Nishimura Yuki 西村祐貴

Researcher Number	20783012
Other IDs
Affiliation (Current)	2025: 東京大学, 大学院新領域創成科学研究科, 助教
Affiliation (based on the past Project Information) *help	2022 – 2024: 東京大学, 大学院新領域創成科学研究科, 助教 2020: 東京大学, 大学院理学系研究科(理学部), 特任助教 2018 – 2019: 国立研究開発法人理化学研究所, バイオリソース研究センター, 特別研究員 2016 – 2017: 国立研究開発法人理化学研究所, バイオリソースセンター, 特別研究員
Review Section/Research Field	Principal Investigator Complex systems / Basic Section 45030:Biodiversity and systematics-related / Evolutionary biology
Keywords	Principal Investigator 有中心粒太陽虫類 / ミトコンドリアゲノム / メタゲノム / 未培養微生物 / 微生物ダークマター / メタゲノム解析 / DPANN / CPR / 有孔虫類 / C-to-U型RNAエディティング … More / PPRタンパク質 / DYWドメイン / RNAエディティング / ネコブカビ類 / DYW型PPRタンパク質 / C-to-U RNAエディティング / 転写後修飾 / 転移性イントロン / eukaryogenesis / スプライソソーム / ミトコンドリア / グループIイントロン / カタブレファリス類 / スプライソソーマルイントロン / グループIIイントロン … More Except Principal Investigator スーパーコンピュータ / 空間的オミックス解析 / エピゲノム / RNA解析 / ゲノム・メタゲノム / 次世代シーケンサー / バイオインフォマティクス / シングルセル解析 / オミックス解析 / メタゲノム / ゲノム Less

未培養系統群CPR/DPANNが優占する生態系のポストコッホ解析Principal Investigator
- Principal Investigator
  
  西村祐貴
- Project Period (FY)
  2022 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
- Review Section
  
  Complex systems
- Research Institution
  The University of Tokyo
Platform for Advanced Genome Science
- Principal Investigator
  
  黒川顕
- Project Period (FY)
  2022 – 2027
- Research Category
  
  Grant-in-Aid for Transformative Research Areas (platforms for Advanced Technologies and Research Resources)
- Research Institution
  National Institute of Genetics
The distribution and evolution of C-to-U RNA editing in mitochondriaPrincipal Investigator
- Principal Investigator
  
  Nishimura Yuki
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Early-Career Scientists
- Review Section
  
  Basic Section 45030:Biodiversity and systematics-related
- Research Institution
  The University of Tokyo
  Institute of Physical and Chemical Research
Study on spliceosomal intron evolution through inspecting mitochondrial intronsPrincipal Investigator
- Principal Investigator
  
  Nishimura Yuki
- Project Period (FY)
  2016 – 2017
- Research Category
  
  Grant-in-Aid for Research Activity Start-up
- Research Field
  
  Evolutionary biology
- Research Institution
  Institute of Physical and Chemical Research

All 2024 2023 2022 2020 2019 2018 2017 2016 Other

All Journal Article Presentation Book Other

[Book] Pythonで実践　生命科学データの機械学習2023
- Author(s)
  西村祐貴、綿野桂人、岩崎渉
- Total Pages
  445
- Publisher
  羊土社
- ISBN
  9784758122634
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024
- Author(s)
  Nishimura, L., Tanino, A., Ajimoto, M., Katsumura, T., Ogawa, M., Koganebuchi, K., Waku, D., Kumagai, M., Sugimoto, R., Nakaoka, H., Oota, H., & Inoue, I.
- Journal Title
  
  PloS one
  
  Volume: 19(1) Issue: 1 Pages: e0295924-e0295924
- DOI
  10.1371/journal.pone.0295924
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-21K13141, KAKENHI-PROJECT-23KF0206, KAKENHI-PROJECT-21K00996, KAKENHI-PROJECT-22KF0092, KAKENHI-PROJECT-22KJ1416, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23H00009, KAKENHI-PROJECT-21H00605
[Journal Article] Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila2024
- Author(s)
  Kato Shingo、Tahara Yuhei O.、Nishimura Yuki、Uematsu Katsuyuki、Arai Takahiro、Nakane Daisuke、Ihara Ayaka、Nishizaka Takayuki、Iwasaki Wataru、Itoh Takashi、Miyata Makoto、Ohkuma Moriya
- Journal Title
  
