Nakamura Keiji 中村佳司

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NAKAMURA Keiji 中村佳司

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Researcher Number	60706216
Other IDs
Affiliation (Current)	2025: 九州大学, 医学研究院, 講師
Affiliation (based on the past Project Information) *help	2022 – 2024: 九州大学, 医学研究院, 講師 2018 – 2021: 九州大学, 医学研究院, 助教 2017: 九州大学, 大学院医学研究院, 研究員 2016 – 2017: 九州大学, 医学研究院, 学術研究員 2016: 九州大学, 大学院・医学研究院, 学術研究員 2014 – 2015: 大阪大学, 微生物病研究所, 特任研究員(常勤)
Review Section/Research Field	Principal Investigator Basic Section 49050:Bacteriology-related / Bacteriology (including mycology) Except Principal Investigator Bacteriology (including mycology)
Keywords	Principal Investigator 腸管出血性大腸菌 / 気管支敗血症菌 / 志賀毒素転換ファージ / ファージ誘導 / 志賀毒素産生性大腸菌 / 比較ゲノム解析 / Sequence type / 血清型変換 / O抗原・H抗原 / 大腸菌 … More / ヘルパー/サテライトファージ / バクテリオファージ (ファージ) / Stx2ファージ / 志賀毒素(Stx)ファージ / 志賀毒素（Stx）ファージ / ヘルパーファージ / サテライトファージ / 志賀毒素ファージ / 感染動物モデル / 実験動物モデル / 発作性咳嗽 / 百日咳 / 付着因子 / I型分泌機構 / 二成分制御系 / バイオフィルム / ボルデテラ属細菌 … More Except Principal Investigator 気管支敗血症菌 / 百日咳菌 / 百日咳 / ゲノムアノテーション / メタゲノム / ゲノム多型 / ゲノムアッセンブル / スーパーコンピューター / メタゲノム解析 / 1細胞解析 / RNA-Seq / エピゲノム / リシーケンシング / 新規ゲノム配列決定 / 次世代DNAシーケンサー / 咳発作 Less

腸管出血性大腸菌における自発的プロファージ誘導の抑制機構の解明Principal Investigator
- Principal Investigator
  
  中村佳司
- Project Period (FY)
  2024 – 2026
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Kyushu University
Analysis of the serotype conversion in E. coli by large-scale genomic dataPrincipal Investigator
- Principal Investigator
  
  Nakamura Keiji
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Kyushu University
Analysis of inter-phage interaction and its impacts on the evolution of enterohemorrhagic E. coliPrincipal Investigator
- Principal Investigator
  
  Nakamura Keiji
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 49050:Bacteriology-related
- Research Institution
  Kyushu University
Functional analysis of a bacterial contributor to coughing fits in whooping coughPrincipal Investigator
- Principal Investigator
  
  Nakamura Keiji
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Kyushu University
Preparation of Bordetella pertussis that infects experimental animals by introduction of large DNA fragments from B. bronchiseptica
- Principal Investigator
  
  Horiguchi Yasuhiko
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Osaka University
Platform for Advanced Genome Science
- Principal Investigator
  
  KOHARA Yuji
- Project Period (FY)
  2016 – 2021
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas ― Platforms for Advanced Technologies and Research Resources
- Research Institution
  National Institute of Genetics
Analysis of a novel virulence factor produced by Bordetella bronchisepticaPrincipal Investigator
- Principal Investigator
  
  NAKAMURA Keiji
- Project Period (FY)
  2014 – 2015
- Research Category
  
  Grant-in-Aid for Young Scientists (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Osaka University
Analyses for the mechanism by which Bordetella pertussis causes paroxysmal coughing
- Principal Investigator
  
  Yasuhiko Horiguchi
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Bacteriology (including mycology)
- Research Institution
  Osaka University

All 2023 2022 2021 2020 2019 2018 2017 2016 2015 Other

All Journal Article Presentation Book

[Book] Methods in Molecular Biology, Gene Prediction2019
- Author(s)
  Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, Yasukazu Nakamura
- Pages
  215-226
- Total Pages
  284
- Publisher
  Springer Nature.
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] Gene Prediction Methods and Protocols2019
- Author(s)
  Tanizawa Y, Fujisawa T, Arita M, Nakamura Y.
- Pages
  215-226
- Total Pages
  283
- Publisher
  Humana, New York, NY
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] 次世代シークエンサーDRY解析教本改訂第2版2019
- Author(s)
  谷澤靖洋、中村保一
- Pages
  246-273
- Total Pages
  384
- Publisher
  学研プラス
- Data Source
  KAKENHI-PROJECT-16H06279
[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019
- Author(s)
  中村祐哉、山田拓司(福田真嗣編集)
- Pages
  107-111
- Total Pages
  147
- Publisher
  羊土社
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Global population structure, genomic diversity and carbohydrate fermentation characteristics of clonal complex 119 (CC119), an understudied Shiga toxin-producing E. coli (STEC) lineage including O165:H25 and O172:H252023
- Author(s)
  Nakamura Keiji、Seto Kazuko、Lee Kenichi、Ooka Tadasuke、Gotoh Yasuhiro、Taniguchi Itsuki、Ogura Yoshitoshi、Mainil Jacques Georges、Pi?rard Denis、Harada Tetsuya、Etoh Yoshiki、Ueda Saori、Hamasaki Mitsuhiro、Isobe Junko、Kimata Keiko、Narimatsu Hiroshi、Yatsuyanagi Jun、Ohnishi Makoto、Iyoda Sunao、Hayashi Tetsuya
- Journal Title
  
  Microbial Genomics
  
  Volume: 9 Issue: 3 Pages: 000959-000959
- DOI
  10.1099/mgen.0.000959
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K07506, KAKENHI-PROJECT-21K07006, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K21527
[Journal Article] Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions2022
- Author(s)
  Horoiwa Mizuki、Nakamura Takashi、Yuasa Hideaki、Kajitani Rei、Ameda Yosuke、Sasaki Tetsuro、Taninaka Hiroki、Kikuchi Taisei、Yamakita Takehisa、Toyoda Atsushi、Itoh Takehiko、Yasuda Nina
- Journal Title
  
  Frontiers in Marine Science
  
  Volume: 8 Pages: 688139-688139
- DOI
  10.3389/fmars.2021.688139
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19J21342, KAKENHI-PROJECT-16H06279
[Journal Article] A meta-analysis of genome-wide association studies using Japanese and Taiwanese has revealed novel loci associated with gout susceptibility2022
- Author(s)
  Chang Shun-Jen、Toyoda Yu、Kawamura Yusuke、Nakamura Takahiro、Nakatochi Masahiro、Nakayama Akiyoshi、et al.
- Journal Title
  
  Human Cell
  
  Volume: 35 Issue: 2 Pages: 767-770
- DOI
  10.1007/s13577-021-00665-2
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20K23152, KAKENHI-PROJECT-20H00566, KAKENHI-PROJECT-20H00568, KAKENHI-PROJECT-21KK0173, KAKENHI-PROJECT-16H06277, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-23K21618, KAKENHI-PROJECT-22H04923
[Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation2021
- Author(s)
  Nakamura Haruna、Aibara Mitsuto、Kajitani Rei、Mrosso Hillary D J、Mzighani Semvua I、Toyoda Atsushi、Itoh Takehiko、Okada Norihiro、Nikaido Masato
- Journal Title
  
  Molecular Biology and Evolution
  
  Volume: in press Issue: 8 Pages: 3111-3125
- DOI
  10.1093/molbev/msab084
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20KK0167, KAKENHI-PROJECT-20J13861, KAKENHI-PROJECT-16H06279
[Journal Article] The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H192021
- Author(s)
  Nishida Ruriko、Nakamura Keiji、Taniguchi Itsuki、et al.
- Journal Title
  
