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Kumagai Yutaro  熊谷 雄太郎

… Alternative Names

KUMAGAI Yutaro  熊谷 雄太郎

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Researcher Number 00528408
Other IDs
  • ORCIDhttps://orcid.org/0000-0002-5039-3979
Affiliation (Current) 2025: 国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員
2025: 大阪大学, 免疫学フロンティア研究センター, 特任助教(常勤)
Affiliation (based on the past Project Information) *help 2018 – 2024: 国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員
2015 – 2017: 大阪大学, 免疫学フロンティア研究センター, 特任助教(常勤)
2013 – 2014: 大阪大学, 免疫学フロンティア研究センター, 特任助教
2012: 大阪大学, 微生物病研究所, 助教
2009 – 2010: Osaka University, 微生物病研究所, 特任助教
Review Section/Research Field
Principal Investigator
Immunology / Transformative Research Areas, Section (II) / Complex Systems Disease Theory / Genome biology
Except Principal Investigator
Basic Section 55050:Anesthesiology-related / Anesthesiology / System genome science
Keywords
Principal Investigator
免疫システム / 免疫学 / 確率モデリング / 数理モデル / マルチオミクス / データ同化 / 樹状細胞分化 / 免疫応答 / 数理モデリング / 細胞間接触 … More / I型インターフェロン / 抗ウイルス免疫応答 / RNA結合タンパク質 / Ly6Chi monocy型te / Ly6Chi monocyte / Streptococcus pneumoniae / ウイルス感染 / Listeria monocytogenes / I型IFN / I型インターフェロン産生細胞 / 自然免疫 … More
Except Principal Investigator
痛み / スーパーコンピュータ / 空間的オミックス解析 / エピゲノム / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / シングルセル解析 / オミックス解析 / メタゲノム / ゲノム / 動物 / 評価 / 脳波 / 評価法 / 動物モデル / イメージング / 免疫 / 遷延性疼痛 / 高解像MRI / 疼痛モデル / 高解像MRI / 術後遷延痛 / マクロファージ / Differentiation / Immune system / Regulatory network / Chronic disease / Inflammation / Bioinformatics / Immunology / Systems biology Less
  • Research Projects

    (9 results)
  • Research Products

    (25 results)
  • Co-Researchers

    (38 People)
  •  Theory of stochastic description of biological dynamics and its applicationPrincipal Investigator

    • Principal Investigator
      熊谷 雄太郎
    • Project Period (FY)
      2023 – 2024
    • Research Category
      Grant-in-Aid for Transformative Research Areas (A)
    • Review Section
      Transformative Research Areas, Section (II)
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  Platform for Advanced Genome Science

    • Principal Investigator
      黒川 顕
    • Project Period (FY)
      2022 – 2027
    • Research Category
      Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
    • Research Institution
      National Institute of Genetics
  •  Establishment of a reverse translational approach to assess pain by EEG in animals.

    • Principal Investigator
      Nakae Aya
    • Project Period (FY)
      2019 – 2021
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Review Section
      Basic Section 55050:Anesthesiology-related
    • Research Institution
      University of Fukui
      Osaka University
  •  Modeling immune system by a mathematical method integrating omics dataPrincipal Investigator

    • Principal Investigator
      Kumagai Yutaro
    • Project Period (FY)
      2018 – 2020
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      Complex Systems Disease Theory
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
  •  Analysis of a novel cell-cell contact-dependent signaling pathway in antiviral immune responsePrincipal Investigator

    • Principal Investigator
      Kumagai Yutaro
    • Project Period (FY)
      2017 – 2018
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Immunology
    • Research Institution
      National Institute of Advanced Industrial Science and Technology
      Osaka University
  •  Elucidation of the mechanisms of cellar and molecular transduction to the brain for trigger of pain chronification

    • Principal Investigator
      NAKAE Aya
    • Project Period (FY)
      2015 – 2018
    • Research Category
      Grant-in-Aid for Scientific Research (B)
    • Research Field
      Anesthesiology
    • Research Institution
      Osaka University
  •  Identification of the mechanisms driving the onset of chronic inflammation by cigarette smoke