  Journal of Bacteriology
  
  Volume: 206 Issue: 2
- DOI
  10.1128/jb.00351-23
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K19141, KAKENHI-PROJECT-21K07020, KAKENHI-PLANNED-19H05689, KAKENHI-PUBLICLY-22H04881, KAKENHI-ORGANIZER-22H05065, KAKENHI-PLANNED-22H05066
[Journal Article] Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals2023
- Author(s)
  Merve Bilgic、Quan Wu、Taeko Suetsugu、Atsunori Shitamukai、Yuji Tsunekawa、Tomomi Shimogori、Mitsutaka Kadota、Osamu Nishimura、Shigehiro Kuraku、Hiroshi Kiyonari、Fumio Matsuzaki
- Journal Title
  
  eLife
  
  Volume: －
- DOI
  10.7554/elife.91406.2
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Single-cell transcriptome atlas of Drosophila gastrula 2.02023
- Author(s)
  Shunta Sakaguchi、Sonoko Mizuno、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Tadashi Uemura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
- Journal Title
  
  Cell Reports
  
  Volume: 42(7) Issue: 7 Pages: 112707-112707
- DOI
  10.1016/j.celrep.2023.112707
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state2023
- Author(s)
  Xiao Muran、、、、Yokoyama Akihiko、、、、、Inoue Daichi
- Journal Title
  
  Nature Communications
  
  Volume: 14 Issue: 1 Pages: 1-22
- DOI
  10.1038/s41467-023-44081-6
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22KK0119, KAKENHI-PROJECT-21K08385, KAKENHI-PROJECT-20H03717, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-22H00455, KAKENHI-PROJECT-23K24368
[Journal Article] Squalomix: shark and ray genome analysis consortium and its data sharing platform2022
- Author(s)
  Nishimura Osamu、Sakamoto Tatsuya、Semba Yasuko、Yamauchi Shinya、Yamada Kazuyuki、Nishida Kiyonori、Kiyatake Itsuki、Sato Keiichi、Hyodo Susumu、Kadota Mitsutaka、Uno Yoshinobu、Kuraku Shigehiro
- Journal Title
  
  F1000Research
  
  Volume: 11 Pages: 1077-1077
- DOI
  10.12688/f1000research.123591.1
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22K19312, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-20H03269, KAKENHI-PROJECT-20J22659, KAKENHI-PROJECT-22KJ2901, KAKENHI-PROJECT-22K15088, KAKENHI-PUBLICLY-21H00428, KAKENHI-PROJECT-23K21320
[Journal Article] Repeated translocation of a supergene underlying rapid sex chromosome turnover in <i>Takifugu</i> pufferfish2022
- Author(s)
  Kabir Ahammad、Ieda Risa、Hosoya Sho、Fujikawa Daigaku、Atsumi Kazufumi、Tajima Shota、Nozawa Aoi、Koyama Takashi、Hirase Shotaro、Nakamura Osamu、Kadota Mitsutaka、Nishimura Osamu、Kuraku Shigehiro、Nakamura Yasukazu、Kobayashi Hisato、Toyoda Atsushi、Tasumi Satoshi、Kikuchi Kiyoshi
- Journal Title
  
  Proceedings of the National Academy of Sciences
  
  Volume: 119 Issue: 23 Pages: 1901-1909
- DOI
  10.1073/pnas.2121469119
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05833, KAKENHI-PROJECT-22H04925, KAKENHI-PROJECT-23K21282
[Journal Article] AID法と4C解析法を組み合わせた核内セントロメア構造の解析2022
- Author(s)
  西村　浩平、深川　竜郎、嘉村　巧
- Journal Title
  
  細胞
  
  Volume: 54(11) Pages: 667-670
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] 植物ホルモン・オーキシンによるタンパク質分解系（AID法）を利用した核内セントロメア構造の解析2022
- Author(s)
  西村　浩平、深川　竜郎、嘉村　巧
- Journal Title
  
  アグリバイオ
  
  Volume: 6(13) Pages: 1259-1263
- Data Source
  KAKENHI-PROJECT-22H04925
[Journal Article] Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes2022
- Author(s)
  Yazaki Euki、Yabuki Akinori、Nishimura Yuki、Shiratori Takashi、Hashimoto Tetsuo、Inagaki Yuji
- Journal Title
  