  Microbial Genomics
  
  Volume: 7 Issue: 12 Pages: 000716-000716
- DOI
  10.1099/mgen.0.000716
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-20H00530, KAKENHI-PROJECT-20H03486, KAKENHI-PROJECT-20K07506, KAKENHI-PROJECT-21K07006, KAKENHI-PROJECT-20K21527
[Journal Article] Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy2021
- Author(s)
  MASAKI NAKAMURA, SHUN-ICHIRO KAGEYAMA, MASAHIDE SEKI, AYAKO SUZUKI, MASAYUKI OKUMURA, HIDEHIRO HOJO, ATSUSHI MOTEGI and TETSUO AKIMOTO
- Journal Title
  
  ANTICANCER RESEARCH
  
  Volume: 41 Issue: 2 Pages: 829-834
- DOI
  10.21873/anticanres.14835
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K15611, KAKENHI-PROJECT-16H06279
[Journal Article] Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy2021
- Author(s)
  Hiroki Yamaguchi, Shin Goto, Nao Takahashi, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Koichi Higashi, Hiroshi Mori, Yukio Nakamura, Arata Horii, Ken Kurokawa, Ichiei Narita
- Journal Title
  
  Nephrol Dial Transplant.
  
  Volume: ３６ Issue: 1 Pages: 75-86
- DOI
  10.1093/ndt/gfaa223
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K09372, KAKENHI-PROJECT-20K08628, KAKENHI-PROJECT-18K08234, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-19H03674
[Journal Article] CTCF looping is established during gastrulation in medaka embryos2021
- Author(s)
  Ryohei Nakamura, Yuichi Motai, Masahiko Kumagai, Candice L. Wike, Haruyo Nishiyama, Yoichiro Nakatani, Neva C. Durand, Shinichi Morishita, Hiroyuki Takeda, et al.
- Journal Title
  
  Genome Research
  
  Volume: 31 Issue: 6 Pages: 968-980
- DOI
  10.1101/gr.269951.120
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Collective nuclear behavior shapes bilateral nuclear symmetry for subsequent left-right asymmetric morphogenesis in Drosophila2021
- Author(s)
  Shin Dongsun、Nakamura Mitsutoshi、Morishita Yoshitaka、Eiraku Mototsugu、Yamakawa Tomoko、Sasamura Takeshi、Akiyama Masakazu、Inaki Mikiko、Matsuno Kenji
- Journal Title
  
  Development
  
  Volume: 148 Issue: 18 Pages: 1-12
- DOI
  10.1242/dev.198507
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21H02488, KAKENHI-PROJECT-21K06188, KAKENHI-PROJECT-16H06279
[Journal Article] Sparsely methylated mitochondrial cell free DNA released from cardiomyocytes contributes to systemic inflammatory response accompanied by atrial fibrillation2021
- Author(s)
  Yamazoe Masahiro、Sasano Tetsuo、Ihara Kensuke、Takahashi Kentaro、Nakamura Wakana、Takahashi Naomi、Komuro Hiroaki、Hamada Satomi、Furukawa Tetsushi
- Journal Title
  
  Scientific Reports
  
  Volume: 11 Issue: 1 Pages: 5837-5837
- DOI
  10.1038/s41598-021-85204-7
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K08536, KAKENHI-PROJECT-18H02803, KAKENHI-PROJECT-20J13923, KAKENHI-PROJECT-16H06279
[Journal Article] Prophages integrating into prophages: a mechanism to accumulate type III secretion effector genes and duplicate Shiga toxin-encoding prophages in Escherichia coli2021
- Author(s)
  Nakamura K, Ogura Y, Gotoh Y, Hayashi T.
- Journal Title
  
  PLoS Pathogens
  
  Volume: -
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K07116
[Journal Article] Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis2021
- Author(s)
  Hideaki Yuasa, Rei Kajitani, Yuta Nakamura, Kazuki Takahashi, Miki Okuno, Fumiya Kobayashi, Takahiro Shinoda, Atsushi Toyoda, Yutaka Suzuki, Nalinee Thongtham, Zac Forsman, Omri Bronstein, Davide Seveso, Enrico Montalbetti, Coralie Taquet, Gal Eyal, Nina Yasuda, Takehiko Itoh
- Journal Title
  
  DNA Research
  
  Volume: 28 Issue: 4
- DOI
  10.1093/dnares/dsab012
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19H03206, KAKENHI-PROJECT-16H06279
[Journal Article] Insights into the genomic evolution of insects from cricket genomes2021
- Author(s)
  Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen A. Barnett, Sumihare Noji, Taro Mito & Cassandra G. Extavour
- Journal Title
  
  Communications Biology
  
  Volume: 4 Issue: 1 Pages: 733-733
- DOI
  10.1038/s42003-021-02197-9
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06184, KAKENHI-PROJECT-19K06691, KAKENHI-PROJECT-21K06121, KAKENHI-PROJECT-16H06279
[Journal Article] Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system2021
- Author(s)
  Miyuki Iwasaki Katsuyuki T. Yamato John L. Bowman Takayuki Kohchi et al
- Journal Title
  
  Current Biology
  
  Volume: 31 Issue: 24 Pages: 5522-5532.e7
- DOI
  10.1016/j.cub.2021.10.023
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K16166, KAKENHI-PUBLICLY-20H04884, KAKENHI-ORGANIZER-20H05778, KAKENHI-PLANNED-20H05780, KAKENHI-PROJECT-21J15550, KAKENHI-PROJECT-21K06228, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17H07424, KAKENHI-PROJECT-22KJ1701, KAKENHI-ORGANIZER-19H05670, KAKENHI-PLANNED-19H05675
[Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression2020
- Author(s)
  Ito Yoichiro、Terai Goro、Ishigami Misa、Hashiba Noriko、Nakamura Yasuyuki、Bamba Takahiro、Kumokita Ryota、Hasunuma Tomohisa、Asai Kiyoshi、Ishii Jun、Kondo Akihiko
- Journal Title
  
  Nucleic Acids Research
  
  Volume: 48 Issue: 22 Pages: 13000-13012
- DOI
  10.1093/nar/gkaa1066
- NAID
  120006954873
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K15734, KAKENHI-PROJECT-16H06279
[Journal Article] Staphylococcus Agr virulence is critical for epidermal colonization and associates with atopic dermatitis development2020
- Author(s)
  Nakamura Y, Takahashi H, Takaya A, Inoue Y, Katayama Y, Kusuya Y, Shoji T, Takada S, Nakagawa S, Oguma R, Saito N, Ozawa N, Nakano T, Yamaide F, Dissanayake E, Suzuki S, Villaruz A, Varadarajan S, Matsumoto M, Kobayashi T, Kono M, Sato Y, Akiyama M, Otto M, Matsue H, Nunez G, Shimojo N.
- Journal Title
  
  Sci Transl Med.
  
  Volume: 8 Issue: 551 Pages: 4068-4068
- DOI
  10.1126/scitranslmed.aay4068
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K16138, KAKENHI-PROJECT-18K07102, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-20H03701
[Journal Article] Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels.2020
- Author(s)
  Higashino T, Morimoto K, Nakaoka H, Toyoda Y, Kawamura Y, Shimizu S, Nakamura T, Hosomichi K, Nakayama A, Ooyama K, Ooyama H, Shimizu T, Ueno M, Ito T, Tamura T, Naito M, Nakashima H, Kawaguchi M, Takao M, Kawai Y, Osada N, Ichida K, Yamamoto K, Suzuki H, Shinomiya N, Inoue I, Takada T, Matsuo H.
- Journal Title
  
  Ann Rheum Dis.
  
