MIKAMI Bunzo 三上文三

Researcher Number	40135611
Other IDs
External Links
Affiliation (Current)	2025: 京都大学, 生存圏研究所, 研究員
Affiliation (based on the past Project Information) *help	2019 – 2023: 京都大学, 生存圏研究所, 研究員 2015 – 2018: 京都大学, 農学研究科, 教授 2016: 京都大学, 大学院農学研究科, 教授 2014: 京都大学, 大学院農学研究科, 教授 2012 – 2014: 京都大学, (連合)農学研究科(研究院), 教授 … More 2013: 京都大学, 大学院・農学研究科, 教授 2006 – 2013: Kyoto University, Graduate School of Agriculture, Professor, 農学研究科, 教授 2011: 京都大学, 大学院・農学研究科, 教授 2010: 京都大学, 農学研究科 2001 – 2005: KYOTO UNIVERSITY, Graduate School of Agriculture Associate Professor, 農学研究科, 助教授 1993 – 2000: 京都大学, 食糧科学研究所, 助教授 1988: 京都大学, 食糧科学研究所, 助手 1987: Research Institute for Food Science, Kyoto Univ., Research Associate, 食料科学研究所, 助手 1986: 京都大学, 食糧科学研究所, 助手 Less
Review Section/Research Field	Principal Investigator 応用微生物学・応用生物化学 / Applied biochemistry / Basic Section 38030:Applied biochemistry-related Except Principal Investigator Applied microbiology / Basic Section 38060:Applied molecular and cellular biology-related / 応用微生物学・応用生物化学 / 応用生物化学・栄養化学 / Applied molecular and cellular biology / Biophysics / Eating habits … More / 極限環境生物学 / 食品科学・栄養科学 / Fisheries chemistry / Science and Engineering Less
Keywords	Principal Investigator X線結晶構造解析 / タンパク質工学 / β-アミラーゼ / protein engineering / 構造生物学 / 酵素反応機構 / beta-amylase / β-amylase / X-ray crystal analysis / x-ray crystal analysis … More / X-ray crystallography / タンパク質結晶構造解析 / 酵素工学 / 酵素反応 / フレキシブルループ / タンパク質構造変化 / 酵素 / 応用構造生物学 / 非凍結結晶 / 結晶内酵素反応 / 酵素のpHによる構造変化 / 常温Ｘ線結晶構造解析 / 非凍結X線結晶構造解析 / 酵素基質複合体のpH変化 / キャピラリーＸ線構造解析 / 常温X線結晶構造解析 / 食糧関連酵素のＸ線結晶構造解析 / 食糧関連酵素のタンパク質工学 / 食糧関連酵素の構造生物学 / x線結晶構造解析 / 糖転移酵素 / トランスグルタミナーゼ / 食糧関連酵素・タンパク質 / 糖質関連酵素 / プロテイングルタミナーゼ / プルラナーゼ / アミラーゼ / mobile loop / protein eneineering / enzyme / nanobio / 可動ループ / ナノバイオ / starch binding domain / optimum pH / 至適pHの変換 / デンプン吸着ドメイン / 至適pH / starch-binding domain / starch binding / 澱粉吸着ドメイン / 澱粉吸着 / thermostability / 生デンプン分解 / enzyme-substrate complex / enzyme mechanism / 酵素基質複合体 / 食品関連酵素 … More Except Principal Investigator X線結晶構造解析 / アルギン酸 / Sphingomonas / グリコサミノグリカン / Sphingomonas属細菌 / X線結晶構造 / ABCトランスポーター / ムチン / プロバイオティクス / 常在機構 / 微生物叢 / X-ray crystallography / Bacillus / Alginate / アルギン酸リアーゼ / 蛋白質 / neuroserpin / drug design / neurodegeneration / dementia / serpin / スフィンゴモナス属細菌 / 細菌細胞表層構造 / 鞭毛 / フラジェリン / 細胞外マトリックス / 連鎖球菌 / 体腔 / ABCタンパク質 / オボトランスフェリン / γ-アミノ酪酸 / Bacteroides / 膜小胞 / 相利共生 / 動物宿主 / 腸内細菌叢 / 感染機構 / alzheimer / inhibitor / tPA / 種子 / 植物 / 食物 / アレルギー / 食品 / エピトープ / 小麦 / アレルゲン / 分解酵素 / 輸送体 / 酵素 / 動物細胞外マトリクス / 代謝酵素 / 宿主細胞外マトリクス / 輸送系 / 分解系 / 細菌 / 連鎖桿菌 / 遺伝子クラスター / 分解・代謝酵素 / フォスフォトランスフェラーゼ系 / 細胞外マトリクス / 病原性細菌 / Catalase activity / Myeloperoxidase, structure of / ヒト白血球 / カタラーゼ活性 / ミエロペルオキシダーゼの構造 / hydrophobic interaction / X-ray structural analysis / phosphatase / cold-active enzyme / low temperature environment / 変異体ライブラリー / 高分解能X線結晶構造解析 / 変異型酵素解析 / 低温活性機構 / 疎水性相互作用 / フォスファターゼ / 低温活性酵素 / 低温環境 / T4 phage / Pit / Receptor / Flagellum / Flagellin / 襞構造 / 細胞表層 / 鞭毛進化 / 鞭毛タンパク質 / フィンガードメイン / T4ファージ / レセプター / Protein module / Primary structure / function relationship of protein / Structure / Structural biology / Polysaccharide lyase / キサンタンリアーゼ / タンパク質・遺伝子の進化 / オートプロセシング / 翻訳後修飾 / エピメラーゼ / ヒドロラーゼ / 翻訳後修飾機構 / 糖質エピメラーゼ / 糖質加水分解酵素 / Bacillus属細菌 / タンパク質構造機能相関 / 構造生物学 / 多糖リアーゼ / Alginate lyase / X-ray diffraction / Pseudomonas aeruginosa / Bacterial infection / 緑膿菌 / 難治性細菌感染症 / Serum albumin / Ovotransferrin / Ovalbumin / Food functionality / Molten globule / Food proteins / タンパク質フラグメント / タンパク構造変換 / モルテングロビュール / 血清アルブミン / オボアルブミン / 食品機能特性 / モンテングロビュール / 食品蛋白質 / ヘムタンパク質 / ミエロペルオキシダーゼ / タンパク質X線構造解析 / ペルオキシダーゼ / フェリチン / キチナーゼ / フェノールオキシダーゼ / メタロプロテイン / リガンド / 金属 / 立体構造 / コンフォメーション病 / 神経変性 / フォールディング / 痴呆 / 生物物理 / 脳神経疾患 / Serpin / Conformational Diseases / Protein Folding / Dementia / Protein folding / serpins / ovalbumin / folding / conformational diseases / アルギン酸結合タンパク質 / 高分子輸送 / ヘテロ多糖 / プロテオリポソーム再構成系 / 基質結合タンパク質 / 輸送体分子進化 / Ｘ線結晶構造 / 酸性多糖輸送 / フラジェリン進化 / ペプチドグリカン分解酵素 / ペプチドグリカン構造 / 超チャネル / ペプチドグリカン加水分解楮 / 体腔形成細菌 / メタロペプチダーゼ / ペプチドグリカン加水分解酵素 / 外套膜 / カルシウム / バイオミネラリゼーシ / クモ系 / ペプチド / クモ糸様タンパク / 貝殻 / 凝集沈殿剤 / クモ糸様タンパク質 / 石灰化 / 炭酸カルシウム / マガキ / バイオミネラリゼーション / 反応機構 / 水和反応 / 不飽和グルクロニルヒドロラーゼ / ヒアルロン酸リアーゼ / ビニルエーテル結合 / 水和 / ラムノガラクツロナン / 不飽和ガラクツロニルヒドロラーゼ / 侵入・感染機構 / 植物細胞壁 / 枯草菌 / スフィンゴモナス / 結合タンパク質 / 高分子膜輸送 / 鉄イオン / 高次構造変換 / 分子スイッチ / トランスフェリン Less

Elucidation of enzyme function by X-ray crystal structure at room temperature.Principal Investigator
- Principal Investigator
  
  三上文三
- Project Period (FY)
  2022 – 2024
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Review Section
  
  Basic Section 38030:Applied biochemistry-related
- Research Institution
  Kyoto University
動物細胞外粘液物質を介した腸内優占菌と宿主との相利共生機構の解明
- Principal Investigator
  
  橋本渉
- Project Period (FY)
  2021 – 2023
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 38060:Applied molecular and cellular biology-related
- Research Institution
  Kyoto University
Elucidation of dynamics and colonization mechanisms of microbiota targeting animal extracellular matrices and their application development
- Principal Investigator
  
  Hashimoto Wataru
- Project Period (FY)
  2018 – 2020
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Review Section
  
  Basic Section 38060:Applied molecular and cellular biology-related
- Research Institution
  Kyoto University
Functional analysis of food proteins and food-related enzymes.Principal Investigator
- Principal Investigator
  
  Mikami Bunzo
- Project Period (FY)
  2016 – 2018
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied biochemistry
- Research Institution
  Kyoto University
Structural life science of pathogenic bacterial systems targeting animal host extracellular matrix for colonization and infection
- Principal Investigator
  
  HASHIMOTO Wataru
- Project Period (FY)
  2015 – 2017
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied molecular and cellular biology
- Research Institution
  Kyoto University
Elucidation of molecular structure of wheat protein causing severe allergic symptoms
- Principal Investigator
  