  Frontiers in Ecology and Evolution
  
  Volume: 10 Pages: 1030570-1030570
- DOI
  10.3389/fevo.2022.1030570
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06792, KAKENHI-PROJECT-18KK0203, KAKENHI-PUBLICLY-22H04881
[Journal Article] Division of functional roles for termite gut protists revealed by single-cell transcriptomes2020
- Author(s)
  Nishimura Yuki、Otagiri Masato、Yuki Masahiro、Shimizu Michiru、Inoue Jun-ichi、Moriya Shigeharu、Ohkuma Moriya
- Journal Title
  
  The ISME Journal
  
  Volume: 14 Issue: 10 Pages: 2449-2460
- DOI
  10.1038/s41396-020-0698-z
- Peer Reviewed
- Data Source
  KAKENHI-PLANNED-19H05689, KAKENHI-PROJECT-17H01447, KAKENHI-PROJECT-18K14783
[Journal Article] Mitochondrial Genomes of Hemiarma marina and Leucocryptos marina Revised the Evolution of Cytochrome c Maturation in Cryptista2020
- Author(s)
  Nishimura Yuki、Kume Keitaro、Sonehara Keito、Tanifuji Goro、Shiratori Takashi、Ishida Ken-ichiro、Hashimoto Tetsuo、Inagaki Yuji、Ohkuma Moriya
- Journal Title
  
  Frontiers in Ecology and Evolution
  
  Volume: 8 Pages: 140-140
- DOI
  10.3389/fevo.2020.00140
- NAID
  120007132656
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18KK0203, KAKENHI-PLANNED-19H05689, KAKENHI-PROJECT-18K14783
[Journal Article] Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127.2019
- Author(s)
  Yuki Nishimura, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Moriya Ohkuma, Yuji Inagaki
- Journal Title
  
  Scientific Reports
  
  Volume: 9 Issue: 1 Pages: 4850-4850
- DOI
  10.1038/s41598-019-41238-6
- NAID
  120007128095
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18K14783, KAKENHI-PROJECT-18KK0203, KAKENHI-PROJECT-16H04826, KAKENHI-PROJECT-17H01447
[Journal Article] Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus2018
- Author(s)
  Yuki Masahiro、Sakamoto Mitsuo、Nishimura Yuki、Ohkuma Moriya
- Journal Title
  
  International Journal of Systematic and Evolutionary Microbiology
  
  Volume: 68 Issue: 2 Pages: 596-601
- DOI
  10.1099/ijsem.0.002549
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-17H01447, KAKENHI-PROJECT-16H07451
[Journal Article] Mitochondrial genome of Palpitomonas bilix: derived genome structure and ancestral system for cytochrome c maturation2016
- Author(s)
  Nishimura Y, Tanifuji G, Kamikawa R, Yabuki A, Hashimoto T, Inagaki Y
- Journal Title
  