  Volume: 79(1) Issue: 1 Pages: 164-166
- DOI
  10.1136/annrheumdis-2019-216044
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KK0247, KAKENHI-PUBLICLY-19H05344, KAKENHI-PROJECT-16H01808, KAKENHI-PROJECT-17H04128, KAKENHI-PROJECT-18H02685, KAKENHI-PROJECT-16H06279, KAKENHI-PLANNED-18H05511
[Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H282020
- Author(s)
  Nakamura K., Murase K., Sato MP., Toyoda A., Itoh T., Mainil JG., Pierard D., Yoshino S., Kimata K., Isobe J., Seto K., Etoh Y., Narimatsu H., Saito S., Yatsuyanagi J., Lee K., Iyoda S., Ohnishi M., Ooka T., Gotoh Y., Ogura Y., Hayashi T.
- Journal Title
  
  Microbial Genomics
  
  Volume: 6 Issue: 1
- DOI
  10.1099/mgen.0.000323
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K07116, KAKENHI-PROJECT-16H06279
[Journal Article] Combination of KRAS and SMAD4 mutations in formalin‐fixed paraffin‐embedded tissues as a biomarker for pancreatic cancer2020
- Author(s)
  Yokose Takahiro、Kitago Minoru、Matsuda Sachiko、Sasaki Yasushi、Masugi Yohei、Nakamura Yuki、Shinoda Masahiro、Yagi Hiroshi、Abe Yuta、Oshima Go、Hori Shutaro、Yusuke Fujita、Nakano Yutaka、Endo Yutaka、Abe Kodai、Tokino Takashi、Kitagawa Yuko
- Journal Title
  
  Cancer Science
  
  Volume: 111 Issue: 6 Pages: 2174-2182
- DOI
  10.1111/cas.14425
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-18K08552, KAKENHI-PROJECT-16H06279
[Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs2020
- Author(s)
  Udagawa Chihiro、Sasaki Yasushi、Tanizawa Yasuhiro、Suemizu Hiroshi、Ohnishi Yasuyuki、Nakamura Yasukazu、Tokino Takashi、Zembutsu Hitoshi
- Journal Title
  
  PLOS ONE
  
  Volume: 15 Issue: 9 Pages: e0239614-e0239614
- DOI
  10.1371/journal.pone.0239614
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-19K07645, KAKENHI-PROJECT-20K08390, KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin2020
- Author(s)
  Montgomery SA, Tanizawa Y, Galik B, Wang N, Ito T, Mochizuki T, Akimcheva S, Bowman JL, Cognat V, Drouard L, Ekker H, Houng SF, Kohchi T, Lin SS, Liu LYD, Nakamura Y, Valeeva LR, Shakirov EV, Shippen DE, Wei WL, Yagura M, Yamaoka S, Yamato KT, Liu C, Berger F.
- Journal Title
  
  Current Biology
  
  Volume: 30 Issue: 4 Pages: 573-588
- DOI
  10.1016/j.cub.2019.12.015
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06285, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-19H04860, KAKENHI-PLANNED-19H05675, KAKENHI-PROJECT-17H07424
[Journal Article] Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2020
- Author(s)
  Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 37-37
- DOI
  10.1038/s41598-019-56881-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K19340, KAKENHI-PROJECT-16H06279
[Journal Article] Maternal almondex, a neurogenic gene, is required for proper subcellular Notch distribution in early Drosophila embryogenesis.2020
- Author(s)
  Das P., Salazar J. L., Li-Kroeger D., Yamamoto S., Nakamura M., Sasamura T., Inaki M., Masuda W., Kitagawa M., Yamakawa T., Matsuno K.
- Journal Title
  
  Development, Growth & Differentiation
  
  Volume: 62 Issue: 1 Pages: 80-93
- DOI
  10.1111/dgd.12639
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-19K07374, KAKENHI-INTERNATIONAL-15K21726, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-16K08577
[Journal Article] Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea2020
- Author(s)
  Ishimaru Kai、Sasaki Mari、Narimatsu Hiroshi、Arimizu Yoko、Gotoh Yasuhiro、Nakamura Keiji、Hayashi Tetsuya、Ogura Yoshitoshi
- Journal Title
  
  Open Forum Infectious Diseases
  
  Volume: 7 Issue: 1
- DOI
  10.1093/ofid/ofaa021
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila.2019
- Author(s)
  Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Matsuyama, Y., and Matsuno, K.
- Journal Title
  
  Genes to Cells
  
  Volume: 24 (3) Issue: 3 Pages: 214-230
- DOI
  10.1111/gtc.12669
- Peer Reviewed
- Data Source
  KAKENHI-ORGANIZER-15H05856, KAKENHI-PROJECT-16J01027, KAKENHI-INTERNATIONAL-15K21726, KAKENHI-PLANNED-15H05863, KAKENHI-PROJECT-16H06279
[Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes.2019
- Author(s)
  Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
- Journal Title
  
  DNA Res.
  
  Volume: 26 Issue: 5 Pages: 391-398
- DOI
  10.1093/dnares/dsz017
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Malignant paraganglioma of posterior mediastinum; a case report with genetic analysis2019
- Author(s)
  Adachi Y, Mita H, Sasaki Y, Himori R, Onodera K, Nakamura M, Kikuchi T, Yamashita K, Yukinari Yoshida Y, Ishii Y, Endo T
- Journal Title
  
  Mol Clin Oncol
  
  Volume: 10 Pages: 10-16
- DOI
  10.3892/mco.2018.1758
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K09354, KAKENHI-PROJECT-16H06279
[Journal Article] O-antigen biosynthesis gene clusters of Escherichia albertii: their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method.2019
- Author(s)
  Ooka T, Seto K, Ogura Y, Nakamura K, Iguchi A, Gotoh Y, Honda M, Etoh Y, Ikeda T, Sugitani W, Konno T, Kawano K, Imuta N, Yoshiie K, Hara-Kudo Y, Murakami K, Hayashi T, Nishi J
- Journal Title
  
  Microb Genom
  
  Volume: 5（11） Issue: 11
- DOI
  10.1099/mgen.0.000314
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17K10118, KAKENHI-PROJECT-16H05845, KAKENHI-PROJECT-16H06279
[Journal Article] Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice.2019
- Author(s)
  Nakajima K, Ono M, Radovic U, Dizdarevic S, Tomizawa SI, Kuroha K, Nagamatsu G, Hoshi I, Matsunaga R, Shirakawa T, Kurosawa T, Miyazaki Y, Seki M, Suzuki Y, Koseki H, Nakamura M, Suda T, Ohbo K.
- Journal Title
  
  Disease Models & Mechanisms
  
  Volume: 12 Pages: 40139-40139
- DOI
  10.1242/dmm.040139
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K06261, KAKENHI-PROJECT-19K23831, KAKENHI-PROJECT-18H05284, KAKENHI-PROJECT-16H06279
[Journal Article] Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.2019
- Author(s)
  Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Dopfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y
- Journal Title
  
  Genome Research
  
  Volume: 29 Issue: 9 Pages: 1495-1505
- DOI
  10.1101/gr.249268.119
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K09183, KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-16H06279
[Journal Article] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2018
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Journal Title
  
  Bioinformatics
  
  Volume: 34 Issue: 6 Pages: 1037-1039
- DOI
  10.1093/bioinformatics/btx713
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment2018
- Author(s)
  Ikawa, H., Chen, C.P., Sikma, M., Yoshimoto, M., Sakai, H., Tokida, T., Usui, Y., Nakamura, H., Ono, K., Maruyama, M., Watanabe, T., Kuwagata, T., and Hasegawa, T.
- Journal Title
  
  Global Change Biology
  
  Volume: 24 Issue: 3 Pages: 1321-1341
- DOI
  10.1111/gcb.13981
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17H03896, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic Characterization of β-Glucuronidase?Positive Escherichia coli O157:H7 Producing Stx2a2018
- Author(s)
  Ogura Yoshitoshi、Seto Kazuko、Morimoto Yo、Nakamura Keiji、Sato Mitsuhiko P.、Gotoh Yasuhiro、Itoh Takehiko、Toyoda Atsushi、Ohnishi Makoto、Hayashi Tetsuya
- Journal Title
  
  Emerging Infectious Diseases
  
  Volume: 24 Issue: 12 Pages: 2219-2227
- DOI
  10.3201/eid2412.180404
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-17H04077, KAKENHI-PROJECT-17K17933, KAKENHI-PROJECT-16H06279
[Journal Article] Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri2017
- Author(s)
  Yasuhiro TANIZAWA, Hisami KOBAYASHI, Eli KAMINUMA, Mitsuo SAKAMOTO, Moriya OHKUMA, Yasukazu NAKAMURA, Masanori ARITA, Masanori TOHNO
- Journal Title
  
  Biosci Microbiota Food Health.
  
