NISHIKAWA Ken 西川建

… Alternative Names

NISHIKAWA Kwn 西川健

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Researcher Number	10093288
Other IDs
External Links
Affiliation (based on the past Project Information) *help	2007 – 2009: Maebashi Institute of Technology, 工学部・生命情報学科, 教授 2001 – 2006: 国立遺伝学研究所, 生命情報・DDBJ研究センター, 教授 2002: National Institute of Genetics, Centre for Information Biology and DNAData Bank of Japan, Professor, DDBJ研究センター, 教授 1997 – 2000: 国立遺伝学研究所, 教授 1997 – 2000: National Institution of Genetics, Center for Information Biology, Professor, 生命情報センター, 教授 1996 – 2000: 国立遺伝学研究所, 生命情報研究センター, 教授
Review Section/Research Field	Principal Investigator Biological Sciences / Applied genomics / Biophysics Except Principal Investigator Biological Sciences / 遺伝 / Biophysics / Evolutionary biology
Keywords	Principal Investigator 真核生物 / 転写因子 / 蛋白質 / ゲノム / 不規則領域 / 情報解析 / 構造ドメイン / モデリング / 分子進化 / 立体構造 … More / タンパク質 / sampling theory / molecular dynamics / modeling / protein / Biophysics / 統計ポテンシャル / 力場 / マルチカノニカル法 / 構造サンプリング / 分子動力学シミュレーション / 最適化問題 / 分子動力学 / 生物物理 / protein three-dimensional structure / assembly PCR method / chimera protein / folding pattern / evolutionary protein engineering / design of artificial protein / molecular evolution / periplasmic binding protein / アセンフーリーPCR法 / タンパク質立体構造 / アセンブリーPCR法 / キメラタンパク質 / 折れたたみパターン / 進化工学 / 人工タンパク質デザイン / ペリプラズム結合タンパク質 / 膜タンパク質 / 天然タンパク質 / 細胞内局在 / 構造未知ドメイン / スプライシング / 天然変性タンパク質 / 比較ゲノム解析 / 古細菌 / 真正細菌 / アノテーション / 転写因子ファミリー / タンパク質分類 / 機能予測 / 偽遺伝子 / 立体構造予測 / データベース構築 / ホモロジー検索 / 局所構造 / ドメイン / 選択的スプライシング / ゲノム情報解析 … More Except Principal Investigator DDBJ / タンパク質 / FAMSBASE / GenBank / 立体構造 / EMBL / DNA / ゲノム / GTOP / FAMS / CAFASP / CASP / ホモロジーモデリング / タンパク質立体構造予測 / INSDB / NCBI / 膜タンパク質 / 立体構造予測 / bioinformatics / protein / Gen Bank / 生命情報学 / データベース / プロテオーム / 計算生物学 / data standardization / human genes / evolutionary information / annotation / genome / biological database / International visit / 国際DNAデータバンク実務者会議 / 非タンパク質遺伝子 / チンパンジー染色体 / ヒト発現遺伝子 / イネゲノム / マイクロアレイデータ / Annotation / UniProt / DNA配列データベース / ヒト遺伝子 / アノテーション / 進化情報 / 多国籍 / 国際情報交換 / prediction / structure / 機能進化解析 / タンパク質データベ-ス / 遺伝子 / バイオインフォマティックス / FAMS、FAMSBASE / アライメント / コンピュータ解析 / 予測 / Molecular simulation / Homology modeling / Critical Assessment of Techniques for Protein Structure Prediction / Protein structure prediction / Genome function prediction / Bioinformatics / Computational biology / 3Dキーノート / 国際予測コンテストCASP4 / らん藻ゲノム / SOSUI / Gtop / 予測生物学 / アブイニシオ / シミュレーション / CASP5 / 分子シミュレーション / 構造予測国際コンテストCASP / ゲノム機能予測 / 生命情報科学 / Human genome / 分子進化 / ヒトゲノム / stabilization factors of proteins / prediction of tertiary structure / X-ray analysis / hydrophobic interaction / hydrogen bond / DSC / lysozyme / stability of proteins / 熱測定 / リゾチーム / 安定性 / Module / Threading / principal variety of protein folds / Structural prediction / Structural comparison / Principle of architecture / Three-dimensional structure / Protein / 膜蛋白質 / 相同蛋白質 / タンパク質デザイン / モデリング / 構造分類 / 蛋白質 / リゾチウム / キメラタンパク / ファージディスプレイ / 立体構造比較 / スレッティング / モジュール / スレッディング / 立体構造基本型 / 構造予測 / 構造比較 / 構築原理 / EBI / database / プロテオミックス / 機能ゲノミックス / 構造ゲノミックス / タンパク質立体構造 / ゲノム情報 / 構造生物学 Less