    • Principal Investigator
      Diez Diego
    • Project Period (FY)
      2013 – 2016
    • Research Category
      Grant-in-Aid for Scientific Research (C)
    • Research Field
      System genome science
    • Research Institution
      Osaka University
  •  Novel method to identify targets for RNA binding protein by using RNA modification enzyme.Principal Investigator

    • Principal Investigator
      KUMAGAI Yutaro
    • Project Period (FY)
      2012 – 2014
    • Research Category
      Grant-in-Aid for Challenging Exploratory Research
    • Research Field
      Genome biology
    • Research Institution
      Osaka University
  •  Monitoring and identification of type I IFN producing cells in vivo.Principal Investigator

    • Principal Investigator
      KUMAGAI Yutaro
    • Project Period (FY)
      2009 – 2010
    • Research Category
      Grant-in-Aid for Young Scientists (B)
    • Research Field
      Immunology
    • Research Institution
      Osaka University

All 2024 2023 2022 2021 2020 2018 2017 2016 2011 2010 2009

All Journal Article Presentation

  • [Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024

    • Author(s)
      Nishimura, L., Tanino, A., Ajimoto, M., Katsumura, T., Ogawa, M., Koganebuchi, K., Waku, D., Kumagai, M., Sugimoto, R., Nakaoka, H., Oota, H., & Inoue, I.
    • Journal Title

      PloS one

      Volume: 19(1) Issue: 1 Pages: e0295924-e0295924

    • DOI

      10.1371/journal.pone.0295924

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-21K13141, KAKENHI-PROJECT-23KF0206, KAKENHI-PROJECT-21K00996, KAKENHI-PROJECT-22KF0092, KAKENHI-PROJECT-22KJ1416, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00009, KAKENHI-PROJECT-21H00605
  • [Journal Article] An engineered ligand-responsive Csy4 endoribonuclease controls transgene expression from Sendai virus vectors2024

    • Author(s)
      Kishimoto Takumi、Nishimura Ken、Morishita Kana、Fukuda Aya、Miyamae Yusaku、Kumagai Yutaro、Sumaru Kimio、Nakanishi Mahito、Hisatake Koji、Sano Masayuki
    • Journal Title

      Journal of Biological Engineering

      Volume: 18 Issue: 1

    • DOI

      10.1186/s13036-024-00404-9

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K06501, KAKENHI-PUBLICLY-23H04486
  • [Journal Article] A Multiomics Atlas of Brown Adipose Tissue Development Over Time2023

    • Author(s)
      Kumagai Yutaro、Saito Yutaka、Kida Yasuyuki S
    • Journal Title

      Endocrinology

      Volume: 164 Issue: 6

    • DOI

      10.1210/endocr/bqad064

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PUBLICLY-23H04486, KAKENHI-PROJECT-23K24946
  • [Journal Article] Multi-omics computational analysis unveils the involvement of AP-1 and CTCF in hysteresis of chromatin states during macrophage polarization2023

    • Author(s)
      Zhang Yubo、Yang Wenbo、Kumagai Yutaro、Loza Martin、Zhang Weihang、Park Sung-Joon、Nakai Kenta
    • Journal Title

      Frontiers in Immunology

      Volume: 14

    • DOI

      10.3389/fimmu.2023.1304778

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22K06189, KAKENHI-PUBLICLY-23H04486
  • [Journal Article] Metabolic advantages of regulatory T cells dictated by cancer cells2023

    • Author(s)
      Kondo Masaki、Kumagai Shogo、Nishikawa Hiroyoshi
    • Journal Title

      International Immunology

      Volume: 36 Issue: 2 Pages: 75-86

    • DOI

      10.1093/intimm/dxad035

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-22KJ3156, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00455
  • [Journal Article] BATF epigenetically and transcriptionally controls the activation program of regulatory T cells in human tumors2022

    • Author(s)
      Itahashi Kota、Irie Takuma、Yuda Junichiro、Kumagai Shogo、Tanegashima Tokiyoshi、Lin Yi-Tzu、Watanabe Sho、Goto Yasushi、Suzuki Jun、Aokage Keiju、Tsuboi Masahiro、Minami Yosuke、Ishii Genichiro、Ohe Yuichiro、Ise Wataru、Kurosaki Tomohiro、Suzuki Yutaka、Koyama Shohei、Nishikawa Hiroyoshi
    • Journal Title