  Genome Biology and Evolution
  
  Volume: 8 Issue: 10 Pages: 3090-3098
- DOI
  10.1093/gbe/evw217
- NAID
  120007129285
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-15H05231, KAKENHI-WRAPUP-16H01703, KAKENHI-PROJECT-15H05606, KAKENHI-PROJECT-16H07451, KAKENHI-PROJECT-26840123, KAKENHI-PROJECT-15K14591, KAKENHI-PROJECT-16H04826
[Presentation] 進化時間と祖先状態推定に基づき共進化・対偶遺伝子ペアを検出する新規系統プロファイリング法の開発2024
- Author(s)
  西村祐貴、大前公保、富永賢人、岩崎渉
- Organizer
  第18回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] オオムギ突然変異系統のエキソーム解析による出穂期関連突然変異遺伝子の探索2024
- Author(s)
  武田尚馬、大熊眞歩、伊吹千尋、 Ajmal Mandozai、西村和紗、門田有希、加藤鎌司、西田英隆
- Organizer
  日本育種学会第145回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 抗酸化タンパク質セレノプロテインによる造血制御機構2024
- Author(s)
  青山有美、山嵜博未、西村耕太郎、臧維嘉、小池優依、伊藤裕美、福本未記、高折晃史、井上大地.
- Organizer
  第28回造血器腫瘍研究会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 造血におけるセレノプロテイン群によるレドックス制御機構2023
- Author(s)
  青山有美、山嵜博未、西村耕太郎、高折晃史、井上大地.
- Organizer
  第76回日本酸化ストレス学会学術集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Non-coding RNA transcription and super-enhancer activation facilitate 3D genome structure.2023
- Author(s)
  Akira Nishimura、Makiko Sasaki、Riski Muhaimin、Yukie Tanaka、Tomohiro Morio、Masatoshi Takagi、Takeshi Isoda
- Organizer
  The 14th International Workshop on Advanced Genomics
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 造血におけるセレノプロテイン群によるレドックス制御機構2023
- Author(s)
  青山有美、山嵜博未、西村耕太郎、高折晃史、井上大地.
- Organizer
  第85回日本血液学会学術集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 四倍体ブルーベリーにおける高密度連鎖地図を用いた遺伝様式の検討2023
- Author(s)
  長坂京香、西村和紗、元木航、山形啓悟、西山総一郎、山根久代、田尾龍太郎、中野龍平、中﨑鉄也
- Organizer
  園芸学会令和5年度春季大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] CRISPR-Cas systemを持たない微生物に集積されている機能未知ドメインの解析2023
- Author(s)
  西村祐貴、石川聖人、大前公保、富永賢人、安田梨乃、岩崎渉
- Organizer
  第17回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] ハイブリッドメタゲノム解析によるCPR/DPANNの宿主推定2023
- Author(s)
  西村祐貴
- Organizer
  第35回日本Archaea研究会講演会
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] Seasonal abundance variation of groundwater microbiome dominated by phylum Patescibacteria2023
- Author(s)
  Yuki Nishimura, Kimiho Omae, Kento Tominaga, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Wataru Iwasaki
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] オオムギ出穂期突然変異体のエキソーム解析と遺伝解析による原因遺伝子の探索2023
- Author(s)
  大熊眞歩、西村和紗、門田有希、加藤鎌司、西田英隆
- Organizer
  第15回中国地域育種談話会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 空間情報を付加したショウジョウバエ原腸胚の1細胞トランスクリプトームアトラス2023
- Author(s)
  Shunta Sakaguchi、Sonoko Mizuno、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Tadashi Uemura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] コムギ近縁野生種Aegilops umbellulata Zhuk.におけるうどんこ病菌侵入後抵抗性の原因遺伝子座の同定2023
- Author(s)
  河村凌、岡田萌子、小村翔也、清水健太郎、西村和紗、井上喜博、吉田健太郎
- Organizer
  日本育種学会第144回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Shark and ray reproduction dissected with comparative DNA informatics2023
- Author(s)
  Shigehiro Kuraku、Kazuaki Yamaguchi、Taiki Niwa、Yuta Ohishi、Osamu Nishimura、Mitsutaka Kadota、and Yoshinobu Uno
- Organizer
  9th International Symposium on the Biology of Vertebrate Sex Determination 2023
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] オオムギ出穂期突然変異体のエキソーム解析による原因遺伝子の探索及び遺伝解析2023
- Author(s)
  大熊眞歩、西村和紗、門田有希、加藤鎌司、西田英隆
- Organizer
  日本育種学会第144回講演会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Estimation of CPR hosts based on horizontal gene transfers identified by high-quality genomes / 高品質ゲノムから検出された遺伝子水平伝播に基づくCPRの宿主推定2023
- Author(s)
  Yuna Nakagawa, Yuki Nishimura, Kimiho Omae, Kento Tominaga, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Wataru Iwasaki
- Organizer
  日本微生物生態学会第36回浜松大会
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] Squalomixコンソーシアムによるサメ・エイ類の分子生物学研究：脊椎動物の進化と多様性の成立ちを理解するために2023
- Author(s)
  山口和晃、川口茜、宇野好宣、門田満隆、西村理、松本瑠偉、喜屋武樹、加登岡大希、都築信隆、山内信弥、山田一幸、兵藤晋、佐藤圭一、工樂樹洋
- Organizer
  第46回日本分子生物学会年会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 非コードRNA転写とスーパーエンハンサー活性化によるゲノムの3次元構造維持機構2022
- Author(s)
  西村聡、佐々木麻起子、高木正稔、磯田健志
- Organizer
  第81回日本癌学会学術総会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] 網羅的な遺伝子水平伝播の検出によるCPR/DPANN宿主予測の試み2022
- Author(s)
  西村祐貴、大前公保、富永賢人、増田幸子、柴田ありさ、白須賢、岩崎渉
- Organizer
  日本微生物生態学会第35回大会
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] 樹状細胞分化におけるIrf8遺伝子発現を制御するエンハンサー群の相互作用2022
- Author(s)
  山﨑貴弥、西村耕太郎、西山晃、田村智彦
- Organizer
  第84回日本血液学会学術集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] Deep single-cell transcriptome atlas of Drosophila gastrula2022
- Author(s)
  Shunta Sakaguchi、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
- Organizer
  第15回日本ショウジョウバエ研究集会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ファージ防衛機構を欠く細菌の代替戦略を対偶遺伝学で探る2022
- Author(s)
  西村祐貴
- Organizer
  2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会（IIBMP2022）
- Invited
- Data Source