Computational analysis of human proteins addressing the relationship between intrinsic disorder and alternative splicingPrincipal Investigator
- Principal Investigator
  
  NISHIKAWA Ken
- Project Period (FY)
  2007 – 2009
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied genomics
- Research Institution
  Maebashi Institute of Technology
転写因子の比較ゲノム情報解析:原核型との対比における真核型転写因子の差異と特性Principal Investigator
- Principal Investigator
  
  西川建
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Maebashi Institute of Technology
  National Institute of Genetics
微生物ゲノムを対象とした機能アノテーション全自動化システムの開発Principal Investigator
- Principal Investigator
  
  西川建
- Project Period (FY)
  2005
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics
Developing a new protein homology-modeling method with high precisionPrincipal Investigator
- Principal Investigator
  
  NISHIKAWA Ken
- Project Period (FY)
  2004 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Applied genomics
- Research Institution
  National Institute of Genetics
Collection and Investigation into Basic Evolutionary Information by Orrsite Collaboration
- Principal Investigator
  
  TATENO Yoshio
- Project Period (FY)
  2004 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (A)
- Research Field
  
  Evolutionary biology
- Research Institution
  National Institute of Genetics
Genome wide protein structure and function prediction database using homology modelling
- Principal Investigator
  
  UMEYAMA Hideaki
- Project Period (FY)
  2003 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Kitasato University
ゲノム情報からのタンパク質構造の分類と予測Principal Investigator
- Principal Investigator
  
  西川建
- Project Period (FY)
  2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  National Institute of Genetics
the maintenance and circulation of protein higher-order structural information and the evaluation of prediction information
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Biological Sciences
- Research Institution
  Nagoya University
Experimental study to verify structural changes of proteins taken place in the evolutionary processPrincipal Investigator
- Principal Investigator
  
  NISHIKAWA Ken
- Project Period (FY)
  2000 – 2002
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Biophysics
- Research Institution
  National Institute of Genetics
プロテオーム時代の計算情報生物学
- Principal Investigator
  
  GO Mitiko
- Project Period (FY)
  1999
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Nagoya University
Study on the DNA database and other biological databases
- Principal Investigator
  
  GOJOBORI Takashi
- Project Period (FY)
  1998 – 2000
- Research Category
  
  Grant-in-Aid for Scientific Research (A).
- Research Field
  
  遺伝
- Research Institution
  National Institute of Genetics
Thermodynamic Analysis of Protein Stability
- Principal Investigator
  
  YUTANI Katsuhide
- Project Period (FY)
  1997 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (B).
- Research Field
  
  Biophysics
- Research Institution
  Osaka University
Study on DNA and related bioinformatics databases
- Principal Investigator
  
  GOJOBORI Takashi
- Project Period (FY)
  1995 – 1997
- Research Category
  
  Grant-in-Aid for international Scientific Research
- Research Field
  
  遺伝
- Research Institution
  National Institute of Genetics
Protein structure, comparison, prediction, and design
- Principal Investigator
  
  GO Nobuhiro, 野口俊之
- Project Period (FY)
  1995 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  KYOTO UNIVERSITY
  Nagoya University

All 2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000

All Journal Article Presentation

[Journal Article] Development of an accurate classification system of proteins into stru ctured and unstructured regions that uncovers novel structural domains : Its application to human transcription factors2009
- Author(s)
  S.Fukuchi, K.Homma, Y.Minezaki, T.Gojobori, K.Nishikawa
- Journal Title
  
  BMC Structural Biology 9:26
  
  Pages: 1-13
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] Development of an accurate classification system of proteins into structured and unstructured regions that uncovers novel structural domains: Its application to human transcription factors.2009
- Author(s)
  Fukuchi, S., Homma, K., Minezaki, Y., Gojobori, T., Nishikawa, K.
- Journal Title
  