      Science Immunology

      Volume: 7 Issue: 76 Pages: 1-20

    • DOI

      10.1126/sciimmunol.abk0957

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-21K07112, KAKENHI-PROJECT-20K17391, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00450, KAKENHI-PROJECT-22H00455, KAKENHI-PROJECT-20H03503, KAKENHI-PROJECT-21K15542
  • [Journal Article] Adipose-derived mesenchymal stem cells differentiate into heterogeneous cancer-associated fibroblasts in a stroma-rich xenograft model2021

    • Author(s)
      Miyazaki Yoshihiro、Oda Tatsuya、Inagaki Yuki、Kushige Hiroko、Saito Yutaka、Mori Nobuhito、Takayama Yuzo、Kumagai Yutaro、Mitsuyama Toutai、Kida Yasuyuki S.
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 4690-4690

    • DOI

      10.1038/s41598-021-84058-3

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-19K20409, KAKENHI-PROJECT-18KT0070
  • [Journal Article] Zinc Finger Protein St18 Protects against Septic Death by Inhibiting VEGF-A from Macrophages2020

    • Author(s)
      Maruyama Kenta、Kidoya Hiroyasu、Takemura Naoki、Sugisawa Erika、Takeuchi Osamu、Kondo Takeshi、Eid Mohammed Mansour Abbas、Tanaka Hiroki、Martino Mika?l M.、Takakura Nobuyuki、Takayama Yasunori、Akira Shizuo、Vandenbon Alexis、Kumagai Yutaro
    • Journal Title

      Cell Reports

      Volume: 32 Issue: 2 Pages: 107906-107906

    • DOI

      10.1016/j.celrep.2020.107906

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18H05278, KAKENHI-PROJECT-18H02970, KAKENHI-PROJECT-19K22712, KAKENHI-PROJECT-18KT0070, KAKENHI-PROJECT-20H00516, KAKENHI-PROJECT-18K19475
  • [Journal Article] Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating2020

    • Author(s)
      Takayama Yuzo、Kushige Hiroko、Akagi Yuka、Suzuki Yutaka、Kumagai Yutaro、Kida Yasuyuki S.
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 9464-9464

    • DOI

      10.1038/s41598-020-66303-3

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-18KT0070
  • [Journal Article] RNA Sensing by Gut Piezo1 Is Essential for Systemic Serotonin Synthesis2020

    • Author(s)
      Sugisawa Erika、Takayama Yasunori、Takemura Naoki、Kondo Takeshi、Hatakeyama Shigetsugu、Kumagai Yutaro、Sunagawa Masataka、Tominaga Makoto、Maruyama Kenta
    • Journal Title

      Cell

      Volume: 182 Issue: 3 Pages: 609-624

    • DOI

      10.1016/j.cell.2020.06.022

    • Peer Reviewed
    • Data Source
      KAKENHI-PUBLICLY-19H05280, KAKENHI-PROJECT-18H02607, KAKENHI-PROJECT-18H02970, KAKENHI-PROJECT-19K22712, KAKENHI-PROJECT-18KT0070
  • [Journal Article] Eosinophil depletion suppresses radiation-induced small intestinal fibrosis.2018

    • Author(s)
      Takemura N, Kurashima Y, Mori Y, Okada K, Ogino T, Osawa H, Matsuno H, Aayam L, Kaneto S, Park EJ, Sato S, Matsunaga K, Tamura Y, Ouchi Y, Kumagai Y, Kobayashi D, Suzuki Y, Yoshioka Y, Nishimura J, Mori M, Ishii KJ, Rothenberg ME, Kiyono H, Akira S, Uematsu S.
    • Journal Title

      Sci Transl Med.