  KAKENHI-PUBLICLY-22H04881
[Presentation] Deep single-cell transcriptome atlas of Drosophila gastrula2022
- Author(s)
  Shunta Sakaguchi、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
- Organizer
  日本発生生物学会第55回大会
- Data Source
  KAKENHI-PROJECT-22H04925
[Presentation] ヤマトシロアリ腸内に共生する原生生物の多様性と機能の解析2019
- Author(s)
  西村祐貴、佐藤渚、大熊盛也
- Organizer
  日本微生物生態学会第33回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 難培養性原生生物におけるシングルセルトランスクリプトーム:シロアリ共生原生生物をモデルとして2019
- Author(s)
  西村祐貴、小田切正人、雪真弘、守屋繁春、大熊盛也
- Organizer
  第13回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 日本進化学会第21回大会2019
- Author(s)
  西村祐貴、佐藤渚、石谷佳之、白鳥峻志、石田健一郎、橋本哲男、稲垣祐司, 大熊盛也
- Organizer
  Distribution of plant-type mitochondrial C-to-U RNA editing in diverse eukaryotes
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの比較解析2019
- Author(s)
  西村祐貴,　佐藤渚, 白鳥峻志, 石田健一郎, 橋本哲男, 稲垣祐司, 大熊盛也
- Organizer
  日本微生物資源学会第26回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Re-exploration of the protein performing plant-type C-to-U RNA editing in diverse2019
- Author(s)
  Yuki Nishimura, Nagisa Sato, Yoshiyuki Ishitani, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki, Moriya Ohkuma
- Organizer
  The 14th International Colloquim in Endocytobiology and Symbiosis
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Single cell transcriptome analyses of the symbiotic protists in termite gut2018
- Author(s)
  Yuki Nishimura, Masato Otagiri, Masahiro Yuki, Michiru Shimizu, Nagisa Sato, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  日本微生物生態学会第32回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] シロアリ腸内から分離された新規乳酸菌、Lactococcus reticulitermitis2018
- Author(s)
  雪真弘、坂本光央、西村祐貴、大熊盛也
- Organizer
  日本微生物資源学会第25回大会
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] 有中心粒太陽虫類におけるミトコンドリアゲノムの解析2018
- Author(s)
  西村祐貴、白鳥峻志、石田健一郎、橋本哲男、稲垣祐司
- Organizer
  第12回日本ゲノム微生物学会年会
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Single cell transcriptome analyses of the symbiotic protists in wood-feeding termites2018
- Author(s)
  Yuki Nishimura, Masato Otagiri, Masahiro Yuki, Michiru Shimizu, Nagisa Sato, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  17th International Symposium on Microbial Ecology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] シングルセルゲノム・トランスクリプトームによるシロアリ共生微生物の機能解析2018
- Author(s)
  西村祐貴
- Organizer
  つくば藻類・プロティストフォーラム
- Invited
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] Orphan protistology, accelerating in JAPAN2018
- Author(s)
  Takashi Shiratori, Akinori Yabuki, Euki Yazaki, Yuki Nishimura, Moriya Ohkuma, Katsunori Fujikura, Tetsuo Hashimoto, Yuji Inagaki, Ken-ichiro Ishida
- Organizer
  Joint Meeting of the Japan Society of Protistology and the Korean Society of Protozoologists
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-18K14783
[Presentation] ゲノムデータに基づくTrichosporonales目の系統解析2017
- Author(s)
  高島昌子、Sira Sriswasdi、西村祐貴、眞鍋理一郎、杉田隆、遠藤力也、岩崎渉、大熊盛也
- Organizer
  第11回日本ゲノム微生物学会年会
- Place of Presentation
  慶応大学
- Year and Date
  2017-03-02
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Molecular tinkering in the evolution of the membrane attachment mechanisms of the Rheg GTPase2017
- Author(s)
  Kristina Zahonova, Romana Petrzelkova , Euki Yazaki, Yuki Nishimura, Matus Valach, Stepanka Hrda, Vladimir Klimes, Yuji Inagaki, Gertraud Burger, Vladimir Hampl, Vyacheslav Yurchenko, Marek Elias
- Organizer
  15 th International Congress of Protistology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームによりシロアリ腸内原生生物の一種がキチン分解を通して効率的な窒素の利用に資することが示された2017
- Author(s)
  西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
- Organizer
  第50回日本原生生物学会大会&第1回日本共生生物学会大会合同大会
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] ハイブリッドゲノムも包含する真菌のゲノム分類: 多様な表現型を有するTrichosporonales目の特性解析2017
- Author(s)
  高島昌子、Sira Sriwasdi、杉田隆、西村祐貴、遠藤力也、大熊盛也、岩崎渉、眞鍋理一郎
- Organizer
  環境微生物系合同大会2017
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] Single cell transcriptomes of the symbiotic protists in the wood-feeding termites gut suggest that chitin degradation is assigned to a symbiotic species2017
- Author(s)
  Yuki Nishimura, Masato Otagiri, Yuki Masahiro, Jun-ichi Inoue, Shigeharu Moriya, Moriya Ohkuma
- Organizer
  15 th International Congress of Protistology
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2017
- Author(s)
  西村祐貴、小田切正人、雪真弘、井上潤一、守屋繁春、大熊盛也
- Organizer
  環境生物系合同大会2017
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] 真核生物における光合成生物の多様性とオルガネラ進化2016
- Author(s)
  西村祐貴
- Organizer
  第12回新産業酵母研究会講演会
- Place of Presentation
  産業技術研究所臨海副都心センター
- Invited
- Data Source
  KAKENHI-PROJECT-16H07451
[Presentation] シングルセルトランスクリプトームに基づくイエシロアリ共生原生生物の機能解明2016
- Author(s)
  西村祐貴、小田切正人、雪真弘、守屋繁春、大熊盛也
- Organizer
  日本微生物生態学会第31回横須賀大会
- Place of Presentation
  横須賀市文化会館
- Year and Date
  2016-10-23
- Data Source
  KAKENHI-PROJECT-16H07451
[]