  Volume: 36 Issue: 3 Pages: 129-134
- DOI
  10.12938/bmfh.16-026
- NAID
  130005759236
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.2017
- Author(s)
  Bowman J, Kouchi T,..(106名）..Yokoyama R, ..(4名)
- Journal Title
  
  Cell
  
  Volume: 171 Issue: 2 Pages: 287-304
- DOI
  10.1016/j.cell.2017.09.030
- NAID
  120006353839
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16K07389, KAKENHI-PROJECT-16K07398, KAKENHI-PROJECT-16K14742, KAKENHI-PROJECT-17K19374, KAKENHI-PROJECT-17K19412, KAKENHI-PROJECT-17K17595, KAKENHI-PROJECT-15KK0254, KAKENHI-INTERNATIONAL-15K21750, KAKENHI-PLANNED-15H05956, KAKENHI-PUBLICLY-16H01229, KAKENHI-PUBLICLY-16H01460, KAKENHI-PUBLICLY-17H05441, KAKENHI-PUBLICLY-17H05845, KAKENHI-WRAPUP-17H06066, KAKENHI-PLANNED-17H06472, KAKENHI-PLANNED-25113005, KAKENHI-PLANNED-25113009, KAKENHI-PROJECT-25221103, KAKENHI-PROJECT-17H01437, KAKENHI-PROJECT-15H04382, KAKENHI-PROJECT-15H04386, KAKENHI-PROJECT-15H04391, KAKENHI-PROJECT-15H04628, KAKENHI-PROJECT-17H07333, KAKENHI-PROJECT-16J04519, KAKENHI-PROJECT-15K07104, KAKENHI-PROJECT-16K13087, KAKENHI-INTERNATIONAL-15K21758, KAKENHI-PROJECT-16H06279, KAKENHI-PUBLICLY-17H05841, KAKENHI-PROJECT-17H03691, KAKENHI-PROJECT-17H03967
[Journal Article] Protective effects of in vivo-expressed autotransporters against Bordetella pertussis infection2017
- Author(s)
  Suzuki Koichiro、Shinzawa Naoaki、Ishigaki Keisuke、Nakamura Keiji、Abe Hiroyuki、Fukui-Miyazaki Aya、Ikuta Kazuyoshi、Horiguchi Yasuhiko
- Journal Title
  
  Microbiology and Immunology
  
  Volume: 61 Issue: 9 Pages: 371-379
- DOI
  10.1111/1348-0421.12504
- NAID
  40021326030
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K19124, KAKENHI-PROJECT-16K19125
[Journal Article] Comprehensive genetic exploration of selective tooth agenesis of mandibular incisors by exome sequencing2017
- Author(s)
  Yamaguchi T, Hosomichi K, Yano K, Kim Y, Nakaoka H, Kimura R, Otsuka H, Nonaka N, Haga S, Takahashi M, Shirota T, Kikkawa Y, Yamada A, Kamijo R, Park SB, Nakamura M, Maki K, Inoue I
- Journal Title
  
  Hum Genome Variation
  
  Volume: 印刷中 Issue: 1 Pages: 17005-17005
- DOI
  10.1038/hgv.2017.5
- NAID
  120006891152
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-16H06502, KAKENHI-PROJECT-15H02373, KAKENHI-PROJECT-15H05016, KAKENHI-PROJECT-26430195, KAKENHI-PROJECT-15K20367, KAKENHI-PROJECT-15K11051, KAKENHI-PROJECT-16K15782, KAKENHI-PROJECT-16H06279, KAKENHI-PROJECT-17K19804, KAKENHI-PROJECT-17K17089, KAKENHI-PROJECT-25251043, KAKENHI-PROJECT-16K15843
[Journal Article] Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish2017
- Author(s)
  Napo K. M. Cheung, Ryohei Nakamura, Ayako Uno, Masahiko Kumagai, Hiroto S, Fukushima, Shinichi Morishita, Hiroyuki Takeda
- Journal Title
  
  PLOS Genetics
  
  Volume: 13 Issue: 12 Pages: e1007123-e1007123
- DOI
  10.1371/journal.pgen.1007123
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Centromere evolution and CpG methylation during vertebrate speciation2017
- Author(s)
  Kazuki Ichikawa, Shingo Tomioka, Yuta Suzuki, Ryohei Nakamura, Koichiro Doi, Jun Yoshimura, Masahiko Kumagai, Yusuke Inoue, Yui Uchida, Naoki Irie, Hiroyuki Takeda* & Shinich Morishita*
- Journal Title
  
  Nature Communications
  
  Volume: 1833 Issue: 1 Pages: 1722-1730
- DOI
  10.1038/s41467-017-01982-7
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PLANNED-17H06387, KAKENHI-PROJECT-15H05603, KAKENHI-PROJECT-15J03645, KAKENHI-PROJECT-16H06279
[Journal Article] Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts2017
- Author(s)
  Nakamura Ryohei、Uno Ayako、Kumagai Masahiko、Morishita Shinichi、Takeda Hiroyuki
- Journal Title
  
  Epigenetics & Chromatin
  
  Volume: 10 Issue: 1 Pages: 44-44
- DOI
  10.1186/s13072-017-0152-2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16K20975, KAKENHI-PROJECT-16H06279
[Journal Article] The bvg-repressed gene brtA, encoding biofilm-associated surface adhesin, is expressed during host infection by Bordetella bronchiseptica.2016
- Author(s)
  Nishikawa S, Shinzawa N, Nakamura K, Ishigaki K, Abe H, Horiguchi Y.
- Journal Title
  
  Microbiol Immunol.
  
  Volume: 60 Issue: 2 Pages: 93-105
- DOI
  10.1111/1348-0421.12356
- NAID
  40020747667
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26860286, KAKENHI-PROJECT-26860288, KAKENHI-PROJECT-26293096, KAKENHI-PROJECT-26460525
[Journal Article] <b>Methods for analyzing next-generation sequencing dataVI. genome assembly </b>2016
- Author(s)
  谷澤靖洋、神沼英里、中村保一、清水謙多郎、門田幸二
- Journal Title
  
  Japanese Journal of Lactic Acid Bacteria
  
  Volume: 27 Issue: 1 Pages: 41-52
- DOI
  10.4109/jslab.27.41
- NAID
  130005628247
- ISSN
  1343-327X, 2186-5833
- Language
  Japanese
- Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Assessing Cell-to-Cell DNA Methylation Variability on Individual Long Reads.2016
- Author(s)
  Qu W, Tsukahara T, Nakamura R, Yurino H, Hashimoto S, Tsuji S, Takeda H, Morishita S.
- Journal Title
  
  Sci Rep.
  