      Volume: -- Issue: 429 Pages: 264-273

    • DOI

      10.1126/scitranslmed.aan0333

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-16K08836, KAKENHI-PROJECT-17K19543, KAKENHI-PROJECT-16H01849, KAKENHI-PROJECT-17H04257, KAKENHI-PROJECT-16K08581, KAKENHI-PROJECT-17K15725, KAKENHI-PROJECT-17K19550, KAKENHI-PROJECT-16K19148, KAKENHI-PROJECT-16H06243
  • [Journal Article] Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation2018

    • Author(s)
      Vandenbon Alexis、Kumagai Yutaro、Lin Mengjie、Suzuki Yutaka、Nakai Kenta
    • Journal Title

      Genome Biology

      Volume: 19 Issue: 1 Pages: 0-0

    • DOI

      10.1186/s13059-018-1524-z

    • NAID

      120006559396

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K15725
  • [Journal Article] Estimation of diffusion constants from single molecular measurement without explicit tracking.2018

    • Author(s)
      Teraguchi Shunsuke、Kumagai Yutaro
    • Journal Title

      BMC Systems Biology

      Volume: 12 Issue: S1 Pages: 25-39

    • DOI

      10.1186/s12918-018-0526-5

    • Peer Reviewed / Open Access
    • Data Source
      KAKENHI-PROJECT-17K15725
  • [Journal Article] The ATP Transporter VNUT Mediates Induction of Dectin-1-Triggered Candida Nociception.2018

    • Author(s)
      Maruyama K, Takayama Y, Sugisawa E, Yamanoi Y, Yokawa T, Kondo T, Ishibashi KI, Sahoo BR, Takemura N, Mori Y, Kanemaru H, Kumagai Y, Martino MM, Yoshioka Y, Nishijo H, Tanaka H, Sasaki A, Ohno N, Iwakura Y, Moriyama Y, Nomura M, Akira S, Tominaga M.
    • Journal Title

      iScience

      Volume: 6 Pages: 306-318

    • DOI

      10.1016/j.isci.2018.08.007

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K09885, KAKENHI-PROJECT-16K19148, KAKENHI-PROJECT-17K15793, KAKENHI-PLANNED-15H05928, KAKENHI-ORGANIZER-17H06391, KAKENHI-PUBLICLY-18H05045, KAKENHI-PROJECT-16H01849, KAKENHI-PROJECT-18H01841, KAKENHI-PROJECT-18H02671, KAKENHI-PROJECT-18H02970, KAKENHI-PROJECT-17K15725
  • [Journal Article] Nociceptors Boost the Resolution of Fungal Osteoinflammation via the TRP Channel-CGRP-Jdp2 Axis2017

    • Author(s)
      Maruyama Kenta、Takayama Yasunori、Kondo Takeshi、Ishibashi Ken-ichi、Sahoo Bikash Ranjan、Kanemaru Hisashi、Kumagai Yutaro、Martino Mika?l M.、Tanaka Hiroki、Ohno Naohito、Iwakura Yoichiro、Takemura Naoki、Tominaga Makoto、Akira Shizuo
    • Journal Title

      Cell Reports

      Volume: 19 Issue: 13 Pages: 2730-2742

    • DOI

      10.1016/j.celrep.2017.06.002

    • Peer Reviewed / Open Access / Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-17K15725, KAKENHI-PROJECT-15H05787, KAKENHI-PROJECT-15H02501, KAKENHI-PROJECT-15H05686, KAKENHI-PROJECT-16K15665, KAKENHI-PROJECT-16K19148
  • [Journal Article] Intracellular Protein-Labeling Probes for Multicolor Single-Molecule Imaging of Immune Receptor?Adaptor Molecular Dynamics2017

    • Author(s)
      Sato Ryota、Kozuka Jun、Ueda Masahiro、Mishima Reiko、Kumagai Yutaro、Yoshimura Akimasa、Minoshima Masafumi、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Journal of the American Chemical Society

      Volume: 139 Issue: 48 Pages: 17397-17404

    • DOI

      10.1021/jacs.7b08262

    • Peer Reviewed
    • Data Source
      KAKENHI-PROJECT-16K00413, KAKENHI-PROJECT-16K01933, KAKENHI-PROJECT-17K15725, KAKENHI-PROJECT-15H03120, KAKENHI-PROJECT-16K13102, KAKENHI-PROJECT-25220207
  • [Presentation] Direct reprogramming of fibroblasts into functional dendritic cells by defined factors.2024

    • Author(s)
      Yutaro Kumagai
    • Organizer
      第52回日本免疫学会学術集会
    • Data Source
      KAKENHI-PUBLICLY-23H04486
  • [Presentation] オウトウショウジョウバエの産卵場所シフトに伴う雌雄形態の共進化とその遺伝基盤2023