  BMC Struct. Biology
  
  Pages: 1-13
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] 天然変性タンパク質とは何か?2009
- Author(s)
  西川建
- Journal Title
  
  生物物理 49
  
  Pages: 4-10
- NAID
  110007044740
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] Natively unfolded proteins: an overview.2009
- Author(s)
  Nishikawa, K.
- Journal Title
  
  Biophysics 5
  
  Pages: 53-58
- NAID
  130000119936
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.2009
- Author(s)
  Fukuchi, S., Homma, K., Sakamoto, S., Sugawara, H., Tateno, Y., Gojobori, T., Nishikawa, K.
- Journal Title
  
  Nucl. Acids Res. 37
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] Natively unfolded proteins : An overview2009
- Author(s)
  K.Nishikawa
- Journal Title
  
  Biophysics 5
  
  Pages: 53-58
- NAID
  130000119936
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] 天然変性タンパク質とは何か?2009
- Author(s)
  西川建
- Journal Title
  
  生物物理 Vol.49
  
  Pages: 4-10
- NAID
  110007044740
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] 植物転写因子のゲノム情報解析2008
- Author(s)
  細田和男、西川建
- Journal Title
  
  前橋工科大学研究紀要 11
  
  Pages: 5053-5053
- NAID
  110007124339
- Data Source
  KAKENHI-PROJECT-18017025
[Journal Article] Intrinsically disordered regions of human plasma membrane proteins preferentially occur in the cytoplasmic segment.2007
- Author(s)
  Minezaki, Y., Homma, K., Nishikawa, K.
- Journal Title
  
  J. Mol. Biol. 368
  
  Pages: 902-913
- Data Source
  KAKENHI-PROJECT-19310133
[Journal Article] タンパク質の常識を覆す不定形の鎖2007
- Author(s)
  西川建
- Journal Title
  
  日経サイエンス 37
  
  Pages: 2837-2837
- NAID
  140000294095
- Data Source
  KAKENHI-PROJECT-18017025
[Journal Article] 長大な不規則領域をもつ蛋白質 : ヒト転写因子を例として2006
- Author(s)
  西川建
- Journal Title
  
  蛋白質・核酸・酵素 51(13)
  
  Pages: 1827-1835
- NAID
  40015148971
- Data Source
  KAKENHI-PROJECT-18017025
[Journal Article] Intrinsically disordered loops inserted into the structural domains of human proteins.2006
- Author(s)
  Fuuchi, S., Homma, K., Minezaki, Y., Nishikawa, K.
- Journal Title
  
  J. Mol. Biol. 355
  
  Pages: 845-857
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation.2006
- Author(s)
  Minezaki, Y., Homma, K., Kinjo, A.R., Nishikawa, K.
- Journal Title
  
  J. Mol. Biol. 359
  
  Pages: 1137-1149
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Stabilization of E. coli ribonuclease HI by the 'stability profile of mutant protein'(SPMP)-inspired random and non-random mutagenesis.2006
- Author(s)
  Haruki, M., Saito, Y., Ota, M., Nishikawa, K., Kanaya, S.
- Journal Title
  
  J. Biotech. 124
  
  Pages: 512-522
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Analysis of amino acid residues involved in the catalysis of polyethylene glycol dehydrogenase from sphingomonas terrae using three-dimensional molecular modeling-based kinetic characterization of mutants.2006
- Author(s)
  Ohta, T, Kawabata, T, Nishikawa, K, Tani, A, Kimbara, K, Kawai, F.
- Journal Title
  
  Appl. Environ. Microbiol. 72
  
  Pages: 4388-4396
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Predicting secondary structures, contact numbers and residue-wise contact orders of native protein structure from amino acid sequence using critical random networks c2005
- Author(s)
  Kinjo, A.R., Nishikawa, K.
- Journal Title
  
  Biophysics 1
  
  Pages: 67-74
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Predicting absolute contact numbers of native protein structure from amino acid sequence c2005
- Author(s)
  Kinjo, A.R., Horimoto, K., Nishikawa, K.
- Journal Title
  
  Proteins 58
  
  Pages: 158-165
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Predicting absolute contact numbers of native protein structure from amino acid sequence.2005
- Author(s)
  Kinjo, A.R., Horimoto, K., Nishikawa, K.
- Journal Title
  