  Volume: 6 Issue: 1 Pages: 21317-21317
- DOI
  10.1038/srep21317
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] DFAST and DAGA: web-based integrated genome annotation tools and resources2016
- Author(s)
  Tanizawa Y, Fujisawa T, Kamimuma E, Nakamura Y, Arita M.
- Journal Title
  
  Bioscience of Microbiota, Food and Health
  
  Volume: 35 Issue: 4 Pages: 173-184
- DOI
  10.12938/bmfh.16-003
- NAID
  130005250038
- ISSN
  2186-3342
- Language
  English
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-16H06279
[Journal Article] Polymorphisms Influencing Expression of Dermonecrotic Toxin in Bordetella bronchiseptica.2015
- Author(s)
  Okada K, Abe H, Ike F, Ogura Y, Hayashi T, Fukui-Miyazaki A, Nakamura K, Shinzawa N, Horiguchi Y.
- Journal Title
  
  PLoS One
  
  Volume: 10 Issue: 2 Pages: e0116604-e0116604
- DOI
  10.1371/journal.pone.0116604
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25670212, KAKENHI-PROJECT-26293096, KAKENHI-PROJECT-26460525, KAKENHI-PROJECT-26670217, KAKENHI-PROJECT-26860286
[Journal Article] Detection of genes expressed in Bordetella bronchiseptica colonizing rat trachea by in vivo expressed-tag immunoprecipitation method.2015
- Author(s)
  Abe H, Kamitani S, Fukui-Miyazaki A, Shinzawa N, Nakamura K, and Horiguchi Y.
- Journal Title
  