  MARUYAMA NOBUYUKI
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Eating habits
- Research Institution
  Kyoto University
A new strategy to develop therapeutic agents for neurodegenerative diseases by structural biology
- Principal Investigator
  
  Onda Maki
- Project Period (FY)
  2014 – 2016
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Osaka Prefecture University
Elucidation of mobile loop functions in food-related enzymesPrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied biochemistry
- Research Institution
  Kyoto University
Development of a new metalloprotein based on the structure and function of metalloenzymes
- Principal Investigator
  
  MASUDA Taro
- Project Period (FY)
  2012 – 2014
- Research Category
  
  Grant-in-Aid for Challenging Exploratory Research
- Research Field
  
  Applied molecular and cellular biology
- Research Institution
  Kyoto University
Structure and function of complex of substrate-binding protein and macromolecule-specific ABC transpoter
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Setsunan University
  Kyoto University
New strategy for the development of drugs to treat serpinopathies based on structural biology
- Principal Investigator
  
  ONDA Maki
- Project Period (FY)
  2011 – 2013
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  Biophysics
- Research Institution
  Osaka Prefecture University
Elucidation of mobile loop functions in food-related enzymesPrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  2009 – 2011
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied biochemistry
- Research Institution
  Kyoto University
Structure/function relationship and cell surface localization mechanism of bacterial flagelin
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  2008 – 2010
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Kyoto University
タンパク質の「揺らぎ」と機能発現における水分子の役割
- Principal Investigator
  
  村田幸作
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Review Section
  
  Science and Engineering
- Research Institution
  Kyoto University
Studies on the molecular mechanism of shell formation especially focusing on the silk-like proteins
- Principal Investigator
  
  TOYOHARA Haruhiko
- Project Period (FY)
  2006 – 2008
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Fisheries chemistry
- Research Institution
  Kyoto University
Loop technology of food related enzymes and food proteinsPrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  2006 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied biochemistry
- Research Institution
  Kyoto University
Molecular basis for cell surface architecture and evolution of bacterial flagellin by structure and unction analysis of the protein
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  2005 – 2007
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  Applied microbiology
- Research Institution
  Kyoto University
Research of the structural factors for eliciting the highly catalytic efficiency of cold-active enzyme
- Principal Investigator
  
  TSURUTA Hiroki
- Project Period (FY)
  2005 – 2006
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  極限環境生物学
- Research Institution
  Kobe University
Biochemical significance of the non-common amino acid sequences specifying the common functions of enzymes, polysaccharide lyases
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  2002 – 2004
- Research Category
  
  Grant-in-Aid for Scientific Research (B)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  Kyoto University
細菌細胞表層における体腔の高次空間構造と高分子輸送機構
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  2000
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas (A)
- Research Institution
  Kyoto University
Domain engineering of β-amylasePrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  2000 – 2001
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  KYOTO UNIVERSITY
Domain engineering of β-amylasePrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  1998 – 1999
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  KYOTO UNIVERSITY
鉄イオンによるトランスフェリンの分子スイッチ機構:高次構造変換過程のX線結晶構造解析
- Principal Investigator
  
  HIROSE Masaaki
- Project Period (FY)
  1997
- Research Category
  
  Grant-in-Aid for Scientific Research on Priority Areas
- Research Institution
  Kyoto University
Protein engineering of beta-amylasePrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  1996 – 1997
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  KYOTO UNIVERSITY
X-ray diffraction study and reaction mechanism of bacterial alginate lyase
- Principal Investigator
  
  MURATA Kousaku
- Project Period (FY)
  1995 – 1996
- Research Category
  
  Grant-in-Aid for Scientific Research (C)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  KYOTO UNIVERSITY
Analysis of beta-Amylase Action by X-Ray CrystallographyPrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  1994
- Research Category
  
  Grant-in-Aid for international Scientific Research
- Research Institution
  Kyoto University
Protein engineering of beta-amylasePrincipal Investigator
- Principal Investigator
  
  MIKAMI Bunzo
- Project Period (FY)
  1994 – 1995
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  応用微生物学・応用生物化学
- Research Institution
  KYOTO UNIVERSITY
Functional properties and conformational changes of food proteins - Roles of molten globule state
- Principal Investigator
  
  HIROSE Masaaki
- Project Period (FY)
  1993 – 1995
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  食品科学・栄養科学
- Research Institution
  KYOTO UNIVERSITY
ペルオキシダーゼのX線結晶構造解析と機能に関する研究
- Principal Investigator
  
  MORITA Yuhei
- Project Period (FY)
  1988
- Research Category
  
  Grant-in-Aid for General Scientific Research (C)
- Research Field
  
  応用生物化学・栄養化学
- Research Institution
  Kyoto University
Studies on the Structure and Function of Myeloperoxidase from Normal Human Leukocytes
- Principal Investigator
  
  MORITA Yuhei
- Project Period (FY)
  1986 – 1987
- Research Category
  
  Grant-in-Aid for General Scientific Research (B)
- Research Field
  
  応用生物化学・栄養化学
- Research Institution
  Kyoto University

[Book] 第4章2節グロブリンタンパク質2010
- Author(s)
  三上文三、丸山伸之、内海成、大豆のすべて(喜多村啓介他編集)
- Publisher
  サイエンスフォーラム
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR2024
- Author(s)
  Nakamura Tomoka、Takita Teisuke、Kuwata Kohei、Mizutani Kimihiko、Mikami Bunzo、Nakamura Satoshi、Yasukawa Kiyoshi
- Journal Title
  
  Scientific Reports
  
  Volume: 14 Issue: 1
- DOI
  10.1038/s41598-024-57819-z
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05441
[Journal Article] Subatomic structure of orthorhombic thaumatin at 0.89?? reveals that highly flexible conformations are crucial for thaumatin sweetness2024
- Author(s)
  Masuda Tetsuya、Suzuki Mamoru、Yamasaki Masayuki、Mikami Bunzo
- Journal Title
  
  Biochemical and Biophysical Research Communications
  
  Volume: 703 Pages: 149601-149601
- DOI
  10.1016/j.bbrc.2024.149601
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K05441
[Journal Article] Structure-Based Characterization and Improvement of an Enzymatic Activity of <i>Acremonium alcalophilum</i> Feruloyl Esterase2024
- Author(s)
  Phienluphon Apisan、Kondo Keiko、Mikami Bunzo、Teo Kenneth Sze Kai、Saito Kaori、Watanabe Takashi、Nagata Takashi、Katahira Masato
- Journal Title
  
  ACS Sustainable Chemistry & Engineering
  
  Volume: 12 Issue: 9 Pages: 3831-3840
- DOI
  10.1021/acssuschemeng.3c08222
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K05441
[Journal Article] Insights into the catalytic mechanism of <i>Grimontia hollisae</i> collagenase through structural and mutational analyses2023
- Author(s)
  Ueshima Saori、Yasumoto Mizuki、Kitagawa Yuto、Akazawa Kaho、Takita Teisuke、Tanaka Keisuke、Hattori Shunji、Mizutani Kimihiko、Mikami Bunzo、Yasukawa Kiyoshi
- Journal Title
  
  FEBS Letters
  
  Volume: 597 Issue: 19 Pages: 2473-2483
- DOI
  10.1002/1873-3468.14732
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22K05441
[Journal Article] Structure of thaumatin under acidic conditions: Structural insight into the conformations in lysine residues responsible for maintaining the sweetness after heat-treatment2022
- Author(s)
  Masuda Tetsuya、Okubo Kyohei、Baba Seiki、Suzuki Mamoru、Tani Fumito、Yamasaki Masayuki、Mikami Bunzo
- Journal Title
  
  Food Chemistry
  
  Volume: 389 Pages: 132996-132996
- DOI
  10.1016/j.foodchem.2022.132996
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-20K06238, KAKENHI-PROJECT-22K05441, KAKENHI-PROJECT-20H02932, KAKENHI-PROJECT-20K05875
[Journal Article] Crystal structure of Grimontia hollisae collagenase provides insights into its novel substrate specificity toward collagen2022
- Author(s)
  Ikeuchi Takeaki、Yasumoto Mizuki、Takita Teisuke、Tanaka Keisuke、Kusubata Masashi、Hayashida Osamu、Hattori Shunji、Mizutani Kimihiko、Mikami Bunzo、Yasukawa Kiyoshi
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 298 Issue: 8 Pages: 102109-102109
- DOI
  10.1016/j.jbc.2022.102109
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-22K05441, KAKENHI-PROJECT-18KK0285, KAKENHI-PROJECT-23K24590
[Journal Article] Crystal structures of N-myristoylated lipopeptide-bound HLA class I complexes indicate reorganization of B-pocket architecture upon ligand binding2022
- Author(s)
  Minori Asa, Daisuke Morita, Jin Kuroha, Tatsuaki Mizutani, Naoki Mori, Bunzo Mikami, Masahiko Sugita
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 298 Issue: 7 Pages: 102100-102100
- DOI
  10.1016/j.jbc.2022.102100
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-21K07078, KAKENHI-PROJECT-22K05441, KAKENHI-PROJECT-21H02968, KAKENHI-PROJECT-20J23335, KAKENHI-PROJECT-20K21615
[Journal Article] The role of calcium binding to the EF-hand-like motif in bacterial solute-binding protein for alginate import2021
- Author(s)
  Okumura Kenji、Maruyama Yukie、Takase Ryuichi、Mikami Bunzo、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  Bioscience, Biotechnology, and Biochemistry
  
  Volume: 85 Issue: 12 Pages: 2410-2419
- DOI
  10.1093/bbb/zbab170
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21H02156
[Journal Article] Bacterial inducible expression of plant cell wall-binding protein YesO through conflict between Glycine max and saprophytic Bacillus subtilis2020
- Author(s)
  Sugiura Haruka、Nagase Ayumi、Oiki Sayoko、Mikami Bunzo、Watanabe Daisuke、Hashimoto Wataru
- Journal Title
  
  Scientific Reports
  
  Volume: 10 Issue: 1 Pages: 18691-18691
- DOI
  10.1038/s41598-020-75359-0
- NAID
  120006951777
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H02166
[Journal Article] High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.2019
- Author(s)
  Nomura T, Iwase H, Saka N, Takahashi N, Mikami B, Mizutani K.
- Journal Title
  
  Acta Crystallogr D Struct Biol.
  