  Proteins 58
  
  Pages: 158-165
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies c2005
- Author(s)
  Saka, K., Tadenuma, M., Nakade, S., Tanaka, N., Sugawara, H., Nishikawa, K., Ichiyoshi, N., Kitagawa, M., Mori, H., Ogasawara, N., Nishimura, A.
- Journal Title
  
  DNA Res. 12
  
  Pages: 63-68
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] The map-based sequence of the rice genome.2005
- Author(s)
  (International Rice Genome Sequencing Project : Annotation and Analysis) Iwama, H., Gojobori, T., Itoh, T., Niimura, Y., Fujii, Y., Habara T., Sakai, H., Sato, Y., Wilson, G., Kumar, K., McCouch, S., Juretic, N., Hoen, D., Wright, S., Bruskiewich, R., Bureau T., Miyao, A., Hirochika, H., Nishikawa, T., Kadowaki, K., Sugiura, M.
- Journal Title
  
  Nature 436
  
  Pages: 793-800
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Recoverable one-dimensional encoding of three-dimensional protein structures c2005
- Author(s)
  Kinjo, A.R., Nishikawa, K.
- Journal Title
  
  Bioinformatics 21(10)
  
  Pages: 2167-2170
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Integrative annotation of 21,037 human genes validated by full-length cDNA clones.2004
- Author(s)
  著者多数、その中に西川健
- Journal Title
  
  PLoS Biology 2
  
  Pages: 856-875
- NAID
  120004667172
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Estimation of the number of authentic orphan genes in bacterial genomes.2004
- Author(s)
  Fukukuchi, S., Nishikawa K.
- Journal Title
  
  DNA Res. 11
  
  Pages: 219-231
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] タンパク質から見た極限微生物の環境適応戦略2004
- Author(s)
  吉宗一晃, 福地佐斗志, 森口光瞭, 西川健
- Journal Title
  
  バイオサイエンスとインダストリー
  
  Pages: 6-6
- NAID
  10016213588
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Estimation of the number of authentic orphan genes in bacterial genomes.2004
- Author(s)
  Fukukuchi, S., Nishikawa, K.
- Journal Title
  
  DNA Res. 11
  
  Pages: 219-231
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.2004
- Author(s)
  Kinjo, A.R., Nishikawa, K.
- Journal Title
  
  Bioinformatics 20(16)
  
  Pages: 2504-2508
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Estimation of the number of authentic orphan genes in bacterial genomes.2004
- Author(s)
  Fukuchi, S., Nishikawa, K.
- Journal Title
  
  DNA Research 11
  
  Pages: 219-231
- Data Source
  KAKENHI-PROJECT-16255006
[Journal Article] Alternative splice variants encoding unstable protein domains exist in the human brain.2004
- Author(s)
  Homma, K., Kikuno, R.F., Nagase, T., Ohara, O., Nishikawa, K.
- Journal Title
  
  J.Mol.Biol. 343
  
  Pages: 1207-1220
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Estimation of the number of authentic orphan genes in bacterial genomes2004
- Author(s)
  Fukuchi, S., Nishikawa, K.
- Journal Title
  
  DNA Res. 11
  
  Pages: 219-231
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Unique amino acid composition of proteins in halophilic bacteria2003
- Author(s)
  Fukuchi, S., Yoshimune, K., Wakayama, M., Moriguchi, M., Nishikawa, K.
- Journal Title
  
  J. Mol. Biol. 327(2)
  
  Pages: 347-357
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures.2003
- Author(s)
  Nakashima, H., Fukuchi, S., Nishikawa, K.
- Journal Title
  
  J. Biochem. 133
  
  Pages: 507-513
- NAID
  130003534527
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures2003
- Author(s)
  Nakashima, H., Fukuchi, S., Nishikawa, K.
- Journal Title
  
  J. Biochem. 133(4)
  
  Pages: 507-513
- NAID
  130003534527
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures2003
- Author(s)
  Nakashima, H., Fukuchi, S., Nishikawa.K.
- Journal Title
  
  J.Biochem. 133 (4)
  
