Ito S, Uchi R, Saito T, Terashima K, Ohga S, Sakamoto K, Hirakawa M, Honda H, Mimori K.
- Organizer
  The 1st Meeting of the Federaion of Asian Organization for Radiation Oncology
- Place of Presentation
  Kyoto
- Year and Date
  2016-11-25
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K10397
[Presentation] Genomic correlates of response to chemoradio-therapy in esophageal squamous cell carcinoma.2016
- Author(s)
  Hirata H, Ito S, Niida A, Uchi R, Saito T, Masuda T, Hayashi N, Kuroda Y, Eguchi H, Hirakawa M, Honda H, Mimori K
- Organizer
  第75回日本癌学会学術総会
- Place of Presentation
  横浜市
- Year and Date
  2016-10-06
- Data Source
  KAKENHI-PROJECT-16K10397

1. Mimori Koshi (50322748)

# of Collaborated Projects: 5 results

# of Collaborated Products: 18 results
2. 長山聡 (70362499)

# of Collaborated Projects: 4 results

# of Collaborated Products: 1 results
3. HIRATA Hidenari (90721267)

# of Collaborated Projects: 2 results

# of Collaborated Products: 11 results
4. 鈴木穣 (40323646)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. MIYANO SATORU (50128104)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
6. Yamamoto Kimiyo (70611078)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
7. YAO Ryoji (80291095)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
8. 島村徹平 (00623943)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
9. 白石友一 (70516880)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
10. PARK HEEWON (70756642)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
11. 山口類 (90380675)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
12. 片山琴絵 (40581195)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. 張耀中 (60817138)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
14. 井元清哉 (10345027)

# of Collaborated Projects: 1 results

# of Collaborated Products: 3 results
15. 玉田嘉紀 (80435495)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
16. 平川雅和 (20380454)

# of Collaborated Projects: 1 results

# of Collaborated Products: 2 results
17. 吉武忠正 (40452750)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 松本圭司 (40467907)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 浅井佳央里 (40635471)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 鶴丸大介 (90419565)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 西牟田雄祐 (10635220)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 塩山善之 (10323304)

# of Collaborated Projects: 1 results

# of Collaborated Products: 4 results
23. 内山和久 (80232867)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 岩嵜航 (30838959)

# of Collaborated Projects: 1 results

# of Collaborated Products: 1 results
25. 工藤進英 (70161643)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. 大津甫 (50827227)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. 宇野直輝 (60624781)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
28. 丸山玲緒 (60607985)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. 小嶋泰弘 (00881731)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
30. 大村洋文 (60767375)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
31. LOW SIEWKEE (40634720)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
32. MIZUNO Shinichi

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
33. TOSHIMA Takeo

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
34. 増田隆明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
35. 村上和成

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
36. 兒玉雅明

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
37. 山本健

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
38. 高橋純一

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
39. 吉住朋晴

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
40. 佐藤晋彰

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
41. 黒田陽介

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
42. 鶴田祐介

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

Niida Atsushi 新井田 厚司

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Massively parallel cancer evolution simulation to elucidate mechanisms of intratumor heterogeneity generationPrincipal Investigator

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Developing analysis tools of massively parallel cancer evolution simulation to understand intratumor heterogeneityPrincipal Investigator

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[Journal Article] Implementable assay for monitoring minimum residual disease after radical treatment for colorectal cancer.2024

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[Journal Article] Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer2023

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[Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023

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[Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023

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Niida Atsushi 新井田厚司

[Journal Article] Variant analysis of prostate　cancer in Japanese patients and a new attempt to predict related biological　pathways2020