  Microbiology and Immunology
  
  Volume: 印刷中 Issue: 5 Pages: 249-261
- DOI
  10.1111/1348-0421.12247
- NAID
  40020479086
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-25460529, KAKENHI-PROJECT-26460525, KAKENHI-PROJECT-26293096
[Presentation] 下気道におけるM細胞の分化機構の解明2022
- Author(s)
  木村俊介, 山田恭央, 中村有孝, 河合真悟, 長谷耕二
- Organizer
  第6回日本骨免疫学会ウィンタースクール
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 卵を食べるシクリッドの系統的起源2022
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 肥厚した唇を持つヴィクトリア湖シクリッドの進化史推定2022
- Author(s)
  中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本動物学会関東支部第74回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物統合データベースMicrobeDB. jpを用いたマイクロバイオーム研究への応用2022
- Author(s)
  森宙史, 藤澤貴智, 西出浩世, 矢口貴志, 高橋弘喜, 中川善一, 山田拓司, 内山郁夫, 中村保一, 黒川顕
- Organizer
  第16回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Repeated translocation of a supergene underlying rapid sex chromosome turnover(転移型の性決定領域が性染色体の急速な置換をもたらす)2022
- Author(s)
  Ahammad Kabir, Risa Ieda, Sho Hosoya, Daigaku Fujikawa, Kazufumi Atsumi, Shota Tajima, Aoi Nozawa, Takashi Koyama, Shotaro Hirase, Osamu Nakamura, Mitsutaka Kadota, Osamu Nishimura, Shigehiro Kuraku, Yasukazu Nakamura, Hisato Kobayashi, Atsushi Toyoda, Satoshi Tasumi, Kiyoshi Kikuchi
- Organizer
  令和4年度日本水産学会春季大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 染色体レベルゲノムアセンブルとそのDB2021
- Author(s)
  中村保一
- Organizer
  第4回植物インフォマティクス研究会・年会(2021)
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ユーストマの全ゲノム解読とDNAマーカー開発2021
- Author(s)
  川勝恭子, 豊田敦, 永野惇, 川勝泰二, 中野善公, 今村仁, 福田直子, 久松完, 山口博康, 望月孝子, 谷澤靖洋, 坂本美佳, 中村保一
- Organizer
  日本育種学会第139回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 卵泥棒の起源からシクリッドの適応放散を探る2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  第23回日本進化学会年大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 菌血症における病原菌の患者内多様性の解明に向けた解析パイプラインの構築2021
- Author(s)
  園田大輝, 後藤恭宏, 西田留梨子, 下野信行, 中村佳司, 林哲也
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] The genome biology of Parmales (Bolidophyceae), a sister group of diatomsThe genome biology of Parmales (Bolidophyceae), a sister group of diatoms.2021
- Author(s)
  伴広輝, 佐藤晋也, 吉川伸哉, 山田和正, 中村洋路, 一宮睦雄, 遠藤寿, Romain Blanc-Mathieu, 桑田晃, 緒方博之
- Organizer
  Molecular life of diatoms 6
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] シリカ被殻を持つ真核藻類 : パルマ藻・珪藻の比較ゲノム解析2021
- Author(s)
  伴広輝、桑田晃、中村洋路、佐藤晋也、吉川伸哉、山田和正、一宮睦雄、緒方博之
- Organizer
  日本藻類学会第45回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] プロファージ内プロファージによる大腸菌への3型分泌エフェクターと志賀毒素遺伝子の蓄積メカニズム2021
- Author(s)
  中村佳司、小椋義俊、後藤恭弘、林哲也
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] バイオエコノミーに資する染色体レベルゲノム情報の提供2021
- Author(s)
  中村保一
- Organizer
  第38回日本植物バイオテクノロジー学会(つくば)大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : development of the genome and expression database for the liverwort Marchantia polymorphaMarpolbase : ゼニゴケのための遺伝子情報および発現量データベースの開発2021
- Author(s)
  谷澤靖洋, 川村昇吾, 矢倉勝, 坂本美佳, 望月孝子, 山岡尚平, 西浜竜一, 大和勝幸, 河内孝之, Liu, Chang, Berger, Frédéric, 中村保一
- Organizer
  第62回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 腸管出血性大腸菌O26:H11におけるStxファージのゲノム多様性とダイナミクス2021
- Author(s)
  矢野文悟、中村佳司、谷口愛樹、後藤恭弘、小椋義俊、林哲也
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] 全ゲノムから迫るビクトリア湖産シクリッドHaplochromis sp. “matumbi hunter”の集団史2021
- Author(s)
  今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人
- Organizer
  日本遺伝学会第93回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] プロファージ内プロファージによる大腸菌への3型分泌エフェクターと志賀毒素遺伝子の蓄積メカニズム2021
- Author(s)
  中村佳司、小椋義俊、後藤恭弘、林哲也
- Organizer
  第15回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] Evolutionary history of egg hunting cichlids in Lake Victoria2021
- Author(s)
  Imamoto, M., Nakamura, H., Aibara, M., Ito, Takehiko. and Nikaido, M.
- Organizer
  The 2nd AsiaEvo Conference
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 宿主ショウジョウバエの発生を操作する内部寄生蜂Asobara japoniraの毒の同定を目指して2021
- Author(s)
  島田裕子, 上山拓己, 森一葉, 藤井美月, 清家和樹, 片山南美, 竹股ひとみ, 谷直紀, 中村輝, 田中裕之, 豊田敦, 伊藤武彦, 丹羽隆介
- Organizer
  第67回トキシンシンポジウム
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物統合データベース MicrobeDB. jp version 3とマイクロバイオーム解析2021
- Author(s)
  森宙史、藤澤貴智、西出浩世、矢口貴志、高橋弘喜、中川善一、山田拓司、内山郁夫、中村保一、黒川顕
- Organizer
  第15回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 黄色ブドウ球菌はAgrのサイレンシングにより院内感染でのパーシステンスとコンピテンシーを獲得する2021
- Author(s)
  山崎由里子, 田中麻里, 楠屋陽子, 青山礼華, 大曽根義輝, 高橋弘喜, 中村悠美, 高屋明子
- Organizer
  第94回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ユーストマの全ゲノム解読とDNAマーカー開発(学会のプレスリリース課題に選定されたとのことhttps://www.nacos.com/jsb/06/06press.html)2021
- Author(s)
  川勝恭子、豊田敦、永野惇、川勝泰二、中野善公、今村仁、福田直子、久松完、山口博康、望月孝子、谷澤靖洋、坂本美佳、中村保一
- Organizer
  日本育種学会第139回講演会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] A hijack strategy of an endoparasitoid wasp on Drosophila larvae : Toward the Identification of venom components in Asobara japonica2021
- Author(s)
  Shimada, Yuko, Kamiyama, Takumi, Tani, Naoki, Mori, Hitoha, Katayama, Minami, Takemata, Hitomi, Fujii, Mitsuki, Kuwabara, Takayoshi, Seike, Kazuki, Nakamura, Akira, Niwa, Ryusuke
- Organizer
  第14回日本ショウジョウバエ研究集会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 様々なヘテロ接合度の生物を用いたハプロイドセット構築のためのゲノムアセンブリ手法の評価2021
- Author(s)
  望月孝子, 坂本美佳, 谷澤靖洋, 中山卓郎, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第44回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Complete genomes of plants for smart agriculture.2021
- Author(s)
  中村保一
- Organizer
  International Congress on Emerging Fields and Exploratory Research in Optics and Photonics 2021
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖固有シクリッドHaplochromis sp. “matumbi hunter”の遺伝的多様性2020
- Author(s)
  今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類 : パルマ藻のゲノム解析2020
- Author(s)
  桑田晃、中村洋路、斉藤憲治、伴広輝、緒方博之、佐藤晋也、吉川伸哉、一宮睦雄
- Organizer
  日本藻類学会第44回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 志賀毒素産生性大腸菌O145:H28におけるプロファージとプラスミドのダイナミクス2020
- Author(s)
  中村佳司、村瀬一典、佐藤光彦、後藤恭宏、小椋義俊、林哲也
- Organizer
  第14回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] 染色体レベルのゼニゴケ参照ゲノムの構築とゲノムデータベースの開発2020
- Author(s)
  谷澤靖洋, 矢倉勝, 坂本美佳, 望月孝子, Montgomery, Sean A., Galik, Bence, 山岡尚平, 西浜竜一, 大和勝幸, 河内孝之, Berger, Frédéric, Liu, Chang, 中村保一
- Organizer
  第61回日本植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 放線菌Streptomyces avermitilisのカルコフォア生産制御機構の解析2020
- Author(s)
  萩谷祥、Salvatore Cosentino、按田瑞恵、後藤恭宏、中村佳司、林哲也、岩崎渉、上田賢志、髙野英晃
- Organizer
  日本農芸化学会2020年度大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明2020
- Author(s)
  中村遥奈、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本遺伝学会第92回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Identification of Cell-Free DNA profile in oligometastatic colorectal cancer2020
- Author(s)
  Masaki Nakamura
- Organizer
  ESTRO 2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明2020
- Author(s)
  中村遥奈、畑島諒、相原光人、豊田敦、伊藤武彦、二階堂雅人
- Organizer
  日本進化学会第22回オンライン大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromosome-level assembly of liverwort Marchantia polymorpha and updates of the genome database MarpolBase.2020
- Author(s)
  Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Freédéric Berger
- Organizer
  Plant and Animal Genomics 2020
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genetic factor which aggravates hyperuricemia into gout was identified by genome-wide association study2019
- Author(s)
  Yusuke Kawamura, Hirofumi Nakaoka, Akiyoshi Nakayama, Yukinori Okada, Ken Yamamoto, Hiroshi Ooyama, Shimizu Seiko, Mayuko Nakajima, Takahiro Nakamura, Masahiro Nakatochi, Mitsuhiro Yokota, TakadaTappei, Kamatani Yoichiro, Takahashi Atushi, Kenji Wakai, Michiaki Kubo, Kimiyoshi Ichida, Inoue Ituro, Nariyoshi Shinomiya, Hirotaka Matsuo
- Organizer
  日本人類遺伝学会第64回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケゲノムのアップデートにまつわるetc.2019
- Author(s)
  谷澤靖洋, 矢倉勝, 望月孝子, 坂本美佳, 山岡尚平, 西浜竜一, Sean A. Montgomery, Chang Liu, Bence Galik, Frederic Berger, 大和勝幸, 河内孝之, 中村保一
- Organizer
  第2回植物インフォマティクス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケMarchantiapolymorphaと珪藻Nitzschiasp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子、谷沢靖洋、中村保一, 他
- Organizer
  第60回植物生理学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構の解析2019
- Author(s)
  長束千尋, Salvatore Cosentino, 按田瑞恵, 角悟, 後藤恭宏, 中村佳司, 林哲也, 岩崎渉, 上田賢志, 髙野英晃
- Organizer
  2019年度(第34回)日本放線菌学会大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] DFAST : Prokaryotic Genome Annotation Pipeline for Faster Data Submission to Public Sequence Database2019
- Author(s)
  Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, and Yasukazu Nakamura
- Organizer
  ASM Microbe 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Update of MarpolBase to accommodate ver. 5.1 gene annotation.2019
- Author(s)
  Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Frédéric Berger
- Organizer
  Marchantia Workshop 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Intracellular evolution through loss of photosynthesis and adaptation to a heterotrophic lifestyle revealed by the genome analysis of a non-photosynthetic diatom2019
- Author(s)
  Ryoma Kamikawa, Takuro Nakayama, Daniel Moog, Takayuki Fujiwara, Ryo Onuma, Shin-ya Miyagishima, Keitaro Kume, Ugo Cenci, Bernard Henrissat, Kaori Oyama, Misako Kato, Hideaki Miyashita, Goro Tanifuji, Yasuhiro Tanizawa, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura
- Organizer
  14th International Colloquium on Endocytobiology and Symbiosis, Lille, France
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Mutation spectrum in the genome of offspring derived from irradiated mouse spermatogonia and mature oocytes2019
- Author(s)
  Yasunari Satoh, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Organizer
  日本放射線影響学会第62回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケ・高密度な実験情報の集約によるモデル植物化の加速2019
- Author(s)
  中村保一
- Organizer
  「データ駆動型植物科学最前線」第37回日本植物細胞分子生物学会大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2019
- Author(s)
  谷沢靖洋、藤澤貴智、有田正規、中村保一
- Organizer
  第13回ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Chromosome-scale assemblies are coming back.2019
- Author(s)
  Yasukazu Nakamura
- Organizer
  The Asian Bioinformatics Consortium (ABC) Symposium
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケMarchantia polymorphaと珪藻Nitzschia sp. NIES4239のゲノム解析2019
- Author(s)
  望月孝子, 谷澤靖洋, 山岡尚平, 西浜竜一, 金澤建彦, 上田貴志, 大和勝幸, 河内孝之, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第60回日本植物生理学会年会(名古屋)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 放線菌Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構2019
- Author(s)
  長束千尋, Salvatore Cosentino, 按田瑞恵, 角悟, 後藤恭宏, 中村佳司, 林哲也, 岩崎渉, 上田賢志, 髙野英晃
- Organizer
  第18回微生物研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで2019
- Author(s)
  坂本美佳, 望月孝子, 谷澤靖洋, 矢倉勝, 谷藤吾朗, 神川龍馬, 中村保一
- Organizer
  第2回植物インフォマティクス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Database for the Chromosome-Level Assembly for a Liverwort Marchantia polymorpha2019
- Author(s)
  Nakamura, Y., Tanizawa, Y., Mochizuki, T., et al.
- Organizer
  Plant and Animal Genomics 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] We are ready to 10 k microbe genomes.2019
- Author(s)
  Yasukazu Nakamura
- Organizer
  A high-level CODATA data policy meeting, Beijing
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes2019
- Author(s)
  Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Harry M. Cullings, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
- Organizer
  The 16th International Congress of Radiation Research 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 気管支敗血症菌を用いたボルデテラ属細菌の発咳機構の解析2018
- Author(s)
  篠田典子、中村佳司、神谷重樹、新澤直明、堀口安彦
- Organizer
  人獣共通感染症研究拠点シンポジウム