  Pages: 507-513
- NAID
  130003534527
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Parallel Evolution of Ligand Specificity Between LacI/GalR Family Repressors and Periplasmic Sugar-Binding Proteins.2003
- Author(s)
  Fukami-Kobayashi K., Tateno, Y., Nishikawa, K.
- Journal Title
  
  Mol. Biol. Evol. 20
  
  Pages: 267-277
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Parallel Evolution of Ligand Specificity Between LacI/GalR Family Repressors and Periplasmic Sugar-Binding Proteins.2003
- Author(s)
  Fukami-Kobayashi K., Tateno, Y., Nishikawa K.
- Journal Title
  
  Mol.Biol.Evol. 20
  
  Pages: 267-277
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] Unique amino acid composition of proteins in halophilic bacteria2003
- Author(s)
  Fukuchi, S., Yoshimune, K., Wakayama, M..Moriguchi, M., Nishikawa.K.
- Journal Title
  
  J.Mol.Biol. 327(2)
  
  Pages: 347-357
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures.2003
- Author(s)
  Nakashima, H., Fukuchi, S., Nishikawa K.
- Journal Title
  
  J.Biochem. 133
  
  Pages: 207-513
- NAID
  130003534527
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-15013251
[Journal Article] ゲノム情報からタンパク質立体構造予測へ : GTOPデータベーズの構築とそれを利用した応用研究2002
- Author(s)
  西川建
- Journal Title
  
  生物物理 42(5)
  
  Pages: 224-229
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] KdsA mutations affect FtsZ-ring formation in Escherichia coli K-122002
- Author(s)
  Fujishima, H., Nishimura, A., Wachi, M., Takagi, H., Hirasawa, T.Teraoka, H., Nishimori, K., Kawabata, T., Nishikawa, K., Nagai, K.
- Journal Title
  
  Microbiology 148(pt1)
  
  Pages: 103-112
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] GTOP : from genomic information to a prediction for protein tertiary structure-building a database and utilize it for an applied research2002
- Author(s)
  Nishikawa, K.
- Journal Title
  
  Seibutsu Butsuri 42(5)
  
  Pages: 224-229
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome2002
- Author(s)
  Homma, K., Fukuchi, S., Kawabata, T., Ota, M., Nishikawa, K.
- Journal Title
  
  Gene. 294 (1-2)
  
  Pages: 25-33
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] GTOP : A database of protein structures predicted from genome sequences2002
- Author(s)
  Kawabata.T., Fukuchi, S., Homma, K., Ota, M., Araki, J., Ito, T., Ichiyoshi, N., Nishikawa.K.
- Journal Title
  
  Nucl.Acids Res. 30(1)
  
  Pages: 294-298
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome2002
- Author(s)
  Homma, K., Fukuchi, S., Kawabata, T., Ota, M., Nishikawa, K.
- Journal Title
  
  Gene 294(1-2)
  
  Pages: 25-33
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] 蛋白質立体構造予測データベースGTOP2001
- Author(s)
  川端猛, 西川建
- Journal Title
  
  蛋白質核酸酵素増刊号「ゲノムサイエンスの新たなる挑戦」 46
  
  Pages: 2592-2597
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] GTOP : a database of protein 3D structure prediction2001
- Author(s)
  Kawabata, T., Nishikawa, K.
- Journal Title
  
  Tanpakushitsu Kakusan Kouso, Extra Issue "A new challenge for genome science". 46
  
  Pages: 2592-2597
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Knowledge-based potential defined for a rotamer library to design prote in sequences2001
- Author(s)
  Ota, M., Isogai, Y., Nishikawa, K.
- Journal Title
  
  Protein Engineer 14(8)
  
  Pages: 557-564
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Protein surface amino-acid compositions distinctively differ between thermophilic and mesophilic bacteria2001
- Author(s)
  Fukuchi, S., Nishikawa.K.
- Journal Title
  
  J.Mol.Biol. 309(4)
  
  Pages: 835-843
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Knowledge-based potential defined for a rotamer library to design protein sequences2001
- Author(s)
  Ota.M., Isogai, Y., Nishikawa, K.
- Journal Title
  
  Protein Engineer. 14(8)
  
  Pages: 557-564
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Protein surface amino-acid compositions distinctively differ between thermophilic and mesophilic bacteria2001
- Author(s)
  Fukuchi, S., Nishikawa, K.
- Journal Title
  