  Volume: 75 Issue: 4 Pages: 426-436
- DOI
  10.1107/s2059798319003000
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H04909
[Journal Article] Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host2019
- Author(s)
  Oiki Sayoko、Sato Masahiro、Mikami Bunzo、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  Bioscience, Biotechnology, and Biochemistry
  
  Volume: 83 Issue: 10 Pages: 1946-1954
- DOI
  10.1080/09168451.2019.1630250
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18H02166
[Journal Article] Structure of a serine-type glutathione S-transferase of Ceriporiopsis subvermispora and identification of the enzymatically important non-canonical residues by functional mutagenesis2019
- Author(s)
  Wan Osman Wan Hasnidah、Mikami Bunzo、Saka Naoki、Kondo Keiko、Nagata Takashi、Katahira Masato
- Journal Title
  
  Biochemical and Biophysical Research Communications
  
  Volume: 510 Issue: 1 Pages: 177-183
- DOI
  10.1016/j.bbrc.2019.01.076
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07307, KAKENHI-PROJECT-16H04909, KAKENHI-PROJECT-18K14636
[Journal Article] The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase.2019
- Author(s)
  Doubayashi D, Oki M, Mikami B, Uchida H.
- Journal Title
  
  J Biochem.
  
  Volume: 印刷中 Issue: 1 Pages: 67-75
- DOI
  10.1093/jb/mvz009
- NAID
  40021952190
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H04909
[Journal Article] Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices2019
- Author(s)
  Oiki Sayoko、Nakamichi Yusuke、Maruyama Yukie、Mikami Bunzo、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  PLOS ONE
  
  Volume: 14 Issue: 11 Pages: e0224753-e0224753
- DOI
  10.1371/journal.pone.0224753
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-18H02166
[Journal Article] Identification of key residues for activities of atypical glutathione S-transferase of Ceriporiopsis subvermispora, a selective degrader of lignin in woody biomass, by crystallography and functional mutagenesis2019
- Author(s)
  Osman Wan Hasnidah Wan、Mikami Bunzo、Saka Naoki、Kondo Keiko、Lin Meng-I、Nagata Takashi、Katahira Masato
- Journal Title
  
  International Journal of Biological Macromolecules
  
  Volume: 132 Pages: 222-229
- DOI
  10.1016/j.ijbiomac.2019.03.199
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-17K07307, KAKENHI-PROJECT-16H04909, KAKENHI-PROJECT-18K14636
[Journal Article] Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism2018
- Author(s)
  M. Oda, S. Inaba, N. Kamiya, G.-J. Bekker, B. Mikami
- Journal Title
  
  Biochim. Biophys. Acta, Proteins Proteomics
  
  Volume: 1866 Issue: 3 Pages: 415-425
- DOI
  10.1016/j.bbapap.2017.12.004
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K07331, KAKENHI-PROJECT-16H04909
[Journal Article] Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin.2018
- Author(s)
  Saka N, Iwamoto H, Malle D, Takahashi N, Mizutani K, Mikami B
- Journal Title
  
  Acta Crystallogr D Struct Biol.
  
  Volume: 74 Issue: 11 Pages: 1115-1123
- DOI
  10.1107/s2059798318014523
- Peer Reviewed / Open Access / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04909
[Journal Article] Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY44002018
- Author(s)
  Uchida H., Mikami B., Yamane-Tanabe A., Ito A., Hirano K., Oki M.
- Journal Title
  
  J. Biochem.
  
  Volume: 163 Issue: 4 Pages: 321-328
- DOI
  10.1093/jb/mvy004
- NAID
  40021524060
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H04909
[Journal Article] Role of the Tyr270 residue in 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti.2017
- Author(s)
  Kobayashi J., Yoshida H., Yagi T., Kamitori S., Hayashi H., Mizutani K., Takahashi N., Mikami B.
- Journal Title
  
  J. Biosci. Bioeng.
  
  Volume: 123 Issue: 2 Pages: 154-162
- DOI
  10.1016/j.jbiosc.2016.07.022
- NAID
  40021112404
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16H04909, KAKENHI-PROJECT-15K05573
[Journal Article] A bacterial ABC transporter enables import of mammalian host glycosaminoglycans2017
- Author(s)
  Oiki Sayoko、Mikami Bunzo、Maruyama Yukie、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 1069-1069
- DOI
  10.1038/s41598-017-00917-y
- NAID
  120006223605
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H04629
[Journal Article] A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate2017
- Author(s)
  Kaneko Ai、Uenishi Kasumi、Maruyama Yukie、Mizuno Nobuhiro、Baba Seiki、Kumasaka Takashi、Mikami Bunzo、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 292 Issue: 38 Pages: 15681-15690
- DOI
  10.1074/jbc.m117.793992
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-16K07701, KAKENHI-PROJECT-15H04629
[Journal Article] Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans2017
- Author(s)
  Oiki Sayoko、Kamochi Reiko、Mikami Bunzo、Murata Kousaku、Hashimoto Wataru
- Journal Title
  
  Scientific Reports
  
  Volume: 7 Issue: 1 Pages: 17005-17005
- DOI
  10.1038/s41598-017-16801-8
- NAID
  120006369452
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-15H04629, KAKENHI-PROJECT-16H04909
[Journal Article] "Silent" Amino Acid Residues at Key Subunit Interfaces Regulate the Geometry of Protein Nanocages.2016
- Author(s)
  Zhang S., Zang J., Zhang X., Chen H., Mikami B., Zhao G.
- Journal Title
  
  ACS Nano
  
  Volume: 10 Issue: 11 Pages: 10382-10388
- DOI
  10.1021/acsnano.6b06235
- Peer Reviewed / Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04909
[Journal Article] Conformational change in the active site of Streptococcal unsaturated glucuronyl hydrolase through site-directed mutagenesis at Asp-1152016
- Author(s)
  Yusuke Nakamichi, Sayoko Oiki, Bunzo Mikami, Kousaku Murata, and Wataru Hashimoto
- Journal Title
  
  The Protein Journal
  
  Volume: 35 Issue: 4 Pages: 300-309
- DOI
  10.1007/s10930-016-9673-y
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-15H04629, KAKENHI-PROJECT-16H04909
[Journal Article] Preliminary X-ray analysis of the binding domain of the soybean vacuolar sorting receptor complexed with a sorting determinant of a seed storage protein.2015
- Author(s)
  Maruyama, N., Goshi, T., Sugiyama, S., Niiyama, M., Adachi, H., Takano, K., Murakami, S., Inoue, T., Mori, Y., Matsumura, H., Mikami, B.
- Journal Title
  
  Acta Crystallogr. F Struct. Biol. Commun.
  
  Volume: 71 Issue: 2 Pages: 132-135
- DOI
  10.1107/s2053230x14027484
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054, KAKENHI-PROJECT-25286051
[Journal Article] Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity.2015
- Author(s)
  Masuda, T., Zhao, G., Mikami, B..
- Journal Title
  
  Biosci. Biotechnol. Biochem.
  
  Volume: 79 Pages: 45-50
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Metabolic fate of unsaturated glucuronic/iduronic acids from glycosaminoglycans: molecular identification and structure determination of streptococcal isomerase and dehydrogenase.2015
- Author(s)
  Maruyama Y., Oiki S., Takase R., Mikami B., Murata K., Hashimoto, W.
- Journal Title
  
  J. Biol. Chem.
  
  Volume: 290 Issue: 10 Pages: 6281-6292
- DOI
  10.1074/jbc.m114.604546
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity.2015
- Author(s)
  Masuda T., Zhao G. & Bunzo Mikami
- Journal Title
  
  Biosci., Biotechnol. Biochem.
  
  Volume: 79 Issue: 1 Pages: 45-50
- DOI
  10.1080/09168451.2014.962475
- Peer Reviewed / Acknowledgement Compliant
- Data Source
  KAKENHI-PROJECT-24658287
[Journal Article] Crystal structure of 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase, an NAD⁺-dependent dismutase from Mesorhizobium loti.2015
- Author(s)
  Mugo, A.N,. Kobayashi, J., Mikami, B., Yoshikane, Y., Yagi, T., Ohnishi, K.
- Journal Title
  
  Biochem. Biophys. Res. Commun.
  