- Data Source
  KAKENHI-PROJECT-16K19124
[Presentation] 精原細胞期と成熟卵母細胞期のマウス生殖細胞への放射線照射は子どものゲノムに小さなサイズの欠失とマルチサイト変異を誘発する2018
- Author(s)
  佐藤康成、Kuo Tony、瀬々潤、西村まゆみ、島田義也、中村典、内村有邦
- Organizer
  日本放射線影響学会第61回大会
- Invited
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第12回日本ゲノム微生物学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ゼニゴケ・珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで2018
- Author(s)
  望月孝子、谷沢靖洋、中村保一
- Organizer
  第1回植物インフォマティックス研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] 網羅的遺伝子構造予測自動アノテーションパイプラインの開発2018
- Author(s)
  篠田恭寛, 梶谷嶺, 小林史弥, 高橋和希, 中村優太, 湯淺英知, 伊藤武彦
- Organizer
  第41回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Both common and rare genetic variants of ABCG2 are risks for gout2018
- Author(s)
  Higashino T, Takada T, Nakaoka H, Toyoda Y, Stiburkova B, Miyata H, Ikebuchi Y, Nakashima H, Shimizu S, Kawaguchi M, Sakiyama M, Nakayama A, Akashi A, Tanahashi Y, Kawamura Y, Nakamura T, Wakai K, Okada R, Yamamoto K, Hosomichi K, Hosoya T, Ichida K, Ooyama H, Suzuki H, Inoue I, Merriman TR, Shinomiya N, Matsuo H.
- Organizer
  European Human Genetics Conference 2019
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] O157堺株Stx2ファージの形態形成に必須な遺伝子の同定2018
- Author(s)
  金宗鉉、中村佳司、後藤恭宏、小椋義俊、林哲也
- Organizer
  第22回腸管出血性大腸菌大腸菌感染症研究会
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] Genome diversity of EHEC O145:H28 and genome-wide search of high Stx2 producibility-associated genes2018
- Author(s)
  Keiji Nakamura, Kazunori Murase, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi
- Organizer
  10th International symposium on Shiga Toxin producing Escherichia coli Infections (VTEC2018)
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K07116
[Presentation] 微生物ゲノムアノテーションツールDFASTの開発2018
- Author(s)
  谷沢靖洋、藤澤貴智、中村保一
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Marpolbase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T, Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Construction of the Marchantia polymorpha Genome Database2018
- Author(s)
  Takako Mochizuki, Yasuhiro Tanizawa, Hideki Nagasaki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  Plant and Animal Genome XXVI
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Development of Marchantia Gene Nomenclature Database2018
- Author(s)
  Yasuhiro Tanizawa, Takako Mochizuki, Shohei Yamaoka, Ryuichi Nishihama, Takehiko Kanazawa, Takashi Ueda, Katsuyuki T. Yamato, Takayuki Kohchi, and Yasukazu Nakamura
- Organizer
  EMBO Workshop
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Screening for the Bordetella dermonecrotic toxin receptor2018
- Author(s)
  照屋志帆乃、福井理、中村佳司、新澤直明、堀口安彦
- Organizer
  第91回日本細菌学会総会
- Data Source
  KAKENHI-PROJECT-16K19124
[Presentation] THE COMPLETE GENOME OF A NON-PHOTOSYNTHETIC DIATOM AND ITS PLASTIDAL SULFOLIPID BIOSYNTHESIS2018
- Author(s)
  Kamikawa R, Oyama K, Tanizawa Y, Mochizuki T, Nakayama T, Tanifuji, G, Nakamura Y, Kato M, Miyashita H
- Organizer
  ISOP/PSA
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キット間におけるシーケンスバイアスの比較2018
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 林将大, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  第91回日本細菌学会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : ゼニゴケゲノムデータベースの構築2018
- Author(s)
  望月孝子、谷澤靖洋、長崎英樹、山岡尚平、西浜竜一、金澤建彦、上田貴志、大和勝幸、河内孝之、中村保一
- Organizer
  第59回日本植物生理学会年会(札幌)
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Towards Better Genome Annotation.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Symposium on "Genome Evolution at Mishima"(GEM)
- Place of Presentation
  三島
- Year and Date
  2017-03-27
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Biology of a picoeukaryotic phytoplankton, Parmales(Bolidophyceae), a sister group of diatoms2017
- Author(s)
  桑田晃, 一宮睦雄, 吉川伸哉, 山田和正, 河地正伸, Mary-Hélène Noël, 斉藤憲治, 中村洋路, 沢田健, Adriana Lopes dos Santos, Daniel Vaulot
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Morphological and transcriptome analysis in cell wall formation of Triparma laevis2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  The IVth International Conference "Molecular Life of Diatoms"
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST : Toward faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, M Arita, Y Nakamura
- Organizer
  NIG International Symposium 2017 Commemorationg the 30th Anniversary of DDBJ. Life, Environment, and Evolution Revealed by Genomes
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] DFAST : a flexible prokaryotic genome annotation pipeline for faster genome publication2017
- Author(s)
  Y Tanizawa, T Fujisawa, Y Nakamura
- Organizer
  The 28th International Conference on Genome Informatics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] MarpolBase : Genome Database for Marchantia polymorpha2017
- Author(s)
  Y Tanizawa, T Mochizuki, Y Nakamura
- Organizer
  The 65th NIBB Conference : Renaissance of Marchantia polymorpha
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] パルマ藻Triparma Iaevisの細胞壁形成機構の解析2017
- Author(s)
  吉川伸哉, 佐藤晋也, 山崎誠司, 一柳紀凛, 山田和正, 一宮睦雄, 斉藤憲治, 中村洋路, 佐藤直樹, 桑田晃
- Organizer
  日本植物学会第81回大会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Genome-wide association study of clinically defined gout and subtypes identifies multiple susceptibility loci including transporter genes.2017
- Author(s)
  Hirotaka Matsuo, Nakayama Akiyoshi, Hirofumi Nakaoka, Ken Yamamoto, Masayuki Sakiyama, Amara Shaukat, Yu Toyoda, Yukinori Okada, Yoichiro Kamatani, Masahiro Nakatochi, Takahiro Nakamura, Tappei Takada, Katsuhisa Inoue, Hiroshi Nakashima, Seiko Shimizu, Kawaguchi Makoto, Asahi Hishida, Kenji Wakai, Blanka Stiburkova, Lisa K. Stamp, Nicola Dalbeth, Tatsuo Hosoya, Ituro Inoue, Atsushi Takahashi, Michiaki Kubo, Hiroshi Ooyama, Toru Shimizu, Kimiyoshi Ichida, Tony R. Merriman, Nariyoshi Shinomiya
- Organizer
  67th Annual Meeting of the American Society of Human Genetics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ライブラリ調製キットNextera XTによるシーケンスバイアスと細菌のGC含量の関係2017
- Author(s)
  佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也
- Organizer
  NGS現場の会第5回研究会
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] Bacterial genome annotation web-platform DFAST-Toward faster genome publication.2017
- Author(s)
  Yasuhiro Tanizawa and Yasukazu Nakamura
- Organizer
  Advanced Genome Science International Symposium “The Start of New Genomics”
- Place of Presentation
  東京
- Year and Date
  2017-01-10
- Invited / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H06279
[Presentation] ボルデテラ壊死毒（DNT）の細胞受容体同定2017
- Author(s)
  照屋志帆乃、福井理、中村佳司、新澤直明、堀口安彦
- Organizer
  第70回日本細菌学会関西支部総会
- Data Source
  KAKENHI-PROJECT-16K19124
[Presentation] in vivo RNA-seq reveals novel antigens against Bordetella pertussis infection2017
- Author(s)
  鈴木孝一朗、新澤直明、元岡大祐、中村昇太、石垣佳祐、生田和良、山西弘一、堀口安彦
- Organizer
  第90回日本細菌学会総会
- Place of Presentation
  仙台市、宮城県
- Year and Date
  2017-03-19
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 百日咳の病態発生機序解明に向けた感染動物モデルの確立2016
- Author(s)
  中村佳司、神谷重樹、安倍裕順、新澤直明、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪府大阪市　大阪国際交流センター
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] 百日咳菌が産生するアデニレートサイクラーゼ毒素は気道の組織障害を引き起こす2016
- Author(s)
  福井理、戸嶋ひろ野、新澤直明、中村佳司、安倍裕順、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪（大阪国際交流センター）
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] In vivo RNA-seq revealed infection-linked expression pattern of Bordetella pertussis within host2016
- Author(s)
  新澤直明、鈴木孝一朗、元岡大祐、中村昇太、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪（大阪国際交流センター）
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] アデニレートサイクラーゼ毒素（ACT）の作用がボルデテラ属細菌の感染に及ぼす影響2016
- Author(s)
  福井理、戸嶋ひろ野、新澤直明、中村佳司、安倍裕順、堀口安彦
- Organizer
  第63回トキシンシンポジウム
- Place of Presentation
  天童市、山形県
- Year and Date
  2016-07-14
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 百日咳の病態発生機序解明に向けた感染動物モデルの確立2016
- Author(s)
  中村佳司、神谷重樹、安倍裕順、新澤直明、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪（大阪国際交流センター）
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 百日咳菌が産生するアデニレートサイクラーゼ毒素は気道の組織障害を引き起こす2016
- Author(s)
  福井理、戸嶋ひろ野、新澤直明、中村佳司、安倍裕順、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪府大阪市　大阪国際交流センター
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] Analysis of roles of pertussis toxin in infection2016
- Author(s)
  新居祐規、中村佳司、鈴木孝一朗、安倍裕順、新澤直明、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪府大阪市　大阪国際交流センター
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] Analysis of roles of pertussis toxin in infection2016
- Author(s)
  新居祐規、中村佳司、鈴木孝一朗、安倍裕順、新澤直明、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪（大阪国際交流センター）
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] Seeking novel antigens against Bordetella pertussis infection2016
- Author(s)
  鈴木孝一朗、新澤直明、中村佳司、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪府大阪市　大阪国際交流センター
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] Seeking novel antigens against Bordetella pertussis infection2016
- Author(s)
  鈴木孝一朗、新澤直明、中村佳司、堀口安彦
- Organizer
  第89回日本細菌学会総会
- Place of Presentation
  大阪（大阪国際交流センター）
- Year and Date
  2016-03-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 気管支敗血症菌のバイオフィルム関連付着因子brtAはBvg抑制遺伝子でありながら宿主感染時に発現している2015
- Author(s)
  西川明芳、新澤直明、中村佳司、石垣佳祐、安倍裕順、堀口安彦
- Organizer
  第68回日本細菌学会関西支部総会
- Place of Presentation
  京都府京都市　京都薬科大学
- Year and Date
  2015-11-28
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] 気管支敗血症菌のバイオフィルム関連付着因子brtAはBvg抑制遺伝子でありながら宿主感染時に発現している2015
- Author(s)
  西川明芳、新澤直明、中村佳司、石垣佳祐、安倍裕順、堀口安彦
- Organizer
  第9回細菌学若手コロッセウム
- Place of Presentation
  鹿児島県鹿児島市　KKRホテル敬天閣
- Year and Date
  2015-11-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] 百日咳の病態発生機序解明に向けた感染動物モデルの確立2015
- Author(s)
  中村佳司、神谷重樹、安倍裕順、新澤直明、堀口安彦
- Organizer
  第9回細菌学若手コロッセウム
- Place of Presentation
  鹿児島県鹿児島市　KKRホテル敬天閣
- Year and Date
  2015-11-23
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] Adenylate cyclase toxin from B. pertussis but not B. bronchiseptica causes tracheal tissue damage during infection2015
- Author(s)
  A. Fukui-Miyazaki, H. Toshiba, N. Shinzawa, K. Nakamura, H. Abe, Y. Horiguchi
- Organizer
  第68回日本細菌学会関西支部総会
- Place of Presentation
  京都（京都薬科大学）
- Year and Date
  2015-11-08
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 気管支敗血症菌のバイオフィルム関連付着因子brtAはBvg抑制遺伝子でありながら宿主感染時に発現している2015
- Author(s)
  西川明芳、新澤直明、中村佳司、石垣佳祐、安倍裕順、堀口安彦
- Organizer
  第9回細菌学若手コロッセウム
- Place of Presentation
  鹿児島県（KKRホテル敬天閣）
- Year and Date
  2015-11-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] 気管支敗血症菌のバイオフィルム関連付着因子brtAはBvg抑制遺伝子でありながら宿主感染時に発現している2015
- Author(s)
  西川明芳、新澤直明、中村佳司、石垣佳祐、安倍裕順、堀口安彦
- Organizer
  第68回日本細菌学会関西支部総会
- Place of Presentation
  京都（京都薬科大学）
- Year and Date
  2015-11-08
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] Adenylate cyclase toxin from B. pertussis but not B. bronchiseptica causes tracheal tissue damage during infection2015
- Author(s)
  A. Fukui-Miyazaki, H. Toshima, N. Shinzawa, K. Nakamura, H. Abe, Y. Horiguchi
- Organizer
  第68回日本細菌学会関西支部総会
- Place of Presentation
  京都府京都市　京都薬科大学
- Year and Date
  2015-11-28
- Data Source
  KAKENHI-PROJECT-26860288
[Presentation] 百日咳の病態発生機序解明に向けた感染動物モデルの確立2015
- Author(s)
  中村佳司
- Organizer
  第9回細菌学若手コロッセウム
- Place of Presentation
  鹿児島県（KKRホテル敬天閣）
- Year and Date
  2015-11-23
- Data Source
  KAKENHI-PROJECT-26293096
[Presentation] ボルデテラ壊死毒（DNT）の細胞受容体探索
- Author(s)
  照屋志帆乃中村佳司福井理安倍裕順新澤直明堀口安彦
- Organizer
  第88回日本細菌学会総会
- Place of Presentation
  岐阜県（長良川国際会議場）
- Year and Date
  2015-03-26 – 2015-03-28
- Data Source
  KAKENHI-PROJECT-26293096