  J. Mol. Biol. 309(4)
  
  Pages: 835-843
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] On prediction for protein 3D structure2001
- Author(s)
  Nishikawa, K.
- Journal Title
  
  Computer Today 18
  
  Pages: 10-15
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Directional gene distributions of two mycoplasma species exhibited in the nucleotide composition space2001
- Author(s)
  Nakashima, H., Yamashita, S., Nishikawa, K.
- Journal Title
  
  Res.Comm.In Biochem., Cell ＆ Mol.Biol. 5
  
  Pages: 27-35
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Directional gene distributions of two mycoplasma species exhibited in the nucleotide composition space2001
- Author(s)
  Nakashima, H., Yamashita, S., Nishikawa, K.
- Journal Title
  
  Res. Comm. In Biochem., Cell ＆ Mol. Biol. 5
  
  Pages: 27-35
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Protein structure comparison using the Markov transition model of evolution.2000
- Author(s)
  Kawabata, T., Nishikawa, K.
- Journal Title
  
  PROTEINS 41(1)
  
  Pages: 108-122
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Structural/functional assignment of unknown bacteriphage T4 proteins by iterative database searches.2000
- Author(s)
  Kawabata, T., Arisaka, F., Nishikawa, K.
- Journal Title
  
  GENE 259(1-2)
  
  Pages: 223-233
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Structural/functional assignment of unknown bacteriphage T4 proteins by iterative database searches.2000
- Author(s)
  Kawabata, T., Arisaka, F., Nishikawa.K.
- Journal Title
  
  GENE 259(1-2)
  
  Pages: 223-233
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] The genomic DNA sequences of various species are distinctively distributed in nucleotide composition space.2000
- Author(s)
  Nakashima, H., Nishikawa, K.
- Journal Title
  
  Res.Comm.Biochem.Cell ＆ Mol.Biol. 4
  
  Pages: 25-45
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Protein structure comparison using the Markov transition model of evolution.2000
- Author(s)
  Kawabata, T., Nishikawa, K.
- Journal Title
  
  PROTEINS 41 (1)
  
  Pages: 108-122
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Prediction for protein 3D structure : from genome information to 3D structure2000
- Author(s)
  Nishikawa, K.
- Journal Title
  
  Seibutsu Butsuri 40 (5)
  
  Pages: 307-308
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Redesign of artificial globins. Effects of residue replacements at hydrophobic sites on the structural properties.2000
- Author(s)
  Isogai, Y., Ishii, A., Fujisawa, T., Ota, M., Nishikawa, K.
- Journal Title
  
  Biochemistry 39(19)
  
  Pages: 5683-5690
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] The genomic DNA sequences of various species are distinctively distributed in nucleotide composition space.2000
- Author(s)
  Nakashima, H., Nishikawa, K.
- Journal Title
  
  Res. Comm. Biochem. Cell ＆ Mol. Biol. 4
  
  Pages: 25-45
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] Redesign of artificial globins. Effects of residue replacements at hydrophobic sites on the structural properties.2000
- Author(s)
  Isogai, Y., Ishii A., Fujisawa, T., Ota, M., Nishikawa, K.
- Journal Title
  
  Biochemistry 39 (19)
  
  Pages: 5683-5690
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Journal Article] タンパク質の立体構造予測 : ゲノム情報からの立体構造予測2000
- Author(s)
  西川建
- Journal Title
  
  生物物理 40(5)
  