  Volume: 456 Issue: 1 Pages: 35-40
- DOI
  10.1016/j.bbrc.2014.11.028
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Structure-based conversion of the coenzyme requirement of a short-chain dehydrogenase/reductase involved in bacterial alginate metabolism.2015
- Author(s)
  Takase, R., Mikami, B., Kawai, S., Murata, K., Hashimoto, W.
- Journal Title
  
  J. Biol. Chem.
  
  Volume: 289 Issue: 48 Pages: 33198-33214
- DOI
  10.1074/jbc.m114.585661
- NAID
  120005690199
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054, KAKENHI-PROJECT-26292044, KAKENHI-PROJECT-26660062
[Journal Article] Structure of a bacterial ABC transporter involved in the import of an acidic polysaccharide alginate2015
- Author(s)
  Yukie Maruyama, Takafumi Itoh, Ai Kaneko, Yu Nishitani, Bunzo Mikami, Wataru Hashimoto, and Kousaku Murata
- Journal Title
  
  Structure
  
  Volume: 23 Issue: 9 Pages: 1643-1654
- DOI
  10.1016/j.str.2015.06.021
- NAID
  120005627618
- Peer Reviewed / Acknowledgement Compliant / Open Access
- Data Source
  KAKENHI-PROJECT-26660062, KAKENHI-PROJECT-26292044, KAKENHI-PROJECT-15H04629
[Journal Article] Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity.2015
- Author(s)
  Ryuichi Takase, Yukie Maruyama, Sayoko Oiki, Bunzo Mikami, Kousaku Murata, and Wataru Hashimoto.
- Journal Title
  
  Proteins, In press (Prot-00467-2015)
  
  Volume: - Issue: 7 Pages: 934-947
- DOI
  10.1002/prot.25042
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-26292044, KAKENHI-PROJECT-15H04629
[Journal Article] Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin2014
- Author(s)
  Yusuke Nakamichi, Bunzo Mikami, Kousaku Murata. and Wataru Hashimoto
- Journal Title
  
  Journal of Biological Chemistry
  
  Volume: 289 Issue: 8 Pages: 4787-4797
- DOI
  10.1074/jbc.m113.522573
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J02291, KAKENHI-PROJECT-23580112, KAKENHI-PROJECT-24380054
[Journal Article] The crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins.2014
- Author(s)
  Masuda, T., Momoji, K., Hirata, T., Mikami, B.
- Journal Title
  
  FEBS J.
  
  Volume: 281 Issue: 11 Pages: 2659-2673
- DOI
  10.1111/febs.12812
- NAID
  120005646484
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054, KAKENHI-PROJECT-24658287
[Journal Article] Structure of 4-pyridoxolactonase from Mesorhizobium loti2014
- Author(s)
  Kobayashi J, Yoshikane Y, Yagi T, Baba S, Mizutani K, Takahashi N, Mikami B
- Journal Title
  
  Acta Crystallogr F Struct Biol Commun.
  
  Volume: 70 Issue: 4 Pages: 424-432
- DOI
  10.1107/s2053230x14003926
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues.2014
- Author(s)
  Masuda, T., Mikami, B., Tani, F.
- Journal Title
  
  Biochimie.
  
  Volume: 106 Pages: 33-38
- DOI
  10.1016/j.biochi.2014.07.016
- NAID
  120005682566
- Peer Reviewed / Open Access
- Data Source
  KAKENHI-PROJECT-24380054, KAKENHI-PROJECT-25450167
[Journal Article] Purification, crystallization and preliminary crystallographic analysis of soybean mature glycinin A1bB22013
- Author(s)
  Prak K, Mikami B, Itoh T, Fukuda T, Maruyama N, Utsumi S
- Journal Title
  
  Acta Crystallogr Sect F Struct Biol Cryst Commun.
  
  Volume: 69 Issue: 8 Pages: 937-941
- DOI
  10.1107/s1744309113019684
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III2012
- Author(s)
  B.Mikami, M.Ban, S.Suzuki, H.-J.Yoon, O.Miyake, M.Yamasaki, K.Ogura, Y.Maruyama, W.Hashimoto & K.Murata
- Journal Title
  
  Acta Cryst
  
  Volume: 68 Pages: 1207-1216
- NAID
  120004920434
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] Induced fit motion of a lid loop involved in catalysis of alginate lyase A1 III2012
- Author(s)
  Mikami B., Ban M., Suzuki S., Yoon HY., Miyake O, Yamasaki M., Maruyama Y., Hashimoto W., Murata K
- Journal Title
  
  Acta Crystallogr. Sect D Biol. Cryst
  
  Volume: (in press)
- NAID
  120004920434
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] Crystallization and preliminary X-ray analysis of alginate importer from Sphingomonas sp. A12012
- Author(s)
  Y.Maruyama, T.Itoh, Y.Nishitani, B. Mikami, W.Hashimoto & K.Murata
- Journal Title
  
  Acta Cryst
  
  Volume: F68 Pages: 317-320
- NAID
  120004025601
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter2012
- Author(s)
  Y.Nishitani, Y.Maruyama, T.Itoh, B.Mikami, W.Hashimoto & K.Murata
- Journal Title
  
  Biochemistry
  
  Volume: 51(17) Pages: 3622-3633
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] Crystal structure of a major seed storage protein, llS proglobulin, from Amaranthus hypochondriacus : insight into its physico-chemical properties2012
- Author(s)
  Tandang-Silvas MR. Cabanos CS. Carrazco Pena LD. De la Rosa AP, 0suna-Castro JA. Utsumi S. Mikami B, Maruyama N.
- Journal Title
  
  Food Chem
  
  Volume: 135 Issue: 2 Pages: 819-826
- DOI
  10.1016/j.foodchem.2012.04.135
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-24380054
[Journal Article] Induced-fit motion of a lid loop involved in catalysis in alginate lyase Al-III.2012
- Author(s)
  Mikami B.
- Journal Title
  
  Acta Crystallogr D Biol Crystallogr
  
  Volume: 68 Issue: 9 Pages: 1207-1216
- DOI
  10.1107/s090744491202495x
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-11J40009, KAKENHI-PROJECT-23380049, KAKENHI-PROJECT-23580112, KAKENHI-PROJECT-24380054
[Journal Article] Structure of β-1, 4-mannanase from the common sea hare Aplysia kurodai at 1.05 Å resolution2012
- Author(s)
  Kimihiko Mizutani, Sae Tsuchiya, Mayuko Toyoda, Yuko Naobu, Keiko Tomilaga, Keizo Yuasa, Nobuyuki Takahashi, Akihlko Tsuji and Bunzo Mikmi
- Journal Title
  
  Acta Crystallographica Section F
  
  Volume: 68 Issue: 10 Pages: 1164-1168
- DOI
  10.1107/s1744309112037074
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-12J04074, KAKENHI-PROJECT-24380054
[Journal Article] Crystallization and preliminary X-ray analysis of alginate importer from Sphingomonas sp2012
- Author(s)
  Maruyama Y., Itoh T., Nishitani Y., Mikami B., Hashimoto W., Murata K
- Journal Title
  
  A1. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun
  
  Volume: 68 Issue: 3 Pages: 317-320
- DOI
  10.1107/s1744309112001893
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity2012
- Author(s)
  Masuda T., Morimoto S., Mikami B. & Toyohara H.
- Journal Title
  
  Protein Sci
  
  Volume: 21 Issue: 6 Pages: 786-796
- DOI
  10.1002/pro.2061
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-22780303, KAKENHI-PROJECT-24658287
[Journal Article] Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex2011
- Author(s)
  Hashizume R., Maki Y., Mizutani K., Takahashi N., Matsubara H., Sugita A., Sato K., Yamaguchi S., Mikami B
- Journal Title
  
  J. Biol. Chem
  
  Volume: 286 Issue: 44 Pages: 38691-38702
- DOI
  10.1074/jbc.m111.255133
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] X-ray structures of transferrins and related proteins2011
- Author(s)
  Mizutani K., Toyoda M., Mikami B
- Journal Title
  
  Biochim Biophys Acta
  
  Volume: 1820 Issue: 3 Pages: 203-211
- DOI
  10.1016/j.bbagen.2011.08.003
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] Crystal structure of bacterial cell-surface alginate-binding protein with an M_75 peptidase motif.2011
- Author(s)
  Yukie Maruyama, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
- Journal Title
  
  Biochem. Biophys. Res.Commun 405(3)
  
  Pages: 411-416
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20380049
[Journal Article] Structural determinants of discrimination of NA + from NADH in yeast mitochondrial NADH kinase Pos52011
- Author(s)
  T.Ando, K.Ohashi, A.Ochiai, B, Mikami, S.Kawai & K.Murata
- Journal Title
  
  J.Biol.Chem
  
  Volume: 286(34) Pages: 29984-29992
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] The crystal structure of SDR-type pyridoxal 4-dehydrogenase of Mesorhizobium loti.2011
- Author(s)
  Chu H.N., Mikami B., 他2名
- Journal Title
  
  Biosci.Biotechnol.Biochem.
  