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Nakamura Keiji 中村 佳司

NAKAMURA Keiji 中村 佳司

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Co-Researchers

腸管出血性大腸菌における自発的プロファージ誘導の抑制機構の解明Principal Investigator

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Analysis of the serotype conversion in E. coli by large-scale genomic dataPrincipal Investigator

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Analysis of inter-phage interaction and its impacts on the evolution of enterohemorrhagic E. coliPrincipal Investigator

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Functional analysis of a bacterial contributor to coughing fits in whooping coughPrincipal Investigator

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Preparation of Bordetella pertussis that infects experimental animals by introduction of large DNA fragments from B. bronchiseptica

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Platform for Advanced Genome Science

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Analysis of a novel virulence factor produced by Bordetella bronchisepticaPrincipal Investigator

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Analyses for the mechanism by which Bordetella pertussis causes paroxysmal coughing

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[Book] Methods in Molecular Biology, Gene Prediction2019

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[Book] Gene Prediction Methods and Protocols2019

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[Book] 次世代シークエンサーDRY解析教本 改訂第2版2019

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[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊 もっとよくわかる! シリーズ)2019

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[Journal Article] Global population structure, genomic diversity and carbohydrate fermentation characteristics of clonal complex 119 (CC119), an understudied Shiga toxin-producing E. coli (STEC) lineage including O165:H25 and O172:H252023

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DOI

Nakamura Keiji 中村佳司

NAKAMURA Keiji 中村佳司

[Book] 次世代シークエンサーDRY解析教本改訂第2版2019

[Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊もっとよくわかる! シリーズ)2019