  Pages: 307-308
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-12207002
[Presentation] Development of an order/disorder assignment method for protein molecules and its application to the human proteome2010
- Author(s)
  K. Nishikawa
- Organizer
  PepCon-2010
- Place of Presentation
  Beijing, China
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] 天然変性タンパク質のゲノム情報解析2009
- Author(s)
  西川建
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本市
- Year and Date
  2009-05-20
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] 天然変性タンパク質のゲノム情報解析2009
- Author(s)
  西川建
- Organizer
  第9回日本蛋白質科学会
- Place of Presentation
  熊本
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] ミトコンドリア蛋白質は天然変性領域をもつか?2009
- Author(s)
  細田和男、福地佐斗志、西川建
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本市
- Year and Date
  2009-05-21
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] ヒト全タンパク質の未知領域を対象とした構造予測2009
- Author(s)
  富井健太郎、福地佐斗志、西川建
- Organizer
  第9回日本蛋白質科学会年会
- Place of Presentation
  熊本市
- Year and Date
  2009-05-21
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] ヒト・タンパク質の構造ドメイン/天然変性領域への区分2008
- Author(s)
  福地佐斗志, 細田和男, 西川建
- Organizer
  第31回日本分子生物学
- Place of Presentation
  神戸
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] ヒトタンパク質の構造ドメイン・天然変性領域への区分2008
- Author(s)
  福地佐斗志, 細田和男, 西川建
- Organizer
  第31回日本分子生物学会年会
- Place of Presentation
  神戸
- Year and Date
  2008-12-12
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] 天然変性蛋白質の特性:情報解析からわかったこと2008
- Author(s)
  西川建
- Organizer
  第8回日本蛋白質科学会
- Place of Presentation
  東京
- Data Source
  KAKENHI-PROJECT-19310133
[Presentation] 真核生物タンパク質のドメイン・不規則領域の推定2007
- Author(s)
  福地佐斗志、西川建
- Organizer
  第30回日本分子生物学会年会
- Place of Presentation
  パシフィコ横浜、横浜市
- Year and Date
  2007-12-14
- Data Source
  KAKENHI-PROJECT-18017025
[Presentation] Intrinsic disorder of membrane proteins in the human proteome2007
- Author(s)
  K. Nishikawa, Y. Minezaki
- Organizer
  The 21st Symposium of The Protein Society
- Place of Presentation
  ボストン
- Year and Date
  2007-07-23
- Data Source
  KAKENHI-PROJECT-19310133

1. UMEYAMA Hideaki (20050619)

# of Collaborated Projects: 5 results

# of Collaborated Products: 0 results
2. KOBAYASHI Kaoru (20225494)

# of Collaborated Projects: 4 results

# of Collaborated Products: 2 results
3. MITAKU Shigeki (10107542)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
4. KIDERA Akinori (00186280)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
5. TATENO Yoshio (00202424)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
6. GOJOBORI Takashi (50162136)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
7. SAITOU Naruya (30192587)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
8. SUGAWARA Hideaki (80231372)

# of Collaborated Projects: 3 results

# of Collaborated Products: 1 results
9. IKEO Kazuho (20249949)

# of Collaborated Projects: 3 results

# of Collaborated Products: 0 results
10. GO Mitiko (70037290)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
11. WAKO Hiroshi (60158607)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
12. FUKUCHI Satoshi (70360336)

# of Collaborated Projects: 2 results

# of Collaborated Products: 8 results
13. GO Nobuhiro (50011549)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
14. IMANISHI Tadashi (80270461)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. YURA Kei (50252226)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. YOMO Tetsuya (00222399)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. ISHIMORI Koichiro (20192487)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. YUTANI Katsuhide (90089889)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. SHIBA Kiyotaka (40196415)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. IWADATE Mitsuo (10327447)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. KINJO Akira (30370117)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. OKUBO Kosaku (40233069)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. 中村春木 (80134485)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. 太田元規 (40290895)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. 北上始 (50234240)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. 磯野克己 (70011640)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. 野口俊之 (90172775)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
28. 森島績 (50026093)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
29. 熊谷泉 (10161689)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
30. 諏訪牧子 (30242241)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
31. BRYANT Steve

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
32. SIMON Eastea

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
33. MAKHATADZE G

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results

NISHIKAWA Ken 西川 建

NISHIKAWA Kwn 西川 健

Research Projects

Research Products

Co-Researchers

Computational analysis of human proteins addressing the relationship between intrinsic disorder and alternative splicingPrincipal Investigator

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転写因子の比較ゲノム情報解析:原核型との対比における真核型転写因子の差異と特性Principal Investigator

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微生物ゲノムを対象とした機能アノテーション全自動化システムの開発Principal Investigator

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Developing a new protein homology-modeling method with high precisionPrincipal Investigator

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ゲノム情報からのタンパク質構造の分類と予測Principal Investigator

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Experimental study to verify structural changes of proteins taken place in the evolutionary processPrincipal Investigator

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NISHIKAWA Ken 西川建

NISHIKAWA Kwn 西川健

[Journal Article] 長大な不規則領域をもつ蛋白質 : ヒト転写因子を例として2006