  Volume: 75 Pages: 388-390
- NAID
  10027898248
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] Crystal structure of bacterial cell-surface alginate-binding protein with an M_75 peptidase motif2011
- Author(s)
  Y.Maruyama, A.Ochiai, B.Mikami, W. Hashimoto & K.Murata
- Journal Title
  
  Biochem.Biophys.Res.Commun
  
  Volume: 405(3) Pages: 411-416
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase.2011
- Author(s)
  Yukie Maruyama, Asako Chuma, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
- Journal Title
  
  J.Mol.Biol. 407(1)
  
  Pages: 180-192
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20380049
[Journal Article] Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase2011
- Author(s)
  Y.Maruyama, A.Chuma, B.Mikami, W. Hashimoto & K.Murata
- Journal Title
  
  J.Mol.Biol
  
  Volume: 407(1) Pages: 180-192
- Data Source
  KAKENHI-PROJECT-23380049
[Journal Article] Expression, purification and preliminary crystallization of amaranth 11S proglobulin seed storage protein from Amaranthus hypochondriacus L.2010
- Author(s)
  Tandang-Silvas M.R., Mikami B., 他5名
- Journal Title
  
  Acta Cryatallogr.Sect.F
  
  Volume: 66 Pages: 919-922
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] High-throughput construction of expression system using yeast Pichia pastoris, and its application to membrane proteins.2010
- Author(s)
  Mizutani K., Mikami B., 他3名
- Journal Title
  
  Protein Expr.Purif.
  
  Volume: 77 Pages: 1-8
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article]2010
- Author(s)
  三上文三, 丸山伸之, 内海成
- Journal Title
  
  大豆のすべて (喜多村啓介他編集) 第4章2節2 グロブリンタンパク質(サイエンスフォーラム)
  
  Pages: 115-121
- Data Source
  KAKENHI-PROJECT-21380064
[Journal Article] Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ.2009
- Author(s)
  Wataru Hashimoto, Akihito Ochiai, Keiko Momma, Takafumi Itoh, Bunzo Mikami, Yukie Maruyama, Kousaku Murata
- Journal Title
  
  Biochem.Biophys.Res.Commun. 381
  
  Pages: 16-21
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20380049
[Journal Article] Crystal structure of a novel bacterial cell-surface flagellin binding to polysaccharide2008
- Author(s)
  Journal, Publications, Yukie, Maruyama, Misato, Momma, Bunzo, Mikami, Wataru, Hashimoto, Kousaku, Murata
- Journal Title
  
  Biochemstry 47
  
  Pages: 1393-1402
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Crystal structure of a novel bacterial cell-surface flagellin binding to polysaccharide.2008
- Author(s)
  Yukie Maruyama, Misato Momma, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
- Journal Title
  
  Biochemstry 47(5)
  
  Pages: 1393-1402
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20380049
[Journal Article] Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with UDP-N-acetylglucosamine and fosfomycin2008
- Author(s)
  H.-J., Yoon, S.-J., Lee, B., Mikami, H.-J., Park, J., Yoon, S.-W Suh
- Journal Title
  
  Proteins 71(2)
  
  Pages: 1032-1037
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Crystal structure of UDP-N-acetylglucosamine enolpyruvyl transferase from Haemophilus influenzae in complex with2008
- Author(s)
  H. -J. Yoon, S. -J. Lee, B. Mikami, H. -J. Park, J. Yoon, S. -W. Suh
- Journal Title
  
  Proteins 71
  
  Pages: 1032-1037
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Superchannel of bacteria : biological significance and new horizons2008
- Author(s)
  Kousaku, Murata, Shigeyuki, Kawai, Bunzo, Mikami, Wataru, Hashimoto
- Journal Title
  
  Bioscience, Biotechnology and Biochemistry 72
  
  Pages: 265-277
- NAID
  10027523626
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Superchannel of bacteria : biological significance and new horizons.2008
- Author(s)
  Kousaku Murata, Shigeyuki Kawai, Bunzo Mikami, Wataru Hashimoto
- Journal Title
  
  Biosci. Biotechnol. Biochem. 72(2)
  
  Pages: 265-277
- NAID
  10027523626
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-20380049
[Journal Article] Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1.2007
- Author(s)
  Z. Cui, Y. Maruyama, B. Mikami, W. Hashimoto, K. Murata
- Journal Title
  
  J. Mol. Biol. 374
  
  Pages: 384-398
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] A structural factor responsible for substrate recognition by Bacillus sp. GL1 xanthan lyase that acts specifically on pyruvated side chains of xanthan2007
- Author(s)
  Y., Maruyama, B., Mikami, W., Hashimoto, K., Murata
- Journal Title
  
  Biochemistry 46(3)
  
  Pages: 781-791
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Preliminary crystallographic analysis of L-2-keto-3-deoxyarabonate dehydratase, an enzyme involved in an2007
- Author(s)
  N. Shimada, B. Mikami, S. Watanabe, K. Makino
- Journal Title
  
  Acta Crystallogr. F 63
  
  Pages: 393-395
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rharnnosidase from Bacillus sp. GL12007
- Author(s)
  Z., Cui, Y., Maruyama, B., Mikami, W., Hashimoto, K., Murata
- Journal Title
  
  J., Mol. Biol 374(2)
  
  Pages: 384-398
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Preliminary crystallographic analysis of L-2-keto-3-deoxyarabonate dehydratase, an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism2007
- Author(s)
  N., Shimada, B., Mikami, S., Watanabe, K., Makino
- Journal Title
  
  Acta Crystallogr., F 63(5)
  
  Pages: 393-395
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] A structural factor responsible for substrate recognition by Bacillus sp. GL1 xanthan lyase that acts specifically on pyruvated side chains of xanthan.2007
- Author(s)
  Y.Maruyama, B.Mikami, W.Hashimoto, K.Murata
- Journal Title
  
  Biochemistry 46(3)
  
  Pages: 781-791
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Sequence and analysis of the 46.6-kb plasmid pAl from Sphingomonas sp. Al that corresponds to the typical IncP-113 plasmid backbone without any accessory gene2006
- Author(s)
  Karen, Mine, Harada, Yuji, Aso, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Plasmid 56
  
  Pages: 11-23
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Crystal structure of pullulanase : Evidence for parallel binding of oligosaccharides in the active site.2006
- Author(s)
  B.Mikami, H.Iwamoto, M.Dominggus, H.J.Yoon, E.Demirkan-Sarikaya, Y.Mezaki, Y.Katsuya
- Journal Title
  
  J. Mol. Biol. 359(3)
  
  Pages: 690-707
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Engineered membrane superchannel improves bioremediation potential of dioxin-degrading bacteria2006
- Author(s)
  Yuji, Aso, Yukiko, Miyamoto, Karen, Mine Harada, Keiko, Momma, Shigeyuki, Kawai, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Nature Biotechnot 24
  
  Pages: 188-189
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Crystal structure of pullulanase : Evidence for parallel binding of oligosaccharides in the active site2006
- Author(s)
  B., Mikami, H., Iwamoto, M., Dominggus, H.-J., Yoon, E., Demirkan-Sarikaya, Y., Mezaki, Y., Katsuya
- Journal Title
  
  J. Mol. Biol 359(3)
  
  Pages: 690-707
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Crystal structure of pullulanase: Evidence for parallel binding of oligosaccharides in the active site.2006
- Author(s)
  B. Mikami
- Journal Title
  
  J. Mol. Biol. 359(3)
  
  Pages: 690-707
- Description
  「研究成果報告書概要(和文)」より
- Peer Reviewed
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Structure of 8Salpha globulin, the major seed storage protein of mung bean2006
- Author(s)
  T., Itoh, R.N., Garcia, M., Adachi, Y., Maruyama, E.M., Tecson-Mendoza, B., Mikami, S., Utsumi
- Journal Title
  
  Acta Crystallogr., D 62(7)
  
  Pages: 824-832
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Structure of 8Salpha globulin, the major seed storage protein of mung bean.2006
- Author(s)
  T.Itoh, R.N.Garcia, M.Adachi, Y.Maruyama, E.M.Tecson-Mendoza, B.Mikami, S.Utsumi
- Journal Title
  
  Acta Crystallogr. D 62(7)
  
  Pages: 824-832
- Data Source
  KAKENHI-PROJECT-18380067
[Journal Article] Crystallization and preliminary X-ray analysis of alginate lyases Al-II and Al-II' from Sphingomonas sp. Al2005
- Author(s)
  Masayuki, Yamasaki, Kohei, Ogura, Satoko, Moriwaki, Wataru, Hashimoto, Kousaku, Murata, Bunzo, Mikami
- Journal Title
  
  Acta Crystallographica section 61
  
  Pages: 288-290
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Direct evidence for Sphingomonas sp. Al periplasmic proteins as macromolecule-binding proteins associated with the ABC transporter : molecular insights into alginate transport in the periplasm2005
- Author(s)
  Keiko, Momma, Yumiko, Mishima, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Biochemistry 44
  
  Pages: 5053-5064
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Proteomics-based identification of outer-membrane proteins responsible for import of macromolecules in Sphingomonas sp. Al : alginate-binding flagellin on the cell surface2005
- Author(s)
  Wataru, Hashimoto, Jinshan, He, Yushin, Wada, Hirokazu, Nankai, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Biochemistry 44
  
  Pages: 13783-13794
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] A structural basis for depolymerization of alginate by polysaccharide lyase family-72005
- Author(s)
  Masayuki, Yamasaki, Kohei, Ogura, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Journal of Molecular Biology 352
  
  Pages: 11-21
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Structure and function of bacterial super-biosystem responsible for import and depolymerization of macromolecules2005
- Author(s)
  Wataru, Hashimoto, Keiko, Mamma, Yukie, Maruyama, Masayuki, Yamasaki, Bunzo, Mikami, Kousaku, Murata
- Journal Title
  
  Bioscience, Biotechnology and Biochemistry 69
  
  Pages: 673-692
- NAID
  130000030348
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Journal Article] Structure, function and industrial application of N-acyl-D-glucosamine 2-epimerase from porcine kidney.2004
- Author(s)
  Isafumi Maru, Jyun Ohnishi, Yasuhiro Ohta, Takafumi Itoh, Wataru Hashimoto, Bunzo Mikami, Kousaku Murata
- Journal Title
  