1. 黒川顕 (20343246)

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Nishimura Yuki 西村 祐貴

Research Projects

Research Products

Co-Researchers

未培養系統群CPR/DPANNが優占する生態系のポストコッホ解析Principal Investigator

Principal Investigator

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Review Section

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Platform for Advanced Genome Science

Principal Investigator

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The distribution and evolution of C-to-U RNA editing in mitochondriaPrincipal Investigator

Principal Investigator

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Study on spliceosomal intron evolution through inspecting mitochondrial intronsPrincipal Investigator

Principal Investigator

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[Book] Pythonで実践 生命科学データの機械学習2023

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[Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024

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[Journal Article] Cell surface architecture of the cultivated DPANN archaeon Nanobdella aerobiophila2024

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[Journal Article] Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals2023

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[Journal Article] Single-cell transcriptome atlas of Drosophila gastrula 2.02023

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[Journal Article] BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state2023

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[Journal Article] Squalomix: shark and ray genome analysis consortium and its data sharing platform2022

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[Journal Article] Repeated translocation of a supergene underlying rapid sex chromosome turnover in <i>Takifugu</i> pufferfish2022

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[Journal Article] AID法と4C解析法を組み合わせた核内セントロメア構造の解析2022

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[Journal Article] 植物ホルモン・オーキシンによるタンパク質分解系（AID法）を利用した核内セントロメア構造の解析2022

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[Journal Article] Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes2022

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Nishimura Yuki 西村祐貴

[Book] Pythonで実践　生命科学データの機械学習2023

[Presentation] オオムギ突然変異系統のエキソーム解析による出穂期関連突然変異遺伝子の探索2024

[Presentation] 四倍体ブルーベリーにおける高密度連鎖地図を用いた遺伝様式の検討2023