    • Author(s)
      熊谷颯之、山本廉太、酒井杏花、佐藤愛莉、Pertiwi Rahayu、立﨑雅彪、田中健太郎、上村佳孝、高橋文
    • Organizer
      日本遺伝学会第95回大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] 免疫系の情報理論的モデル2023

    • Author(s)
      熊谷雄太郎
    • Organizer
      2023年度日本数理生物学会年会
    • Data Source
      KAKENHI-PUBLICLY-23H04486
  • [Presentation] オウトウショウジョウバエにおける雄生殖器surstylusの機能および遺伝的基盤の解明2022

    • Author(s)
      熊谷颯之、酒井杏花、藤近敬子、田中健太郎、上村佳孝、髙橋文
    • Organizer
      日本進化学会第24回沼津大会
    • Data Source
      KAKENHI-PROJECT-22H04925
  • [Presentation] Confirmation of pain-related behavior changes of newly developed persistent post-operative pain model by using MyD88-/- and TRIF-/- mice2016

    • Author(s)
      Aya Nakae, Kunihiro Nakai, Yutaro Kumagai, Ko Hosokawa, Yoshichika Yoshioka
    • Organizer
      北米神経科学会
    • Place of Presentation
      シカゴ、米国
    • Int'l Joint Research
    • Data Source
      KAKENHI-PROJECT-15H04968
  • [Presentation] Identification and Characterization of in vivo IFN-b Producing Cells upon Bacterial Infection.2011

    • Author(s)
      Yutaro Kumagai, Shizuo Akira
    • Organizer
      Towards Comprehensive Understanding of Immune Dynamism 2011
    • Place of Presentation
      千里阪急ホテル(大阪)
    • Year and Date
      2011-03-01
    • Data Source
      KAKENHI-PROJECT-21790470
  • [Presentation] Identification of in vivo IFN-b producing cells in response to bacterial infection.2010

    • Author(s)
      Yutaro Kumagai, Shizuo Akira
    • Organizer
      14th International Congress of Immunology
    • Place of Presentation
      神戸国際展示場(神戸)
    • Year and Date
      2010-08-25
    • Data Source
      KAKENHI-PROJECT-21790470
  • [Presentation] Identification of in vivo IFN-b producing cells in response to bacterial infection.2010

    • Author(s)
      Yutaro Kumagai, Shizuo Akira
    • Organizer
      14th Internatinal Congress of Immunology
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2010-08-25
    • Data Source
      KAKENHI-PROJECT-21790470
  • [Presentation] Identification of in vivo IFN-b producing cells in response to bacterial infection.2009

    • Author(s)
      Yutaro Kumagai, Osamu Takeuchi, Shizuo Akira
    • Organizer
      第39回日本免疫学学術集会
    • Place of Presentation
      大阪国際会議場(大阪)
    • Year and Date
      2009-12-04
    • Data Source
      KAKENHI-PROJECT-21790470
  • 1.  NAKAE Aya (60379170)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 2.  中井 國博 (80362705)
    # of Collaborated Projects: 2 results
    # of Collaborated Products: 1 results
  • 3.  Diez Diego (90597741)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 4.  黒川 顕 (20343246)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 5.  川嶋 実苗 (00396706)
    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
  • 6.  豊田 敦 (10267495)
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    # of Collaborated Products: 0 results
  • 19.  山田 拓司 (10437262)
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    # of Collaborated Products: 0 results
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    # of Collaborated Products: 1 results
  • 21.  浜田 道昭 (00596538)
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    # of Collaborated Products: 0 results
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    # of Collaborated Projects: 1 results
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    # of Collaborated Projects: 1 results
    # of Collaborated Products: 0 results
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    # of Collaborated Projects: 1 results
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  • 25.  林 哲也 (10173014)
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  • 26.  岩崎 渉 (50545019)
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  • 27.  YOSHIOKA yoshichika
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  • 28.  Trost Nina
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  • 29.  SATO Shintaro
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  • 30.  小金渕 佳江
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  • 31.  中井 謙太
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  • 32.  入江 拓磨
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  • 33.  佐野 将之
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  • 34.  竹内 理
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  • 35.  齋藤 裕
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  • 36.  野村 政壽
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  • 37.  小塚 淳
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  • 38.  畠山 鎮次
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