  Applied Microbiology 2(1)
  
  Pages: 12-21
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-14360052
[Journal Article] Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7.2004
- Author(s)
  Masayuki, Yamasaki, Satoko Moriwaki, Susumu Miyake, Wataru Hashimoto, Kousaku Murata, Bunzo Mikami
- Journal Title
  
  J.Biol.Chem. 279(30)
  
  Pages: 31863-31872
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-14360052
[Journal Article] Crystal structure of unsaturated glucuronyl hydrolase, responsible for degradation of glycosaminoglycan, from Bacillus sp.GL1 at 1.8Å resolution.2004
- Author(s)
  Takafumi Itoh, Sae Akao, Wataru Hashimoto, Bunzo Mikami, Kousaku Murata
- Journal Title
  
  J.Biol.Chem. 279(30)
  
  Pages: 31804-31812
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-14360052
[Journal Article] Posttranslational processing of polysaccharide lyase : maturation route for gellan lyase in Bacillus sp.GL1.2002
- Author(s)
  Susumu Miyake, Eiko Kobayashi, Hirokazu Nankai, Wararu Hashimoto, Bunzo Mikami, Kousaku Murata
- Journal Title
  
  Arch.Biochem.Biophys. 422
  
  Pages: 211-220
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-14360052
[Patent] 海洋バイオマスからのエタノール生産2009
- Inventor(s)
  村田幸作, 橋本渉, 河井重幸, 織田浩司, 庵原啓司, 三上文三, 竹田浩之, 米山史紀, 落合秋人
- Industrial Property Rights Holder
  国立大学法人京都大学, 株式会社マルハニチロホールディングス
- Filing Date
  2009-08-28
- Acquisition Date
  2011-10-21
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] 走化性発現に関わる細菌由来ペクチン結合タンパク質のドメインダイナミクス2021
- Author(s)
  穴水康太郎、髙瀬隆一、日尾守、渡辺大輔、三上文三、橋本渉
- Organizer
  日本農芸化学会2021年度大会
- Data Source
  KAKENHI-PROJECT-18H02166
[Presentation] 走化性発現に関わる細菌由来ペクチン認識タンパク質の立体構造2020
- Author(s)
  穴水康太郎、髙瀬隆一、日尾守、渡辺大輔、三上文三、橋本渉
- Organizer
  第93回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-18H02166
[Presentation] プロバイオティクス性乳酸菌由来不飽和ウロン酸代謝の初発酵素KduIのX線結晶構造解析2020
- Author(s)
  山本雄大、髙瀬隆一、岩瀬久夢、渡辺大輔、三上文三、橋本渉
- Organizer
  日本応用糖質科学会第46回近畿支部会
- Data Source
  KAKENHI-PROJECT-18H02166
[Presentation] フソバクテリアによる宿主動物由来細胞外グリコサミノグリカンの認識2019
- Author(s)
  老木紗予子、藪内駿、三上文三、高瀬隆一、橋本渉
- Organizer
  第92回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-18H02166
[Presentation] 結晶構造解析によるアミラーゼの反応機構の解明2019
- Author(s)
  三上文三、坂直樹、森湖太郎、水谷公彦、高橋延行
- Organizer
  日本農芸化学会2019年度大会（東京）
- Invited
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] 細菌の金属輸送に関るEfeUOB系構成アルギン酸結合タンパク質のレアメタル結合性2019
- Author(s)
  奥村憲史、三上文三、橋本　渉、村田幸作
- Organizer
  日本農芸化学会2019年度大会（東京）
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] 非凍結結晶を用いたβーアミラーゼ（E380A）と基質との複合体のpH変化の解析2018
- Author(s)
  三上文三、安達基泰、姜　有那、水谷公彦、高橋延行
- Organizer
  日本農芸化学会2018年度大会（名古屋）
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] pH dependent conformational changes of β-amylase/glucose complex crystal measured at room temperature.2018
- Author(s)
  Bunzo Mikami, Xueni Hou, Kotaro Mori, Motoyasu Adachi, Youna Kang, Kimihiko Mizutani and Nobuyuki Takahashi
- Organizer
  31st European Crystallographic Meeting
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] Sphingomonas属細菌A1株由来アルギン酸結合タンパク質：EFハンド様モチーフに結合するカルシウムが構造を安定化する2018
- Author(s)
  奥村憲史、丸山如江、三上文三、村田幸作、橋本渉
- Organizer
  第91回日本生化学会大会
- Data Source
  KAKENHI-PROJECT-18H02166
[Presentation] X線結晶構造解析と部位特異的変異に基づくプロテイングルタミナーゼの機能解明2018
- Author(s)
  田中智紀、高橋延行、水谷公彦、山口庄太郎、三上文三
- Organizer
  日本農芸化学会関西支部例会（第502回講演会）
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] Klebsiella pneumoniae pullulanase とcyclodextrinとの相互作用様式の解明2018
- Author(s)
  坂　直樹、田中啓一郎、山野小波、水谷公彦、高橋延行、岩本博行、三上文三
- Organizer
  日本農芸化学会2018年度大会（名古屋）
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] ヘパリンの分解と代謝に関わる乳酸菌酵素系の構造・機能解析2018
- Author(s)
  岩瀬久夢、山田章文、河合桂吾、老木紗予子、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会関西支部第502回講演会
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] グリコサミノグリカンの輸送に関わる細菌タンパク質は二種類の基質結合型closed構造をとる2018
- Author(s)
  老木紗予子、佐藤賢宏、蒲地玲子、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会2018年度大会
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] cis-ヒノキレジノール合成酵素による酵素反応の分子機構解明に向けたβサブユニットの X線結晶構造解析2018
- Author(s)
  東　篤志、坂　直樹、鈴木　史朗、山村　正臣、三上　文三、梅澤　俊明
- Organizer
  第68回日本木材学会大会
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] グリコサミノグリカンの輸送に関わる細菌由来基質結合タンパク質のドメインダイナミクス2017
- Author(s)
  老木紗予子、蒲地玲子、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会2017年度大会
- Place of Presentation
  京都女子大学（京都市）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 非凍結結晶を用いたβ‐アミラーゼ／基質複合体のpHによる構造変化の解析2017
- Author(s)
  三上文三、河村和広。安達基泰、姜有那、水谷公彦、高橋延行
- Organizer
  日本農芸化学会
- Place of Presentation
  京都女子大学
- Year and Date
  2017-03-18
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] 酸性多糖の輸送に関わる基質結合タンパク質とABCトランスポーターとの相互作用様式2017
- Author(s)
  金子あい、老木紗予子、丸山如江、三上文三、村田幸作、橋本　渉
- Organizer
  2017年度生命科学系学会合同年次大会（第90回日本生化学会大会）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 貝類由来セルラーゼEG27IIのX線結晶構造解析および機能解析2017
- Author(s)
  野村泰介、水谷公彦、岩瀬久夢、高橋延行、三上文三
- Organizer
  日本農芸化学会
- Place of Presentation
  京都女子大学
- Year and Date
  2017-03-18
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] pH Dependent conformational change of bound maltose observed in the crystal of β-amylase at room temperature2016
- Author(s)
  Bunzo Mikami, Youna Kang, Kimihiko Mizutani, Nobuyuki Takahashi
- Organizer
  30th Meeting of the European Crystallographic Association
- Place of Presentation
  Basel, Switzerland
- Year and Date
  2016-08-28
- Int'l Joint Research
- Data Source
  KAKENHI-PROJECT-16H04909
[Presentation] 病原性連鎖桿菌による動物細胞外マトリックス（グリコサミノグリカン）の分解2016
- Author(s)
  老木紗予子、三上文三、村田幸作、橋本　渉
- Organizer
  第89回日本生化学会大会（2016年度）
- Place of Presentation
  仙台国際センター（仙台市）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 酸性多糖の代謝に関わる還元酵素の補酵素要求性に関わる構造要因2016
- Author(s)
  高瀬隆一、丸山如江、老木紗予子、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会2016年度大会
- Place of Presentation
  札幌コンベンションセンター（札幌市）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 動物細胞外マトリックス（グリコサミノグリカン）を基質とする病原性細菌ABCトランスポーター2016
- Author(s)
  老木紗予子、丸山如江、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会2016年度大会
- Place of Presentation
  札幌コンベンションセンター（札幌市）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 甘味タンパク質ソーマチンの連続フェムト秒結晶構造解析2015
- Author(s)
  桝田哲哉、南後恵理子、菅原道泰、鈴木守、登野健介、城地保昌、亀島敬、PARK Jaehyun、SongChangyong、初井宇記、矢橋牧名、大久保喬平、三上文三、北畠直文、谷史人、岩田想
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-28
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] β-アミラーゼ／マルトース不幸剛体結晶構造のpH変化2015
- Author(s)
  三上文三、河村和広、安達基泰、水谷公彦、高橋延行
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-28
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] グリコサミノグリカン輸送に関わる連鎖桿菌由来基質結合タンパク質のX線結晶構造解析2015
- Author(s)
  老木紗予子、丸山如江、三上文三、村田幸作、橋本　渉
- Organizer
  日本農芸化学会2015年度中部・関西支部合同大会
- Place of Presentation
  富山県立大学（射水市）
- Data Source
  KAKENHI-PROJECT-15H04629
[Presentation] 麹菌Aspergillus oryzae由来グルコアミラーゼのX線構造解析2015
- Author(s)
  永吉恵美、水谷公彦、高橋延行、三上文三、瀧井幸男
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-28
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 連鎖球菌による哺乳類細胞外マトリクス（グルコサミノグリカン）の分解：不飽和グルクニルヒドロラーゼの反応機構2015
- Author(s)
  中道優介、老木紗予子、三上文三、村田幸作、橋本渉
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-28
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 市街吸収分光法とX線結晶構造解析によるリジル‐tRNA合成酵素とL‐リジンの結合の解析およびその融合適合機構に対する洞察2015
- Author(s)
  滝田禎亮、三上文三、井上國世
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-27
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] イネにおけるジベレリン代謝酵素の構造と機能解析2015
- Author(s)
  竹原清日、三上文三、樫尾徹、松岡信、上口美弥子
- Organizer
  日本農芸化学会2015年度大会
- Place of Presentation
  岡山大学
- Year and Date
  2015-03-27
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] ダイズβ-アミラーゼのSer297及びIl299変異体の酵素化学的性質と結晶構造2014
- Author(s)
  河村和広、水谷公彦、高橋延行、三上文三
- Organizer
  2014年度日本農芸化学会関西支部大会（第486回講演会）
- Place of Presentation
  ・奈良先端科学技術大学院大学
- Year and Date
  2014-09-20
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 新規フェノールオキシダーゼの立体構造が示唆するタイプ3銅蛋白質の機能分化について2014
- Author(s)
  増田太郎、百次恭祐、平田孝、三上文三
- Organizer
  日本農芸化学会2014年度大会
- Place of Presentation
  明治大学生田キャンパス
- Data Source
  KAKENHI-PROJECT-24658287
[Presentation] N-末端ドメインが関与する植物型フェリチンの鉄放出機構2013
- Author(s)
  増田太郎、森本晋一郎、三上文三、豊原治彦
- Organizer
  日本農芸化学会大会
- Place of Presentation
  東北大学
- Data Source
  KAKENHI-PROJECT-24658287
[Presentation] X線結晶構造解析によるダイズβ-アミラーゼの反応機構の解明2013
- Author(s)
  三上文三、姜有那、安達基泰、河村和広、水谷公彦、高橋延行
- Organizer
  日本農芸化学2013年度大会
- Place of Presentation
  東北大学川内北キャンパス(宮城県仙台市)
- Year and Date
  2013-03-25
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 細菌由来アルギン酸 ABC トランスポーターの立体構造と基質輸送2013
- Author(s)
  丸山如江, 金子あい, 三上文三, 橋本渉, 村田幸作 (京大院・農)
- Organizer
  日本農芸化学会2013年度大会
- Place of Presentation
  東北大学・仙台市
- Year and Date
  2013-03-25
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] 体腔依存多糖取り込み ABC トランスポーターの構造機能相関とその応用2013
- Author(s)
  橋本渉, 丸山如江, 三上文三, 村田幸作 (京大院・農)
- Organizer
  日本農芸化学会2013年度大会 (シンポジウム)
- Place of Presentation
  東北大学・仙台市
- Year and Date
  2013-03-27
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] 多糖アルギン酸の取り込みに関わる細菌由来 ABC トランスポーターの X 線結晶構造解析2012
- Author(s)
  丸山如江, 伊藤貴文, 西谷悠, 三上文三, 橋本渉, 村田幸作 (京大院・農)
- Organizer
  日本農芸化学会2012年度大会
- Place of Presentation
  京都女子大学・京都市
- Year and Date
  2012-03-24
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] X線結晶構造解析によるダイズβ-アミラーゼの反応機構の解明2012
- Author(s)
  三上文三, 他5名
- Organizer
  2012年度農芸化学会大会
- Place of Presentation
  京都女子大学
- Year and Date
  2012-03-24
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] 結晶構造から生化学へ-X線結晶構造解析による酵素機能の解明-機能解析における問題点2012
- Author(s)
  三上文三
- Organizer
  第59回日本生化学会近畿支部例会シンポジウム
- Place of Presentation
  京都大学宇治キャンパス(京都府宇治市)
- Year and Date
  2012-05-19
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 細菌 ABC トランスポーターと連携する基質結合タンパク質によるヘテロ多糖アルギン酸の認識機構2012
- Author(s)
  西谷悠, 丸山如江, 伊藤貴文, 三上文三, 橋本渉, 村田幸作(京大院・農)
- Organizer
  2012年度日本農芸化学会関西支部大会
- Place of Presentation
  京都学園大学・亀岡市
- Year and Date
  2012-09-29
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] 高等植物型フェリチンのN-末端領域の構造と機能2012
- Author(s)
  増田太郎、森本晋一郎、三上文三、豊原治彦
- Organizer
  日本蛋白質科学会年会
- Place of Presentation
  名古屋国際会議場
- Data Source
  KAKENHI-PROJECT-24658287
[Presentation] X線結晶構造解析によるダイズβ-アミラーゼの反応機構の解明2012
- Author(s)
  三上文三、奥村覚二、山田壮介、安達基泰、水谷公彦、高橋延行
- Organizer
  日本農芸化学会2012年度大会
- Place of Presentation
  京都女子大学
- Year and Date
  2012-03-24
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] X線結晶構造解析による酵素機能の解明2012
- Author(s)
  三上文三
- Organizer
  日本農芸化学会関西支部第477回講演会
- Place of Presentation
  神尸大学大農学部(兵庫県神戸市)(招待講演)
- Year and Date
  2012-12-01
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] Crystal Structure of Protein-Glutaminase and Its Pro-Structures Similar to Enzyme- Substrate Complex2012
- Author(s)
  Mikami B., Hashizume R., Mizutani K., Takahashi N., Matsubara H., Matsunaga A., Yamaguchi S.
- Organizer
  27th European Crystallographic Meetings
- Place of Presentation
  Bergen, Norway
- Year and Date
  2012-08-09
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 結晶構造に基づくβ-アミラーゼの活性部位ループの機能解析2011
- Author(s)
  三上文三, 他3名
- Organizer
  2011年度農芸化学会大会
- Place of Presentation
  京都女子大学
- Year and Date
  2011-03-26
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] 多糖アルギン酸を取り込む細菌由 ABC トランスポーターと基質結合タンパク質の相互作用に関する構造機能解析2011
- Author(s)
  西谷悠, 丸山如江, 伊藤貴文, 三上文三, 橋本渉, 村田幸作(京大院・農)
- Organizer
  2011年度日本農芸化学会関西・中部支部合同大会
- Place of Presentation
  京都大学・京都市
- Year and Date
  2011-10-02
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] Sphingomonas属細菌A1株由来細胞表層に局在するアルギン酸結合タンパク質の遺伝子発現とX線結晶構造解析2010
- Author(s)
  橋本渉、丸山如江、落合秋人、三上文三、村田幸作
- Organizer
  日本農芸化学会関西支部大会
- Place of Presentation
  奈良(口頭発表)
- Year and Date
  2010-10-03
- Data Source
  KAKENHI-PROJECT-20380049
[Presentation] 結晶構造に基づいたアミラーゼの触媒機能の解明2010
- Author(s)
  三上文三
- Organizer
  第11回関西グライコサイエンスフォーラム
- Place of Presentation
  大阪市立大学
- Year and Date
  2010-05-15
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] ダイズβ-アミラーゼのフレキシブルループ変異体の結晶構造2010
- Author(s)
  三上文三, 他3名
- Organizer
  2010年度農芸化学会大会
- Place of Presentation
  東京大学
- Year and Date
  2010-03-28
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] 結晶構造に基づいたアミラーゼの触媒機能の解明2010
- Author(s)
  三上文三
- Organizer
  第11回関西グライコサイエンスフォーラム
- Place of Presentation
  大阪市立大学学術情報総合センター
- Year and Date
  2010-05-15
- Data Source
  KAKENHI-PROJECT-21380064
[Presentation] Sphingomonas属細菌A1株由来ペプチドグリカン分解酵素の立体構造に基づく触媒機構解析2010
- Author(s)
  丸山如江、落合秋人、三上文三、橋本渉、村田幸作
- Organizer
  日本農芸化学会関西支部大会
- Place of Presentation
  奈良(口頭発表)
- Year and Date
  2010-10-03
- Data Source
  KAKENHI-PROJECT-20380049
[Presentation] ファミリーGH73ペプチドグリカン分解酵素のX線結晶構造2009
- Author(s)
  橋本渉、落合秋人、門間敬子、丸山如江、伊藤貴文、三上文三、村田幸作
- Organizer
  日本農芸化学会2009年度大会
- Place of Presentation
  福岡(口頭発表)
- Year and Date
  2009-03-28
- Data Source
  KAKENHI-PROJECT-20380049
[Presentation] Crystal structure of $v β-amylase with mutated residues on flexible loop2008
- Author(s)
  B., Mikami, A., Tanabe, T., Saito, Y., Toyoda, S., Utsumi
- Organizer
  The Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Meijo University, Nagoya
- Year and Date
  2008-03-28
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] 大豆β-アミラーゼのフレキシブルループ変異体の結晶構造2008
- Author(s)
  三上文三
- Organizer
  日本農芸化学会2008年度大会
- Place of Presentation
  名城大学
- Year and Date
  2008-03-28
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] ダイズβ-アミラーゼのフレキシブルループ変異体の結晶構造2008
- Author(s)
  三上文三、田邊愛子、斉藤友宏、豊田康明、内海成
- Organizer
  日本農芸化学会
- Place of Presentation
  名城大学
- Year and Date
  2008-03-28
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] Al flagellin based on the crystal structure and Kousaku Murata. Polysaccharide-binding ability and cell surface localization of Sphingomonas sp2007
- Author(s)
  Yukie, Maruyama, Misato, Momma, Asako, Chuma, Bunzo, Mikami, Wataru, Hashimoto
- Organizer
  Regular Meeting of Japan Society for Bioscience, Biotechnology, and, Agrochemistry, Kansai Branch
- Place of Presentation
  Kyoto Prefectural University
- Year and Date
  2007-05-26
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] X-ray crystallography and functional conversion of proteins2007
- Author(s)
  B., Mikami
- Organizer
  The Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Tokyo University, Tokyo
- Year and Date
  2007-03-27
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] タンパク質の結晶構造解析と機能変換2007
- Author(s)
  三上文三
- Organizer
  日本農芸化学会2007年度大会
- Place of Presentation
  東京農業大学
- Year and Date
  2007-03-27
- Description
  「研究成果報告書概要(和文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] Structure and function relationship of plant seed storage proteins2007
- Author(s)
  T., Fukuda, T., Itoh, Y., Maruyama, N., Maruyama, B., Mikami, S., Utsumi
- Organizer
  The Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Tokyo Yniversity, Tokyo
- Year and Date
  2007-03-25
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-18380067
[Presentation] Structural factors for substrate specificity of alginate lyases belonging to polysaccharide Ivase families 5 and 72007
- Author(s)
  Kohei, Ogura, Masayuki, Yamasaki, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Organizer
  Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Tokyo University of Agriculture
- Year and Date
  2007-03-26
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Crystallographic study on structure and function relationship of flagellin on the cell surface of Sphingomonas sp. Al2007
- Author(s)
  Yukie, Maruyama, Misato, Momma, Bunzo, Mikami, Wataru, Hashimoto, Kousaku, Murata
- Organizer
  Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Tokyo University of Agriculture
- Year and Date
  2007-03-25
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Catalytic reaction mechanism and substrate specificity of PL7 alginate lyase2006
- Author(s)
  Kohei, Ogura, Masayuki, Yamasaki, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Organizer
  Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
- Place of Presentation
  Kyoto Women's University
- Year and Date
  2006-03-27
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Crystallization of alginate lyase Atu3025 from Agrobacterium tumefaciens C582005
- Author(s)
  Akihito, Ochiai, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Muratra
- Organizer
  Annual Meeting of The Society for Biotechnology
- Place of Presentation
  Tsukuba International Congress Center, Japan
- Year and Date
  2005-11-16
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Structural and functional analyses of PL-7 alginate lyase2005
- Author(s)
  Kohei, Ogura, Masayuki, Yamasaki, Wataru, Hashimoto, Bunzo, Mikami, Kousaku, Murata
- Organizer
  Annual Meeting of The Society for Biotechnology
- Place of Presentation
  Tsukuba International Congress Center, Japan
- Year and Date
  2005-11-16
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Similarity in catalytic reaction mechanism of alginate lyases with different structural scaffold2005
- Author(s)
  Masayuki, Yamasaki, Kohei, Ogura, Wataru, Hashimoto, Kousaku, Murata, Bunzo, Mikami
- Organizer
  Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry, Kansai Branch
- Place of Presentation
  Osaka University
- Year and Date
  2005-09-30
- Description
  「研究成果報告書概要(欧文)」より
- Data Source
  KAKENHI-PROJECT-17380053
[Presentation] Ｘ線結晶構造解析によるダイズβ-アミラーゼの反応機構の解明
- Author(s)
  三上文三、姜有那、安達基泰、河村和広、水谷公彦、高橋延行
- Organizer
  日本農芸化学２０１４年度大会
- Place of Presentation
  明治大学生田キャンパス
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 立体構造が示唆する甲殻類フェノールオキシダーゼとヘモシアニンの機能的差異
- Author(s)
  増田太郎、百次恭祐、平田孝、三上文三
- Organizer
  日本水産学会2014年度秋期大会
- Place of Presentation
  九州大学
- Year and Date
  2014-09-24 – 2014-09-27
- Data Source
  KAKENHI-PROJECT-24658287
[Presentation] 結晶構造から探る食品関連酵素の機能
- Author(s)
  三上文三
- Organizer
  アグリバイオシンポジウム２０１３
- Place of Presentation
  近畿大学農学部
- Invited
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 細菌由来アルギン酸ABCトランスポーターの立体構造と基質輸送
- Author(s)
  ○丸山如江、金子あい、三上文三、橋本　渉、村田幸作（京大院・農）
- Organizer
  日本農芸化学会2013年度大会
- Place of Presentation
  東北大学（仙台市）
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] 体腔依存多糖取り込みABCトランスポーターの構造機能相関とその応用
- Author(s)
  ○橋本　渉、丸山如江、三上文三、村田幸作（京大院・農）
- Organizer
  日本農芸化学会2013年度大会（シンポジウム）
- Place of Presentation
  東北大学（仙台市）
- Invited
- Data Source
  KAKENHI-PROJECT-23380049
[Presentation] Crystal structure of a crustacean prophenoloxidase elucidates the functional difference of the type 3 copper proteins.
- Author(s)
  Taro Masuda, Kyosuke Momoji, Takashi Hirata, Bunzo Mikami
- Organizer
  欧州生物無機化学会(EUROBIC12)
- Place of Presentation
  チューリッヒ大学
- Year and Date
  2014-08-24 – 2014-08-28
- Data Source
  KAKENHI-PROJECT-24658287
[Presentation] Structure and Function Analysis of Geobacillus Starch Antistaling Enzyme (SAS)
- Author(s)
  Bunzo Mikami, Hirotaka Bitoh, Yurie Anzai, Kimihiko Mizutani, Nobuyuki Takahashi, Masamichi Okada, Shotaro, Yamaguchi
- Organizer
  23rd Congress and General Assembly of the International Union of Crystallography
- Place of Presentation
  Montreal, Canada
- Year and Date
  2014-08-05 – 2014-08-12
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 微生物由来トランスグルタミナーゼの活性部位とプロ領域ペプチドとの相互作用
- Author(s)
  森光平、小林淳、吉村　卓也、水谷公彦、高橋延行、星由起子、山口庄太郎、三上文三
- Organizer
  日本農芸化学会関西支部第 479 回講演会
- Place of Presentation
  京都府立大学
- Data Source
  KAKENHI-PROJECT-24380054
[Presentation] 甲殻類由来新規フェノールオキシダーゼの立体構造が示唆するタイプ3銅蛋白質の機能的際に関する分子基盤
- Author(s)
  増田太郎、百次恭祐、平田孝、三上文三
- Organizer
  日本蛋白質科学会2014年度年会
- Place of Presentation
  ワークピア横浜
- Year and Date
  2014-06-25 – 2014-06-27
- Data Source
  KAKENHI-PROJECT-24658287

1. MURATA Kousaku (90142299)

# of Collaborated Projects: 8 results

# of Collaborated Products: 52 results
2. HASHIMOTO Wataru (30273519)

# of Collaborated Projects: 8 results

# of Collaborated Products: 63 results
3. YAMASHITA Honami (90252519)

# of Collaborated Projects: 4 results

# of Collaborated Products: 0 results
4. HIROSE Masaaki (60026523)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
5. TAKAHASHI Nobuyuki (20252520)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
6. ONDA Maki (60311916)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
7. TADA Toshiji (70275288)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
8. MORITA Yuhei (50027174)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
9. AIBARA Shigeo (20027197)

# of Collaborated Projects: 2 results

# of Collaborated Products: 0 results
10. 丸山如江 (90397563)

# of Collaborated Projects: 2 results

# of Collaborated Products: 9 results
11. 高瀬隆一 (10842156)

# of Collaborated Projects: 2 results

# of Collaborated Products: 2 results
12. TOYOHARA Haruhiko (90183079)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
13. MASUDA Taro (40395653)

# of Collaborated Projects: 1 results

# of Collaborated Products: 8 results
14. TSURUTA Hiroki (20346282)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
15. MARUYAMA NOBUYUKI (90303908)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
16. KINOSHITA Takatoshi (90405340)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
17. 鈴木徹 (70344330)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
18. 井上広滋 (60323630)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
19. 山崎正幸 (80397562)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
20. 小倉康平 (00586612)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
21. 老木紗予子 (40843090)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
22. 渡辺大輔 (30527148)

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
23. HEHRE Edward j.

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
24. SACCHETTINI ジェイムズシイ

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
25. SACCHETTINI James c.

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
26. Lomas David A.

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
27. Miranda Elena

# of Collaborated Projects: 1 results

# of Collaborated Products: 0 results
28. NAGATA Takashi

# of Collaborated Projects: 0 results

# of Collaborated Products: 2 results
29. 神谷成敏

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
30. 鈴木守

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results
31. 森田大輔

# of Collaborated Projects: 0 results

# of Collaborated Products: 1 results

MIKAMI Bunzo 三上 文三

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Elucidation of enzyme function by X-ray crystal structure at room temperature.Principal Investigator

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Functional analysis of food proteins and food-related enzymes.Principal Investigator

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Elucidation of mobile loop functions in food-related enzymesPrincipal Investigator

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Elucidation of mobile loop functions in food-related enzymesPrincipal Investigator

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MIKAMI Bunzo 三上文三